Lecture Notes For Week 5
Lecture Notes For Week 5
Lecture outline
5 Xenobiotic Biotransformation - Phase I Reactions .............................................................. 1
Lecture outline...................................................................................................................................... 1
Introduction .......................................................................................................................................... 2
Lecture learning outcomes (LLOs)...................................................................................................... 2
5.1 Xenobiotic Biotransformation - Phase I Reactions ................................................................. 3
5.2 Types of Phase I Reactions ....................................................................................................... 3
5.2.1 Oxidation Reactions .................................................................................................... 3
5.2.2 Reduction Reactions .................................................................................................... 5
5.2.3 Hydrolysis Reactions .................................................................................................... 6
5.2.4 Dealkylation Reactions ................................................................................................ 7
5.2.5 Dehalogenation Reactions ......................................................................................... 9
5.2.6 Epoxidation Reactions............................................................................................... 10
5.2.7 N-Oxidation Reactions .............................................................................................. 11
5.2.8 S-Oxidation Reactions ............................................................................................... 13
5.3 Examples of Phase I Reactions in Drug Metabolism ........................................................... 14
5.4 Importance of Phase I Reactions ........................................................................................... 14
Introduction
In the intricate landscape of biochemical processes within living organisms, xenobiotic
biotransformation stands as a critical mechanism, orchestrating the transformation of
foreign substances, or xenobiotics, into metabolites that are more amenable to elimination.
This complex and highly regulated series of enzymatic reactions plays a pivotal role in
ensuring the body's defense against potentially harmful compounds, whether they be
environmental toxins, drugs, or other exogenous substances.
At the forefront of xenobiotic biotransformation are Phase I reactions, the initial metabolic
transformations that set the stage for subsequent processes. These reactions are
characterized by their ability to introduce or expose functional groups on xenobiotics,
rendering them more reactive and facilitating further modifications in Phase II reactions.
The primary objective of Phase I reactions is to increase the water solubility of xenobiotics,
as hydrophilic compounds are generally more easily excreted from the body. These
reactions typically involve the modification of chemical structures through oxidation,
reduction, hydrolysis, or other transformative processes. One of the key enzyme families
responsible for orchestrating these reactions is the cytochrome P450 superfamily, whose
members exhibit remarkable substrate specificity and contribute significantly to the
diversity of Phase I reactions.
In this exploration of Phase I reactions, we will delve into the diverse mechanisms employed
by the body to metabolize and neutralize foreign compounds. From oxidation to reduction,
each reaction type contributes uniquely to the dynamic process of xenobiotic
biotransformation, ultimately ensuring the maintenance of homeostasis and safeguarding
the organism from potential threats.
Substrate Binding: The xenobiotic substrate binds to the active site of the Cytochrome
P450 enzyme.
Oxygen Activation: Molecular oxygen (O2) is activated within the enzyme's active site,
resulting in the formation of a reactive oxygen species.
Hydroxylation: The activated oxygen species reacts with the substrate, introducing a
hydroxyl group through the transfer of an oxygen atom.
Product Formation: The hydroxylated product is released from the enzyme, now
possessing increased water solubility and often exhibiting altered pharmacological
properties.
Despite their essential role, oxidation reactions can also lead to the formation of reactive
intermediates, which, in excessive amounts, may contribute to toxicity. Understanding the
balance between beneficial and adverse effects is crucial in evaluating the overall impact
of oxidation reactions in xenobiotic biotransformation
Significance in Detoxification
Reduction reactions are crucial in detoxifying xenobiotics by converting reactive and
potentially harmful functional groups, such as nitro groups, into less reactive and more
readily excretable forms. This process enhances the water solubility of the substrate,
facilitating its elimination from the body.
While reduction reactions are generally associated with detoxification, it's essential to note
that the process can also yield reactive intermediates. Therefore, understanding the
balance between beneficial detoxification and potential toxic outcomes is vital for assessing
the overall impact of reduction reactions in xenobiotic biotransformation.
1. Esterases
• Esterases are enzymes that catalyze the hydrolysis of ester bonds.
• Found in various tissues, including the liver and gastrointestinal tract.
• Play a key role in the metabolism of ester-containing drugs and xenobiotics.
2. Amidases
• Amidases catalyze the hydrolysis of amide bonds.
• Present in different cellular compartments, including the cytoplasm and
mitochondria.
• Participate in the metabolism of amide-containing xenobiotics.
1. Ester Hydrolysis
• Esterases catalyze the cleavage of ester bonds.
• The ester substrate reacts with water, resulting in the formation of a carboxylic acid
and an alcohol.
• The enzyme facilitates the transfer of a proton to the departing alcohol group.
2. Amide Hydrolysis
• Amidases catalyze the cleavage of amide bonds.
• The amide substrate reacts with water, leading to the formation of a carboxylic acid
and an amine.
• The enzyme facilitates the transfer of a proton to the departing amine group.
Significance in Detoxification
Hydrolysis reactions, particularly those involving ester and amide bonds, are crucial for
detoxifying xenobiotics by breaking down these functional groups. The resulting products
are often more water-soluble and can be readily excreted from the body.
Oxidative dealkylation serves as a critical mechanism for the modification and metabolism
of xenobiotics, leading to alterations in their chemical structures. This process is particularly
relevant in the detoxification and elimination of drugs and environmental compounds
containing alkyl groups.
1. Substrate Binding
The xenobiotic substrate, containing an alkyl group, binds to the active site of a cytochrome
P450 enzyme.
2. Oxygen Activation
Molecular oxygen (O2) is activated within the enzyme's active site, leading to the formation
of a reactive oxygen species.
3. Dealkylation
The activated oxygen species reacts with the alkyl group, resulting in the cleavage of the
alkyl bond and the removal of the alkyl group from the substrate.
4. Product Formation
The dealkylated product, now modified and often more water-soluble, is released from the
enzyme.
Significance in Detoxification
Oxidative dealkylation plays a crucial role in the detoxification of xenobiotics by converting
alkylated compounds into more polar and water-soluble metabolites. This modification
enhances the excretion of the substrate from the body.
1. Dehalogenation of Halothane
• Catalyst: Cytochrome P450 Enzymes
• Outcome: Removal of halogen atoms from halothane, a volatile anesthetic.
• Significance: This dehalogenation reaction contributes to the metabolism and
elimination of halothane from the body.
1. Substrate Binding
The halogenated substrate binds to the active site of a cytochrome P450 enzyme.
2. Oxygen Activation
Molecular oxygen (O2) is activated within the enzyme's active site, leading to the formation
of a reactive oxygen species.
3. Dehalogenation
The activated oxygen species reacts with the carbon-halogen bond, resulting in the
cleavage of the bond and the removal of the halogen substituent.
4. Product Formation
The dehalogenated product, now modified and often more water-soluble, is released from
the enzyme.
Significance in Detoxification
1. Epoxidation of Benzo[a]pyrene
• Catalyst: Cytochrome P450 Enzymes
• Outcome: Formation of epoxides from benzo[a]pyrene, a polycyclic aromatic
hydrocarbon.
• Significance: This epoxidation reaction is crucial for the metabolism and
detoxification of environmental pollutants.
1. Substrate Binding
The xenobiotic substrate binds to the active site of a cytochrome P450 enzyme.
2. Oxygen Activation
Molecular oxygen (O2) is activated within the enzyme's active site, leading to the formation
of a reactive oxygen species.
3. Epoxidation
The activated oxygen species reacts with the substrate, introducing an oxygen atom
between two adjacent carbon atoms, resulting in the formation of a cyclic epoxide.
4. Product Formation
The epoxidated product, now modified and often more water-soluble, is released from the
enzyme.
Significance in Detoxification
Epoxidation reactions are crucial for the detoxification of xenobiotics, as the resulting
epoxides are often more polar and water-soluble than their parent compounds. This
modification facilitates the excretion of the substrate from the body.
1. Substrate Binding
The xenobiotic substrate, typically containing an aromatic amine group, binds to the active
site of a cytochrome P450 enzyme.
2. Oxygen Activation
Molecular oxygen (O2) is activated within the enzyme's active site, leading to the formation
of a reactive oxygen species.
3. N-Oxidation
The activated oxygen species reacts with the nitrogen atom in the substrate, introducing an
oxygen atom and resulting in the formation of an N-oxide.
4. Product Formation
The N-oxidized product, now modified and often more water-soluble, is released from the
enzyme.
Significance in Detoxification
N-Oxidation reactions contribute to the detoxification of xenobiotics by enhancing their
water solubility. The resulting N-oxides are often more polar and easily excreted from the
body.
1. Substrate Binding
The xenobiotic substrate, typically containing a sulfur atom in a thioether group, binds to
the active site of a cytochrome P450 enzyme.
2. Oxygen Activation
Molecular oxygen (O2) is activated within the enzyme's active site, leading to the formation
of a reactive oxygen species.
3. S-Oxidation
The activated oxygen species reacts with the sulfur atom in the substrate, introducing an
oxygen atom and resulting in the formation of an S-oxide.
4. Product Formation
The S-oxidized product, now modified and often more water-soluble, is released from the
enzyme.
Significance in Detoxification
S-Oxidation reactions contribute to the detoxification of xenobiotics by enhancing their
water solubility. The resulting S-oxides are often more polar and easily excreted from the
body.
1. Paracetamol (Acetaminophen)
Phase I Reaction: Hydroxylation by CYP450 enzymes.
2. Caffeine
Phase I Reaction: N-Demethylation by CYP450 enzymes.
4. Codeine
Phase I Reaction: O-Demethylation by CYP450 enzymes.
1. Activation of Prodrugs
Some drugs are administered in an inactive form and undergo phase I reactions to become
pharmacologically active.
2. Toxicity Reduction
Phase I reactions can generate less toxic metabolites, aiding in the detoxification process.
4. Substrate Specificity
Different enzymes within the cytochrome P450 family exhibit specificity for certain
substrates, contributing to the diversity of phase I reactions.