Isolation and Culture of Primary Glioblastoma Cells Form Human Tumor Specimens
Isolation and Culture of Primary Glioblastoma Cells Form Human Tumor Specimens
Isolation and Culture of Primary Glioblastoma Cells Form Human Tumor Specimens
Abstract
Cultured tumor cells are a central tool in cancer research and have provided fundamental insights in tumor
biology. Recent evidence, however, indicates that classically established cell lines from different tumors,
including glioblastoma, do not fully reflect the genotypes and phenotypes of the respective primary tumors.
By contrast, primary cells, isolated from human tumor samples and maintained in serum-free spheroid
cultures at low passage under defined growth factor conditions, reproduce key aspects of tumor cell physi-
ology much more faithfully. Among the tumor cell characteristics that are better represented in primary
glioblastoma cell cultures is the self-renewal and differentiation potential of the tumor cells. Indeed, a large
body of evidence from the past decade indicates that glioblastomas and other tumors are composed of a
hierarchy of heterogeneous types of cells, which are generated and maintained by cells that share charac-
teristics of stem cells. This cancer stem cell/tumor initiating cell population is optimally preserved and
maintained in primary glioblastoma cultures. Here, we describe a method for the isolation and culture of
primary tumor cells from human glioblastomas in serum-free conditions, which allows the routine genera-
tion and proper maintenance of tumor cells as spheroid cultures. Such primary tumor cultures can serve as
a model of choice for the study of the mechanisms behind key aspects of glioblastoma biology, including
tumorigenicity, stem cell hierarchy, invasion, and therapeutic resistance.
Key words Glioblastoma, Brain tumor, Primary glioblastoma cells, Brain tumor initiating cells, Brain
tumor stem cells, Glioblastoma stem cells, Cancer stem cells, Tumor spheres, Primary culture
1 Introduction
Ivan N. Rich (ed.), Stem Cell Protocols, Methods in Molecular Biology, vol. 1235,
DOI 10.1007/978-1-4939-1785-3_19, © Springer Science+Business Media New York 2015
263
264 Sascha Seidel et al.
2 Materials
2.1 Tumor Dissection 1. Phosphate buffered saline (PBS) without calcium and
magnesium, sterile (PAA).
2.1.1 Preparation
of Buffers and Solutions 2. 10× Hanks Balanced Salt Solution (HBSS) without calcium
and magnesium, sterile (Gibco).
3. Eagle’s Balanced Salt Solution (EBSS) without calcium and
magnesium, sterile (Gibco).
4. D-Glucose solution (300 mg/mL), sterile filtered.
5. Sodium chloride solution (0.15 M), sterile filtered.
6. Bovine serum albumin (BSA), cell culture tested (Sigma).
7. Amphotericin B (250 μg/mL) (Sigma).
8. Gentamicin (50 mg/mL) (PAA).
9. HEPES buffer, 1 M, sterile (PAA).
10. Ultrapure water (18.2 MΩ).
11. Papain (Worthington).
12. DNase I (Sigma).
13. Trypsin (Sigma).
14. Collagenase I (Worthington).
15. Hyaluronidase (Sigma).
16. Red Blood Cell Lysis Buffer (Roche Diagnostics).
17. 0.22 μm sterile syringe filters.
18. Sterile syringes.
19. 0.22 μm Stericup-GV filters, 150 and 500 mL (Millipore).
20. Autoclaved glass bottles 500 mL.
21. Sterile conical tubes.
2.1.2 Tissue Dissociation 1. Sterile 10 cm petri dishes (Greiner Bio-One; see Note 1).
2. Sterile scalpel with a #21 blade.
3. Autoclaved single edged razor blades.
4. Autoclaved forceps.
5. Sterile cell strainers, 70 and 100 μm.
6. Sterile 15 and 50 mL conical tubes.
7. Sterile plastic pipettes.
8. Water bath at 37 °C.
266 Sascha Seidel et al.
3 Methods
3.1 Tissue In the following section, we describe a method for the isolation
Preparation and the establishment of primary glioblastoma cell lines from
human tumor specimens. All steps of tissue dissociation should be
carried out under sterile conditions in a laminar flow cell culture
hood to reduce the risk of contamination of the primary culture.
Dissociation solution:
1. Add 400 mL ultrapure water to an autoclaved Erlenmeyer
flask.
2. Add 50 mL 10× HBSS without calcium and magnesium.
3. Add 9 mL D-glucose solution (300 mg/mL).
4. Add 7.5 mL 1 M HEPES buffer.
5. Mix carefully and adjust the pH to 7.4.
6. Add ultrapure water to a final volume of 500 mL.
7. Filter-sterilize with a 500 mL 0.22 μm Stericup filter into an
autoclaved glass bottle.
8. Prepare 5 mL aliquots in sterile 15 mL conical tubes and 50 mL
aliquots in sterile 50 mL tubes and store them at −20 °C.
Attention: 100 mL of dissociation solution is required for the
Dissociation Medium 2. If the dissociation solution is prepared
freshly do not freeze the whole amount.
Dissociation Medium 1:
Prepare freshly for every tumor dissection!
1. Thaw one 5 mL aliquot of Dissociation solution.
2. Transfer 4.75 mL of Dissociation solution to a new sterile
conical 15 mL tube.
3. Add 200 μL of the papain stock solution.
4. Activate the above mixture at 37 °C for 30 min prior to use.
5. Thaw one 50 μL aliquot of the DNase I stock solution on ice.
6. Add the DNase I aliquot and mix carefully.
Dissociation Medium 2:
1. Pour 100 mL of pre-cooled Dissociation solution into an auto-
claved Erlenmeyer flask on ice.
2. Add 70 mg of collagenase I to a final concentration of 0.7 mg/mL.
3. Add 70 mg of hyaluronidase to a final concentration of
0.7 mg/mL.
4. Add 100 mg of trypsin to a final concentration of 1 mg/mL.
5. Mix carefully until all the enzymes are completely dissolved.
6. Filter-sterilize with a 150 mL 0.22 μm Stericup filter into an
autoclaved glass bottle.
7. Prepare 5 mL aliquots in sterile 15 mL conical tubes and store
them at −20 °C.
Prior to Tumor dissociation:
1. Thaw one 5 mL aliquot of the above mixture.
2. Thaw one 50 μL aliquot of the DNase I stock solution on ice.
268 Sascha Seidel et al.
3.1.2 Tissue Dissociation 1. Transfer the tumor specimen into a sterile petri dish using
autoclaved forceps (see Notes 5 and 6).
2. Wash the tumor specimen two times with wash buffer and
discard the buffer by sucking it off.
3. Cut the tissue into small fragments using a sterile scalpel with
a #21 blade (see Note 7).
4. Chop/cut the tumor fragments with a sterile single edged
razor blade until it is well minced (see Note 7).
5. Transfer the tumor tissue to a sterile 15 mL conical tube by
flushing the dish with the 5 mL activated Dissociation Medium
1 and pipetting it with a sterile pipette (see Note 8).
6. Incubate the tube in a 37 °C water bath for 30 min. During
the incubation, take the tube out of the water bath every 5 min
and mix gently with a 5 mL pipette (around 20 times). Avoid
bubbling (see Note 8).
7. Centrifuge the tube for 5 min at 300 × g.
8. Suck off the supernatant carefully (the pellet is not solid!)
(see Note 9).
9. Resuspend the pellet in 5 mL Dissociation Medium 2.
(see Note 8).
Primary Glioblastoma Cell Culture 269
3.2 Cultivation This section describes how to establish and maintain the primary
of Primary tumor cells, obtained and plated during the previous procedure.
Glioblastoma Cells
1. Count the cells from step 22 in the previous section
(Subheading 3.1.2).
2. Plate them at a density of 2 × 106 cells in 10 mL of Tumor
Sphere Culture Medium in a 10 cm petri dish.
3. Add 10 μL (1:1,000) of the EGF and bFGF stock solutions to
a final concentration of 20 ng/mL.
4. After 24 h, collect the cells with a plastic pipette, transfer them
to a 15 mL conical tube, and centrifuge at 190 × g for 3 min
(see Note 12 and Fig. 1a).
5. Resuspend the pellet in 10 mL Tumor Sphere Culture Medium
and transfer them to the same petri dish from which they were
collected.
6. Add 10 μL (1:1,000) of the EGF and bFGF stock solutions to
a final concentration of 20 ng/mL.
7. The culture medium should be refreshed twice a week by
transferring the cells with a plastic pipette to a 15 mL conical
tube and centrifuging at 190 × g for 3 min.
270 Sascha Seidel et al.
Fig. 1 Primary glioblastoma cells in culture. (a) Isolated glioblastoma cells 12 h after tumor dissection. The
culture consists of tumor cells, which partly already start to form tumor spheres (arrows), some cell debris
(asterisks), and non-tumor cells that adhere to the petri dish (arrowheads). (b) Tumor Spheres of primary glio-
blastoma cells 5 days after splitting. Scale bars 100 μm
When refreshing the medium for the first time aspirate half of
the old medium and replace it with an equal volume of fresh
medium (i.e., refresh half of the medium). Afterwards re-plate the
cells in the original dish.
When refreshing the medium for the second time, aspirate all
the medium and replace it with fresh medium. Thereafter, re-plate
the cells in a new dish. Always add 10 μL (1:1,000) of the EGF and
bFGF stock solutions to a final concentration of 20 ng/mL after
changing the medium.
The obtained culture of primary glioblastoma cells should form
three-dimensional spheroids suspended in the medium (tumor
spheres) around 24–48 h after the dissociation (Fig. 1). The frequency
of sphere formation depends on the characteristics of the primary cell
line, e.g., the number of brain tumor initiating cells in the original
tumor specimen and their self-renewal capacity (see Notes 13–15).
3.2.1 Splitting of Tumor Depending on their size, tumor spheres of primary glioblastoma
Spheres cells should be split every 7–10 days.
1. Centrifuge the tumor spheres for 3 min at 190 × g.
2. Aspirate the medium and resuspend the pellet in 1 mL of
Accutase solution.
3. Incubate the spheres for 15 min at 37 °C.
4. In the meantime prepare a sterile 50 mL conical tube with a
40 μm cell strainer.
5. Mix the cell suspension with a 1,000 μL pipette tip until there
are no visible spheres left.
6. Add 9 mL of Tumor Sphere Culture Medium and filter
through the cell strainer.
Primary Glioblastoma Cell Culture 271
3.2.2 Cryopreservation The primary glioblastoma cells should be used at low passage num-
of Primary ber, as there is a risk of genetic alterations and phenotypic shifts
Glioblastoma Cells over the course of prolonged culture with multiple passaging.
Therefore, a substantial number of aliquots should be cryopre-
served at the earliest passage when they can be sufficiently expanded.
Subsequently, fresh frozen aliquots should be periodically thawed
and cultured for a limited number of passages and new fresh ali-
quots at low passages should be frozen.
1. Split and seed the cells as described in Subheading 3.2.1.
2. Spin down the spheres 24 h after the re-seeding for 3 min at
190 × g.
3. Resuspend the pellet of one petri dish in 2 mL of Cryo-SFM
cryopreservation medium.
4. Transfer the cells suspension to cryo vials at 1 mL per vial.
5. Transfer the vials to a freezing container at room
temperature.
6. Freeze the cells slowly in the freezing container for 24 h
at −80 °C.
7. Transfer the cells to liquid nitrogen for long-term storage.
4 Notes
1. Petri dishes used must not have a specially treated surface for
cell culture. As the primary glioblastoma cells are maintained
as spheroids in suspension, the surface of the dish should pre-
vent, rather than promote the attachment of the cells.
2. The B27 Supplement is light sensitive. Bottles containing
medium with B27 should be wrapped in aluminum foil to pre-
vent exposure to light.
3. The addition of antibiotics and antimycotics to the buffers and
cell culture media is optional, but can reduce the risk of con-
tamination, especially if it is not clear whether the tissue sam-
ples were collected under fully sterile conditions.
4. The stability of the B27 Supplement can be affected by long-
term storage at 4 °C. Therefore, if the throughput of Tumor
272 Sascha Seidel et al.
located at the very bottom of the conical tube and are overlaid
with debris. The latter appears as the upper layer of the pellet
and, especially during the first dissociation step, can be quite
viscous and sticky due to released DNA and extracellular matrix
proteins. Hence, there is the danger of aspirating the cell pellet
together with the supernatant and the debris. Therefore, the
supernatant must be aspirated slowly and carefully.
10. Depending on the tumor sample it could be necessary to repeat
the Red Blood Cell Lysis step. If the cell pellet appears to be
still reddish after the washing step, repeat the incubation with
Red Blood Cell Lysis Buffer for 5 min.
11. Depending on the amount and density of the tumor, the cell
suspension may be quite thick. In such cases, pipette directly
onto the cell strainer with increased pressure or press the sus-
pension through the cell strainer with the pipette tip.
12. At this stage the culture could still contain a small amount of
debris and non-tumor cells, which usually adhere to the sur-
face of the petri dish, whereas the tumor cells float in suspen-
sion, some of them already forming small spheres (Fig. 1a).
The non-tumor cells will not proliferate under the culture con-
ditions used for the primary tumor cells and are going to die
out. The debris will usually be washed out during the medium
change the day after tumor dissection.
13. The primary glioblastoma cells isolated using the described
protocol show self-renewal capacity and stem cell characteris-
tics. This is reflected, for example, by their ability to form
spheres in culture (Fig. 1), which express neural stem cell
markers such as nestin (Fig. 2a). In addition, they express
established brain tumor initiating cell markers such as CD133,
Oct4, and others (Fig. 2b; [14]). The expression of such stem
cell markers is enhanced under tumor sphere conditions,
whereas addition of serum downregulates the stem cell genes
and upregulates differentiation markers such as the astrocytic
protein GFAP (Fig. 2b).
14. In addition to the isolation of primary glioblastoma cells from
human tumor specimens, our method could be used to re-
isolate glioblastoma cells from orthotopic or subcutaneous
tumor xenografts. In this case, the cultures will initially be a
mix of murine and human cells, but usually after two passages
the culture becomes homogeneous and only consists of human
tumor cells, which outgrow the mouse cells.
15. The described protocol has been tested on numerous brain
tumor samples and in the majority of cases has led to the suc-
cessful isolation of primary glioblastoma cells. However, not all
cultures will start growing, or the cells could stop proliferating
after one or two passages. This usually depends on the quality
274 Sascha Seidel et al.
b
40.0
TSM
30.0
FCS
mRNA expression
20.0
2.0
1.5
1.0
0.5
0.0
CD133 Oct4 GFAP
Fig. 2 Primary glioblastoma cells express cancer stem cell markers and retain their differentiation capacity.
(a) Tumor spheres of primary glioblastoma cells were spun on a microscope slide using a Cytospin centrifuge
and stained for the neural stem cell marker nestin (green) and DAPI to visualize the nucleus (blue). Scale bar
20 μm. (b) Quantitative real time RT-PCR of primary glioblastoma cells grown under sphere conditions (in
tumor sphere culture medium, TSM) or as adherent cultures supplemented with 10 % fetal calf serum (FCS).
Under sphere conditions the cancer stem cell marker CD133 and the embryonic stem cell marker Oct4 are
highly expressed, whereas their expression decreases when cells undergo differentiation in the presence of
FCS. By contrast, expression of the glial lineage differentiation marker GFAP is highly upregulated by FCS
addition
Acknowledgements
This work was supported by grants from the DFG (AC 110/4
(KFO210); AC110/3-1, 3-2 (SPP1190); the ECCPS (EXC 147)),
the Deutsche Krebshilfe (107231), the von Behring-Röntgen
Primary Glioblastoma Cell Culture 275
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