Application of Habitat Suitability Model Coupling With High Precision Hydrodynamic Processes
Application of Habitat Suitability Model Coupling With High Precision Hydrodynamic Processes
Application of Habitat Suitability Model Coupling With High Precision Hydrodynamic Processes
Ecological Modelling
journal homepage: www.elsevier.com/locate/ecolmodel
A R T I C L E I N F O A B S T R A C T
Keywords: The habitat suitability model is coupled with the two-dimensional high-precision hydrodynamic model in this
High-precision hydrodynamic model paper. In the model, finite volume method (FVM) with Godunov type is adopted to solve the two-dimensional
Habitat suitability model hydrodynamic process, which has good robustness and second-order temporal and spatial accuracy; Habitat
Weighted usable area
suitability model is constructed by habitat suitability index based on IFIM theory. Meanwhile, the introduction of
Discharged flow
GPU acceleration technology greatly improves the simulation efficiency. Combined with the results of River2D,
Habitat suitability index
the results of this model have good accuracy. The model was applied to simulate the spawning habitat of
Gymnocypris eckloni in the lower reaches of a hydropower station in the Upper Yellow River, and the reasonable
discharged flow of hydropower station required for a good spawning habitat was 74 m3/s. It increased by
53.377% compared with the average annual discharge in May of the natural river. The evaluation of the
spawning habitat of Gymnocypris eckloni provides a scientific basis for protecting the integrity of river ecosystem
in this paper.
1. Introduction ecological operation and river ecological restoration. The United States
was the first to put forward the concept of eco-environmental water flow
The construction of a large number of water conservancy projects not requirement in the 1870 s, which stipulated that in order to avoid river
only ensures the reasonable allocation of water resources, but also plays ecosystem degradation, rivers should maintain the minimum ecological
a role in other benefits, thus becoming the basic guarantee for the sus flow (Covich, 1993; Xu et al., 2004). A large number of calculation
tainable and healthy development of the economy and society (Mao and methods emerged, including hydrology methods, such as 7Q10, Tennant
Dai, 2016). However, rivers are also the natural space for the survival of and Basic Flow method et al., hydraulic methods, such as wetted
various aquatic organisms (Cheng, 2008). With the increasing utiliza perimeter method and R2-Cross, and habitat modeling simulation
tion of river water resources, water ecological problems are gradually method, such as Instream Flow Incremental Methodology (Tennant,
emerging, the construction of reservoirs lead to the changes in river 1976; Palau and Alcazar, 1996; Gippel and Stewardson, 1998; Tarme,
hydrological regime, sharp decrease in biodiversity and degradation of 2003; Bovee, 1982).
local ecological functions (Foulger and Petts, 1984; Pringle, 2003; Habitat model simulation methods are also most widely used
Caissie, 2006); Meanwhile, dams block the passage of migratory fish, methods in the world. Instream flow incremental methodology (IFIM)
affecting the communication between species; In addition, the rapid was the earliest applied method among which to evaluate the impact of
change of river level also causes the alternating exposure and inundation the discharge changes on fish habitat, so as to improve ecological
of shoals, which affects the habitat and spawning of fish (Zhang, 2017; environment by regulating discharge (Bovee, 1982; Rhomas, 1998).
Li et al., 2013; Ma et al., 2020). With the proposal of habitat suitability index (HSI), it had been
To alleviate the stress of water conservancy project on river applied in more than 80% of the global habitat models (Yi et al., 2010),
ecosystem, people have taken a series of the measures of reservoir to determine the relationship between indicative target species and
* Corresponding Author.
E-mail address: [email protected] (J. Hou).
https://doi.org/10.1016/j.ecolmodel.2021.109792
Received 18 August 2021; Received in revised form 7 October 2021; Accepted 21 October 2021
Available online 1 November 2021
0304-3800/© 2021 Published by Elsevier B.V.
L. Yang et al. Ecological Modelling 462 (2021) 109792
⎡ ⎤ ⎡ ⎤ ⎡ ⎤ ⎡ / 0 √̅̅̅̅̅̅̅̅̅̅̅̅̅̅̅ ⎤
h uh / vh
− gh∂ z ∂x − C u u2 + v2 ⎦
q = ⎣ uh ⎦, F = ⎣ u2 h + gh2 2 ⎦, G = ⎣ uvh / ⎦, S = ⎣ b
/
f
√ ̅ ,
̅̅̅̅̅̅̅̅̅̅̅̅̅̅ (2)
vh uvh v2 h + gh2 2 − gh∂zb ∂y − Cf v u2 + v2
2
L. Yang et al. Ecological Modelling 462 (2021) 109792
∑
n ( ) F(q)⋅n is the flux vector normal to the boundary; k is the number of
WUA = CSI HSIvel i , HSIdep i , HSIsub i × ai (3) control cell edges;lk is the length of side k in the control cell i; u,vare the
i=1
velocity in x and y directions respectively, m/s; h is water depth, m; nx
Combined habitat suitability index (CSI) can be obtained by the and ny are the unit outward vectors in the x and y directions of the
following methods, considered boundary, respectively; gis the gravitational acceleration, m/
( ) s2.
CSI HSIvel i , HSIdep i , HSIsub i = HSIvel i × HSIdep i × HSIsub i (4) In this model, the Van Leer approximate Riemann solver with the
contact wave restored (HLLC) is adopted to compute the fluxes of mass
( ) ( )1/3
CSI HSIvel i , HSIdep i , HSIsub i = HSIvel i × HSIdep i × HSIsub i (5) and momentum at the interface, which automatically satisfies the
Godunov scheme and is the most suitable numerical solution for the dry
( ) ( ) and wet boundary (Marche, et al., 2007; Hou et al., 2013a). The bottom
CSI HSIvel i , HSIdep i , HSIsub i = min HSIvel i , HSIdep i , HSIsub i (6) slope source term is treated by the bottom slope flux method, which is
well coordinated with the interface flux and satisfies the condition of full
where, WUA is the weighted usable area, m2; CSI is the combined stability, and combined with non-negative depth reconstruction, the dry
habitat suitability index; i is the number of control cell; ai is the area of and wet boundary problems can also be effectively dealt with (Bermu
control cell i, m2; veli ,depi ,subi are water depth, velocity, the substrate in dez and Vazquez, 1994), In this simulation, the grid cell judgment
the control cell i, respectively; HSIveli , HSIdepi , HSIsubi are the suitability condition of dry and wet water depth is 0.000 001 m. Explicit - implicit
index of water depth, velocity, the substrate in the control cell i, friction treatment method with better stability is used to calculate the
respectively; Eq. (4) represents the result of comprehensive action of frictional flux term to achieve implicit computation without iteration,
three habitat factors; Eq. (5) represents the compensating influence the calculation accuracy and efficiency are considered (Hou et al.,
among habitat factors when a certain habitat factor is unfavorable; Eq. 2013b). Meanwhile, MUSCL method is used to reorganize the variables
(6) represents CSI is determined by the most unsuitable habitat factor with spatial second order accuracy (Hou et al., 2014). Runge-Kutta
among three habitat factors. method is used to implement time step of time variable to obtain sec
In this paper, only three habitat factors were considered, namely ond order time accuracy.
water depth, discharge and the substrate. If any of the selected habitat In addition, CFL (Courant Friedrichs Lewy) condition is used to limit
factors were not unsuitable, the habitat of organisms would be greatly the time step to maintain its good stability. The time step formula is as
affected. Thus, From the perspective of the most unfavorable habitat follows (Courant et al., 1967),
factors, Eq. (6) was adopted in this paper to obtain the comprehensive ( )
suitability index. Ri
Δt = CFLmin √̅̅̅̅̅̅̅̅̅̅̅̅̅̅ ̅ √̅̅̅̅̅̅ (11)
u2i + v2i + ghi
3. Numerical solution method
where, Ri is the minimum distance from the center of control cell to the
3.1. Numerical solution of hydrodynamic model boundary; i is the number of control cell; u,v are the velocity in x and y
directions respectively, m/s; h is water depth, m; CFL is called the
In solving two-dimensional shallow water equations (SWES), usually Courant and has a value from 0 to 1. With the increase of Coulomb
finite volume method, finite difference method and finite element number, the convergence speed of grid computing is gradually accel
method are adopted, a multi-speed discrete Boltzmann method was erated and the stability is gradually decreased. CFL is defined as 0.5 in
proposed in recent years, but it is not widely adopted (Rocca et al., this model.
2020). The cell centered finite volume (CCFV) method of Godunov
scheme is used in this paper (Hou et al., 2015), the study area is divided 3.2. GPU parallel computing technology and model coupling
into triangular or quadrilateral computing units, and the control volume
of cell centered Finite Volume (CCFV) is used as the cell. In control cell i, To solve the problem of large amount of calculation, low calculation
the integral form of the governing equations is expressed as (Hou et al., efficiency and calculation divergence caused by high-precision terrain,
2013a), GPU (Graphic Processing Unit) acceleration technology based on CUDA
∫
∂q
∫ (
∂F ∂G
) ∫ (Compute Unified Device Architecture) is adopted in this model, which
dΩ + + dΩ = SdΩ (7) is developed by NVIDIA and written in C++ language (Liang et al.,
Ω ∂t Ω ∂x ∂y
2016). Compared with CPU, GPUs can provide tens or even hundreds of
Ω
Based on divergence theorem, it becomes, times more power than CPUs in parallel computing as the structure of
∫
∂q
∮ ∫
( GPU is relatively simple, the number of threads and registers is far more
Ω + F(q)⋅ndΓ = Sb + Sf )dΩ (8) than that of CPU; mainstream GPUs are more than 10 times that of CPUs
Ω ∂t
of the same period in terms of single-precision floating-point processing
Γ Ω
In the rectangular control cell in this paper, the flux integral is: power due to the powerful floating-point processing capacity. CPU and
∮ ∑
4
F(q)⋅ndΓ = Fk (q)⋅nk lk (9)
Γ k=1
where, t represent the time; q are the vectors of flow variables; Ω is the
volume of control cell i; Γ is the boundary of control cell; n denotes the
unit outward vector normal to the considered boundary and is defined; Figure 1. CPU and GPU architecture.
3
L. Yang et al. Ecological Modelling 462 (2021) 109792
GPU architecture as shown in Figure 1. In actual execution, the program distribution during the main spawning period (May) was studied to
code of GPU acceleration technology based on CUDA includes host code reflect the habitat conditions of the river. The average annual discharge
running on CPU and device code running on GPU, while the data of natural river in May was 434 m3/s; During the operation of hydro
transfer between CPU and GPU is implemented by cudamemcpy func power station, the average annual discharge of normal (392.8 m3/s) and
tion (Smith and Liang, 2013). The CPU and GPU architecture is shown in dry years (352.7 m3/s) in May should be considered as the discharged
Figure 1. flow of hydropower station to ensure the fish breeding in the down
Based on CUDA architecture the C++ language is used to read the stream channel. In addition, the minimum discharge of the river reach
grid, initial and boundary conditions and output the results and to under the dam should be no less than 63.6 m3/s to maintain aquatic
realize GPU high-speed parallel loop computing calculation which is ecological stability and river landscape. When the high-precision two-
included data initialization, memory space allocation, flux calculation dimensional hydrodynamic model was used to simulate the distribution
and model coupling, etc. of water depth and velocity in river, the discharge was the upstream
This simulation is performed on a PC equipped with graphics card of boundary condition and the corresponding water level was the down
NVIDIA GeFrce RTX 2080. The GPU acceleration technology imple stream boundary condition. Water level downstream under different
mentation process and model coupling is shown in Figure 2. discharges was shown in Table 1.
4.1. Overview and Basic Data Through the investigation of aquatic experts, the ecological habits
and hydraulics characteristics of the habitat of Gymnocypris eckloni were
To promote the local economic development of Qinghai province, it collected and summarized, and the spawning period from early May to
is proposed to build a hydropower station on the main stream of the June of it was obtained. May was used as the main spawning period in
Upper Yellow River, which is about 5 km upstream of Laja town, Maqin this study and focused on the suitability of it to the velocity, water depth
county, Qinghai province. The dam site of the hydropower station and the substrate. The suitability of the velocity, water depth and the
controls a basin area of 98,346 km2 with mean annual discharge is 530 substrate of Gymnocypris eckloni during spawning period is: the suitable
m3/s, and the normal water level for it is 3275 m, the corresponding water depth 0.1 to 2.0 m and the optimal water depth is 0.4 to 1.2 m; the
storage capacity is 1.482 billion m3, of which the regulated storage ca suitable velocity is 0.25 to 1.5 m/s and the optimal velocity is 0.5 to 1.0
pacity is 706 million m3. The reach of 1~ 8 km downstream of the dam m/s; the substrate condition of this river reach is sand and gravel mixed
of this hydropower station is a more important fish habitat and a major with sediment, which shows that the suitable substrate condition is sand
spawning area based on the results of fish habitat survey. To protect the gravel and fine sand and distributed in this reach.
downstream river ecological environment, the river reach was taken as Habitat suitability index (HSI) was adopted to quantify the fish
the study area, which twists and turns and is like Chinese character “ji” habitat preference, which was expressed as a value between 0 and 1, the
(meaning a few) in plane, the location of it was shown in Figure 3. higher the value, the better the adaptability. Based on this, the suit
As an advanced species of aquatic organisms, fish habitat indicates ability index of hydraulic habitat parameters was determined and the
the quality of river ecological environment. In this reach, Gymnocypris suitability curves of major hydraulic factors was drawn of Gymnocypris
eckloni was selected as a target fish for aquatic organisms and its habitat eckloni during spawning period, as shown in Figure 4.
4
L. Yang et al. Ecological Modelling 462 (2021) 109792
Figure 4. Suitability curves of major hydraulic factors of Gymnocypris eckloni during spawning period (a) Water depth; (b) Velocity;(c) Substrate
5
L. Yang et al. Ecological Modelling 462 (2021) 109792
May, the average annual discharge of normal (392.8 m3/s) and dry years
(352.7 m3/s) in May and and the proposed minimum discharge of 74
m3/s was considered to further determine the reasonable discharged
flow of hydropower station. The high-precision two-dimensional hy
drodynamic model (GAST model) was adopted to simulate the distri
bution of water depth and flow velocity in the study area. The study
reach was divided into 404,544 rectangular grids with a cellsize of 5m
using ArGIS software to generate high-precision terrain files for GAST
models. The distribution of water depth and flow velocity was shown in
Figure 7.
Based on the simulation results of water depth and velocity under
different discharges, the average water depth and velocity increased
Figure 5. Comparison between simulated and measured water levels of each
significantly when the discharge increased from 74 m3/s to 352.7 m3/s,
section in the study area
while there was little difference between 352.7 m3/s, 392.8 m3/s and
434 m3/s. When the discharge was 74 m3/s, the average water depth
rationality of the simulation results of GAST model. River2D is called the was about 1.20 m and the average velocity was about 0.38 m/s; while
two-dimensional depth averaged model of river hydrodynamics and fish the discharge was 434 m3/s, the average water depth was about 2.31 m
habitat, which uses the finite element method to numerically solve the and the average velocity was about 0.59 m/s. It could thus be seen that
depth-average model equations. The discharges of 26.5 m3/s, 53 m3/s, the average water depth was about 48.05 % of the natural May 434 m3/
74 m3/s, 79.5 m3/s, 106 m3/s, 159 m3/s, 212 m3/s, 318 m3/s, 434 m3/s, s, and the average velocity was about 35.59 % of that when the
530 m3/s, 689 m3/s, 848 m3/s, 1060 m3/s were selected to calculate the discharge was 74 m3/s.
effective habitat area (which was represented by the Weighted Usable
Area) of Gymnocypris eckloni. The simulation results based on GAST
5.2. Combined habitat suitable index
model and River2D model were shown in Table 2, and the relationship
between the discharges were obtained based on the simulation of GAST
Due to the substrate condition of this river reach is sand and gravel
model and River2D model, as shown in Figure 6.
mixed with sediment, it meets the substrate condition of Gymnocypris
As could be seen from Table 2 and Figure 6, the relationship between
eckloni spawning, the habitat suitable index of the substrate in this river
the weighted available area of spawning habitat and the discharges
reach is 1. Based on the simulation results of three hydraulic factors,
based on GAST model and River2D model was almost identical. the
namely water depth, velocity and substrate, a combined habitat suit
results showed that the effective habitat area begins to increase with the
ability index (CSI) was obtained by coupling fish habitat simulation
increase of the discharge, and when it reached the peak, the effective
method to reflect the habitat distribution of Gymnocypris eckloni during
habitat area began to decrease with the increase of the discharge.
spawning period, the distribution of it was shown in Figure 8.
This phenomenon is mainly caused that as the discharge increased,
It could be seen that the spawning habitat area increased when the
so done the water depth and velocity, that is, the area of the suitable
discharge decreased from 434 m3/s to 74 m3/s, and the distribution
water depth and velocity for Gymnocypris eckloni to spawn also
location shifted from two banks to the center of river. In Figure 6 (a),
increased. but after reaching a discharge, as the discharge continued to
under the average annual discharge in May of natural river of 434 m3/s,
increase and the velocity was too fast and the water was too deep, was
the spawning habitats were mainly distributed on both sides of river and
greater than that of Gymnocypris eckloni spawning suitable water depth
the spawning sites were more concentrated at the bend of river; In
and velocity. This moment, the effective habitat area tends to decrease.
Therefore, there was a peak in the weighted available area at a discharge
of 74 m3/s. Compared with River2D model, the effective spawning
habitat area of Gymnocypris eckloni in the study reach obtained by GAST
model was slightly larger, which was due to more accurate velocities and
water depths obtained by GAST model under high resolution terrain
conditions.
Table 2
Changes of WUA under different discharges based on GAST model and River2D model
Discharge (m3/s) WUA (m2) Discharge (m3/s) WUA (m2)
GAST model River2D model GAST model River2D model
6
L. Yang et al. Ecological Modelling 462 (2021) 109792
Figure 7. Distribution of water depth and velocity under different discharges (a) Average annual discharge in May of natural river of 434 m3/s; (b) The discharge in
May of normal year of 392.8 m3/s; (c) The discharge in May of dry year of 352.7 m3/s; (d) Proposed minimum discharge of 74 m3/s
Figure 6 (b) and (c), under the discharge in May of normal year of 392.8 WUA was 132,022.88 m2 under the average annual discharge in May of
m3/s and the discharge in May of normal year of 352.7 m3/s, the natural river of 434 m3/s; After the operation of hydropower station, the
spawning habitats distribution were consistent with Figure 6 (a), there WUA was 136,627.75 m2, 143,027.48 m2 and 202,492.08 m2 under the
was not much difference between them. In Figure 6 (d), under the discharge in May of normal year of 392.8 m3/s, under the discharge in
proposed minimum discharge of 74 m3/s, the spawning habitats shifted May of dry year of 352.7 m3/s and the proposed minimum discharge of
to the center of river, mainly distributed in the center of river, which 74 m3/s, respectively. Compared with in May of natural river, the
caused this change was that study river reach belonged to a wide and effective habitat area in May of normal year and in May of dry year, with
shallow one, most of river sections had broad and flat undersides. With an increase of 3.488 % and 8.335 %, respectively; while e proposed
the decreasing of river discharge, the water depth, velocity and cross- minimum discharge of 74 m3/s, with an increase of 53.377 %.
section width decreased. As a result, the effective habitat area in the To sum up, if the discharge of 392.8 m3/s or 352.7 m3/s is taken as
original suitable area for spawning decreased, and the central area of the minimum ecological discharge, the increase of effective habitat area
river changed from the original unsuitable area to the suitable area. was not significant; but the discharge of 74 m3/s is selected as the
Meanwhile, the Weighted Usable Area (WUA) of spawning habitat of minimum ecological discharge, the effective habitat area increased
Gymnocypris eckloni were calculated under different discharges. The significantly. Compared with the discharge in May of natural river of
7
L. Yang et al. Ecological Modelling 462 (2021) 109792
Figure 8. Distribution of WUA under different discharge. (a) Average annual discharge in May of natural river of 434 m3/s; (b) The discharge in May of normal year
of 392.8 m3/s; (c) The discharge in May of dry year of 352.7 m3/s; (d) Proposed minimum discharge of 74 m3/s
434 m3/s, the effective habitat area increased by 70,469.20 m2, with an was applied to simulate the spawning habitat of Gymnocypris eckloni in
increase of 53.377%. Thus, the effective habitat area suitable for the lower reaches of a hydropower station in the Upper Yellow River, the
spawning is in a good condition under the discharge of 74 m3/s. main conclusions are as follows:
6. Conclusion I River2D model and GAST model were used to simulate the
weighted available area of Gymnocypris eckloni spawning habitat
GAST model, which was obtained by coupling a two-dimensional under different discharges in the study area. In the case of water
high precision hydrodynamic model with a habitat suitability model, depth, velocity and the substrate, it was shown that GAST model
8
L. Yang et al. Ecological Modelling 462 (2021) 109792
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Declaration of Competing Interest Li, J., Xia, Z.Q., 2011. Study on instream ecological flow of the middle Yangtze River
based on physical habitat simulation. Journal of hydraulic engineering 42 (06),
678–684. https://doi.org/10.1080/01688638808402819 (in Chinese).
No conflict of interest exits in the submission of this manuscript. The Liang, Q., Xia, X., Hou, J., 2016. Catchment-scale High-resolution Flash Flood Simulation
authors declare that they have no known competing financial interests Using the GPU-based Technology. Procedia Engineering 154, 975–981. https://doi.
org/10.1016/j.proeng.2016.07.585.
or personal relationships that could have appeared to influence the work Liang, Q., Borthwick, A.G.L., 2009. Adaptive quadtree simulation of shallow flows with
reported in this paper. wet-dry fronts over complex topography. Computers and Fluids 38, 221–234.
https://doi.org/10.1016/j.compfluid.2008.02.008.
Mao, J., Dai, H., 2016. Effects of large water conservancy and hydropower projects on
Acknowledgements major aquatic species and regulation. Journal of Hohai University 44, 240–245.
https://doi.org/10.3876/j.issn.1000-1980.2016.03.009 (in Chinese).
Ma, B., Dong, F., Peng, W.Q., et al., 2020. Evaluation of impact of spur dike designs on
This work is partly supported by the Numerical Simulation of Flood
enhancement of aquatic habitats in urban streams using 2D habitat numerical
Process in Urban Areas with Fine Terrain and Lack of Pipe Network Data simulations[J]. Global Ecology and Conservation, 2020 24, e01288. https://doi.org/
(No. 52079106); High Resolution Numerical Simulation of Sediment 10.1016/j.gecco.2020.e01288.
Carrying Capacity Mechanism and Erosion Process of Over surface Flow Mark, Gard, 2010. Response to Williams (2010) on Gard (2009): Comparison of
spawning habitat predictions of PHABSIM and River2D models[J]. International
on Whole Sand Slope (No. 52009104); Chinesisch - Deutsches Mobilit journal of river basin management: JRBM 8 (1), 121–125. https://doi.org/10.1080/
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Methods for Urban Floods (No. M-0427). Marche, F., Bonneton, P., Fabrie, P., et al., 2007. Evaluation of well-balanced bore-
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Further reading
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using different habitat suitability evaluation methods. Ecological Engineering 71, https://doi.org/10.1006/jcph.1999.6329.
335–345. https://doi.org/10.1016/j.ecoleng.2014.07.034.
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