Macrocyclic Schiff Base Metal Complexes Derived From Isatin: Structural Activity Relationship and DFT Calculations
Macrocyclic Schiff Base Metal Complexes Derived From Isatin: Structural Activity Relationship and DFT Calculations
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Macrocyclic metal complexes viz., Co(II), Ni(II), Cu(II) and Zn(II) Stichwörter: Makrozyklischer Komplex, Isatin, 4-Aminoantipy-
have been prepared using a macrocyclic Schiff base as ligand, rin, o-Phenylendiamin, antimikrobielle Aktivität, Dichtefunktio-
which was derived from Isatin, 4-aminoantipyrine and o-phenyl- naltheorie (DFT)
enediamine. Further, the complexes have been characterized by
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dral geometry of the complexes has been revealed by the spec- Metal complexes of 4-aminoantipyrine Schiff base find ap-
tral data of UV-Vis and ESR as well as by the results of the mag- plications in various research areas including pharmacolo-
netic susceptibility measurements. Antimicrobial screening tests gical, clinical, corrosion science, analytical and biological
indicated that the Zn(II) metal complexes showed an excellent fields [1 – 6]. Studies of new kinds of chemotherapeutic
antimicrobial activity compared to the other studied metal com- Schiff bases and their functions receive the attention of bio-
plexes. The nuclease activity of the metal complexes showed chemists [7, 8]. Earlier reports revealed that some Schiff
that the Co(II) complex has effectively cleaved DNA. The opti- bases and their metal complexes showed a better activity
mized molecular structure, bond length, bond angle, dihedral when they existed as complexes rather than as ligands [9,
angle, chemical reactivity and total energy have been evaluated 10]. Macrocyclic compounds and their derivatives are inter-
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using the density functional theory (DFT) with B3LYP functional esting ligand systems which attracted the researchers in the
level. recent years to synthesize novel metal complexes that are
biologically important [11 – 13]. From the earlier reports it is
Key words: Macrocyclic complex, isatin, 4-aminoantipyrine, o- well known that, there must be an amine and a carbonyl
phenylenediamine, antimicrobial activity, density functional group containing system for synthesis of macrocyclic com-
theory (DFT) pounds. Among the several amines employed for the syn-
thesis of macrocyclic compounds, o-phenylenediamine is
one of the most intensively used compound and isatin is of-
Von Isatin abgeleitete, makrozyklische Schiff’sche Base- ten used as a reactant for preparation of the macrocyclic
Metallkomplexe: Struktur-Aktivitätsbeziehung und DFT- compounds, which is evidenced from the literature.
Berechnungen. Makrocyclische Metallkomplexe mit Co(II)-, In the present study, the novel tetradentate Schiff base
Ni(II)-, Cu(II)- bzw. Zn(II)-Zentralatom, wurden unter Verwen- has been synthesized using Isatin, 4-aminoantipyrine and
dung einer makrocyclischen Schiff’schen Base als Ligand herge- o-phenylenediamine ligand. The complexes have been
stellt, der aus Isatin, 4-Aminoantipyrin und o-Phenylendiamin formed by binding the metals through nitrogen atom of
erzeugt wurde. Ferner wurden die Komplexe durch Elementar- two azomethine grous of the same ligand. Further, the com-
analyse, magnetische Suszeptibilität, molare Leitfähigkeit, Mas- plexes have been characterized using standard analytical and
senspektrometrie, FT-IR-, Fern-IR-, UV-Vis-, EDX-Spektroskopie, spectral methods.
1H-NMR und 13C-NMR, ESR-Spektrometrie und Rasterelektro-
solvent. The SEM and EDX analysis for ligands and com- according to the reported procedure [17]: 250 mg agarose
plexes were also recorded. was completely dissolved in 25 ml of TAE buffer (4.84 g Tris
The antimicrobial activity of the ligand and the metal base, pH 8.0, 0.5 M EDTA/1 ltr). At 55 8C, a comb fitted gel
complexes was studied. Bacteria like E. coli, S. aureus and cassette was filled with the gel. After cooling when the gel
fungi like A. niger and A. flavas were examined in order to becomes a solid, it was placed in the chamber with the
find out whether they are susceptible to ligand and its metal DNA sample in 20 ll TAE buffer. Then it was loaded care-
complexes. The CT DNA cleavage ability of the newly fully into the well along with a standard DNA marker. Then
synthesized compound was examined by gel electrophoresis the electrical current has been passed for 45 min at 50 V. An
[14, 15]. UV transmitter was used to observe the bands of the re-
moved gel for 10 – 15 min which was stained with ETBR so-
2.2 Synthesis of Schiff base lution (10 lg/ml).
with 40 ml ethanolic o-phenylenediamine solution (0.4 g, havior of the studied complexes (below 2 S cm2 mol–1). The
0.10 mmol) for 30 h. The light yellow coloured precipitated results are given in Table 1
solid was filtered off and dried over CaCl2.
3.1 IR spectra
2.3 Synthesis of Complexes
IR spectra of the ligand and the corresponding complex
A solution of metal(II) chloride in methanol (0.20 mmol) have been compared (Table 2). In the IR spectrum of ligand,
was refluxed in methanolic solution of the Schiff base no bands appeared at 1 700 cm–1 which showed the absence
(0.20 mmol) for 6 h. The volume of the solution was then of m(CO) whereas a band at 1 647 cm–1 is due to the presence
reduced to one third of its own volume by keeping it on a of m(C=N) [18, 19]. The observation confirmed the condensa-
hot plate. Then, the precipitated solid complex was washed tion of C=O group of isatin and NH2 group of o-Phenylene-
thoroughly with methanol and then dried in vacuum diamine. It is worth noting that, the frequencies of m(C=N)
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(Fig. 9). have been shifted to lower frequencies (40 – 80 cm–1). The
observation revealed the involvement of the nitrogen atom
2.4 Antimicrobial activity of C=N in coordination with the metal ion [21]. The results
confirmed the formation of macrocyclic frame. The band ap-
The antimicrobial activity of the studied compounds against peared at 3 247 – 3 364 cm–1 could be due to the presence of
the bacteria (E. coli, S. aureus) and fungi (A. niger and A. fla- m(N-H) [20 – 23].
vas) was determined by the well diffusion method [16] using The results of Far IR spectrum of each complex revealed
an agar nutrient as medium. In order to prepare a stock so- that the bands in the range 440 – 460 cm–1 are due to m(M-
lution, the synthesized complexes (100 mg) were dissolved N) [24, 25]. The bands appeared at 340 – 314 cm–1 in all com-
in DMSO. The well was prepared by using agar medium fol- plexes are assigned to m(M-Cl) [26]. The formation of M-N
lowing a typical procedure. The well was filled with the test and M-Cl bonds is supported by these bands.
solution and the plate was incubated at 35 8C. The incuba-
tion period for bacteria and fungi were 24 and 72 h, respec- 1
3.2 H NMR Spectra
tively. During this period, the test solution diffused and af-
fected the growth of the inoculated microorganisms. The 1H-NMR spectrum of the ligand recorded in MeOD is
shown in Fig. 1a. From the figure, signals at d/ppm: 2.9 (s,
2.5 DNA cleavage activities 6H, =C-CH3)2, due to six protons of two methyl groups at-
tached to double bond carbon atom, 3.34 (s, 7H, N-CH3)2
Gel electrophoresis was used to examine the ability of DNA correspond to seven protons of two methyl groups attached
cleavage of the studied complexes. The samples were treated to N-substitute methyl group. 7.34 – 7.84 (m, 18H, aromatic
proton) due to the protons of four phenyl rings and 8.45 (s, 128.97 due to the aromatic carbon, 48.14 for (N-CH3) and
1H, NH of istain) were arrived [26 – 29]. 35.99 corresponding to (C-CH3) of ring [30].
The 13C-NMR (Fig. 1b) spectral analysis showed signals at d/ In the spectrum (Fig. 2) of the zinc complex, it is observed
ppm: 161 (C=O) attributed to carbon atom of carbonyl that azomethine proton signal is shifted to low field. The
groups, 139.56 (C=N) for carbon atoms azomethine groups, peak at d 7.5 found in the ligand is shifted to d 7.8 in com-
Table 2 Infrared spectral data m/cm–1, of the divalent of Co(II), Ni(II), Cu(II) and Zn(II) complexes derived from isatin, 4-aminoantipyrine and o-phenylene-
diamine
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(a)
(a)
(b) (b)
Figure 1 Spectra of the ligand, (a): 1H NMR, (b): 13C NMR Figure 2 Spectra of the Zn(II) complex, (a): 1H NMR, (b): 13C NMR
plex and the rest of the peaks (s, 6H, =C-CH3)2, & (s, 7H, N- type [34]. The results of the ligand (a) & Cu(II) complex (b)
CH3)2 appear in the same region 2.82, 3.33, respectively. The study are shown in Fig. 3.
peaks at d 8.24 and d 8.43 are due to benzylidenium hydro-
gen. 3.7 SEM- EDX analysis
3.5 Magnetic Measurement and Electronic Spectra Figures 4 and 5 show the SEM-EDX analysis of the studied
complexes. The surface morphology of ligand and Cu(II)
Magnetic susceptibility of the complex was measured by complex has been examined using scanning electron micro-
Guoy balance using copper sulphate as calibrant. UV-Vis scope at a magnification of 2000 X. The distinct morphology
spectra of complexes were recorded using 10–3 M methano- of ligand and Cu(II) complex has been observed. The size of
lic solution of complexes. the flakes is greater for Cu(II) complex than the free ligand.
Cobalt complex:
The magnetic moments of Co(II) complex was found in the
range 4.60 – 5.21 lb, which is consistent with three unpaired
electrons. The solution spectra of Co(II) complexes exhibit
three bands at 11 300 cm–1, 15350 cm–1 and 24 100 cm–1
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Nickel complexes:
The magnetic moments of Ni(II) complex was found in the
range 2.92 – 2.98 lb, which is consistent with two unpaired
electrons. The solution spectra of Ni(II) complex exhibited
three bands in the region 11 850 cm–1 (m1), 16 750 cm–1 (m2)
and 23 850 cm–1 (m3) and are assigned to 3B1g ? 3B2g,
3
A2g ? 3A2g[F], and 3A2g ? 3T1g[P], transition respectively.
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Copper complex:
The magnetic moments Cu(II) complex was found in the
range 1.70 – 1.82 lb, which is consistent with one unpaired
electron. The transition 2B1g ? 2B2g assigned the solution
spectra of Cu(II) as 18 550 cm–1 and broad band at 14 250,
16 750 cm–1 which are assigned to 2B1g ? 2B2g and
2
B1g ? 2A2g transition, respectively. This shows that the
complex structure is distorted octahedral [33]. The results
of the study are shown in Table 3.
Table 3 Electronic spectral data and magnetic moments of the prepared compounds
Figure 5 EDX spectrum of the Cu(II) complex Figure 6 ESR spectrum of the Cu(II) complex
the super coil. On the other hand, there is only partial cleav- gi. From the results of the antimicrobial studies it is clear,
age of super coil by [Ni(L)Cl2], [Cu (L) Cl2] and [Zn(L)Cl2] that the metal complexes are found as highly effective
complexes. From the studies, it is evident that only the con- against bacteria compared to that of the free ligand. Overlap
trol DNA does not show any apparent cleavage but the li- of the ligand orbital reduces the polarity of the metal ion and
gand and its metal complexes show the apparent cleavage. partial sharing of the positive charge of the metal ion with
From the finding of this study, it could be concluded that donor groups (Chelation theory) [38]. This causes enhance-
all the synthesized compounds are good inhibitors of patho- ment in delocalization of the p-electrons over the whole che-
genic micro organisms, which is evident from the observa- late ring and the penetration of the complexes into lipid
tion of the DNA cleavage. membranes and blocks are enhanced by the metal binding
sites in the enzymes of micro organisms. The synthesis of
proteins is blocked and further growth of organisms is re-
3.10 Antimicrobial studies stricted by the complexes and the respiration process of the
cell is also disturbed. The results of the study are shown in
In-vitro antimicrobial activity tests were carried out with Plate 1: Anti bacterial activity, Plate 2: Anti Fungal activity
metal chloride solutions, DMSO solvent, free ligand and (Fig. 8).
DMSO solution of metal complexes. The tests were studied
against E. coli, S. aureus, bacteria and A. niger, A. flavas fun-
3.11 Molecular geometry
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Figure 8 Antimicrobial studies: the two Petri dishes on the left: antibacterial activity; the two Petri dishes on the on the right: antifungal activity
Table 4 Optimized geometrical parameters of obtained by B3LYP/6-31 density functional calculations (Cu(C36H31N9)Cl2)
Table 4 (Continued)
bility is directly related to energy gap. The high stability in The v and g can be determined by the following expressions
turn indicates low chemical reactivity and small gap indi- from calculation of IP and EA.
cates high chemical reactivity.
Koopman’s theorem [41] specifies that the energy of the IP þ EA
v¼ ð3Þ
highest occupied molecular orbital (EHOMO) and the energy 2
of the lowest unoccupied molecular orbital (ELUMO) corre- 1
The S is defined as the inverse of the g (3). S ¼
spond to ionization energy and electron affinity, respectively. g
According to Koopman’s Theorem, electronegativity, global l2
hardness and softness may be defined via the following The electrophilicity index (x) formula is x ¼
2g
equations in terms of the energy of HOMO and LUMO. In
Calculated quantum chemical parameters of (Cu
this stage, it should be noted that softness (r) is defined as
(C36H31N9)Cl2), (Co(C36H31N9)Cl2), (Ni (C36H31N9) Cl2) and
physically inverse of hardness [41 – 45].
(Zn(C36H31N9)Cl2) metal complexes were listed in Table 6.
IP ¼ EHOMO ð1Þ According to the HOMO-LUMO energy gap values, the sta-
bility of metal complexes are in the following order Ni(II) >
EA ¼ ELUMO ð2Þ Zn(II) > Co(II) > Cu(II).
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Zn77-Cl79 2.231 – – – –
Co77-N10 1.964 N10- Co77-N14 91.6 N14- Co77-N10-C7 178.4
Co77-N11 1.821 N11- Co77-N14 178.9 C12-N10-Co77-N11 179.2
Co77-N23 1.961 N23- Co77-N11 92.6 C16-N23-Co77-N11 178.6
Co77-N14 1.831 N14- Co77-N23 88.7 N23-Co77-N14-C13 179.2
Co77-Cl78 2.124 Cl78- Co77-Cl79 179.5 N23-Co77-N14-C15 0.5
Co77-Cl79 2.023 – – – –
Table 5 Selectded optimized geometrical parameters of obtained by B3LYP/6-31 density functional calculations ([Ni(C36H31N9)Cl2], [Zn(C36H31N9)Cl2] and
[Co(C36H31N9)Cl2])
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Isatin Schiff base ligand –6.9964 –0.9967 –5.9997 6.40377 0.15616 –7.4948 28.0859 0.03561
[Cu(C36H31N9)Cl2] –6.04 –6.4544 0.41442 5.50173 0.18176 13.992 97.8882 0.01022
[Co(C36H31N9)Cl2] –8.0783 –8.2685 0.1902 3.70936 0.26959 8.96538 40.189 0.02488
[Ni(C36H31N9)Cl2] –6.3692 –1.1271 –5.2421 6.20673 0.16112 11.0187 60.7062 0.01647
[Zn(C36H31N9)Cl2] –6.7763 –2.1181 –4.6582 6.20673 0.16112 11.0187 60.7062 0.01647
4 Conclusion References
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