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HY PATHOLOGY
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HY Pathology, by Dr Michael D Mehlman

The focus of this PDF is a HY review of general pathology principles for USMLE. When we talk about “Path,”
every organ system has countless diseases and mechanisms that could be expounded upon. Recognize that my
other subject PDFs (i.e., HY Cardio, Pulm, Renal, Gastro, etc.) are all “Path,” where I go into extensive detail
about the things you need to know for USMLE. I reiterate / preface this way because if you’re currently looking
for in depth Path in a specific subject area, use my other subject PDFs. Going through all of my PDFs will cover
all of your “Path” for USMLE. This PDF is just general pathology principles once again.

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HY General Pathology

HY Path terms
- Reversion to more immature cell type (i.e., a cell goes from, e.g., mature skin cell back
Anaplasia to a stem cell).
- Means high-grade in cancer and poorer prognosis.
- Tissue/organ doesn’t develop.
Aplasia - DiGeorge syndrome à aplasia of 3rd and 4th pharyngeal pouches à missing thymus and
parathyroid glands à T-cell deficiency and hypocalcemia/hyperphosphatemia.
- Diminished cell growth/size due to under-stimulation.
- Shows up on NBME exam for effect on prostate tissue treated with orchiectomy in the
setting of prostatic adenocarcinoma; ¯ testosterone à ¯ DHT à ¯ prostate stimulation.
- Testicular atrophy in the setting of exogenous anabolic steroid use; ­ negative
feedback at hypothalamus/anterior pituitary à ¯ LH secretion à ¯ testicular
Atrophy
stimulation.
- Thyroid follicular atrophy with exogenous T3/T4 use; ­ negative feedback at
hypothalamus/anterior pituitary à ¯ TSH secretion à ¯ thyroid stimulation.
- Menopausal effects on ovaries and endometrium; don’t confuse with menses, which
are apoptotic.
- Cellular atypia that is precursor to cancer; cells are not yet cancerous/tumorigenic.
- Reversible process; students often erroneously think it is irreversible.
- USMLE is not going to ask, “Is dysplasia irreversible or reversible?” What they will do is
Dysplasia
give you, e.g., koilocytes with HPV 16/18 infection, and you need to know most cases of
low- and high-grade squamous epithelial dysplasia are reversible / spontaneously
regress.
- Increased cell number.
- Endometrial hyperplasia due to unopposed estrogen is highest yield example on
USMLE. Anovulatory cycles à no corpus luteum à no progesterone production à
unopposed estrogen à endometrial hyperplasia à increased risk of endometrial
Hyperplasia
dysplasia and adenocarcinoma. I discuss these mechanisms in high detail in my Obgyn /
Repro PDF.
- Benign prostatic hyperplasia (BPH) à older males will have large, hyperplastic
prostates due to lifetime of DHT exposure.
- Increased cell size.
- Highest yield example on USMLE is ventricular myocardial hypertrophy. High afterload
Hypertrophy causes concentric hypertrophy; high preload causes eccentric hypertrophy. I discuss
these mechanisms in the Cardio section and HY Arrows PDF.
- Skeletal muscle hypertrophy in response to resistance weight training.
- One mature cell type becomes another mature cell type; reversible.
- Barrett esophagus caused by reflux is highest yield example on USMLE: non-keratinized
Metaplasia stratified squamous epithelium of distal esophagus à intestinal columnar epithelium
(meaning has goblet cells that produce mucous). The stomach doesn’t have goblet cells;
it has mucous neck cells, aka foveolar cells.
- Irreversible conversion of a cell to a tumorigenic one that grows uncontrollably.
- This does not necessarily mean conversion of a cell to a cancerous one. The term
cancer means malignant potential (i.e., capable of metastasis). But benign tumors such
Neoplasia
as fibroadenoma and uterine fibroids are still neoplastic.
- Cervical intraepithelial neoplasia (CIN) is often reversible, as it is technically dysplasia,
despite the name.

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Apoptosis versus necrosis

- Cell death that is programmed and well-controlled; active process; uses ATP.
- Intrinsic pathway: Activated in response to cell damage/stress/infection: Bax and Bak are
intracellular proteins that create pores on the surface of mitochondria à causes leakage of
cytochrome c from mitochondria to cytosol à cytochrome c triggers assembly of protein
complex called apoptosome à activates caspases à caspases act as “molecular scissors,”
breaking down cellular structures à cell death.
- Extrinsic pathway: Activated in response to external signals: death receptors (FAS or TNF
receptor) are activated on the cell surface via external death ligands (FAS-L or TRAIL) à
induces formation of death-inducing signaling complex (DISC) à activates caspases.
Apoptosis
- USMLE wants you to know hepatocellular death in hepatitis is due to T-cell-mediated
apoptosis. Direct viral cytopathicity is wrong answer. This is also asked on the NBME where
they show a histo pic of hepatocytes during hepatitis infection + they ask what’s occurring
here à answer = “apoptosis caused by activation of death receptor extrinsic pathway”;
wrong answer is “apoptosis caused by activation of mitochondrial intrinsic pathway.”
- For whatever magical reason, you need to be aware that “DNA ladders” of 180bp can be
formed during apoptosis. Not my opinion. On random offline NBME.
- Apoptotic cells will fragment into smaller apoptotic bodies, which are phagocytosed.
- Menstruation is apoptosis, not atrophy. Menopause is atrophy.
- Cell death that is uncontrolled, usually from injury or ischemia; passive process; does not
use ATP. Necrosis types:
- Coagulative à cellular architecture is maintained; myocardial infarction and acute tubular
necrosis are examples.
- Liquefactive à cellular architecture not maintained + dissolved by hydrolytic enzymes;
refers to 1) abscesses and 2) anything CNS-related.
- Caseous à cheese-like necrosis; refers to 1) TB; 2) fungal infections; and 3) Bartonella
henselae (cat-scratch disease).
- Enzymatic-fat à Enzymatic fat necrosis = acute pancreatitis à pancreatic lipases dissolve
surrounding architecture + chelate Ca2+ à saponification (soap formation).
- Non-enzymatic fat à breast trauma.
- Fibrinoid à “-Oid” means “looks like but ain’t” à therefore looks like fibrin, even though
it’s not fibrin; seen in polyarteritis nodosa, which affects small- and medium-sized arteries.
Necrosis - Dry gangrenous à tissue death (usually limbs) due to interrupted blood supply; technically
a type of coagulative necrosis, but I’ve seen NBME list them as separate answer choices;
classic example is diabetes, where neuropathy leads to patient not being able to feel his or
her feet à foot injury à then vasculopathy leads to inability to heal the lesion à gangrene.
- Wet gangrenous à infective necrosis of limbs; can sometimes occur as sequela of dry
gangrene; Fournier gangrene is necrosis of perineum/scrotum in advanced diabetes (on 2CK
Surg form).
- Gas gangrenous à C. perfringens secretes a-toxin/phospholipase that produces CO2 gas
within tissues à crepitus/crunching of necrotic skin (subcutaneous emphysema). Can also
occur within the gall bladder (emphysematous cholecystitis).
- Cystic medial necrosis à necrosis of large arteries, where collagen-linking defects occur
with the precipitation of cyst-like lesions within arterial wall; results in aortic dissection and
aneurysm; seen in connective tissue disorders like Marfan and Ehlers-Danlos; also seen in
hypertension (on NBME) as simply “medial necrosis,” sans the cystic.

Neuro necrosis points

- Liquefactive necrosis is the answer for necrosis of nervous system tissue.
- “Red neurons” is the answer for what will be seen acutely with ischemic infarction of the CNS. This refers
to their strong eosinophilic (pink) staining with H&E. This is in contrast to myocardial infarction, where “no
histologic changes” is the answer immediately after.
- Microglia are the resident macrophages of the CNS. They phagocytose necrotic brain/spinal tissue.

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- Astrocytes are the glial cells (non-neuronal cells of CNS/PNS) that proliferate and become a glial scar
(gliosis). In other words, if they ask which cell is responsible for scar formation in CNS, answer = astrocyte.

Wallerian degeneration
- Wallerian degeneration is a term that refers to degradation of an axon/myelin sheath distal to the site of
injury. Regrowth occurs at maximum of 1mm/day. Both PNS and CNS neurons undergo Wallerian
degeneration, but regeneration occurs within the PNS, not CNS. This is because PNS Schwann cells can
regenerate myelin, whereas CNS oligodendrocytes do not effectively regenerate myelin post-injury.
- The optic nerve is considered an extension of the CNS and is myelinated by oligodendrocytes; the other
cranial nerves are part of the PNS and are myelinated by Schwann cells. This distinction is why degeneration
of the optic nerve results in permanent blindness, whereas other facial nerves (e.g., CN VII for Bell’s palsy)
have better regenerative potential. The caveat, however, is that the extent of CN recovery depends on the
nature of the injury and is not always complete, the same way nerve injuries in the limbs might not fully
recover either.

Cell injury points for USMLE

Reversible Irreversible
- Blunting of microvilli. - Cellular autolysis (self-digestion of the cell by
- Cellular / mitochondrial swelling. lysosomal enzymes).
- Cellular blebbing. - Disruption of plasma membrane / increased
- Decrease in intracellular ATP concentrations. membrane permeability / cell lysis.
- Disaggregation of ribosomes. - Dystrophic calcification (deposition of calcium salts
- Disruption of cytoskeletal elements. within necrotic tissues).
- Fatty change (steatosis in the liver). - Karyolysis (dissolution of the nucleus).
- Glycogen accumulation. - Karyorrhexis (fragmentation of the nucleus into
- Loosening of intercellular attachments. small, irregularly shaped fragments).
- Metastatic calcification (deposition of calcium in - Loss of organelle integrity.
tissues in the setting of hypercalcemia). - Pyknosis (nuclear condensation and shrinkage).

- It is in my view going through NBME exams that

cellular swelling is highest yield for this point,
particularly with regard to hypoxic injury of renal
PCT cells – i.e., cells swell as damage occurs prior to
overt tubular necrosis. This is because of reduced
Na+/K+ ATPase activity that leads to Na+ buildup
within the cell à retention of water à swelling.
NBME also asks for ¯ Na+/K+ ATPase activity as the
answer for “hydropic changes” in renal PCT cells.

- Cellular swelling can also occur with myocardium;

NBME will give a patient who’s died from MI and
cellular swelling is observed on biopsy; they ask why
à answer = ¯ Na+/K+ ATPase activity. In other
words, although both cellular swelling and ¯ Na+/K+
ATPase activity are reversible, just be aware NBME
likes to ask this same mechanism posthumously in
MI patients.

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HY Cancer Genes for USMLE

- Mutations cause Familial Adenomatous Polyposis (FAP); chromosome 5; AD.
- Hundreds to thousands of polyps on colonoscopy; 100% cancer risk.
- Answer on 2CK Peds form is total proctocolectomy in 18-year-old (presumably since 100%
APC
chance of cancer + too difficult to conservatively screen).
- FAP + soft tissue (e.g., lipoma) or bone tumors (e.g., of the skull) = Gardner syndrome.
- FAP + CNS tumors = Turcot syndrome.
- Overexpressed in follicular lymphoma (most common indolent non-Hodgkin lymphoma) as
a t(14;18) translocation.
- Codes for anti-apoptotic molecule.
- Follicular lymphoma will present as waxing/waning painless lateral neck mass over 1-2
BCL-2
years in an adult.
- USMLE might give research-type Q where BCL-2 is overexpressed (unrelated to follicular
lymphoma) and they ask what would be expected à answer = increased lifespan of
population of cells (makes sense, since anti-apoptotic molecule).
- HY for chronic myelogenous leukemia (CML).
- t(9;22) translocation of these two genes (aka Philadelphia chromosome) codes for a
“fusion protein.”
- This fusion protein = an oncogenic tyrosine kinase.
- CML is answer for leukemia when the Q gives you lots of myelo-sounding cells (i.e.,
myelocytes, promyelocytes, metamyelocytes). 4/5 Qs on USMLE that mention these cells
are CML. Leukocyte ALP will be low.

BCR-ABL

- The blood smear for CML I refer to as a “motley mix,” or a “soup.” This is a buzzy image on
NBME for CML.
- Imatinib is Tx for CML. It can cause fluid retention / peripheral edema.
- The MOA of imatinib = targets BCR-ABL tyrosine kinase.
- Proto-oncogene that can be seen in some melanomas.
BRAF
- Codes for serine-threonine kinase.
- Breast cancer tumor suppressor genes.
- NBME exam asks for what the gene does à answer = “recombinational ds-DNA repair.”
BRCA1/2 - Can also lead to gynecologic cancers in females or breast/testicular cancers in males.
- Answer on an NBME exam for appropriate prophylaxis in patient who has confirmed
mutation is “bilateral oophorectomy and mastectomy.”
c-KIT - Proto-oncogene; can be mutated in some gastrointestinal stromal tumors (GIST).
- Overexpressed in Burkitt lymphoma (a type of NHL) as a t(8;14) translocation.
- Codes for a transcription factor.
c-MYC - Burkitt lymphoma will be mass of the jaw or abdomen.
- Histo is buzzy for “starry sky” appearance, which is a basophilic (purple) background of B
cells with scattered translucent macrophages.

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- The macrophages are referred to as “tingible body” macrophages (correct, not tangible),
where apoptosis occurs. This is asked on an NBME exam, where they have an arrow that
points to one of the macrophages, and the answer is apoptosis.
- Non-small cell lung cancer (adenocarcinoma) and glioblastoma multiforme.
EGFR - Codes for EGFR tyrosine kinase.
- Erlotinib asked on USMLE à targets EGFR tyrosine kinase.
HER2/neu - Tyrosine kinase expressed in some breast cancers. If (+) à poor prognostic indicator.
(ERBB2) - Trastuzumab (Herceptin) is a drug that targets HER2/neu. It can cause cardiotoxicity.
- Can be activated in polycythemia vera, essential thrombocytosis, and myelofibrosis.
- USMLE wants increased proliferation of hematopoietic stem cells, not pluripotent stem
cells, for PV. Patient will have high RBCs, PLUS either high WBCs and/or platelets (i.e., 2-3 of
the cell lines will be high in Qs, but RBCs are always high). Generalized pruritis after showers
can be seen from basophilia. Hyperviscosity syndrome (i.e., blurry vision, headache,
Raynaud) from high RBCs is treated with phlebotomy. Hydroxyurea can decrease recurrence
JAK2 of episodes.
- Essential thrombocytosis will present in Qs as platelets over a million (NR 150-450,000).
They will say there’s pain or discoloration in tips of fingers or give hyperviscosity-type
findings. Bone marrow will show increased megakaryocytic proliferation (this latter finding
will not be seen in reactive thrombocytosis, which is high platelets from infection).
- Myelofibrosis will present with teardrop-shaped RBCs (dacrocytes) and/or “dry tap” on
bone marrow aspiration. Massive splenomegaly is seen in basically all questions.
- Proto-oncogene; codes for a GTPase.
- The answer on USMLE for the first gene mutated in colonic polyps, prior to progression to
overt colon cancer.
- Colon cancer often develops as a result of progressive mutations, rather than one mutation
KRAS straight-up. In other words, first KRAS, then PTEN, then DCC, then TP53.
- If they tell you a colon cancer has metastasized and force you to choose a gene that’s
mutated, go with TP53 (codes for p53 protein).
- If they tell you a polyp is seen and there is no evidence of invasion of the stalk, choose
KRAS. This is on NBME exam.
- Mutations cause Multiple Endocrine Neoplasia type I.
- 3Ps à Pituitary tumor (e.g., prolactinoma), Parathyroid adenoma (or diffuse 4-gland
MEN1 hyperplasia), and Pancreatic tumor (e.g., gastrinoma; Zollinger-Ellison syndrome).
- HY point is that NBME Qs need not give all findings within a MEN syndrome. For example,
the Q can give gastrinoma alone and ask for the gene à MEN1.
MSH2/6 - Hereditary non-polyposis colorectal cancer (HNPCC).
MLH1 - Mismatch repair genes; mutations cause “microsatellite instability.”
PMS2 - Colonic polyps/cancer; also associated with gynecologic cancer.
NF1 - Neurofibromatosis type I; chromosome 17; AD.

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- Café au lait spots (hyperpigmented macules), axillary/groin freckling, neurofibromas (nerve

sheath tumors presenting as nodules under the skin), weird CNS tumors (i.e.,
oligodendroglioma, ependymoma, meningioma), optic glioma (CN II tumor).
- Classic disease that demonstrates variable expressivity, which means varying disease
severity (I talk more about this stuff in my HY Genetics PDF).
- Neurofibromatosis type II; chromosome 22; AD.
NF2 - Presents with acoustic schwannoma. Can be bilateral.
- Meningioma.
- Congenital retinoblastoma (i.e., leukocoria in 1-year-old) and osteosarcoma.
- Tumor-suppressor gene; autosomal dominant (two hits required, but chance of second
mutation is 100%, so AD not AR).
- RB protein is normally in a complex with E2F, a transcription factor, repressing it and
RB
preventing cell cycle progression. CDK/Cyclin complexes then phosphorylate RB, releasing it
from E2F. E2F then goes to the nucleus and transcribes genes à cell cycle progression.
- NBME simply wants you to know that decreased RB phosphorylation is a wrong answer for
what we’d expect in cancer cells.
- Proto-oncogene à MEN 2A/2B.
- Both MEN 2 syndromes have pheochromocytoma and medullary thyroid carcinoma.
- MEN 2A has parathyroid adenoma or hyperplasia (same as MEN 1).
- MEN 2B has Marfanoid body habitus and/or mucosal neuromas.
RET
- Same as with MEN 1, a HY point is that NBME Qs need not give all findings within a MEN
syndrome. For instance, one NBME Q just gives medullary thyroid carcinoma alone, and the
answer is RET. Another gives groin pain (urolithiasis due to hypercalcemia) + a neck tumor,
and the answer is RET.
- Codes for p53 tumor-suppressor protein; halts the cell cycle in the setting of cellular
damage so that DNA repair can occur.
- Li-Fraumeni syndrome = congenital mutation in TP53 leading to cancers of various organ
TP53 systems.
- HY answer on NBME for the gene mutated in cancer that has metastasized.
- Pleiotropy = one gene has multiple effects; TP53 is textbook example, since mutation can
cause many unrelated cancers, such as pancreatic, ovarian, colon, etc.
- Autosomal dominant; hamartin and tuberin proteins.
- Intellectual disability; periventricular nodules (tubers); adenoma sebaceum (aka
angiofibromas, which are skin-colored/reddish papules on cheeks, nose, and in nasolabial
TSC1/2
folds); subungual fibromas (nailbed tumors); cardiac rhabdomyoma (ball-in-valve murmur
that presents as diastolic rumble that attenuates with change of positioning); renal
angiomyolipoma.
- Autosomal dominant; chromosome 3.
- Renal cell carcinoma, PLUS retinal and/or cerebellar hemangioblastomas.
- Pancreatic cysts can also be seen (on NBME).
VHL - The RCC need not be bilateral; don’t confuse with angiomyolipoma of TSC.
- New NBME Q shows picture of gross kidney lesion + tells you patient has cerebellar
hemangioblastoma + retinal angioma; they ask what kind of kidney lesion they’re showing
à answer = “renal adenocarcinoma”; angioma is wrong answer.
- Can be isolated Wilms tumor; the answer on USMLE for kidney tumor in a kid almost
always; presents as painless flank mass in 2-4-yr old. However Wilms tumor can also present
as part of constellation syndromes:
- Denys-Drash syndrome = gonadal agenesis + Wilms tumor.
- WAGR syndrome = Wilms tumor, Aniridia, Genitourinary abnormalities, Retardation (can
WT1
be associated with other genes as well, but just know that WT1 is associated).
- Beckwith-Wiedemann syndrome = fetal macrosomia, macroglossia, hemihypertrophy,
hypoglycemia, and Wilms tumor. Harder Q on 2CK Peds form gives big baby with
hemihypertrophy + doesn’t mention Wilms tumor; they ask what else could be seen à
answer = hypoglycemia.

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Other HY Genes for USMLE

- Wilson disease; autosomal recessive; chromosome 13.
- Copper overload.
- Inability to secrete copper into bile from the liver. Copper is normally excreted by the body
via secretion into bile.
- ­ urinary copper + ¯ serum ceruloplasmin (copper-binding protein in the blood; in the case
of copper overload, body tries to minimize amount carried in blood).
- Buzzy / pass-level detail is Keiser-Fleischer rings, which is copper deposited in the cornea of
ATP7B the eye. Vignette can give you what sounds like Wilson disease, and then the answer is “slit-
lamp exam.”
- Can cause ­ LFTs with cirrhosis, hemolytic anemia, and Parkinsonism.
- Copper deposits in basal ganglia, especially the putamen.
- Parkinsonism in a young patient = Wilson until proven otherwise.
- In old patient, Parkinsonism = Parkinson disease, normal pressure hydrocephalus, Lewy-
body dementia, or progressive supranuclear palsy.
- Treat with the copper chelator penicillamine.
- Cystic fibrosis; chromosome 7; AR.
- Codes for chloride channel.
- Channel is normally located at cell surface; if mutated, it instead remains sequestered in
the rough endoplasmic reticulum.
- “Abnormal protein folding” is answer on NBME for result of CFTR mutations.
- Delta F508 (DF508) is most common mutation, which is deletion of phenylalanine 508.
- CF is textbook example of allelic heterogeneity, which means many different mutations can
cause the same disease. For this reason, most genotyping panels lack sensitivity, and sweat-
chloride test showing >60 mEq/L is most diagnostic/accurate. A nasal test showing increased
potential difference can also be performed.
CFTR - Presents as child with chronic history of lung infections (Pseudomonas exceeds S. aureus
after age 10).
- Secretions in the alveoli and pancreatic ducts are inspissated (meaning desiccated / dried
up within a lumen), making them sticky. This leads to exocrine pancreatic insufficiency,
where enzymes can’t make it to the duodenum à fat-soluble vitamin malabsorption à
NBME exams love vitamin E deficiency in CF in particular (presents as neuropathy).
- Meconium ileus at birth; buzzy, but often not mentioned in questions.
- Phenotypically normal siblings of affected children have 2/3 chance of being carrier (holds
true for any AR disorder).
- Ivacaftor/lumacaftor are newer treatments. They are known as potentiators/correctors,
where the Cl- channel structure, location, and function are improved.
- XR disorder caused by mutation in dystrophin.
- Mutation results in disruption of a-/b-dystroglycan, which is required for proper internal
cytoskeletal anchoring of the muscle cell to the extracellular matrix.
- Presents with pseudohypertrophy, where muscles appear large but are replaced with
DMD fibroadipose tissue (connective tissue stromal cells).
- Duchenne presents in a young boy who implements Gower maneuver to stand up (uses
arms to walk up off the floor because leg muscles are weak).
- Becker presents in adolescence or young adulthood (less severe form of Duchenne).
- Duchenne is classically frameshift mutation; Becker is classically not frameshift.
- Marfan syndrome; autosomal dominant; chromosome 15.
- Codes for fibrillin, which is a glycoprotein that forms a sheath around elastin.
- Tall, lanky body habitus with flat feet, chest wall abnormalities (i.e., pectus excavatum or
FBN1/2 carinatum), flat feet (pes planus), scoliosis, mitral valve prolapse (mid-systolic click),
increased risk for aortic dissection (can retrograde propagate toward aortic root, causing
root dilatation and aortic regurgitation [decrescendo diastolic murmur]).
- Is not associated with berry/saccular aneurysms (unlike Ehlers-Danlos and ADPKD).
- Fragile X; X-linked; caused by CGG trinucleotide repeat (TNR) expansion.
FMR1
- Results in hypermethylation of the gene and transcriptional silencing.

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- Presents as boy with large, everted ears; long, narrow jaw; macroorchidism; and
intellectual disability.
- Can sometimes be symptomatic in females if skewed X-inactivation (lyonization).
- Friedreich ataxia; Frataxin gene; GAA TNR expansion.
FXN
- Presents with ataxia (you guessed it), scoliosis, cardiomyopathy, and decreased reflexes.
- Glucose-6-phosphate dehydrogensase deficiency; X-linked recessive.
- Presents as boy with hemolysis leading to jaundice (unconjugated hyperbilirubinemia)
G6PD following oxidizing drug (e.g., sulfa, dapsone, primaquine).
- Heinz bodies (denatured hemoglobin) and bite cells (degmacytes; partially phagocytosed
RBCs due to removal of Heinz bodies) are seen.
- Hereditary hemochromatosis; autosomal recessive; chromosome 6.
- Iron overload.
- Mechanism USMLE wants is “increased intestinal iron absorption.”
- Body has poor ability to excrete iron; occurs naturally via menses in women; otherwise
there are minor losses via skin shedding.
- Main iron regulation is via shutting off intestinal absorption; this is impaired in
hemochromatosis.
- Usually presents in adulthood in males first (because of menses in women).
- Can present as “bronze diabetes” à hyperpigmentation due to hemosiderin deposition in
skin + ­ fasting sugars (iron deposition in tail of pancreas).
- Miscellaneous other findings can be seen like infertility (iron deposition in hypothalamus,
anterior pituitary, or gonads), cardiomyopathy, or arthritis (pseudogout).
- Hereditary hemochromatosis, primary hyperparathyroidism, and hypothyroidism are 3
most important causes of pseudogout. I used to only discuss the former two with students
HFE
over the years, but the latter shows up on a new 2CK NBME exam where they mention
chondrocalcinosis (calcium deposition in cartilage).
- USMLE wants you to know there is ­ risk of hepatocellular carcinoma. There is easy NBME
Q of hemochromatosis where they ask what patient is at increased risk for, and the answer
is simply “hepatocellular carcinoma.”
- Diagnose with ferritin >300 mg/dL. Transferrin saturation will also clearly be ­.
- It is exceedingly rare that ferritin is >300 in other conditions, however this can occur in
lymphoma and leukemia, where ­ ferritin is a poor prognostic marker in non-Hodgkin
lympoma. There is one NBME Q on 2CK where ferritin is 300 where it’s not
hemochromatosis, but USMLE won’t play gotchya.
- Treat with serial phlebotomy, not chelators.
- Chelators such as deferoxamine or deferasirox are for secondary hemochromatosis due to
transfusional siderosis (i.e., repeated blood transfusions that contain iron, for e.g., b-
thalassemia major).
- Huntington disease; autosomal dominant; CAG TNR expansion on chromosome 4.
- Presents as cognitive decline and choreoathetosis, usually in patient 30-40s.
- Chorea = fast, purposeless, jerky movements.
- Athetosis = slow, writing movements.
HTT
- TNR disorders demonstrate anticipation, which means they become more severe and
earlier-onset with each generation due to further expansion of the TNR, so the vignette can
say the, e.g., 40-year-old patient had parent with similar symptoms appearing in his/her 50s.
- If the USMLE asks you for which part of the brain is fucked up, choose caudate nucleus.
- Codes for NF-kB protein, which is involved in a myriad of cell-signaling processes.
- For whatever magical reason, a repeated question across NBME exams wants you to know
that “IkB releases NF-kB after undergoing phosphorylation.”
NFKB1/2
- NF-kB is then free to go to the nucleus to upregulate transcription of 150+ genes.
- Glucocorticoids (i.e., such as prednisone) partially exert their immunosuppressant effects
by inhibiting NF-kB-mediated gene expression.
- Autosomal dominant polycystic kidney disease.
- The answer on USMLE if disease starts as an adult (i.e., 30s-40s).
PKD1/2
- Cysts are technically present early in life, but only become clinical as adult (i.e., ­ BP and ­
RFTs).

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- These patients have ­ BP due to ­ RAAS (compression of microvasculature of kidney due

to enlarging cysts).
- Can cause saccular (berry) aneurysms of the circle of Willis à risk for subarachnoid
hemorrhage.
- Highest yield point is that serial blood pressure checks are correct over circle of Willis MR
angiogram screening. Latter is wrong answer on USMLE. MR angiogram screening of circle
of Willis is only done when there is (+) family Hx of SAH or saccular aneurysms.
- Step 1 NBME gives easy vignette of ADPKD, and then the answer is just “polycystin” as the
protein that’s fucked up. Sounds obvious, but it’s asked so I’m mentioning it.
- Cystic kidneys are part of “ciliopathies,” which is obscure term that refers to conditions
where cilia are abnormal. Polycystin is a protein required for cilia function on renal
epithelium.
- Most common extra-renal location for cysts is the liver (85% by age 30).
- Autosomal recessive polycystic kidney disease.
PKHD1 - The answer on USMLE for cystic kidneys in pediatrics.
- Can be associated with hepatic fibrosis.

Notable tumor markers for USMLE

- Alpha-fetoprotein.
- Yolk sac tumor (aka endodermal sinus tumor) à the answer on USMLE for a testicular or
AFP
ovarian tumor in a child.
- Mixed germ cell tumors (if hCG also high).
- Alkaline phosphatase.
ALP - Placental ALP can sometimes be increased in seminoma.
- Unrelated to increased ALP in bile duct obstruction or bone fractures.
CA 15-3 - Breast cancer.
CA 19-9 - Pancreatic cancer.
- Increased in medullary thyroid carcinoma.
Calcitonin
- Normal role of calcitonin is to inhibit osteoclast activity.
- Carcinoembryonic antigen.
CEA
- Colon cancer (although non-specific).
- Human chorionic gonadotropin.
hCG - Choriocarcinoma.
- Mixed germ cell tumors (if AFP also high).
- Lactate dehydrogenase.
LDH
- Dysgerminoma.
- Prostate-specific antigen.
PSA
- Prostate cancer.

HY autoantibodies for USMLE

HY disease association HY antibodies
Anti-b2-microglobulin; anti-cardiolipin; lupus
anticoagulant (the latter is the name for either of
the former two if the patient happens to have SLE);
Antiphospholipid syndrome
Abs associated with recurrent miscarriage; can
cause false-positive syphilis screening (e.g., SLE
patient who gets positive syphilis VDRL test)
Anti-hemidesmosome (bullous pemphigoid antigen);
Bullous pemphigoid hemidesmosomes connect the dermis to epidermis;
cause a linear immunofluorescence on skin biopsy

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Anti-desmosome (anti-desmoglein 1 and 3);

Pemphigus vulgaris desmosomes connect adjacent cells in epidermis;
cause a net-like immunofluorescence on skin biopsy
Anti-collagen IV (anti-GBM; glomerular basement
membrane); causes linear immunofluorescence on
Goodpasture syndrome
renal biopsy; don’t confuse with Alport syndrome,
which is mutations in type IV collagen (not Ab)
c-ANCA; anti-proteinase 3 (PR3); dumb mnemonic I
Granulomatosis with polyangiitis (Wegener) created that helps some of my students: Water
Closet (Wegener C-ANCA)
Eosinophilic granulomatosis with polyangiitis
p-ANCA (anti-myeloperoxidase)
(Churg-Strauss)
Microscopic polyangiitis p-ANCA (anti-myeloperoxidase)
Anti-double-stranded DNA (dsDNA); anti-Smith
(ribonucleoprotein); anti-hematologic cell line Abs;
should be noted that dsDNA goes up in acute flares
+ best reflects renal prognosis; anti-Smith is more
Systemic lupus erythematosus (SLE) specific than anti-dsDNA; thrombocytopenia is an
exceedingly HY finding in SLE due to Abs; if all cell
lines are down in SLE, aplastic anemia (¯ bone
marrow production) is wrong answer; choose
“increased peripheral destruction” as answer
Anti-histone; caused by various drugs (Mom is HIPP)
Drug-induced lupus (DIL) à Minocycline, Hydralazine, INH, Procainamide,
Penicillamine
Anti-post-synaptic acetylcholine receptor;
Myasthenia gravis
sometimes a paraneoplastic of thymoma
Anti-presynaptic voltage-gated calcium channel;
Lambert-Eaton
sometimes a paraneoplastic of small cell lung cancer
Anti-Hu/-Yo; ataxia in someone with small cell lung
Small cell cerebellar dysfunction
cancer and negative CNS imaging
Polymyositis / Dermatomyositis Anti-Jo1; can be a paraneoplastic of ovarian cancer
Limited-type systemic sclerosis / scleroderma Anti-centromere
Diffuse-type systemic sclerosis / scleroderma Anti-topoisomerase I (Scl-70)
Primary biliary cirrhosis Anti-mitochondrial
Autoimmune hepatitis Anti-smooth muscle
Rheumatoid factor (an IgM against the Fc region of
Rheumatoid arthritis IgG); anti-cyclic citrullinated peptide (CCP); anti-CCP
is more specific than rheumatoid factor
Sjogren syndrome Anti-SS-A (anti-Ro); anti-SS-B (anti-La)
Anti-TSH receptor (this antibody is called thyroid-
Graves disease stimulating immunoglobulin, or TSI, and activates
the TSH receptor)
Anti-thyroperoxidase (anti-microsomal); anti-
Hashimoto thyroiditis
thyroglobulin
Pernicious anemia Anti-parietal cell; anti-intrinsic factor
Anti-endomysial (aka anti-gliadin); anti-tissue
Celiac disease transglutaminase IgA; antibody screening will yield
false-negatives if patient also has IgA deficiency
Anti-glutamic acid decarboxylase(anti-GAD); anti-
Type I diabetes mellitus
zinc transporter 8
Primary membranous glomerulonephritis Anti-phospholipase A2 receptor
Anti-ADAMTS13 (a matrix metalloproteinase that
Thrombotic thrombocytopenic purpura
cleaves vWF multimers)
Immune thrombocytopenic purpura
Anti-GpIIb/IIIa on platelets (platelet aggregation)
(aka idiopathic thrombocytopenic purpura)

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Anti-platelet factor 4-heparin complex (anti-PF4-

Heparin-induced thrombocytopenia (HIT)
heparin)
Addison disease Anti-21-hydroxylase
Anti-myosin; anti-valve-derived proteins; should be
noted that these Abs are formed against S. pyogenes
Rheumatic heart disease
M protein and almost always cross-react with the
mitral valve (molecular mimicry)
Neuromyelitis optica (Devic syndrome) Anti-aquaporin 4 (asked on 2CK Neuro form)
IgM against RBCs (CMV and Mycoplasma are HY
Cold autoimmune hemolytic anemia infectious associations); will result in positive
Coombs test
IgG against RBCs (various miscellaneous drugs and
Warm autoimmune hemolytic anemia infections); also associated with chronic lymphocytic
leukemia; will result in positive Coombs test

Hypersensitivity types for USMLE

Type Mechanism
- Immediate (within minutes): Antigen binds to Fab region of IgE on mast cell; adjacent IgE crosslink;
mast cell degranulates and secretes histamine + tryptase.
I - Late (within hours): Cytokines recruit inflammatory cells (e.g., eosinophils) à further
inflammation.
- HY examples are anaphylaxis (i.e., bee sting, peanut allergy), atopy / asthma.
- Antibody production against cells, tissues, receptors.
- HY examples are Graves disease, Hashimoto thyroiditis, Goodpasture syndrome, pernicious
II
anemia, HIT, ITP, rheumatic fever, myasthenia gravis, Lambert-Eaton, bullous pemphigoid,
pemphigus vulgaris.
- Antibody-antigen complexes (i.e., antibodies simply bind to antigen and deposit; the antibodies do
not target cells, tissues, or receptors).
III
- HY examples are post-streptococcal glomerulonephritis, polyarteritis nodosa, SLE, arthus reaction,
serum sickness.
- T cell response (only HS type not associated with antibodies); can be mediated by either CD8+ or
IV CD4+ T cells.
- HY examples are PPD skin test for TB, contact dermatitis, graft-vs-host disease.

Notable Carcinogens for USMLE

Alcohol - Oral/pharyngeal SCC; SCC of esophagus; hepatocellular carcinoma; breast cancer.
- Answer on USMLE if they mention peanut farming in China.
Aflatoxin
- Can cause hepatocellular carcinoma. On one offline Step 1 NBME Q.
- Answer on USMLE for hematuria in textile factory worker.
Aniline dyes - Can cause transitional cell carcinoma (TCC) of the bladder.
- Aniline dyes are a type of industrial clothing dye.
- Answer on USMLE for Mees lines (white lines on nails), or palms + soles rash, in a
gardener.
Arsenic
- Arsenic is in many fertilizers; a small amount causes plants to flourish; poisoning seen
in gardeners/landscapers, clearly.

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- A 2CK NBME Q gives pic of Mees lines in gardener à answer = arsenic.

- Asbestosis à restrictive lung disease with ferruginous bodies and
supradiaphragmatic / pleural plaques. Can develop into mesothelioma; NBME Q shows
pic of ferruginous body and asks what cell initiates pulmonary fibrosis à answer =
macrophage.

Asbestos

(Ferruginous bodies in asbestosis)

- The pleural / supradiaphragmatic plaques can be described simply as “soft tissue

densities” seen on CXR.
- Mesothelioma à can appear as whitish cancer that circumferentially envelops the
lungs; NBME Q asks for “mesothelial cells” as the answer.
- Shipyard workers, construction workers, and electricians are buzzy professions on
USMLE for asbestosis.
Benzene - Leukemias.
- Highest yield = esophageal squamous cell carcinoma + hepatocellular carcinoma.
Ethanol
- Breast cancer carries theoretical association but USMLE doesn’t give a fuck.
Ionizing radiation - Thyroid cancer; leukemias.
- Main compound in some types of moth balls.
2-naphthylamine
- Collecting duct cancer (on NBME; I also discuss more in HY Renal PDF).
Nitrosamines - Gastric cancer; associated with ­ consumption of cured meats.
Processed meats - Colorectal cancer.
- Adenocarcinoma of the lung in non-smokers.
Radon - Due to background radiation from the ground; considered the second-most
important cause of lung cancer after smoking.
Smoking/tobacco - Basically every cancer.
UV light - Skin cancer.
Vinyl chloride - Hepatic angiosarcoma.

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Notable Paraneoplastic syndromes for USMLE

- Acanthosis nigricans. Should be noted that almost always this finding simply
means insulin resistance, but just be aware it can also be associated with visceral
malignancies like gastric. “Visceral malignancy” is a general term that refers to
main organ system cancers like the liver, pancreas, stomach, etc.
Gastric - Sign of Leser-Trelat (sudden appearance of large numbers of seborrheic
keratoses). Can occur with visceral malignancies, like gastric and pancreatic.
- Virchow node (Troisier sign) is a palpable supraclavicular lymph node that is
classically associated with gastric cancer, but can be visceral malignancy in
general. There is also a 2CK NBME Q where Virchow node presents in a Hodgkin.
Ovarian - Can cause dermatomyositis. Weird, but asked on an NBME question.
Pancreatic - Migratory thrombophlebitis (Trousseau sign of malignancy).
- Hypercalcemia (PTHrp secretion, same as squamous cell of lung).
Renal cell carcinoma
- Polycythemia (EPO secretion).
- Hypertrophic osteoarthropathy (clubbing + periostitis).
- Periostitis is inflammation of the periosteum over the bone.
Lung cancer (general) - Classically associated with adenocarcinoma of the lung, but the USMLE doesn’t
specify. They’ll just give you vignette of clubbing + hand pain, and the answer is
“chest x-ray” for next best step in management.
Neuroblastoma - Opsoclonus-myoclonus syndrome (dancing eyes).
- Cushing syndrome (ACTH secretion).
Small cell carcinoma of - SIADH (ADH secretion).
the lung - Lambert-Eaton syndrome (Abs against presynaptic voltage-gated Ca2+ channels).
- Cerebellar dysfunction/ataxia (anti-Hu/-Yo antibodies).
- Hypercalcemia/hypophosphatemia (PTHrp secretion).
Squamous cell
- PTHrp is not the the same as endogenous PTH, which is suppressed due to
carcinoma of the lung
negative-feedback from high calcium.
- Myasthenia gravis (Abs against postsynaptic nicotinic acetylcholine receptors).
Thymoma - Do CXR / chest CT in patients with MG.
- Thymoma can also rarely cause pure-RBC aplasia (i.e., only RBCs are down).

Cancer Stage vs Grade

- How far the tumor has spread.
- TNM system = Tumor size/invasiveness; Lymph nodes; Metastases.
- Cancer that is in situ (i.e., confined superficial to basement membrane) is Stage 0.
- NBME likes the term “microinvasion,” which means “crossed the basement
membrane.”
Stage - If you’re asked about melanoma + invasion to which depth is associated with
worst prognosis, answer = “subcutaneous tissue” or “hypodermis,” not basement
membrane. Even though crossing the BM is HY for microinvasion, which is when
stage has officially increased, prognosis with skin cancer is directly related to
depth of the lesion.
- Cancer that has metastasized to distant organs is highest stage.
- # of mitoses + degree of anaplasia.
- Don’t confuse anaplasia with aplasia. Anaplasia means the degree of
undifferentiation / immaturity of the cells. Aplasia means lack of growth. If a skin
cell, for instance, looks nothing like it’s supposed to and instead resembles a
Grade primitive stem cell, then it has a high degree of anaplasia (i.e., it has reverted to a
more immature / undifferentiated state).
- High number of nucleoli = high protein synthesis = high # of mitoses.
- 1:1 nuclear:cytoplasmic ratio à nucleus is huge à high # of mitoses.
- ­ Ki-67 staining = high grade. Ki-67 is a protein expressed in actively dividing cells.
- For USMLE purposes, stage is more important than grade for prognosis. This is exceedingly HY and
prevalent on NBME exams. Some students get pedantic about grade being more important than stage for

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some brain tumors. I have never once seen this assessed on NBME material and risks getting you questions
wrong.

- For example, an in situ cancer that demonstrates aggressive mitoses and has cells poorly resembling the
native tissue = low stage, high grade.

- A cancer that has metastasized but has cells that are slowly dividing and well-differentiated = high stage,
low grade.

- The way this applies on USMLE is they will ask for which of the following is most likely to indicate the need
for cystectomy in a patient (i.e., their way of asking which has the worst prognosis), and the answer will be
something like, “tumor cells present in sentinel lymph node that are well-differentiated and very slowly
dividing.” The student thinks this doesn’t sound that bad, but it will be the only answer where stage has
increased. All of the other answers might give in situ cancers with high grade, so they sound more sinister,
but are wrong.

Locations of metastases
Metastasizes to Cancer type
- Prostate, breast, and lung cancer all love to metastasize to spine/vertebrae.
I’ve seen this across NBME Qs (and especially on 2CK Neuro CMS Qs), where
they give neurologic findings in patients with cancer and want “epidural spinal
cord metastases,” or “epidural spinal cord compression,” or “metastases to
cauda equina” as answers.
- There is a Step 1 NBME Q where they give lytic lesions of the vertebrae in a
Spine/vertebrae vague 1-2-liner, where multiple myeloma isn’t listed, and they just want
“metastatic breast cancer” as the answer.
- One of the highest yield general principles for USMLE is that prostate cancer
causes osteoblastic metastases, which means they light up on a bone scan.
Pretty much all other cancers cause osteolytic metastases. Occasionally some
cancers such as breast can cause osteoblastic metastases, but for USMLE this
application is essentially nonexistent; just remember prostate for this point.
- Choriocarcinoma loves to go to lung and brain. If they give gynecologic
question + mention pulmonary nodules or stroke-like presentation, this is HY
for choriocarcinoma. Hydatidiform mole is a wrong answer here because,
Lung/brain
even though the latter can progress to invasive mole and choriocarcinoma, if
the Q itself already mentions pulmonary or neuro findings, we know we
already have the cancer, so choriocarcinoma is the better answer.
- Gastric cancer can metastasize hematogenously to ovaries. These are called
Ovaries Krukenberg tumors and will have signet ring cells on biopsy, which contain
mucin.
- USMLE loves direct extension to the omentum for ovarian cancer. There are
Omentum two questions on the Surg forms for 2CK where they say “omental thickening”
and “omental caking.”
- Testicular and ovarian cancers.
Para-aortic lymph nodes - I discuss specific lymph node drainages of cancers in my HY Immuno PDF, but
this one is most important, so I’m including it here.

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Cells of inflammation / approximate timelines

- The cell of acute inflammation. They are “first responders” at sites of inflammation and
are rapidly recruited to the site of injury or infection, where they play a critical role in
the initial response to pathogens or tissue damage within the first 24-48 hours.
- Highly phagocytic cells that engulf and kill microorganisms, foreign antigens, and
cellular debris through.
- Carry out respiratory burst. Phagocytosed microbes are killed via NADPH oxidase is
used to generate H2O2, and via myeloperoxidase to produce bleach.
- Complement protein C5a, IL-8, LTB-4, kallikrein, and platelet-activating factor are pro-
chemotaxis that stimulate/recruit neutrophils to sites of infection and inflammation.
- Pus is an accumulation of dead neutrophils, cellular debris, pathogens, and tissue fluids
at the site of infection or inflammation.
- Normally ~50-60% of WBCs on USMLE labs. If > 60%, we call this neutrophilic shift,
which suggests bacterial infection. “Bands” are immature neutrophils that are increased
in bacterial infections.
- Neutrophilia (high neutrophils) seen where total WBC count is >30,000/µL, we call this
“reactive granulocytosis,” which is aka leukemoid reaction, or “increased leukocyte
release from bone marrow post-mitotic reserve pool.” WBC count should normally be 4-
11,000. If bacterial pneumonia or ruptured appendix, for instance, we expect WBCs to
maybe be 12-20,000s, but >30k, it’s leukemoid reaction. “-Oid” means looks like but
ain’t, so it looks like leukemia because the WBC is so high, but rather than leukemic cells
on smears, we see neutrophils instead. I discuss this stuff in more detail in the HY
Heme/Onc PDF.
- Neutropenia (aka agranulocytosis) is seen with chemo-/radiotherapy, viral infections
Neutrophils (e.g., Parvo B19), and drugs (e.g., clozapine, methotrexate, carbamazepine).

- The cell of chronic Inflammation. Following neutrophils, they begin predominance of

migration into tissues after 48 hours. There is an NBME Q, for example, where they say
there is a scarred segment of Fallopian tube in chronic pelvic inflammatory disease
Macrophages (PID), and they ask which cell is most likely to predominate on biopsy, and the answer is
macrophage. Neutrophil is wrong because they specify chronic.
- Antigen-presenting cells (APCs). Phagocytose antigens and present it them to CD4+ T
cells, initiating adaptive immune responses.

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- Produce cytokines that carry out a variety of effects. TNF-a causes increased vascular
permeability and swelling. IL-1 causes fever. IL-6 causes acute-phase protein release by
the liver (e.g., CRP). IL-12 stimulates CD4+ T cells.
- Play a role in septic shock, both due to endotoxin as well as superantigen.
- Shock due to endotoxin: Lipid A of lipopolysaccharide (LPS) binds CD14 (Toll-
like receptor; TLR) on macrophages, leading to release of cytokines, namely
TNF-a (hypotension; vasodilation; vascular permeability) and IL-1 (fever).
- Shock due to superantigen: toxic shock syndrome toxin (TSST) of S. aureus or
exotoxin A of S. pyogenes cause toxic shock syndrome and toxic shock-like
syndrome, respectively. Both toxins bridge MHC-II on the macrophage with T
cell receptor (TCR) on CD4+ T cells, causing release of cytokines from
macrophages.
- Can organize into granulomas, which are aggregations of macrophages that fuse to
form a multi-nucleated collection (i.e., granuloma). Activated macrophages are aka
epithelioid macrophages, or histiocytes. These can be present
idiopathically/miscellaneously in chronic inflammation (e.g., Crohn, sarcoidosis), or can
attempt to phagocytose and digest foreign antigen over the long-term (e.g., remnant
suture material for suture granulomas; ferruginous bodies in asbestosis).
- Non-caseating granulomas in sarcoidosis secrete 1a-hydroxylase, leading to
hypercalcemia (more detail in HY Arrows PDF). Crohn is other HY condition with non-
caseating granulomas.
- Caseating granulomas are seen in TB, fungal infections, and cat scratch disease, as
mentioned earlier.
- Play a role in pathogenesis of atherosclerosis – i.e., phagocytose oxidized lipid particles
(more detail in HY Cardio PDF).
- Tissue repair à promote formation of granulation tissue and fibrosis. They release
growth factors (discussed in below table) that stimulate fibroblasts and endothelial cells,
aiding in wound healing.
- Reside in specific tissues with unique names, such as Kupffer cells in the liver, microglia
in the central nervous system, and alveolar macrophages in the lungs. These tissue-
resident macrophages have specialized functions and contribute to local immune
surveillance.

Growth factors released by macrophages during inflammation

- Transforming growth factor-b.
TGF-b - Stimulates the proliferation and activation of fibroblasts and myofibroblasts,
promoting collagen production and tissue repair; also plays a role in angiogenesis by
stimulating endothelial cell growth.
- Platelet-derived growth factor.
PDGF - Recruits and activates fibroblasts; stimulates smooth muscle cells and endothelial
cells, contributing to blood vessel formation.
- Vascular Endothelial Growth Factor.
- Stimulates angiogenesis.
- USMLE wants you to know that in tumorigenesis, VEGF synthesis is stimulated by
VEGF
localized ¯ pO2. In other words, blood supply to a tumor is the same initially, but we
now have more cells, therefore more oxygen demand, so pO2 at the site of the tumor
falls. This causes VEGF to ­ à angiogenesis à tumor now has adequate blood supply.
- Fibroblast Growth Factor.
FGF
- Stimulates fibroblast proliferation, collagen synthesis, and tissue remodeling.
- Epidermal Growth Factor
EGF - Promotes the proliferation and migration of epithelial cells, which is required for the
re-epithelialization and the closure of wounds.

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Wound healing HY Phases

- Occurs immediately following tissue injury.
- Involves vasoconstriction to reduce bleeding and the formation of clot or
Phase 1: Hemostasis
hemostatic plug to seal the a wound.
- Platelet activation and coagulation cascade ensue.
- First ~3 days.
- Extravasation of WBCs; neutrophils are predominant cell initially, with
Phase 2: Inflammatory
macrophages entering after a couple days.
- Redness (rubor), heat (calor), swelling (tumor), and pain (dolor).
- Days to weeks.
- Granulation tissue formation (pink, vascular tissue rich in type III collagen);
Phase 3: Proliferative
angiogenesis; epithelial cell proliferation; myofibroblast-mediated wound
contraction.
- Weeks to months.
- Type III collagen (pink; weaker) is replaced with type I collagen (white; stronger);
80% of tensile strength is restored in scars; tensile on USMLE = collagen if they
ask for the extracellular matrix protein.
- TGF-b is important for increasing fibroblast migration and proliferation,
Phase 4: Remodeling
increased synthesis of collagen and fibronectin, and decreased degradation of
extracellular matrix by metalloproteinases (all of this is directly from NBME stem).
- Myofibroblast and matrix metalloproteinases are the answers if they ask about
scar contraction.
- Macrophage is the answer if they ask for the cell that initiates fibrosis.

Leukocyte extravasation + chemotaxis HY points, sans the superfluousness

Step 1: Margination + rolling - Carried out by E-, P-and L-selectins on endothelial cells that bind to WBCs.
Step 2: Tight binding - LFA-1/CD-18 integrin is needed; deficient in leukocyte adhesion deficiency.
Step 3: Diapedesis - Carried out by PECAM-1.
- Carried out by LTB-4, IL-8, C5a, kallikrein, platelet-activating factor, and
Step 4: Migration
bacterial products.

Malignant tumor nomenclature

- The word malignant means “has metastatic potential.”
- Type of cancer that originates from epithelial cells (e.g.., skin, breast, prostate, GIT).
- Adeno is a prefix that means “glandular” / “glands.” So an adenocarcinoma is a type of
carcinoma that originates from glandular epithelial cells (e.g., gastric adenocarcinoma à
Carcinoma cancer of stomach glands; prostatic adenocarcinoma à cancer of prostate gland).
- An NBME Q, for example, gives a biopsy that shows cells where morphology is neither
squamous nor glandular in origin, and the answer is small cell. I talk about this in the HY
Pulm PDF, but the point is, adenocarcinoma is wrong because they say “not glandular.”
- Type of cancer that originates from connective tissues (i.e., bones, muscles, cartilage,
blood vessels).
- In contrast to carcinomas, which arise from epithelial cells, sarcomas are characterized
by malignant transformation of mesenchymal cells.
Sarcoma
- Mesenchymal cells are a type of multipotent stem cell found in connective tissues and
have the capacity to differentiate into many different cell types – i.e., osteoblasts,
chondrocytes, adipocytes, and vascular smooth muscle cells.
- HY examples are osteosarcoma, chondrosarcoma, and liposarcoma.
- Malignant tumors that originate from cells that have not fully matured or
differentiated.
Blastoma
- HY examples are neuroblastoma, hemangioblastoma, glioblastoma multiforme,
retinoblastoma, nephroblastoma (aka Wilms tumor).

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- Malignant tumor of glial cells (non-neuronal cells in CNS that provide support and
maintenance functions for neurons).
Glioma
- HY examples are oligodendroglioma, glioblastoma multiforme (GM), and astrocytomas.
You should know for USMLE that GM is a “grade IV fibrillary astrocytoma” (on NBME).
- Malignancies originating from plasma cells.
Myeloma - HY example is multiple myeloma.
- Another example is plasmacytoma, which is a collection of malignant plasma cells.
Melanoma - Malignant tumor of melanocytes.
Lymphoma - Malignant tumor of the lymphatic system (i.e., Hodgkin, non-Hodgkin).
Leukemia - Malignancy of leukocytes (white blood cells).
Benign tumor nomenclature
- Refers to benign tumors.
- HY examples are adenoma (benign tumor of glandular tissue), lipoma (benign tumor of
-Oma adipocytes), meningioma, rhabdomyoma (benign tumor of striated muscle), leiomyoma
(tumor of smooth muscle, which will be uterine fibroids on USMLE), and thyroid toxic
adenomas (secrete thyroid hormone).

Malignancy-associated microbes
- Fungus.
Aspergillus
- Can produce aflatoxin, which increases risk of hepatocellular carcinoma.
- Trematode (fluke); a type of helminth (parasitic worm).
Clonorchis
- Can cause cholangiocarcinoma (cancer of the bile ducts).
sinensis
- Treat with praziquantel.
- Ebstein-Barr virus is part of Herpesviridae (DNA; enveloped; ds-linear).
EBV
- Causes nasopharyngeal carcinoma and B-cell lymphomas (Hodgkin and NHL).
- Spiral-shaped gram-negative rod.
Helicobacter - Causes mucosa-associated lymphoid tissue (MALT) lymphoma, a type of B-cell
pylori lymphoma.
- I discuss H. pylori in detail in the HY Gastro PDF.
HepB/C - Hepatocellular carcinoma
- Human herpesvirus 8 (aka Kaposi sarcoma-associated herpesvirus).
HHV-8
- Kaposi sarcoma.
- Human immunodeficiency virus
- Primary CNS lymphoma at CD4 counts generally <100/µL.
HIV - Immunodeficiency in general can increase risk of squamous cell carcinomas (e.g., anal
SCC in MSM; esophageal SCC in smoking/alcohol; SCC of skin due to sunlight); NBME Qs
can occasionally mention immunodeficiency in Qs to imply SCC.
- Human papillomavirus.
- Squamous cell carcinoma (usually genital/anal).
HPV 16/18
- Yes there are other strains, but chill. USMLE cares about 16/18, not the other ones you
can run off.
- Human T-cell lymphotropic virus.
HTLV - Can cause cutaneous T-cell lymphoma (mycosis fungoides) and T-cell leukemia (Sezary
syndrome).
- Trematode.
Schistosoma - Squamous cell carcinoma of the bladder (patient who swam in lake in Africa).
hematobium - Don’t confuse with transitional cell carcinoma of bladder, which is smoking, aniline
(industrial) dyes, and 2-naphthylamine (moth balls).
Strep bovis - Can increase risk of colorectal cancer (CRC), and endocarditis in setting of CRC.

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Histochemical stains
- Idea isn’t to be exhaustive/superfluous here. Point is to stay HY.
Acid-fast - Mycobacterium; Cryptosporidium parvum.
Desmin - Muscle cells.
Giemsa - Plasmodium (malaria); Trypanosoma (sleeping sicknesses and Chagas disease); Leishmania.
- Hemotoxylin and Eosin.
H&E
- Cell nuclei stain blue (basophilic); cytoplasm and ECM are pink (eosinophilic).
India ink; - Cryptococcus neoformans.
mucicarmine - India ink is black background with white halo’ed yeasts; mucicarmine is red stain.
Oil Red O; - Fat.
Sudan black - I’ve seen these show up in fat embolism Qs, and also for fecal staining in steatorrhea.
- Periodic Acid-Schiff.
- Differentiates glycogen (PAS-positive) from mucin (PAS-resistant). Helps distinguish
PAS glycogen-rich tumors from mucin-rich tissues or tumors.
- Only thing you need to know for USMLE is Whipple disease = “PAS-positive macrophages in
the lamina propria.”
- Stains iron.
Prussian - Sideroblastic anemia (ringed sideroblasts are RBC precursors that contain excess iron
blue deposits in their mitochondria; this image is buzzy for sideroblastic anemia). I talk about this
stuff in detail in my HY Heme/Onc PDF.
Silver - H. pylori, spirochetes (i.e., Treponema pallidum, Borrelia), Leishmania, Pneumocystis.

Collagen disorders
- Found in bone; predominates in late wound healing (white in color); ­ tensile strength than type III.
Type - Osteogenesis imperfecta à fractures at different stages of healing; often mistaken for child abuse;
I blue sclerae (too easy; often omitted from Qs); conductive hearing loss (malformation of ossicles); if
ruled out OI + child abuse, think osteopetrosis.
Type - Found in cartilage, intervertebral discs, and vitreous humor.
II - Stickler syndrome à congenital hearing loss.
- Found in blood vessels; early wound healing (pink in color); ¯ tensile strength compared to type I.
Type - Ehlers-Danlos (vascular type) à hyperextensible skin/joints; easy bruising; aortic
III dissection/regurgitation; mitral valve prolapse (myxomatous degeneration); circle of Willis berry
(saccular) aneurysms.
- Found in basement membranes of the kidney + alveoli; also found in the lens, cornea, and inner ear.
Type - Alport (XR; mutation in type IV collagen); eye/ear problems in male with hematuria.
IV - Goodpasture (Abs against type IV collagen); male 20s-40s with hemoptysis + hematuria; linear
immunofluorescence pattern on biopsy.

Shock types
Systemic vascular Pulmonary capillary wedge pressure
Cardiac output (CO)
resistance (SVR) (PCWP)
Cardiogenic ¯ ­ ­
Hypovolemic ¯ ­ ¯
Septic ­ (early) / ¯ (late) ¯ ¯
Anaphylactic ­ (early) / ¯ (late) ¯ ¯
Neurogenic ¯ ¯ ¯
Obstructive ¯ ­ ¯
- Septic, anaphylactic, and neurogenic are all under the envelope of distributive shock.
- ­ PCWP for cardiogenic is one of the highest yield path points on USMLE.
- For deeper explanations, go to my HY Arrows PDF.

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