Genes and Evolution
Genes and Evolution
Genes and Evolution
nucleic acids
Variations in traits across a population are due to differences in genes. These variations in
the same genes are called alleles. Genes that have variations are said to be polymorphic.
The combinations of alleles present in an individual’s genome (all the genetic material)
constitute their genotype, the set of all alleles in an organism. The alleles can be
dominant or recessive, meaning that different combinations of the genes will result in
different traits.
The genotype and the environment together determine the phenotype type. That is the set
of all observable traits of on organism.
The allele frequency is a value that represents how common a particle allele is in the
gene pool of a population. A high value means that that allele is very common in a
population.
Genetic variation between genes, causing new alleles to arise, are caused by mutations.
Mutations are changes in DNA (nucleotide sequence).
Mutations in somatic cells (cells other than those involved in reproduction) can only
affect that organism. Sometimes called somatic mutations.
DNA consists of a sequence of nitrogenous bases that are read in groups of three, called
triplets (codons in RNA).
Silent mutations: a mutations that does not alter the amino acid when the codons are
translated.
Nonsense mutations: a mutations that results in a stop codon forming causing the
premature termination of translation.
Insertion mutations occur when a section of the chromosome breaks off and is
reattached to another chromosome.
It may start with changes in the allele frequency of genes within a population.
It may end with a population, over many generations, developing major changes in their
genetics and perhaps evolving into a new species.
A species is defined as a group of organisms that can mate and reproduce viable
offspring. Offspring are deemed viable if the offspring can further reproduce their own
offspring.
Some organisms may be able to reproduce, but, as their offspring cannot then they are
still classified as different species.
The BSC is a good definition for species some most organisms but not all. This is a good
example of evolving scientific understanding.
the genome is the set of all genes within an organism, the gene pool is the set of all
genes within a population
The number of different alleles will change over time within the gene pool due natural
and artificial factors
These genes control traits and determine the genotype and phenotype diversity within the
population.
The alleles in the gene pool can change. If organisms from another population come and
interbreed with an existing population, then new alleles can be passed onto progeny and
enter the gene pool. This is called gene flow.
Another type of genetic drift is the bottleneck effect. This effect involves natural events
(floods, fires, earthquakes) causing a dramatic reduction in a population.
Another type of genetic drift is the founder effect. This effect involves a small subset of a
population beginning a new population in a separate area.
This likely leads to a lower genetic diversity in the new population as there are less genes
existing in the smaller founding population.
Selective breeding or artificial selection refers to the process whereby the ‘mates’ within
a breeding pair are chosen by humans. This allows certain traits, and subsequent alleles,
Alternatively certain genes may be selected against, and organisms possessing those
alleles may be excluded from breeding.
Prezygotic mechanisms are those that stop a zygotes from forming. Some examples of
these prezygotic isolating mechanisms include…
→ Geographical: where a physical barrier like a mountain range or ocean separates two
populations.
→ Temporal: the breeding times/seasons of two populations do not overlap preventing
interbreeding.
→ Behavioural: the populations do not interbreed because their mating behaviours are not
reflected by other populations.
→ Structural/morphological: the populations reproductive organs cannot physically
facilitate intercourse.
Postzygotic isolating mechanisms are those that occur after a successful zygote has been
created. These mechanisms prevent the zygote from forming fertile offspring.
For example…
→ Mules = male donkey + female horse
→ Hinny = female donkey + male horse
→ Zonys = zebra + donkey
→ Liger / Tigons = Lion + tiger
Natural selection describes the process in which organisms survive and reproduce
because of advantageous phenotypes. These organisms are more biologically fit as they
are well adapted to their environment, meaning they are likely to survive and reproduce.
Organisms that are less biologically fit are selected against, meaning they are less likely
to survive and pass on their traits to future populations. Alleles that encode these less
Natural selection is the basis of evolution and speciation as the genetics within a
population change overtime.
There is always natural variation. This refers to the fact that multiple alleles exist,
leading to slight differences in phenotypes and traits observed in a population. Variation
may be heritable, that is it can be passed onto offspring.
Once a population is isolated from others of the same species they will then begin to be
exposed to different selection pressures. Selection pressures are aspects of an
environment that affects an organisms ability to survive and reproduce. The availability
of food, abundance of predators and environmental conditions (eg. temperature) all affect
an organisms chance of survival. Selection pressures are what drive natural selection.
Eventually after these genetic and morphological changes have occurred the two
populations may no longer be able to interbreed with each other. At this point they can be
classified as a new species.
It requires…
→ A population of interbreeding organisms that vary in heritable traits.
→ A geographical barrier that isolates a subset of the population. The population is
reproductively isolated.
→ Differing selection factors make different traits advantageous and make certain
organisms in the population more biologically fit.
→ Over generations of the organisms the allele frequencies steadily change.
→ Large genetic and morphological change between the species that prevents the two
populations of interbreeding.
Darwin’s finches are a classic biological examples of this mechanism for evolution. An
ancestral finch is thought to have come from central or south America to the Galapagos
Sympatric speciation involves the evolution of new species from a parent population
within he same geographical location. It often occurs when other selection pressures or
genetic abnormalities affect the new individuals within a population.
Howea palms are an example of this. Located on Lord Howe Island off the coast of
Tasmania, these palms (Howea forsteriana) are thought to have speciated from the parent
population (Howea belmoreana) after growing in volcanic soil which is more alkaline
(basic).
pH differences within the soil on the island began selecting for certain physiological
differences between the populations. This led to changes in flowering times within the
plants, which is a form of prezygotic reproductive isolation, which is then hypothesized
to have led to speciation.
process of evolution:
Evolution that involves new species evolving from a parent population is called
divergent evolution.
The term adaptive radiation is used to describe the rapid evolution of new species in an
environment. This occurs when a sudden wide change occurs in the environment.
Darwin’s finches are an example of this. As small groups of the finches spread through
the islands (founder effect) they rapidly adapted to the diverse food sources. This led to
the adaptive radiation of many new finch species.
The more closely related a species is to another the closer they will be and the more
recently they will share a common ancestor.
to create phylogenetic tree, you must first assess the common traits amongst the species
that you are going to organise
The most common trait shared between the species is forms the first dividing branch of
the tree.
The groups of organisms (or taxa) are then sequentially separated based on if they
share morphological, developmental, or genetic traits. The further away species are on
the tree, the less related they are.
Before advancements in
technology, evolutionary biologists
used morphology (body structures and
shapes) to classify organisms. They
also used this as a basis of relatedness
(how related two species were).
The process of evolution (allopatric speciation driven by natural selection) that has
been described so far is an example of divergent evolution. That is, the evolution of two
new species from a common ancestor species. This evolution leads to homologous
structures.
Analogous structures are those bones, organs or systems that show relatedness in
unrelated species that have evolved under similar selection pressures. Analogous
structures tell us that the more distantly related species evolved under the similar
selection pressures.
Some species possess features that have little or no function at all. These structures are
called vestigial structures.
In humans, vestigial structures include the coccyx (remnant of a tail), the wisdom
teeth (remnant of ancestors with large jaws) and ear muscles (remnants of ancestors who
could move their ears).
The process in which fossils form is called fossilization. The chance of becoming
fossilized after death is small.
Organisms in aquatic environments are more likely to become fossils as they are more
like to be buried under the running water. This will likely lead to sediments being
deposited over them over time.
Their presence is useful as scientist can use them to quickly relatively define the age of
an organism.
Transitional fossils are the remains of species of organisms that are thought to have
existed ‘between’ ancestral and modern species. They often show traits or looks as
though they are halfway between the ancestor and the modern species.
They provide insight into the environments and pressures that these population
experienced and provide unique insight into the species evolution.
On the right are fossils remains of the modern whale (d) and its terrestrial ancestor (a).
(b) and (c) could be considered transitional fossils.
Absolute dating is a quantitate dating measure that can be used to give a more exact
estimate of the age of the fossil.
Absolute dating might use radioactive isotopes with known half-lives (radiometric
dating). By analysing the ratio of elements in the fossil you can determine how
many half lives a fossil has existed for.
For example, if a fossil originally had 10g of Carbon-14 in it, and it is discovered to now
only have 2.5 grams we can roughly work out the age of the fossil.
Organisms that are more closely related will have more similarities in their DNA,
RNA, protein then organisms that are more distantly related. More closely
related organisms share a more recent common ancestor.
When species begin to diverge, they will accumulate mutations and differences in
their nucleotide sequence of shared genes over time. Sequences that are highly
similar between species are referred to as conserved sequences.
More closely related species or new species that have recently diverged, should
have very similar DNA / RNA sequences to their common ancestors.
Hominoids are superfamily within the primate order that encompass the great and lesser
apes.
Hominids are a part of the Hominidae family, these include humans, gorillas and
chimpanzees (humans and great apes).
Gibbons are lesser apes (smaller, don’t make nests and less sexual
dimorphism). Monkeys, in general, is any of nearly 200 species of tailed primates, except
for lemurs, tarsiers and lorises.
Longer arms than legs (except in Homo sapiens), shoulder blades that sit further back
and shoulder joints that allow arms to swing behind their head
Hominins are human-like animals that are characterized as walking upright. They are
the ancestors of modern man. The genus homo includes all ancestors of modern humans
and other species that are closely related. The key characteristic is our ability to walk on
Homo sapiens specially have the following shared traits when compared to other
hominins
Are typically leaner and more agile than our Homo predecessors
Have a large cranium with the back of the skulls being rounded
Defining humans:
Physical differences
Earlier Hominins were shorter and had longer limbs. These were good for surviving in
tropical regions to help with body cooling. We evolved more ‘stocky’ build to adapt
to more cooler climates
The ratio of limb size (arm-leg) has also gotten smaller. Australopithecus had arms
much closer to the length of their legs, whereas we have much shorter arms. This is
characteristic of so-called ‘knuckle walkers’ or our less bipedal and more
quadruped ancestors.
Generally more efficient than previous four limb movement, allowing bipeds to
conserve energy
Trends in primate and hominin fossils that show our gradual move to bipedalism include
The development of an S-shaped spine from straighter spine, this lowers the centre of
gravity and makes upright movement more efficient
The pelvis bones have become shorter and more bowl-like over time. This provides the
body on top of it more support as the bipedal motion means more force is applied on top
of the pelvis. The pelvis also become more narrow and round in the birth canal to
accommodate for the enlarged heads of the homo Sapien offspring.
Leg bones have become longer to aid in taking longer strides. This is more energy
efficient and lessens the strain the body's muscles.
Arm bones became shorter as now need for longer arms that allow us to swing between
the tree lessened. This led to an overall reduction in the arm to leg ratio (mathematical
comparison of the length of each limb). Additionally, these arms didn’t need to be longer
as they were not being ‘walked’ on like our knuckle-walking ancestors. This freed our
arms up to use tools and carry offspring.
These shapes differ in other hominids and primates. The general trends observed include:
One more popular explanation as to what may have driven these changes is that changes
in diet, mainly consuming more fruits animal products, and the use of fire enabling
cooking, enabled increased brain growth as the nutrients our ancestors received then
increased in diversity and quality.
With an increase in volume so to did the complexity of our brains. The cerebrum of
hominins specifically evolved to become much more folded, increasing the number of
active neurons and connections between brain cells and parts of the brain. This enabled
the species to develop more complex thought, emotions, problem solving, planning and
decision making.
The fossil record has played an important role in enabling us to learn about Homo sapien
evolution. The size/shape and geographical distribution of these bones has allowed us to learn
about how our species evolved and how it spread across the world.
Despite the array of fossils within the record there are still many questions to be answered
about our evolution. It’s important to consider the facts and the limitations of relying solely
on the fossil record when seeking to answer these questions.
Fossil evidence of Neanderthals and Homo sapiens tells us a story of two distinct species
living across Europe and Asia and the same time. But it is genetic evidence,
specially mtDNA analysis, that has led to the discovery that the two species were likely to
have interbred.
The Out of Africa theory states that Homo erectus left Africa and isolated populations
evolved into other homo species (neanderthalensis and heidelbergensis). Homo sapiens
themselves evolved in Africa and then migrated out of Africa and across the world.
Fossil evidence that supports this includes that the oldest fossils of homo sapiens have been
found in Africa.
Fossil evidence for this theory is that many modern humans share similarities with
extinct homo species in the same region.