NCBI Coronavirus genome information

Name Accession VersionHost Country Nucleotides

WHCV MN908947.3 Human China 29903 bp ss-RNA Complete genome
RaTG13 MN996532.2 Bat China 29855 bp RNA Complete genome
PCoV_GX-P5E MT040336.1 Pangloin China 29802 bp RNA Complete genome
PCoV_GX-P4L MT040333.1 Pangloin China 29805 bp RNA Complete genome
PCoV_GX-P5L MT040335.1 Pangloin China 29806 bp RNA Complete genome
MP789 MT121216.1 Pangloin China 29521 bp RNA Complete genome
NTU01 MT066175.1 Human Taiwan 29870 bp RNA Complete genome
INMI1 MT066156.1 Human Italy 29867 bp RNA Complete genome
HKU 1 NC_006577.2 Human China 29926 bp ss-RNA Complete genome
pos A B C D tree#
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252 C C T T 1
254 T T C C 1
546 T T C C 1
572 T T A A 1
583 G G A A 1
584 C C T T 1
601 G A G A 2
606 C C T T 1
607 A A G G 1
671 C C T T 1
677 C C A A 1
689 C C T T 1
698 A A T T 1
701 G G T T 1
713 G G A A 1
752 C C T T 1
781 T T A A 1
791 C C T T 1
849 A A G G 1
863 C C T T 1
890 A A G G 1
963 C C T T 1
989 A A T T 1
1028 G A A G 3
1037 A A G G 1
1085 T T C C 1
1152 C T C T 2
1154 A A C C 1
1272 A A T T 1
1400 C C T T 1
1430 C C T T 1
1448 A A T T 1
1451 C C T T 1
1500 G G A A 1
1544 C C T T 1
1555 T T C C 1
1574 C C T T 1
1577 T T C C 1
1604 T C T C 2
1613 T T C C 1
1616 C C T T 1
1652 C C T T 1
1667 T C T C 2
1670 C T C T 2
1673 T T C C 1
1679 T T A A 1
1701 G G A A 1
1712 C T T C 3
1755 T T C C 1
1831 C T C T 2
1925 A A C C 1
1928 A G G A 3
1943 A A G G 1
1988 T T G G 1
2010 G G A A 1
2031 A A C C 1
2065 A A C C 1
2067 T T C C 1
2085 G G A A 1
2103 A A T T 1
2124 T C C T 3
2171 C T C T 2
2176 A A G G 1
2191 A A G G 1
2203 T T C C 1
2221 G G A A 1
2222 T T A A 1
2239 A A T T 1
2279 G G A A 1
2302 G A G A 2
2332 C T C T 2
2341 A A G G 1
2353 T T C C 1
2456 T T C C 1
2476 T C C T 3
2482 T C C T 3
2507 C C T T 1
2516 A A G G 1
2539 A A G G 1
2550 G G A A 1
2559 C T C T 2
2575 T C T C 2
2596 C C T T 1
2611 A G A G 2
2632 C T C T 2
2681 G G A A 1
2698 T T A A 1
2708 T T C C 1
2744 T T C C 1
2764 T C C T 3
2797 C C T T 1
2809 C C T T 1
2815 C C T T 1
2827 T T C C 1
2842 C C T T 1
2863 C C T T 1
2956 G G A A 1
2957 A A G G 1
2959 T T A A 1
2982 T C C T 3
2985 G G A A 1
2996 C C A A 1
3000 T T C C 1
3016 C C T T 1
3019 T T A A 1
3052 A A T T 1
3067 A A G G 1
3073 G A G A 2
3103 G G A A 1
3118 T T C C 1
3133 T T A A 1
3145 A A G G 1
3169 A A T T 1
3187 T C T C 2
3215 G G T T 1
3225 G G A A 1
3238 A A G G 1
3242 G G C C 1
3254 T C C T 3
3299 C T C T 2
3316 C C A A 1
3330 T C T C 2
3337 T T A A 1
3346 G G A A 1
3367 T T A A 1
3380 C C G G 1
3384 C C T T 1
3428 A A G G 1
3441 T C C T 3
3445 G G A A 1
3457 A G A G 2
3510 G G A A 1
3516 G G C C 1
3532 T T C C 1
3544 A A T T 1
3596 G A A G 3
3613 C C T T 1
3658 T T C C 1
3661 G G A A 1
3673 T T C C 1
3676 C C T T 1
3692 T A T A 2
3744 T T C C 1
3746 A G A G 2
3791 A A T T 1
3797 T T C C 1
3803 A A G G 1
3827 G G A A 1
3845 T T C C 1
3854 C C T T 1
3857 A T A T 2
3858 G G A A 1
3861 C C T T 1
3873 T C C T 3
3887 T T C C 1
3890 T T C C 1
3906 A G A G 2
3973 T T C C 1
3977 A A G G 1
3988 C C A A 1
4001 A A T T 1
4025 A A G G 1
4027 A A C C 1
4034 T T A A 1
4041 A A C C 1
4053 A A G G 1
4062 G G A A 1
4078 T C T C 2
4081 T T C C 1
4090 G G A A 1
4106 A G G A 3
4109 G G A A 1
4113 A C A C 2
4118 A A G G 1
4143 A A G G 1
4213 C T C T 2
4229 T T A A 1
4274 T T A A 1
4289 T T C C 1
4293 T T C C 1
4319 G G A A 1
4329 G G A A 1
4332 C C A A 1
4373 G G A A 1
4397 A A T T 1
4398 G A G A 2
4400 G G A A 1
4418 G G A A 1
4454 T T C C 1
4484 T T A A 1
4490 G A G A 2
4520 A A G G 1
4526 C C T T 1
4535 T T A A 1
4565 G G A A 1
4566 C C G G 1
4619 A A T T 1
4622 A G A G 2
4646 C C T T 1
4683 G G A A 1
4692 T C T C 2
4710 A A G G 1
4737 A A G G 1
4746 T T C C 1
4752 C C T T 1
4803 A G A G 2
4821 A A T T 1
4822 C C T T 1
4824 T T G G 1
4827 C C T T 1
4842 C T T C 3
4851 G G A A 1
4890 G G A A 1
4917 T T A A 1
4935 G G A A 1
4947 T C C T 3
4962 T T A A 1
4984 T T C C 1
4987 T T A A 1
5002 T T A A 1
5015 T C T C 2
5039 A G G A 3
5069 G G A A 1
5111 C T C T 2
5114 A A T T 1
5117 C T C T 2
5121 C C A A 1
5246 C C T T 1
5249 C T T C 3
5273 A A T T 1
5279 A A T T 1
5360 A A G G 1
5390 T T A A 1
5391 C T C T 2
5430 C C G G 1
5468 C C T T 1
5474 A A G G 1
5492 A A G G 1
5537 C C T T 1
5543 T T C C 1
5603 A A G G 1
5612 T C C T 3
5615 T C C T 3
5621 A G G A 3
5624 A A T T 1
5636 A A T T 1
5648 T T C C 1
5675 T C T C 2
5678 G G A A 1
5716 G A G A 2
5741 A A G G 1
5750 C C T T 1
5760 T T C C 1
5762 G G A A 1
5789 A A G G 1
5792 G G A A 1
5795 G G A A 1
5801 C T C T 2
5834 C C T T 1
5871 A A G G 1
5880 A A G G 1
5881 C C T T 1
5882 G T T G 3
5907 C C T T 1
5955 C C G G 1
6033 T T C C 1
6045 A A G G 1
6066 C C T T 1
6090 A T A T 2
6093 A G G A 3
6126 C C T T 1
6138 T C C T 3
6164 C T T C 3
6172 T T C C 1
6207 G G A A 1
6219 T T C C 1
6225 G G A A 1
6235 T T G G 1
6267 A G G A 3
6282 T T C C 1
6288 C T C T 2
6297 C C T T 1
6324 T C C T 3
6354 A A G G 1
6405 C C T T 1
6426 G G A A 1
6474 A A T T 1
6480 A A G G 1
6486 A A G G 1
6489 T T C C 1
6517 G G A A 1
6573 C C T T 1
6615 G A A G 3
6627 G G A A 1
6651 C C T T 1
6711 T T A A 1
6714 T T A A 1
6747 A A T T 1
6751 A A G G 1
6779 T T G G 1
6877 A A G G 1
6945 C C T T 1
6976 T T A A 1
6983 A A G G 1
6984 C C T T 1
6994 C T T C 3
7003 A A G G 1
7088 A A T T 1
7115 G G A A 1
7206 C T C T 2
7248 C T C T 2
7265 C C T T 1
7271 C C T T 1
7299 T T C C 1
7322 T T A A 1
7337 C C T T 1
7343 G G A A 1
7365 T A A T 3
7455 A A T T 1
7459 A A G G 1
7537 T T C C 1
7552 C C T T 1
7567 G G A A 1
7605 A A T T 1
7752 C T C T 2
7767 A A T T 1
7842 G G A A 1
7875 C C A A 1
7881 C C T T 1
7890 C T T C 3
7893 T T C C 1
7905 T T C C 1
7914 T C T C 2
7956 G G A A 1
7980 A A G G 1
7989 A A T T 1
8007 T T A A 1
8013 C C T T 1
8014 A A G G 1
8022 T C T C 2
8064 T T C C 1
8067 A A G G 1
8076 A A G G 1
8079 G G A A 1
8100 C C T T 1
8106 T T C C 1
8112 T T C C 1
8115 C C T T 1
8124 C T C T 2
8187 A A T T 1
8212 T T G G 1
8217 G G T T 1
8296 G A G A 2
8328 C C T T 1
8337 G G A A 1
8394 A A T T 1
8421 C C T T 1
8448 T T C C 1
8496 A A G G 1
8538 A A T T 1
8610 C C T T 1
8628 C C T T 1
8631 T T C C 1
8637 G G A A 1
8652 G G A A 1
8655 G G A A 1
8673 C T C T 2
8692 G G A A 1
8751 A A G G 1
8757 T C T C 2
8832 G G A A 1
8868 A A G G 1
8881 C C T T 1
8889 C C T T 1
8910 C C T T 1
8956 T T G G 1
8967 C T C T 2
9000 T T A A 1
9010 G G T T 1
9108 C T T C 3
9115 A A G G 1
9234 T T C C 1
9246 C T C T 2
9300 G G A A 1
9321 T T C C 1
9345 A A G G 1
9360 T T C C 1
9405 T T A A 1
9432 C C T T 1
9450 T T C C 1
9498 T T C C 1
9534 A A T T 1
9543 T T C C 1
9544 G G A A 1
9555 T T C C 1
9609 T T G G 1
9651 T C T C 2
9735 C C T T 1
9747 T C T C 2
9805 T T C C 1
9808 C C T T 1
9852 C C T T 1
9924 T C T C 2
9936 T C T C 2
9939 G G A A 1
10020 T C C T 3
10035 T C T C 2
10044 G A A G 3
10053 A A T T 1
10095 G G T T 1
10098 G A G A 2
10107 T C C T 3
10119 A G G A 3
10152 A T A T 2
10179 C T C T 2
10191 T T C C 1
10224 T T C C 1
10260 C T T C 3
10308 T T C C 1
10335 C C A A 1
10344 T T C C 1
10398 T C T C 2
10458 T C C T 3
10503 C T T C 3
10521 A A G G 1
10524 C T T C 3
10533 G G A A 1
10548 C C T T 1
10549 T T C C 1
10557 G G A A 1
10620 G G A A 1
10626 T T C C 1
10629 A T T A 3
10692 G G A A 1
10719 T T A A 1
10731 A G G A 3
10761 G G A A 1
10830 T T C C 1
10842 T T C C 1
10878 C C T T 1
10938 G G A A 1
10950 T C T C 2
10977 C C T T 1
10998 C C T T 1
11019 T T C C 1
11037 C T T C 3
11064 T T C C 1
11085 C C T T 1
11112 T T A A 1
11265 C C T T 1
11322 T T C C 1
11346 C C T T 1
11373 T T C C 1
11403 T T C C 1
11436 A A T T 1
11448 C T T C 3
11451 A A G G 1
11466 T C C T 3
11512 T C C T 3
11527 T T C C 1
11569 T T C C 1
11597 T C T C 2
11600 G G A A 1
11606 A A G G 1
11708 C C T T 1
11709 T T C C 1
11717 C C T T 1
11729 T T C C 1
11762 C C T T 1
11825 T C C T 3
11936 T C T C 2
11975 C T T C 3
12017 T C C T 3
12023 G A A G 3
12047 G G A A 1
12051 C T C T 2
12095 T C T C 2
12098 A A G G 1
12113 T A T A 2
12116 C T C T 2
12128 C T C T 2
12170 C C T T 1
12197 G G A A 1
12221 A A T T 1
12260 C C T T 1
12263 T A A T 3
12275 A A G G 1
12309 C C T T 1
12335 G G A A 1
12422 C C T T 1
12506 T C T C 2
12530 G G A A 1
12536 G G A A 1
12629 T T C C 1
12638 T T A A 1
12680 G G A A 1
12785 A A T T 1
12788 A A T T 1
12798 C T C T 2
12851 A A T T 1
12854 A A T T 1
12873 T T C C 1
12890 G G A A 1
13049 T T A A 1
13073 T T A A 1
13088 C C T T 1
13100 T T C C 1
13106 C C T T 1
13134 C C T T 1
13142 G G A A 1
13143 T T C C 1
13148 C C T T 1
13157 G G A A 1
13166 A A G G 1
13199 T T C C 1
13205 C C T T 1
13250 T T A A 1
13274 A A G G 1
13286 A A G G 1
13289 A A T T 1
13319 T T G G 1
13436 T C C T 3
13439 T T C C 1
13451 G G A A 1
13526 G A G A 2
13782 A A G G 1
13850 T C C T 3
13862 A G G A 3
13865 C C T T 1
13957 A A G G 1
13979 T T C C 1
13980 G G A A 1
14009 C C T T 1
14033 T T C C 1
14072 C C T T 1
14163 A A C C 1
14174 T C C T 3
14240 C C T T 1
14249 G A G A 2
14279 T T C C 1
14294 C C T T 1
14297 C C T T 1
14309 A A G G 1
14375 T A A T 3
14384 G A A G 3
14441 A A G G 1
14466 G A A G 3
14502 T C C T 3
14528 A A T T 1
14549 C C T T 1
14567 T T A A 1
14570 G G A A 1
14591 C C T T 1
14630 T T C C 1
14633 A A G G 1
14645 G G A A 1
14738 T T A A 1
14750 A A T T 1
14753 A T A T 2
14754 C C T T 1
14768 A A T T 1
14804 A A T T 1
14900 C C T T 1
14912 C C T T 1
14928 C T C T 2
14951 G G A A 1
15005 C C A A 1
15026 C C T T 1
15041 G G C C 1
15047 G G A A 1
15098 T T C C 1
15101 G G A A 1
15143 T T C C 1
15147 C C T T 1
15155 A A T T 1
15188 T T A A 1
15206 C C T T 1
15218 C C T T 1
15221 T T C C 1
15227 C C T T 1
15251 C C A A 1
15260 C C T T 1
15261 C C T T 1
15272 A A T T 1
15323 A A T T 1
15356 A A T T 1
15362 A A T T 1
15365 A A G G 1
15419 A A T T 1
15422 G G A A 1
15440 A A T T 1
15455 C C T T 1
15492 T T C C 1
15494 A A T T 1
15521 A A T T 1
15524 T T C C 1
15530 A A T T 1
15542 A A T T 1
15545 C C T T 1
15566 C T C T 2
15569 C C T T 1
15602 C C T T 1
15608 C T C T 2
15626 T C T C 2
15704 T C C T 3
15710 C C T T 1
15749 T T A A 1
15758 G G A A 1
15848 T C C T 3
15927 G G A A 1
15983 C C T T 1
16043 C T T C 3
16064 T T C C 1
16067 C C T T 1
16118 G A A G 3
16139 C C T T 1
16157 A A G G 1
16166 T T C C 1
16235 G G A A 1
16259 T T C C 1
16262 C C T T 1
16275 A C C A 3
16280 C C T T 1
16281 C T C T 2
16307 T T C C 1
16343 G G A A 1
16370 C C T T 1
16421 C C T T 1
16451 G G A A 1
16463 C T C T 2
16535 G G A A 1
16550 G G T T 1
16574 G G A A 1
16619 T T G G 1
16622 C C T T 1
16643 T C C T 3
16658 C C T T 1
16781 T T C C 1
16796 A A G G 1
16799 C C T T 1
16805 T T C C 1
16829 A A G G 1
16850 T T C C 1
16892 T T A A 1
16929 T T C C 1
16931 A A T T 1
16955 C C T T 1
16958 G G A A 1
16964 T C T C 2
16967 A A T T 1
16970 A A T T 1
16976 G G A A 1
16985 T T A A 1
16988 T T A A 1
16997 A A C C 1
17006 G G A A 1
17045 C C T T 1
17075 T T A A 1
17093 T T C C 1
17096 C C T T 1
17097 C C A A 1
17120 T T C C 1
17135 C C T T 1
17246 G G A A 1
17270 A A G G 1
17300 C C T T 1
17321 A A G G 1
17336 T T C C 1
17339 C T T C 3
17408 G A A G 3
17597 T T C C 1
17657 T T A A 1
17660 G G A A 1
17663 G G A A 1
17666 A T A T 2
17669 A A T T 1
17702 C T C T 2
17831 C C T T 1
17909 T T A A 1
17921 G G A A 1
17928 T T C C 1
17930 G G A A 1
17948 T G T G 2
17972 T T A A 1
18017 T T C C 1
18035 G G A A 1
18038 A A T T 1
18050 G G A A 1
18071 T T C C 1
18074 C T C T 2
18078 G A A G 3
18098 T C C T 3
18101 T T C C 1
18137 G G A A 1
18182 A A T T 1
18239 A A T T 1
18350 G G A A 1
18398 A G G A 3
18422 G G A A 1
18428 T C C T 3
18437 G G A A 1
18461 C C T T 1
18503 T T A A 1
18530 A A G G 1
18593 T T C C 1
18638 C C T T 1
18641 C T T C 3
18650 G G A A 1
18665 T T A A 1
18722 C C T T 1
18806 T T C C 1
18809 A G A G 2
18843 C C T T 1
18872 T T A A 1
18875 A A T T 1
18878 A A G G 1
18905 C C T T 1
18927 T T C C 1
18929 A A T T 1
18947 G A G A 2
18950 G A G A 2
18986 G G A A 1
19007 T T C C 1
19009 G A A G 3
19016 C C T T 1
19019 A A C C 1
19022 C C T T 1
19031 T T A A 1
19037 A A T T 1
19040 C C T T 1
19061 T T C C 1
19064 T T A A 1
19076 T T C C 1
19079 C T T C 3
19091 G G T T 1
19094 T T C C 1
19139 C C T T 1
19148 T T C C 1
19181 A A T T 1
19196 A A T T 1
19217 T T A A 1
19223 C C T T 1
19226 G G A A 1
19262 T C T C 2
19271 T T A A 1
19295 G G A A 1
19301 T T C C 1
19307 G G A A 1
19310 T T A A 1
19328 A A G G 1
19338 T T C C 1
19340 A A T T 1
19346 C C T T 1
19352 C T T C 3
19364 C T T C 3
19433 A A T T 1
19448 C C T T 1
19487 C C T T 1
19499 C C T T 1
19517 A A T T 1
19520 C C T T 1
19526 T T C C 1
19550 T T C C 1
19601 T T A A 1
19607 G G A A 1
19610 T T A A 1
19625 C C T T 1
19673 A A G G 1
19706 T T C C 1
19712 T T C C 1
19721 C C T T 1
19724 T T C C 1
19805 C C T T 1
19823 C C T T 1
19862 T T C C 1
19871 C C T T 1
19937 C T C T 2
19976 T T C C 1
19991 G A G A 2
20030 T C T C 2
20081 G A G A 2
20090 T T C C 1
20126 T C C T 3
20141 C T T C 3
20159 G G A A 1
20186 G G T T 1
20228 T T A A 1
20231 T T C C 1
20234 A A T T 1
20241 A A G G 1
20243 A A T T 1
20249 T T A A 1
20255 T T A A 1
20262 T T A A 1
20285 C C A A 1
20294 A A T T 1
20304 A A G G 1
20363 A G A G 2
20366 T T C C 1
20520 C C A A 1
20550 T C T C 2
20624 T C T C 2
20627 G A G A 2
20711 G G A A 1
20790 C C T T 1
20819 A A T T 1
20837 A A G G 1
20888 G G A A 1
20924 T T A A 1
20966 A G G A 3
20987 G G A A 1
20990 T G G T 3
21047 C A C A 2
21053 A T A T 2
21116 T T C C 1
21149 G G A A 1
21263 C C T T 1
21326 T T A A 1
21410 G G A A 1
21428 T T C C 1
21509 C T C T 2
21512 T C T C 2
21558 C C T T 1
21668 G A A G 3
21677 A T T A 3
21680 A A T T 1
21683 T T A A 1
21722 A G A G 2
21791 G G A A 1
21830 C C T T 1
21842 G G A A 1
21920 A A T T 1
21968 C C T T 1
22021 A A C C 1
22028 C C T T 1
22042 G G A A 1
22052 C C T T 1
22067 C C G G 1
22070 T T A A 1
22096 C C T T 1
22100 C C A A 1
22102 T T A A 1
22111 T C C T 3
22117 C C T T 1
22132 C C T T 1
22142 G G A A 1
22167 C T C T 2
22173 C T C T 2
22188 C C T T 1
22197 T C T C 2
22203 C C T T 1
22213 C C A A 1
22214 A A C C 1
22217 T T A A 1
22221 T A A T 3
22230 A A G G 1
22271 C C T T 1
22273 A G A G 2
22279 T C T C 2
22294 T T C C 1
22309 G G A A 1
22318 C T T C 3
22321 A A T T 1
22342 T T A A 1
22354 T T C C 1
22356 A A T T 1
22362 G G C C 1
22365 G G A A 1
22377 A A T T 1
22383 T T A A 1
22389 T T C C 1
22395 T T A A 1
22410 T T C C 1
22430 A A G G 1
22463 C C T T 1
22466 C C T T 1
22469 A A C C 1
22499 C C T T 1
22520 T T C C 1
22535 A G A G 2
22586 C C T T 1
22598 G G A A 1
22601 A A G G 1
22613 G G A A 1
22617 A A G G 1
22634 A A G G 1
22640 A A T T 1
22643 T T C C 1
22655 G G A A 1
22685 T C C T 3
22686 C C A A 1
22700 T T A A 1
22710 T T C C 1
22739 C C T T 1
22742 C C T T 1
22748 G G A A 1
22757 T T A A 1
22797 T T C C 1
22801 C C A A 1
22803 T T A A 1
22805 A A T T 1
22808 T T C C 1
22827 A A T T 1
22848 T T A A 1
22872 A A T T 1
22905 A A T T 1
22908 C C T T 1
22917 T T A A 1
22932 A A G G 1
22941 T T C C 1
22944 G G A A 1
22956 C C A A 1
22974 C T T C 3
22980 A A G G 1
22998 C C T T 1
23016 T T A A 1
23028 T A T A 2
23046 C T T C 3
23070 C C A A 1
23085 T A A T 3
23103 G A G A 2
23112 C T T C 3
23142 A A T T 1
23148 T T C C 1
23154 A T A T 2
23184 G G T T 1
23187 T T A A 1
23197 T T C C 1
23242 A A G G 1
23298 T C T C 2
23328 A T T A 3
23365 T G G T 3
23388 T C T C 2
23391 C T T C 3
23394 G T G T 2
23421 C T T C 3
23466 T C C T 3
23475 T T C C 1
23485 G C C G 3
23486 T A A T 3
23487 T A A T 3
23490 A T T A 3
23494 T C C T 3
23496 T A A T 3
23507 T A A T 3
23514 A T T A 3
23518 T A A T 3
23519 C G G C 3
23529 C T T C 3
23579 C C T T 1
23584 T T A A 1
23608 A A T T 1
23639 T T C C 1
23641 G G A A 1
23683 A T T A 3
23740 C T T C 3
23791 G G A A 1
23851 T T C C 1
23863 G G A A 1
23869 T T G G 1
23899 A A T T 1
23936 T T A A 1
23942 T T C C 1
23966 T T A A 1
24059 C C T T 1
24077 G A G A 2
24122 C T C T 2
24212 T G T G 2
24218 A T A T 2
24286 C C T T 1
24299 T C T C 2
24306 T T C C 1
24317 C T C T 2
24338 C T C T 2
24356 A A T T 1
24416 A G A G 2
24446 T C T C 2
24449 T T C C 1
24503 A G G A 3
24512 T T C C 1
24594 C T C T 2
24612 T C C T 3
24679 T T C C 1
24681 A A T T 1
24699 T T A A 1
24726 A T T A 3
24759 T T C C 1
24813 G G A A 1
24825 A G G A 3
24828 T T C C 1
24831 T T C C 1
24855 C C T T 1
24864 T T A A 1
24918 A A G G 1
24930 G G A A 1
24987 C C T T 1
25030 T C T C 2
25051 T T A A 1
25131 T T A A 1
25143 A A T T 1
25155 T C C T 3
25164 A A T T 1
25194 T T C C 1
25278 C C T T 1
25281 A A T T 1
25305 T T A A 1
25335 C T C T 2
25365 A T T A 3
25443 A A T T 1
25491 C T C T 2
25509 A G A G 2
25512 T T C C 1
25518 T C C T 3
25633 T C T C 2
25653 T T C C 1
25736 C C T T 1
25754 T T C C 1
25760 T T A A 1
25782 T C T C 2
25809 T C C T 3
25917 A A T T 1
25950 C T T C 3
26062 G A G A 2
26077 C C A A 1
26083 C C A A 1
26096 A A G G 1
26105 C C T T 1
26116 C T C T 2
26173 C T C T 2
26182 C C T T 1
26222 T C C T 3
26231 C C T T 1
26234 C C T T 1
26246 G G A A 1
26285 T T G G 1
26312 C C T T 1
26330 C T C T 2
26339 T C T C 2
26345 C T C T 2
26363 C T T C 3
26378 T T A A 1
26439 T T A A 1
26441 T T A A 1
26456 G G A A 1
26534 T T C C 1
26561 T C T C 2
27040 G G T T 1
27112 T A T A 2
27140 C C T T 1
27178 T T C C 1
27277 T C C T 3
27283 C C T T 1
27336 T T A A 1
27374 A A C C 1
27389 T T A A 1
27396 C T C T 2
27401 C C G G 1
27404 C C T T 1
27419 C C T T 1
27422 T T A A 1
27446 A G A G 2
27481 T T A A 1
27786 G G A A 1
27792 T C C T 3
27810 T C C T 3
27828 C C T T 1
27853 T T C C 1
27864 G G A A 1
27879 A A G G 1
27943 C C T T 1
27946 A G G A 3
28038 C T C T 2
28041 G A G A 2
28074 C T T C 3
28129 C C T T 1
28139 G G A A 1
28225 T T C C 1
28229 G A A G 3
28267 C C T T 1
28270 A A G G 1
28297 T T C C 1
28360 T T C C 1
28375 C C T T 1
28479 C C T T 1
28482 A A G G 1
28539 C C T T 1
28560 T T C C 1
28665 T C C T 3
28671 T T C C 1
28719 G G A A 1
28728 T T C C 1
29020 A A G G 1
29159 C T C T 2
29213 C C A A 1
29384 T C C T 3
29387 C T T C 3
29456 A G A G 2
29471 C C T T 1
29508 A A G G 1
29517 G G A A 1
29556 A G G A 3
29557 G A A G 3
29586 T A T A 2
29607 G G C C 1
29625 T C T C 2
29685 T C T C 2
29694 C T C T 2
29701 C C T T 1
29757 C C T T 1
29766 A A T T 1
29952 G A A G 3
29997 G G A A 1
30088 C C T T 1
30189 A A G G 1
Column1 Column2
Input file: C:\Users\Danny Pattirajawane\Documents\ISST FST UT 2021\Phylogenetic analysis\covmsa9.fasta

Using the letters A B

A = MN908947.3
B = MN996532.2
C = MT040336.1
D = MT121216.1

There are 3 possible bifurcating trees:

1 2 3
A C A B A B
\___/ \___/ \___/
/ \ / \ / \
B D C D D C

The following sites support the indicated trees:

Total sites: 1114

pos A B C D tree#
--- - - - - -----
252 C C T T 1
254 T T C C 1
546 T T C C 1
572 T T A A 1
583 G G A A 1
584 C C T T 1
601 G A G A 2
606 C C T T 1
607 A A G G 1
671 C C T T 1
677 C C A A 1
689 C C T T 1
698 A A T T 1
701 G G T T 1
713 G G A A 1
752 C C T T 1
781 T T A A 1
791 C C T T 1
849 A A G G 1
863 C C T T 1
890 A A G G 1
963 C C T T 1
989 A A T T 1
1028 G A A G 3
1037 A A G G 1
1085 T T C C 1
1152 C T C T 2
1154 A A C C 1
1272 A A T T 1
1400 C C T T 1
1430 C C T T 1
1448 A A T T 1
1451 C C T T 1
1500 G G A A 1
1544 C C T T 1
1555 T T C C 1
1574 C C T T 1
1577 T T C C 1
1604 T C T C 2
1613 T T C C 1
1616 C C T T 1
1652 C C T T 1
1667 T C T C 2
1670 C T C T 2
1673 T T C C 1
1679 T T A A 1
1701 G G A A 1
1712 C T T C 3
1755 T T C C 1
1831 C T C T 2
1925 A A C C 1
1928 A G G A 3
1943 A A G G 1
1988 T T G G 1
2010 G G A A 1
2031 A A C C 1
2065 A A C C 1
2067 T T C C 1
2085 G G A A 1
2103 A A T T 1
2124 T C C T 3
2171 C T C T 2
2176 A A G G 1
2191 A A G G 1
2203 T T C C 1
2221 G G A A 1
2222 T T A A 1
2239 A A T T 1
2279 G G A A 1
2302 G A G A 2
2332 C T C T 2
2341 A A G G 1
2353 T T C C 1
2456 T T C C 1
2476 T C C T 3
2482 T C C T 3
2507 C C T T 1
2516 A A G G 1
2539 A A G G 1
2550 G G A A 1
2559 C T C T 2
2575 T C T C 2
2596 C C T T 1
2611 A G A G 2
2632 C T C T 2
2681 G G A A 1
2698 T T A A 1
2708 T T C C 1
2744 T T C C 1
2764 T C C T 3
2797 C C T T 1
2809 C C T T 1
2815 C C T T 1
2827 T T C C 1
2842 C C T T 1
2863 C C T T 1
2956 G G A A 1
2957 A A G G 1
2959 T T A A 1
2982 T C C T 3
2985 G G A A 1
2996 C C A A 1
3000 T T C C 1
3016 C C T T 1
3019 T T A A 1
3052 A A T T 1
3067 A A G G 1
3073 G A G A 2
3103 G G A A 1
3118 T T C C 1
3133 T T A A 1
3145 A A G G 1
3169 A A T T 1
3187 T C T C 2
3215 G G T T 1
3225 G G A A 1
3238 A A G G 1
3242 G G C C 1
3254 T C C T 3
3299 C T C T 2
3316 C C A A 1
3330 T C T C 2
3337 T T A A 1
3346 G G A A 1
3367 T T A A 1
3380 C C G G 1
3384 C C T T 1
3428 A A G G 1
3441 T C C T 3
3445 G G A A 1
3457 A G A G 2
3510 G G A A 1
3516 G G C C 1
3532 T T C C 1
3544 A A T T 1
3596 G A A G 3
3613 C C T T 1
3658 T T C C 1
3661 G G A A 1
3673 T T C C 1
3676 C C T T 1
3692 T A T A 2
3744 T T C C 1
3746 A G A G 2
3791 A A T T 1
3797 T T C C 1
3803 A A G G 1
3827 G G A A 1
3845 T T C C 1
3854 C C T T 1
3857 A T A T 2
3858 G G A A 1
3861 C C T T 1
3873 T C C T 3
3887 T T C C 1
3890 T T C C 1
3906 A G A G 2
3973 T T C C 1
3977 A A G G 1
3988 C C A A 1
4001 A A T T 1
4025 A A G G 1
4027 A A C C 1
4034 T T A A 1
4041 A A C C 1
4053 A A G G 1
4062 G G A A 1
4078 T C T C 2
4081 T T C C 1
4090 G G A A 1
4106 A G G A 3
4109 G G A A 1
4113 A C A C 2
4118 A A G G 1
4143 A A G G 1
4213 C T C T 2
4229 T T A A 1
4274 T T A A 1
4289 T T C C 1
4293 T T C C 1
4319 G G A A 1
4329 G G A A 1
4332 C C A A 1
4373 G G A A 1
4397 A A T T 1
4398 G A G A 2
4400 G G A A 1
4418 G G A A 1
4454 T T C C 1
4484 T T A A 1
4490 G A G A 2
4520 A A G G 1
4526 C C T T 1
4535 T T A A 1
4565 G G A A 1
4566 C C G G 1
4619 A A T T 1
4622 A G A G 2
4646 C C T T 1
4683 G G A A 1
4692 T C T C 2
4710 A A G G 1
4737 A A G G 1
4746 T T C C 1
4752 C C T T 1
4803 A G A G 2
4821 A A T T 1
4822 C C T T 1
4824 T T G G 1
4827 C C T T 1
4842 C T T C 3
4851 G G A A 1
4890 G G A A 1
4917 T T A A 1
4935 G G A A 1
4947 T C C T 3
4962 T T A A 1
4984 T T C C 1
4987 T T A A 1
5002 T T A A 1
5015 T C T C 2
5039 A G G A 3
5069 G G A A 1
5111 C T C T 2
5114 A A T T 1
5117 C T C T 2
5121 C C A A 1
5246 C C T T 1
5249 C T T C 3
5273 A A T T 1
5279 A A T T 1
5360 A A G G 1
5390 T T A A 1
5391 C T C T 2
5430 C C G G 1
5468 C C T T 1
5474 A A G G 1
5492 A A G G 1
5537 C C T T 1
5543 T T C C 1
5603 A A G G 1
5612 T C C T 3
5615 T C C T 3
5621 A G G A 3
5624 A A T T 1
5636 A A T T 1
5648 T T C C 1
5675 T C T C 2
5678 G G A A 1
5716 G A G A 2
5741 A A G G 1
5750 C C T T 1
5760 T T C C 1
5762 G G A A 1
5789 A A G G 1
5792 G G A A 1
5795 G G A A 1
5801 C T C T 2
5834 C C T T 1
5871 A A G G 1
5880 A A G G 1
5881 C C T T 1
5882 G T T G 3
5907 C C T T 1
5955 C C G G 1
6033 T T C C 1
6045 A A G G 1
6066 C C T T 1
6090 A T A T 2
6093 A G G A 3
6126 C C T T 1
6138 T C C T 3
6164 C T T C 3
6172 T T C C 1
6207 G G A A 1
6219 T T C C 1
6225 G G A A 1
6235 T T G G 1
6267 A G G A 3
6282 T T C C 1
6288 C T C T 2
6297 C C T T 1
6324 T C C T 3
6354 A A G G 1
6405 C C T T 1
6426 G G A A 1
6474 A A T T 1
6480 A A G G 1
6486 A A G G 1
6489 T T C C 1
6517 G G A A 1
6573 C C T T 1
6615 G A A G 3
6627 G G A A 1
6651 C C T T 1
6711 T T A A 1
6714 T T A A 1
6747 A A T T 1
6751 A A G G 1
6779 T T G G 1
6877 A A G G 1
6945 C C T T 1
6976 T T A A 1
6983 A A G G 1
6984 C C T T 1
6994 C T T C 3
7003 A A G G 1
7088 A A T T 1
7115 G G A A 1
7206 C T C T 2
7248 C T C T 2
7265 C C T T 1
7271 C C T T 1
7299 T T C C 1
7322 T T A A 1
7337 C C T T 1
7343 G G A A 1
7365 T A A T 3
7455 A A T T 1
7459 A A G G 1
7537 T T C C 1
7552 C C T T 1
7567 G G A A 1
7605 A A T T 1
7752 C T C T 2
7767 A A T T 1
7842 G G A A 1
7875 C C A A 1
7881 C C T T 1
7890 C T T C 3
7893 T T C C 1
7905 T T C C 1
7914 T C T C 2
7956 G G A A 1
7980 A A G G 1
7989 A A T T 1
8007 T T A A 1
8013 C C T T 1
8014 A A G G 1
8022 T C T C 2
8064 T T C C 1
8067 A A G G 1
8076 A A G G 1
8079 G G A A 1
8100 C C T T 1
8106 T T C C 1
8112 T T C C 1
8115 C C T T 1
8124 C T C T 2
8187 A A T T 1
8212 T T G G 1
8217 G G T T 1
8296 G A G A 2
8328 C C T T 1
8337 G G A A 1
8394 A A T T 1
8421 C C T T 1
8448 T T C C 1
8496 A A G G 1
8538 A A T T 1
8610 C C T T 1
8628 C C T T 1
8631 T T C C 1
8637 G G A A 1
8652 G G A A 1
8655 G G A A 1
8673 C T C T 2
8692 G G A A 1
8751 A A G G 1
8757 T C T C 2
8832 G G A A 1
8868 A A G G 1
8881 C C T T 1
8889 C C T T 1
8910 C C T T 1
8956 T T G G 1
8967 C T C T 2
9000 T T A A 1
9010 G G T T 1
9108 C T T C 3
9115 A A G G 1
9234 T T C C 1
9246 C T C T 2
9300 G G A A 1
9321 T T C C 1
9345 A A G G 1
9360 T T C C 1
9405 T T A A 1
9432 C C T T 1
9450 T T C C 1
9498 T T C C 1
9534 A A T T 1
9543 T T C C 1
9544 G G A A 1
9555 T T C C 1
9609 T T G G 1
9651 T C T C 2
9735 C C T T 1
9747 T C T C 2
9805 T T C C 1
9808 C C T T 1
9852 C C T T 1
9924 T C T C 2
9936 T C T C 2
9939 G G A A 1
10020 T C C T 3
10035 T C T C 2
10044 G A A G 3
10053 A A T T 1
10095 G G T T 1
10098 G A G A 2
10107 T C C T 3
10119 A G G A 3
10152 A T A T 2
10179 C T C T 2
10191 T T C C 1
10224 T T C C 1
10260 C T T C 3
10308 T T C C 1
10335 C C A A 1
10344 T T C C 1
10398 T C T C 2
10458 T C C T 3
10503 C T T C 3
10521 A A G G 1
10524 C T T C 3
10533 G G A A 1
10548 C C T T 1
10549 T T C C 1
10557 G G A A 1
10620 G G A A 1
10626 T T C C 1
10629 A T T A 3
10692 G G A A 1
10719 T T A A 1
10731 A G G A 3
10761 G G A A 1
10830 T T C C 1
10842 T T C C 1
10878 C C T T 1
10938 G G A A 1
10950 T C T C 2
10977 C C T T 1
10998 C C T T 1
11019 T T C C 1
11037 C T T C 3
11064 T T C C 1
11085 C C T T 1
11112 T T A A 1
11265 C C T T 1
11322 T T C C 1
11346 C C T T 1
11373 T T C C 1
11403 T T C C 1
11436 A A T T 1
11448 C T T C 3
11451 A A G G 1
11466 T C C T 3
11512 T C C T 3
11527 T T C C 1
11569 T T C C 1
11597 T C T C 2
11600 G G A A 1
11606 A A G G 1
11708 C C T T 1
11709 T T C C 1
11717 C C T T 1
11729 T T C C 1
11762 C C T T 1
11825 T C C T 3
11936 T C T C 2
11975 C T T C 3
12017 T C C T 3
12023 G A A G 3
12047 G G A A 1
12051 C T C T 2
12095 T C T C 2
12098 A A G G 1
12113 T A T A 2
12116 C T C T 2
12128 C T C T 2
12170 C C T T 1
12197 G G A A 1
12221 A A T T 1
12260 C C T T 1
12263 T A A T 3
12275 A A G G 1
12309 C C T T 1
12335 G G A A 1
12422 C C T T 1
12506 T C T C 2
12530 G G A A 1
12536 G G A A 1
12629 T T C C 1
12638 T T A A 1
12680 G G A A 1
12785 A A T T 1
12788 A A T T 1
12798 C T C T 2
12851 A A T T 1
12854 A A T T 1
12873 T T C C 1
12890 G G A A 1
13049 T T A A 1
13073 T T A A 1
13088 C C T T 1
13100 T T C C 1
13106 C C T T 1
13134 C C T T 1
13142 G G A A 1
13143 T T C C 1
13148 C C T T 1
13157 G G A A 1
13166 A A G G 1
13199 T T C C 1
13205 C C T T 1
13250 T T A A 1
13274 A A G G 1
13286 A A G G 1
13289 A A T T 1
13319 T T G G 1
13436 T C C T 3
13439 T T C C 1
13451 G G A A 1
13526 G A G A 2
13782 A A G G 1
13850 T C C T 3
13862 A G G A 3
13865 C C T T 1
13957 A A G G 1
13979 T T C C 1
13980 G G A A 1
14009 C C T T 1
14033 T T C C 1
14072 C C T T 1
14163 A A C C 1
14174 T C C T 3
14240 C C T T 1
14249 G A G A 2
14279 T T C C 1
14294 C C T T 1
14297 C C T T 1
14309 A A G G 1
14375 T A A T 3
14384 G A A G 3
14441 A A G G 1
14466 G A A G 3
14502 T C C T 3
14528 A A T T 1
14549 C C T T 1
14567 T T A A 1
14570 G G A A 1
14591 C C T T 1
14630 T T C C 1
14633 A A G G 1
14645 G G A A 1
14738 T T A A 1
14750 A A T T 1
14753 A T A T 2
14754 C C T T 1
14768 A A T T 1
14804 A A T T 1
14900 C C T T 1
14912 C C T T 1
14928 C T C T 2
14951 G G A A 1
15005 C C A A 1
15026 C C T T 1
15041 G G C C 1
15047 G G A A 1
15098 T T C C 1
15101 G G A A 1
15143 T T C C 1
15147 C C T T 1
15155 A A T T 1
15188 T T A A 1
15206 C C T T 1
15218 C C T T 1
15221 T T C C 1
15227 C C T T 1
15251 C C A A 1
15260 C C T T 1
15261 C C T T 1
15272 A A T T 1
15323 A A T T 1
15356 A A T T 1
15362 A A T T 1
15365 A A G G 1
15419 A A T T 1
15422 G G A A 1
15440 A A T T 1
15455 C C T T 1
15492 T T C C 1
15494 A A T T 1
15521 A A T T 1
15524 T T C C 1
15530 A A T T 1
15542 A A T T 1
15545 C C T T 1
15566 C T C T 2
15569 C C T T 1
15602 C C T T 1
15608 C T C T 2
15626 T C T C 2
15704 T C C T 3
15710 C C T T 1
15749 T T A A 1
15758 G G A A 1
15848 T C C T 3
15927 G G A A 1
15983 C C T T 1
16043 C T T C 3
16064 T T C C 1
16067 C C T T 1
16118 G A A G 3
16139 C C T T 1
16157 A A G G 1
16166 T T C C 1
16235 G G A A 1
16259 T T C C 1
16262 C C T T 1
16275 A C C A 3
16280 C C T T 1
16281 C T C T 2
16307 T T C C 1
16343 G G A A 1
16370 C C T T 1
16421 C C T T 1
16451 G G A A 1
16463 C T C T 2
16535 G G A A 1
16550 G G T T 1
16574 G G A A 1
16619 T T G G 1
16622 C C T T 1
16643 T C C T 3
16658 C C T T 1
16781 T T C C 1
16796 A A G G 1
16799 C C T T 1
16805 T T C C 1
16829 A A G G 1
16850 T T C C 1
16892 T T A A 1
16929 T T C C 1
16931 A A T T 1
16955 C C T T 1
16958 G G A A 1
16964 T C T C 2
16967 A A T T 1
16970 A A T T 1
16976 G G A A 1
16985 T T A A 1
16988 T T A A 1
16997 A A C C 1
17006 G G A A 1
17045 C C T T 1
17075 T T A A 1
17093 T T C C 1
17096 C C T T 1
17097 C C A A 1
17120 T T C C 1
17135 C C T T 1
17246 G G A A 1
17270 A A G G 1
17300 C C T T 1
17321 A A G G 1
17336 T T C C 1
17339 C T T C 3
17408 G A A G 3
17597 T T C C 1
17657 T T A A 1
17660 G G A A 1
17663 G G A A 1
17666 A T A T 2
17669 A A T T 1
17702 C T C T 2
17831 C C T T 1
17909 T T A A 1
17921 G G A A 1
17928 T T C C 1
17930 G G A A 1
17948 T G T G 2
17972 T T A A 1
18017 T T C C 1
18035 G G A A 1
18038 A A T T 1
18050 G G A A 1
18071 T T C C 1
18074 C T C T 2
18078 G A A G 3
18098 T C C T 3
18101 T T C C 1
18137 G G A A 1
18182 A A T T 1
18239 A A T T 1
18350 G G A A 1
18398 A G G A 3
18422 G G A A 1
18428 T C C T 3
18437 G G A A 1
18461 C C T T 1
18503 T T A A 1
18530 A A G G 1
18593 T T C C 1
18638 C C T T 1
18641 C T T C 3
18650 G G A A 1
18665 T T A A 1
18722 C C T T 1
18806 T T C C 1
18809 A G A G 2
18843 C C T T 1
18872 T T A A 1
18875 A A T T 1
18878 A A G G 1
18905 C C T T 1
18927 T T C C 1
18929 A A T T 1
18947 G A G A 2
18950 G A G A 2
18986 G G A A 1
19007 T T C C 1
19009 G A A G 3
19016 C C T T 1
19019 A A C C 1
19022 C C T T 1
19031 T T A A 1
19037 A A T T 1
19040 C C T T 1
19061 T T C C 1
19064 T T A A 1
19076 T T C C 1
19079 C T T C 3
19091 G G T T 1
19094 T T C C 1
19139 C C T T 1
19148 T T C C 1
19181 A A T T 1
19196 A A T T 1
19217 T T A A 1
19223 C C T T 1
19226 G G A A 1
19262 T C T C 2
19271 T T A A 1
19295 G G A A 1
19301 T T C C 1
19307 G G A A 1
19310 T T A A 1
19328 A A G G 1
19338 T T C C 1
19340 A A T T 1
19346 C C T T 1
19352 C T T C 3
19364 C T T C 3
19433 A A T T 1
19448 C C T T 1
19487 C C T T 1
19499 C C T T 1
19517 A A T T 1
19520 C C T T 1
19526 T T C C 1
19550 T T C C 1
19601 T T A A 1
19607 G G A A 1
19610 T T A A 1
19625 C C T T 1
19673 A A G G 1
19706 T T C C 1
19712 T T C C 1
19721 C C T T 1
19724 T T C C 1
19805 C C T T 1
19823 C C T T 1
19862 T T C C 1
19871 C C T T 1
19937 C T C T 2
19976 T T C C 1
19991 G A G A 2
20030 T C T C 2
20081 G A G A 2
20090 T T C C 1
20126 T C C T 3
20141 C T T C 3
20159 G G A A 1
20186 G G T T 1
20228 T T A A 1
20231 T T C C 1
20234 A A T T 1
20241 A A G G 1
20243 A A T T 1
20249 T T A A 1
20255 T T A A 1
20262 T T A A 1
20285 C C A A 1
20294 A A T T 1
20304 A A G G 1
20363 A G A G 2
20366 T T C C 1
20520 C C A A 1
20550 T C T C 2
20624 T C T C 2
20627 G A G A 2
20711 G G A A 1
20790 C C T T 1
20819 A A T T 1
20837 A A G G 1
20888 G G A A 1
20924 T T A A 1
20966 A G G A 3
20987 G G A A 1
20990 T G G T 3
21047 C A C A 2
21053 A T A T 2
21116 T T C C 1
21149 G G A A 1
21263 C C T T 1
21326 T T A A 1
21410 G G A A 1
21428 T T C C 1
21509 C T C T 2
21512 T C T C 2
21558 C C T T 1
21668 G A A G 3
21677 A T T A 3
21680 A A T T 1
21683 T T A A 1
21722 A G A G 2
21791 G G A A 1
21830 C C T T 1
21842 G G A A 1
21920 A A T T 1
21968 C C T T 1
22021 A A C C 1
22028 C C T T 1
22042 G G A A 1
22052 C C T T 1
22067 C C G G 1
22070 T T A A 1
22096 C C T T 1
22100 C C A A 1
22102 T T A A 1
22111 T C C T 3
22117 C C T T 1
22132 C C T T 1
22142 G G A A 1
22167 C T C T 2
22173 C T C T 2
22188 C C T T 1
22197 T C T C 2
22203 C C T T 1
22213 C C A A 1
22214 A A C C 1
22217 T T A A 1
22221 T A A T 3
22230 A A G G 1
22271 C C T T 1
22273 A G A G 2
22279 T C T C 2
22294 T T C C 1
22309 G G A A 1
22318 C T T C 3
22321 A A T T 1
22342 T T A A 1
22354 T T C C 1
22356 A A T T 1
22362 G G C C 1
22365 G G A A 1
22377 A A T T 1
22383 T T A A 1
22389 T T C C 1
22395 T T A A 1
22410 T T C C 1
22430 A A G G 1
22463 C C T T 1
22466 C C T T 1
22469 A A C C 1
22499 C C T T 1
22520 T T C C 1
22535 A G A G 2
22586 C C T T 1
22598 G G A A 1
22601 A A G G 1
22613 G G A A 1
22617 A A G G 1
22634 A A G G 1
22640 A A T T 1
22643 T T C C 1
22655 G G A A 1
22685 T C C T 3
22686 C C A A 1
22700 T T A A 1
22710 T T C C 1
22739 C C T T 1
22742 C C T T 1
22748 G G A A 1
22757 T T A A 1
22797 T T C C 1
22801 C C A A 1
22803 T T A A 1
22805 A A T T 1
22808 T T C C 1
22827 A A T T 1
22848 T T A A 1
22872 A A T T 1
22905 A A T T 1
22908 C C T T 1
22917 T T A A 1
22932 A A G G 1
22941 T T C C 1
22944 G G A A 1
22956 C C A A 1
22974 C T T C 3
22980 A A G G 1
22998 C C T T 1
23016 T T A A 1
23028 T A T A 2
23046 C T T C 3
23070 C C A A 1
23085 T A A T 3
23103 G A G A 2
23112 C T T C 3
23142 A A T T 1
23148 T T C C 1
23154 A T A T 2
23184 G G T T 1
23187 T T A A 1
23197 T T C C 1
23242 A A G G 1
23298 T C T C 2
23328 A T T A 3
23365 T G G T 3
23388 T C T C 2
23391 C T T C 3
23394 G T G T 2
23421 C T T C 3
23466 T C C T 3
23475 T T C C 1
23485 G C C G 3
23486 T A A T 3
23487 T A A T 3
23490 A T T A 3
23494 T C C T 3
23496 T A A T 3
23507 T A A T 3
23514 A T T A 3
23518 T A A T 3
23519 C G G C 3
23529 C T T C 3
23579 C C T T 1
23584 T T A A 1
23608 A A T T 1
23639 T T C C 1
23641 G G A A 1
23683 A T T A 3
23740 C T T C 3
23791 G G A A 1
23851 T T C C 1
23863 G G A A 1
23869 T T G G 1
23899 A A T T 1
23936 T T A A 1
23942 T T C C 1
23966 T T A A 1
24059 C C T T 1
24077 G A G A 2
24122 C T C T 2
24212 T G T G 2
24218 A T A T 2
24286 C C T T 1
24299 T C T C 2
24306 T T C C 1
24317 C T C T 2
24338 C T C T 2
24356 A A T T 1
24416 A G A G 2
24446 T C T C 2
24449 T T C C 1
24503 A G G A 3
24512 T T C C 1
24594 C T C T 2
24612 T C C T 3
24679 T T C C 1
24681 A A T T 1
24699 T T A A 1
24726 A T T A 3
24759 T T C C 1
24813 G G A A 1
24825 A G G A 3
24828 T T C C 1
24831 T T C C 1
24855 C C T T 1
24864 T T A A 1
24918 A A G G 1
24930 G G A A 1
24987 C C T T 1
25030 T C T C 2
25051 T T A A 1
25131 T T A A 1
25143 A A T T 1
25155 T C C T 3
25164 A A T T 1
25194 T T C C 1
25278 C C T T 1
25281 A A T T 1
25305 T T A A 1
25335 C T C T 2
25365 A T T A 3
25443 A A T T 1
25491 C T C T 2
25509 A G A G 2
25512 T T C C 1
25518 T C C T 3
25633 T C T C 2
25653 T T C C 1
25736 C C T T 1
25754 T T C C 1
25760 T T A A 1
25782 T C T C 2
25809 T C C T 3
25917 A A T T 1
25950 C T T C 3
26062 G A G A 2
26077 C C A A 1
26083 C C A A 1
26096 A A G G 1
26105 C C T T 1
26116 C T C T 2
26173 C T C T 2
26182 C C T T 1
26222 T C C T 3
26231 C C T T 1
26234 C C T T 1
26246 G G A A 1
26285 T T G G 1
26312 C C T T 1
26330 C T C T 2
26339 T C T C 2
26345 C T C T 2
26363 C T T C 3
26378 T T A A 1
26439 T T A A 1
26441 T T A A 1
26456 G G A A 1
26534 T T C C 1
26561 T C T C 2
27040 G G T T 1
27112 T A T A 2
27140 C C T T 1
27178 T T C C 1
27277 T C C T 3
27283 C C T T 1
27336 T T A A 1
27374 A A C C 1
27389 T T A A 1
27396 C T C T 2
27401 C C G G 1
27404 C C T T 1
27419 C C T T 1
27422 T T A A 1
27446 A G A G 2
27481 T T A A 1
27786 G G A A 1
27792 T C C T 3
27810 T C C T 3
27828 C C T T 1
27853 T T C C 1
27864 G G A A 1
27879 A A G G 1
27943 C C T T 1
27946 A G G A 3
28038 C T C T 2
28041 G A G A 2
28074 C T T C 3
28129 C C T T 1
28139 G G A A 1
28225 T T C C 1
28229 G A A G 3
28267 C C T T 1
28270 A A G G 1
28297 T T C C 1
28360 T T C C 1
28375 C C T T 1
28479 C C T T 1
28482 A A G G 1
28539 C C T T 1
28560 T T C C 1
28665 T C C T 3
28671 T T C C 1
28719 G G A A 1
28728 T T C C 1
29020 A A G G 1
29159 C T C T 2
29213 C C A A 1
29384 T C C T 3
29387 C T T C 3
29456 A G A G 2
29471 C C T T 1
29508 A A G G 1
29517 G G A A 1
29556 A G G A 3
29557 G A A G 3
29586 T A T A 2
29607 G G C C 1
29625 T C T C 2
29685 T C T C 2
29694 C T C T 2
29701 C C T T 1
29757 C C T T 1
29766 A A T T 1
29952 G A A G 3
29997 G G A A 1
30088 C C T T 1
30189 A A G G 1
Column3 Column4

C and D:
23475 T T C C 1
23485 G C C G 3
23486 T A A T 3
23487 T A A T 3
23490 A T T A 3
23494 T C C T 3
23496 T A A T 3
23507 T A A T 3
23514 A T T A 3
23518 T A A T 3
23519 C G G C 3
23529 C T T C 3
23579 C C T T 1