Normal Flora
Normal Flora
NIGARISH AHSAN
PHARM-D , MPHIL . (PU)
LECTURER PHARMACEUTICS
Normal Flora
• It is population of microorganism that infest the body
without causing disease
• Relation of m.o. to human may be
• Symbiosis – organism interacts in a close and permanent
association e.g. E.Coli always found in human intestine
• Mutualism – symbiosis beneficial to body and
microorganism e.g. Lactobacillus found in Vagina
• Commensalism – symbiosis in which only one population
benefits from association e.g. E.Coli produce certain
amount of Vitamin B and Vitamin K
Development of Normal Flora
• Normal flora – Guards of First Line of Defense
• Fetus of mother is microbe free but microorganism passes
to child from birth canal
• Additional organism enters when breathing begins and
upon first feeding
• Contact with other humans also expose the child to new
microorganism
• It continue throughout the life and undergoes changes in
response to internal environment of individual
Development of Normal Flora
• Internal tissues like blood brain muscles are free of
microorganism
• Surface tissues like skin and mucous membrane are
constantly in contact with the environmental m.o.
• Many of the bacteria are either pathogenic or
opportunistic pathogens
• Bacteria of normal flora present at one anatomical site
may not be pathogenic but if travel to other site will
become virulent
Normal Flora Examples
• Streptococous mutans is involved in dental plaque
formation – opportunistic bacteria
• Streptococcus pneumoniae is present in upper respiratory
tract, but if travels to lower respiratory tract it will cause
pneumonia
• Many different strains of E.Coli are non-virulent but some
of them are become causative agent for diarroea
Composition of Normal Flora
• Makeup of human flora is influenced by genetics, age,
sex, stress, nutrition and diet of the individual
• Bacterial flora is sufficiently constant among all individuals
• Human developmental changes like weaning, eruption of
teeth, onset and cessation of ovarian function invariably
effect the normal flora of intestinal tract, oral cavity and
vagina respectively
• In rough estimate human house about 1012 bacteria on
skin, 1010 bacteria in mouth, 1014 Bacteria in GIT
Normal Flora of Skin
• Density and composition of normal flora is varied
according to anatomical site
• High moisture content area – Axilla, Groin, toes facilitates
high density of growth
• Other sites have 100 or may be 1000 bacteria per square
inch
• Most bacteria of the skin found on superficial layer of
epidermis and upper part of the hair follicles are gram
positive cocci – Staphylococcus epidermidis and
Micrococcus species – and cornybacteria such as
Propionibacterium species
Normal Flora of Skin
• Usually they are non-pathogenic, mutualistic and
commensal
• They produce fatty acid on skin surface to inhibit the
growth of fungi and yeast on skin
• Propionibacterium acne – normal inhabitant of skin, when
trapped in hair follicle starts inflammation and acne
Normal Flora of Conjunctiva
• A variety of bacteria may be cultivated from normal
conjuctivae, but the number of organism is usually small.
• Staphylococcus epidermidis, certain coryneforms,
Staphylococcus aureus, some streptococci, Haemophilius
species are present
• Neisseria gonorrhoeae and Chlamydia trachomatis are
specifically involve in infection of conjunctiva.
• The conjuctiva is kept moist and healthy by continuous
secretions from lachrymal glands .
• Blinking wipes the conjuctiva every few seconds
mechanically washing away foreign objects including
bacteria .
Normal Flora of Respiratory Tract
• A large number of bacterial species colonize the upper
respiratory tract.
• The nostrils are heavily colonized with Staphylococcus
epidermidis, certain coryneforms, and also with certain
Staphylococcus aureus,
• The pharynx (throat) is normally colonized by streptococci and
various gram negative cocci.
• Streptococcus pneumoniae, Streptococcus pyogenes,
Haemophilus influenza and Neisseria meningitides colonize
the pharynx.
• If the respiratory tract epithelium becomes damaged as in
bronchitis or viral pneumonia, the individual may become
susceptible to infection by pathogens such as H. influenzae or
S.pneumoniae descending from nasopharynx.
MICROBIOLOGY OF
WATER
Introduction
• Water is the medium of life.
• All organisms are composed
primarily of water.
• Liquid water is the medium in
which all cellular chemical
reactions occur.
• Essential for survival and growth
of organism.
• The drinking water is mostly obtained from surface
sources i.e rivers streams lakes.
• Such natural supplies are likely to be polluted with
domestic and industrial wastes.
• A greater quantity of water is required , and the used
water must be disposed of, by returning it .
• Water is a potential carrier for pathogenic
microorganisms. These pathogens can cause various
infections like typhoid, dysentery , cholera.
• It is therefore necessary to employ
• 1) treatment facilities that purify waste water prior to its
disposal .
• 2) water purification methods that provide safe drinking
water .
Water purification
Potable water:
Water that is free of
Disease producing microorganisms
Chemical substances and fit for drinking.
contains
• Fungi
• Protozoa
• Algae
• Bacteria , and
• Viruses
ml
Water born diseases
• Water can act as a vector for the transmission of bacterial, viral
and protozoan agents which cause a variety of diseases (mainly
intestinal)
Round worm
Tape worm
Hook worm
Whip worm
Water-associated diseases can be classified
under 4 different categories: -
1. Water-borne diseases
2. Water-washed diseases
3. Water-based diseases
4. Water-related diseases
A. Water-borne diseases
❑ They are produce by ingestion of contaminated water.
water);
• CLORINATION:
• Chlorine gas ( an active oxidizing agent) is added to
water.
• Chlorine is continuously added until a residue is present.
• Standard permissible residue is 0.2 to 1.0 parts of chlorine
/ million ( PPM)
• Under these conditions , most remaining microorganisms
die within 30 minutes.
• Additional Treatments :
• Sometimes water is softened by removing Mg and Ca and
other salts.
• Water may also be flourinated which help to prevent from
tooth decay
• How can microorganisms be made useful during
water treatment:
• Microorganisms can be used to decompose contaminants
in fresh water.
• This kind of water treatment is called biological water
treatment .
• During biological water treatment microorganisms
breakdown organic matter , nitrates and phosphates .
SOIL MICROBIOLOGY
Soil Microbiology:
⚫ A study of the microorganisms in soil, their functions,
and the effect of their activities on the character of the
soil and the growth and health of plant life.
⚫ It is believed that between two and four billion years
ago, the first ancient bacteria and microorganisms came
about in Earth's primitive seas. These bacteria could fix
nitrogen, in time multiplied and as a result released
oxygen into the atmosphere.
• This release of oxygen led to more advanced microorganisms.
• Organic matter.
• Mineral matter.
• Soil air.
• Soil water.
• Soil microorganisms.
Classification of Soil Microorganism
•First exploration
of Nitrobacter diversity in soils by a
PCR
Nitrogen fixation
• Bacteria are responsible for the process of nitrogen
fixation, which is the conversion of atmospheric
nitrogen into nitrogen-containing compounds (like
ammonia) which can be used by plants to uptake.
• Autotrophic bacteria, or bacteria that derives its
energy making its own food by oxidation, like
the Nitrobacters species are responsible for nitrogen
fixation.
• These bacteria are very important because almost
every plant and organism require nitrogen in some
way, and would have no way of obtaining it if not for
nitrogen-fixing bacteria.
Nitrogen Cycle:
•The nitrogen cycle is the biogeochemical
cycle by which nitrogen is converted into
various chemical forms as it circulates among
the atmosphere, terrestrial, and marine
ecosystems.
•Nitrogen is present in the environment in a
wide variety of chemical forms including
organic nitrogen,
• Ammonium, Nitrite ,Nitrate , nitrous oxide ,
Nitric oxide or inorganic nitrogen gas .
• Atmospheric nitrogen must be processed, or "fixed", in a
usable form to be taken up by plants.
• This cycle consists of following steps.
• Nitrogen Fixation
• Assimilation.
• Ammonification
• Nitrification
• Denitrification
• 1) NITROGEN FIXATION:
• Nitrogen fixation is done by free-living or symbiotic bacteria
known as diazotrophs.
• These bacteria have the nitrogenase enzyme that combines
gaseous nitrogen with hydrogen to produce ammonia, which is
converted by the bacteria into other organic compounds.
• 2) ASSIMILATION:
• Plants take nitrogen from the soil by absorption through their
roots as amino acids, nitrate ions, nitrite ions, or ammonium
ions. Most nitrogen obtained by terrestrial animals can be
traced back to the eating of plants at some stage of the food
chain.
• 3) AMMONIFICATION
• When a plant or animal dies or an animal expels waste, the
initial form of nitrogen is organic. Bacteria or fungi convert the
organic nitrogen within the remains back into ammonium , a
process called ammonification.
• 4) NITRIFICATION:
• The conversion of ammonium to nitrate is performed primarily
by soil-living bacteria and other nitrifying bacteria. In the
primary stage of nitrification, the oxidation of ammonium is
performed by bacteria such as the Nitrosomonas species,
which converts ammonia to nitrites .
• Other bacterial species such as Nitrobacter, are responsible
for the oxidation of the nitrites into nitrates.
• It is important for the ammonia to be converted to nitrates or
nitrites because ammonia gas is toxic to plants.
• 5) DENITRIFICATION:
• Denitrification is the reduction of nitrates back into
nitrogen gas (N2), completing the nitrogen cycle.
• This process is performed by bacterial species such as
Pseudomonas and Clostridium in anaerobic conditions.
• Wound infections
THE
LIVING SOIL: PROTOZOA
Scope and Importance of Soil
Microbiology
• Living organisms both plant and animal types
constitute an important component of soil.
❑ Dust particles
❑ Droplet nuclei
• Fate of Airborne microorganisms:
• The ultimate fate of airborne microorganisms depends
upon various factors:
❑ Humidity
❑ Sunlight
❑ Temperature
❑ Size of particles bearing microorganisms
❑ Nature of microorganisms i.e. the degree of susceptibility
or resistance of particular species to new physical
environment.
❑ Indoor air
Example: Tubercle bacilli
• Outdoor Air
• Algae
• Protozoa
• Yeasts
• Molds
❑ Mold spore are predominant,
e.g cladosporium
❑ Bacterial species are,
Virus diseases (virus type in brackets) Bacterial diseases (bacterial name in brackets)
Smallpox (Variola)
Several other diseases, below, are acquired by inhaling particles from environmental sources, not
directly from an infected person.
Disease Source
Acute allergic alveolitis (various fungal & Fungal or actinomycete spores from decomposing
actinomycete spores) organic matter (composts, grain stores, hay, etc.)
Aspergillosis (Aspergillus fumigatus, A. flavus, A. Fungal spores inhaled from decomposing organic
niger) matter
ULTRAVIOLET RADIATION:
• This method has great potential value for reducing the
microbial flora of air.
• It is done by following ways :
1. Direct irradiation.
Used in unoccupied rooms.
• e.g. aseptic filling rooms for pharmaceutical preparations
• In sterile rooms ultraviolet lights are left ON when the
room is not in use.
2. Indirect Irradiation.
e.g. occupied rooms, offices, wards, hospital nurseries ,
school room e.t.c.
CHEMICAL AGENTS:
• Chemical substances vaporized into air of room are
effective in reducing the microbial flora.
• Chemicals are dispersed as aerosol and show its anti
microbial action.
• Characteristics of chemical agent as germicide:
• It should be highly bactericidal.
• It should be effective at normal room temperature and
humidity.
• It should not stain , discolor otherwise damage objects.
• Examples:
• Triethylene glycol
• Lactic acid
• Formaldehyde
• Resorcinol e.t.c
• FILTRATION:
• Use of cotton plug
• Air filters
LAMINAR AIR FLOW
• A laminar flow cabinet or laminar flow closet designed to
prevent contamination biological samples, or any particle
sensitive materials , air is passed through a HEPA (High
Efficiency Particulates Air) filter which removes all
airborne contamination to maintain sterile conditions.
• A laminar flow hood consists of a filter pad, a fan and a
HEPA (High Efficiency Particulates Air) filter
• The fan sucks the air through the filter pad where dust is
trapped
• After that the prefiltered air has to pass the HEPA filter
where contaminating fungi, bacteria, dust etc are removed
• Sterile air flows into the working area where you can do all
your work without risk of contamination.