BIOSETUP LIFESCIENCES

A Hub for Scientific Research and Learning

ORGANISES

R
ONLINE HANDS-ON SUMMER INTERNSHIP 2024

P R O G R A M M I N G F O R A DVA NC E D
G E N O M IC STAT IST IC A L A N A LYS IS A N D
B I O L O G IC A L D ATA V IS U A L I Z AT I O N

B A T C H E S S T A R T I N G F R O M 3 RD J U N E T O 3 RD J U LY , 2 0 2 4
TIMING 8.00 PM TO 9:00 PM

SPEAKERS
A
A

Y. MOHAMMED IQBAL DR. S. PEERBASHA

 
           
         
  
    
 

ABOUT THE COURSE

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ABOUT BIOSETUP:
‘A PARTNERSHIP IN RESEARCH & LEARNING’
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BENEFITS AFTER PURSUING THE HANDS-ON

SUMMER INTERNSHIP
DATA PROFICIENCY: Master fundamental and advanced data manipulation
techniques in R, essential for analyzing complex datasets commonly encountered in life
sciences research.
VISUALIZATION SKILLS: Develop the ability to create informative and visually ap-
pealing plots, enabling clearer communication of findings and insights.
STATISTICAL ANALYSIS: Acquire the knowledge and tools necessary to perform sta-
tistical analysis, including hypothesis testing, regression modeling, and survival analysis.
BIOINFORMATICS COMPETENCE: Explore bioinformatics applications using R for
sequence analysis, genomic data analysis, and gene expression analysis.
MACHINE LEARNING APTITUDE: Gain exposure to machine learning algorithms and
techniques for classification, regression, and text mining, expanding your analytical
toolkit.
ADVANCED TECHNIQUES: Learn advanced R programming techniques for optimiza-
tion, error handling, and reproducible research, ensuring efficiency and accuracy in your
workflows.
PROFESSIONAL DEVELOPMENT: Elevate your career prospects by acquiring in-de-
mand skills relevant to academia, pharmaceuticals, biotechnology, and other life scienc-
es sectors.
 COURSE MODULE

MODULE 1: M O D U L E 2 : R DATA
INTRODUCTION OF R STRUCTURES
PROGRAMMING
» Vectors: creation, indexing, and basic
» R and its applications in life sciences
operations
» Installing R and RStudio
» Factors and their significance in life
» Basic operations in R: arithmetic
science data analysis
operations, variables, data types
» Data frames: creating, subsetting,
» Introduction to RStudio interface
and manipulating data frames

MODULE 3: IMPORTING MODULE 4:

A N D E X P O R T I N G DATA DATA V I S UA L I Z AT I O N
» Reading data from different file W I T H BA S E R
formats (e.g., CSV, Excel, text files) » Introduction to basic plotting
» Writing data to various file formats functions in R.
» Handling missing data in R » Creating scatter plots, bar plots,
histograms, and box plots
» Customizing plots: adding titles,
MODULE 5: labels, and legends
I N T R O D U C T I O N TO G G P LOT2
» Overview of the ggplot2 package
MODULE 6:
» Grammar of graphics and layered
plotting DATA M A N I P U L AT I O N
» Creating aesthetically pleasing and W I T H D P LY R
informative plots » Introduction to the dplyr package for
data manipulation
M O D U L E 7 : WO R K I N G » Filtering, selecting, arranging, and
W I T H DAT E S A N D T I M E S summarizing data
» Importing and handling date-time » Chaining operations using the pipe
data in R operator (%>%)
» Performing operations on date-time
objects
» Extracting components from
date-time data
MODULE 8: MODULE 9:
S TAT I S T I C A L A N A LYS I S LINEAR MODELS
WITH R » Introduction to linear regression
» Introduction to statistical analysis in R models in R
» Descriptive statistics: mean, median, » Fitting linear models to data
standard deviation, etc. » Interpreting model output and
» Hypothesis testing: t-tests, ANOVA assessing model fit

M O D U L E 1 0 : LO G I S T I C MODULE 11:
R EG R E S S I O N S U RV I VA L A N A LYS I S
» Basics of logistic regression » Introduction to survival analysis
» Fitting logistic regression models to concepts
binary data » Kaplan-Meier survival curves
» Model interpretation and diagnostics » Cox proportional hazards regression

MODULE 12: MODULE 13:

B I O I N F O R M AT I C S HANDLING GENOMIC
A P P L I C AT I O N S DATA
» Introduction to bioinformatics and its » Importing and preprocessing
relevance in life sciences genomic data in R
» Using R for sequence analysis, » Basic genomic data analysis
alignment, and motif discovery techniques
» Visualization of genomic data

MODULE 14: GENE EX- MODULE 15:

P R E S S I O N A N A LYS I S I N T R O D U C T I O N TO
» Introduction to gene expression data M AC H I N E L E A R N I N G
analysis » Overview of machine learning in R
» Differential expression analysis using » Classification and regression using
R packages machine-learning algorithms
» Visualization of gene expression data » Model evaluation techniques
 MODULE 16: M O D U L E 1 7 : N E T WO R K
TEXT MINING A N A LYS I S
» Introduction to text mining and » Introduction to network analysis
natural language processing concepts
» Pre-processing text data in R » Building and visualizing networks
» Basic text mining techniques: in R
tokenization, stemming, and » Basic network analysis metrics
sentiment analysis

M O D U L E 1 8 : A DVA N C E D MODULE 20:

DATA V I S UA L I Z AT I O N REPRODUCIBLE
» Interactive visualizations using RESEARCH WITH
packages like plotly and ggplotly R M A R K D OW N
» Creating dashboards with Shiny
» Introduction to RMarkdown for
dynamic documents
» Generating reports, presentations,
M O D U L E 1 9 : A DVA N C E D
and websites with RMarkdown
R PROGRAMMING » Integrating R code, text, and
T EC H N I Q U E S visualizations in RMarkdown
» Writing functions in R documents
» Debugging and error handling
» Optimizing R code for performance

WHY TO REGISTER
• Tailored for Life Sciences: Designed exclusively for life science professionals, this
course addresses the specific data analysis needs of the field.
• Hands-On Learning: Participants will engage in practical exercises and projects, rein
forcing concepts through real-world applications.
• Industry-Relevant Skills: Gain proficiency in R programming, a valuable skill sought
after in academia, research, and industry.
• Career Advancement: Enhance your CV with practical skills highly relevant to today's
data-driven life sciences landscape.
 HOW TO DO REGISTRATION

Send your details:

Name, Gender, Email id, College /University, Contact no. and Send your
details of the fee submitted screenshot to Whatsapp no. 6203893780.

COURSE FEE: RS 1500/-(INR)

MODE OF PAYMENT
                                                    
  
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10% DISCOUNT
FOR 5 MEMBERS GROUP
REGISTRATION &
REGISTRATION FROM
BIOSETUP LIFE SCIENCES VOL-
UNTEERS REFERRAL CODE.
PAY�@�RS.�1350/-

Last Date of Registration:- 2 ND JUNE , 2024�(SUNDAY)

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