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microorganisms

Review
Phage Products for Fighting Antimicrobial Resistance
Yuanling Huang 1,2 , Wenhui Wang 1,2 , Zhihao Zhang 1,2 , Yufeng Gu 1,2 , Anxiong Huang 1,2 , Junhao Wang 1,2
and Haihong Hao 1,2,3,4, *

1 National Reference Laboratory of Veterinary Drug Residues, Huazhong Agricultural University,


Wuhan 430070, China; huangyuanling0226@163.com (Y.H.); wwh6572@163.com (W.W.);
zhangzhihao@webmail.hzau.edu.cn (Z.Z.); guyufeng@webmail.hzau.edu.cn (Y.G.);
anxionghuang@webmail.hzau.edu.cn (A.H.); wangjunhao@webmail.hzau.edu.cn (J.W.)
2 MOA Laboratory for Risk Assessment of Quality and Safety of Livestock and Poultry Products,
Huazhong Agricultural University, Wuhan 430070, China
3 Shenzhen Institute of Nutrition and Health, Huazhong Agricultural University, Shenzhen 518000, China
4 Shenzhen Branch, Guangdong Laboratory for Lingnan Modern Agriculture, Genome Analysis Laboratory of
the Ministry of Agriculture, Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural
Sciences, Shenzhen 518000, China
* Correspondence: haohaihong@mail.hzau.edu.cn

Abstract: Antimicrobial resistance (AMR) has become a global public health issue and antibiotic
agents have lagged behind the rise in bacterial resistance. We are searching for a new method
to combat AMR and phages are viruses that can effectively fight bacterial infections, which have
renewed interest as antibiotic alternatives with their specificity. Large phage products have been
produced in recent years to fight AMR. Using the “one health” approach, this review summarizes
the phage products used in plant, food, animal, and human health. In addition, the advantages
and disadvantages and future perspectives for the development of phage therapy as an antibiotic
alternative to combat AMR are also discussed in this review.

Citation: Huang, Y.; Wang, W.; Keywords: antimicrobial resistance; phage products; advantages and disadvantages of phage therapy;
Zhang, Z.; Gu, Y.; Huang, A.; Wang, development prospects
J.; Hao, H. Phage Products for
Fighting Antimicrobial Resistance.
Microorganisms 2022, 10, 1324.
https://doi.org/10.3390/ 1. Introduction
microorganisms10071324
Antimicrobial resistance is a naturally evolving phenomenon that emerged soon after
Academic Editor: Wiesław Świ˛etnicki the discovery of penicillin in 1940 [1]. Antibiotics are highly efficient against bacterial
infections, saving millions of lives and drastically reducing mortality rates. However,
Received: 27 May 2022
multidrug-resistant bacteria (MDR), extensively drug-resistant bacteria (XDR), and even
Accepted: 27 June 2022
pan-resistant bacteria (PDR) have evolved as a result of antibiotic overuse, abuse, and
Published: 30 June 2022
misuse. In particular, ESKAPE bacteria seriously threaten human health worldwide. Ac-
Publisher’s Note: MDPI stays neutral cording to the latest estimates, approximately 700,000 people worldwide die directly from
with regard to jurisdictional claims in AMR bacteria each year, with that number possibly rising to 1 billion by 2050 [2]. AMR
published maps and institutional affil- is one of the top ten global public health threats facing humans, according to the WHO.
iations. As a result, FAO, WOAH, and WHO attach great importance to this and jointly launched
the “one health” approach to combat AMR [3]. The interdependent relationship between
the food chain and the environment makes resistant bacteria widespread in plants, ani-
mals, food, and humans, and the “one health” approach trinity model is ideally suited to
Copyright: © 2022 by the authors.
address AMR [4,5]. Phages are currently one of the antibiotic alternatives with the most
Licensee MDPI, Basel, Switzerland.
potential because of their ability to effectively combat bacterial infections. Phages are a new
This article is an open access article
distributed under the terms and
alternative therapy under the “one health” approach that can be used to control bacteria in
conditions of the Creative Commons
plants, animals, food, and humans [6]. Currently, phage therapy is emerging globally, and
Attribution (CC BY) license (https:// in this review, we summarize the application of phage products for plants, animals, food,
creativecommons.org/licenses/by/ and human health from the perspective of “one health” from the two databases of phage
4.0/). companies and bacteriophage news [7,8]. Furthermore, the advantages and disadvantages

Microorganisms 2022, 10, 1324. https://doi.org/10.3390/microorganisms10071324 https://www.mdpi.com/journal/microorganisms


Microorganisms 2022, 10, 1324 2 of 22

of phages as antibiotic alternatives to combat AMR and their future development prospects
are also discussed in detail.

2. Phage Biology
As early as 1896, Ernest Hankin discovered antibacterial substances against Vibrio cholerae
from water extracted from the Ganges and Jumna rivers in India, laying the foundation
for the subsequent discovery of phages [9,10]. The term “phage” was introduced by
Félix d’Hérelle after he discovered the “anti-microbe” Shigella in 1917 [11]. Phages are
abundant entities on the planet, with a population of 1031 , which is 10–100 times that
of their obligatory parasitic host bacterium [12]. The genome of phages is composed of
single-stranded (ss) or double-stranded (ds) DNA or RNA, which is encapsulated by a wide
variety of protein capsids. The universal viral taxonomy established by the International
Committee on Taxonomy of Viruses (ICTV) divides phages into polyhedral, filamentous,
pleomorphic, and tailed according to capsid morphology [13]. Phages can be classified into
temperate and virulent based on their life cycle and reproductive characteristics. However,
the process of bacterial infection is different between temperate and virulent phages.
Virulent phages enter the lytic cycle, which usually consists of five stages. The tail
filament first adsorbs to a specific receptor on the surface of the host bacteria. These
receptors can be located on cell walls, capsular polysaccharides, outer membrane proteins,
efflux pumps, or appendages, such as pili and flagella [11] (Figure 1A). Second, the phage-
derived enzymes (such as endolysins) lyse the peptidoglycan of the cell wall and the tail
pipe penetrates through the cell membrane to inject its DNA into the host bacteria [14].
Third, phages perform biosynthesis, such as nucleic acid replication, RNA transcription,
and protein translation in dormitory cells. Fourth, phages assemble into progeny phages.
Finally, when the number of progeny phages reaches a certain threshold, bacteria lyse and
release progeny phages [15] (Figure 1B). For Gram-negative bacteria, lysis is achieved by
three different functional proteins, holins, endolysins, and spanins, which act on the inner
membrane, peptidoglycan, and outer membranes of the cell envelope, respectively [16].
Temperate phages differ from virulent phages in a number of important ways. For example,
temperate phages integrate their genomes into the chromosomes of host bacteria, which do
not lyse but enter the lysogenic cycle. Phages grow and multiply with host bacteria [17].
Under certain conditions, temperate phages can also enter the lytic cycle, depending mainly
on phage-encoded repressors and regulators, as well as the control of phage enzymes [18].
For example, under stress responses and light, temperate phages can initiate the expression
of lytic genes. Temperate phages can regulate the gene expression and behavior of bacteria
through different mechanisms and enhance phage-host fitness [19]. In addition, both
virulent and temperate phages have a pseudo-lysogenic nature, which means that viral
DNA is present in the host bacteria in a form similar to a plasmid and the host at this
moment is only the vector of the phage [14,18].
The key to killing bacteria by phages depends on lysing the bacterial cell wall and
virulent phages are generally selected for treatment. It has commonly been assumed that
icosahedral DS DNA phages containing tails can effectively treat human and animal infec-
tions [20]. Bacteria may acquire resistance genes or genes with pathogenic potential after
the lysogenic transformation of temperate phages and they are generally not recommended
for therapeutic purposes [11]. However, with advances in synthetic biology, temperate
phages can be designed to interfere with bacterial intracellular processes and cause bacte-
rial cell death. Alternatively, genomes of temperate phages were engineered to eliminate
known virulence genes involved in the lysogenic cycle [21]. The current crisis of AMR
makes phage therapy re-emerge globally and the cases of phage therapy in preclinical
research are also gradually increasing [22–24].
Microorganisms 2022,
Microorganisms 10,10,
2022, 1324
x FOR PEER REVIEW 3 of 320of 22

Figure1.1.Mechanism
Figure Mechanism ofof phage
phage infestation
infestation of
of bacteria.
bacteria. (A)
(A)Receptors
Receptorsfor
forphage
phageadsorption
adsorptionononbacte‐
bacteria
ria (purple
(purple represents
represents porins,
porins, blueblue represents
represents efflux
efflux pumps,
pumps, yellow
yellow representsflagella,
represents flagella,red
redrepresents
repre‐
sents pili, and gray represents capsular polysaccharide) (B) Described five phases of a phage lytic
pili, and gray represents capsular polysaccharide) (B) Described five phases of a phage lytic cycle
cycle and a lysogenic cycle.
and a lysogenic cycle.

3.3.Phages
PhagesProducts
Products in in Plant
Plant Health
Health
More than 200 plant bacteria have been reported to cause significant crop losses
More than 200 plant bacteria have been reported to cause significant crop losses dur-
during preharvest, storage, and transport [25]. Antibiotics have also been used against
ing preharvest, storage, and transport [25]. Antibiotics have also been used against plant
plant pathogens since World War II, and AMR has been widespread in some plants and
pathogens since World War II, and AMR has been widespread in some plants and crops
crops due to the dissemination of resistance genes in the environment. For example, an‐
due to the dissemination of resistance genes in the environment. For example, antibiotic
tibiotic resistance genes (strAB) have emerged in Pseudomonas syringae, Xanthomonas
resistance genes (strAB) have emerged in Pseudomonas syringae, Xanthomonas campestris,
campestris, and Erwinia amylovora, triggering resistance to streptomycin [26]. The first ex‐
and Erwinia amylovora, triggering resistance to streptomycin [26]. The first experimental
perimental evidence that phages may be associated with plant pathogenic bacteria was
evidence that phages may be associated with plant pathogenic bacteria was the discov-
the discovery that filtrates obtained from cabbage were able to inhibit cabbage decay
ery that filtrates
caused by Xanthomonas obtained from cabbage
campestris pv. [27]. were able to inhibit
Subsequently, in 1925cabbage
Kotila and decay
Coons caused
used by
Xanthomonas campestris
phages to prevent soft rot caused by Pectobacterium atrosepticum and Pectobacterium ca‐ to
pv. [27]. Subsequently, in 1925 Kotila and Coons used phages
prevent
rotovorumsoftsubsp
rot caused
on potatoby Pectobacterium
tuber and carrot atrosepticum and Pectobacterium
slices, respectively. In 1935, carotovorum
Thomas used subsp
onphage against the phytopathogen Pantoea stewartii to significantly reduce the incidence the
potato tuber and carrot slices, respectively. In 1935, Thomas used phage against
phytopathogen
[28]. Modern studiesPantoeahavestewartii
shown to significantly
the effectivenessreduce the incidence
of phages for plant[28]. Modern
health and studies
can
have shown the effectiveness of phages for plant health and can target
target drug‐resistant plant‐bacteria with extremely high efficiency. For example, the iso‐ drug-resistant plant-
bacteria
lation ofwith extremely
a novel phage high
Xoo‐sp2efficiency.
infectedFor example,
with the isolation
Xanthomonas of a novel
oryzae from phage
soil can Xoo-sp2
effective‐
infected with
ly control Xanthomonas
bacterial blight oryzae
in ricefrom
[29]. soil
Thecan effectively
engineered control
phage Y2 bacterial blight in
can effectively rice [29].
control
The
andengineered
rapidly detectphage Y2 can
Erwinia effectively
amylovora, control
a fire andpathogen
blight rapidly detect Erwinia amylovora,
[30]. Recently, three phage a fire
blight pathogen
cocktails [30]. Recently,
(φEa2345‐6, φEa1337‐26, three phage
and cocktails
Eh21‐5) (ϕEa2345-6,
are effective against ϕEa1337-26,
fire blight in and Eh21-5)
apples
are
andeffective against
pears. Four fire blight
phage in apples
cocktails (Eram2, and pears. Eram24,
Eram26, Four phage andcocktails
Eram45)(Eram2, Eram26,
are effective
Eram24,
against and Eram45)
fire in blighted arepears
effective
[31]. against fire in blighted
Xylella fastidiosa (Xf) is apears
novel [31]. Xylella
plant fastidiosa
pathogen with(Xf)
a is
awide
novelrange
plantofpathogen
plant hosts withanda awide rangeof
spectrum ofinsect
plant species
hosts andthata are
spectrum of insect
now causing species
signifi‐
cantare
that damage to worldsignificant
now causing agriculture. Phage is
damage toaworld
novel agriculture.
therapy to control
Phagediseases
is a novelcaused by to
therapy
Xf [32,33].
control Given
diseases the current
caused invasion
by Xf [32,33]. of Xfthe
Given into agroecosystems,
current invasion of these
Xf intophages can be
agroecosystems,
implemented
these phages can as biological
be implemented agents and are excellent
as biological agentscandidates
and are for development
excellent candidatesinto for
phage cocktails.
development into phage cocktails.
Asphage
As phage studies
studies advance,
advance,the thenumber
numberofofphage
phageproducts
products targeting
targeting plant
plantpathogens
pathogens
ininthe
themarket
market is is also
also increasing.
increasing. At Atpresent,
present,thetheUnited
UnitedStates
StatesEnvironmental
Environmental Protection
Protection
Agency(USEPA)
Agency (USEPA)has hasapproved
approvedseveral
severalphage
phageproducts
productstotofight
fight plant
plant pathogens,
pathogens, and
and com-
mercial phage products are summarized in Table 1. Only six phage products for plant health
have been commercialized, mostly for soft rot Enterobacteriacea, Clavibacter michiganensis,
Microorganisms 2022, 10, 1324 4 of 22

Xanthomonas citri, and Erwinia amylovora, which are all prevalent plant pathogens. Om-
niLytics (Kuala Lumpur, MY, USA) was the earliest registered phage-based biopesticide
product and its AgriPhage™ product line has been approved by the USEPA for the control
of bacterial diseases in citrus, tomato, apple, and pear. In addition, the product also obtains
an Organic Materials Review Institute (OMRI) listing for commercial organic growers.
Enviroinvest Erwiphage PLUS (Hungary) is the second company to obtain a biopesticide
registration and its product Erwiphage can fight fire blight caused by Rosaceae plants.
The Biolyse® BP product, developed by APS Biocontrol (Dundee, UK), is a phage-based
potato tuber wash for the prevention of soft rot during storage. Fixed-Phage (Glasgow,
UK) also has a product for a variety of bacteria (agriPHIX™) that plays a significant role in
improving the storage of a range of crops. In conclusion, there are a few phage products
for plants that need to be further developed.

Table 1. Commercial phage products for plant health.

Regulatory
Target Bacteria Company Products Certifications Application Ref.
Approval
Food processing assistants
Soft rot APS Biocontrol
Biolyse® BP Approved UK, European in the potato packaging [34]
Enterobacteriacea Ltd. (SCO)
industry
Clavibacter AgriPhage
Tomato bacterial canker [35,36]
michiganensis CMM™

OmniLytics Inc. AgriPhage™


Xanthomonas citri EPA approved USA, Canada Citrus canker
(USA) Citrus Canker
[27]
AgriPhage™ Fire blight for apples
Fire Blight and pears
Erwinia amylovora
Erwiphage PLUS Fire blight caused by plants
Erwiphage Hungary [37]
(HU) in the rose family
Undefined
Effective improvement of
Variety of bacteria Fixed-Phage (UK) agriPHIX™ UK [38]
storage for a range of crops

4. Phage Products in Animal Health


The indiscriminate and extensive use of antibiotics in animals has been one of the prin-
cipal reasons for the rapid spread of AMR. The new EU law prohibiting the prophylactic
use of antibiotics in farmed animals was implemented in 2022 and the use of antibiotics is
also strictly regulated in the United States and Canada [39]. The recent resurgence of phage
therapy has also prompted the extensive application of phages in veterinary medicine. The
first known therapeutic use of phages in veterinary medicine was associated with Felix
d’Herelle, who used phages in 1919 to prevent and treat Salmonella infections in chickens
and effectively reduce mortality in chickens [40]. However, when Pyle used phage therapy
in 1926 to treat Salmonella Enteritidis infection in chickens, the results were less than encour-
aging [41]. Until the 1980s, William Smith reconsidered the use of phage therapy in animals
and experimented with chickens, cattle, and pigs [42]. The early British team conducted a
small clinical trial of a phage cocktail for canine otitis media caused by P. aeruginosa in 2010
and the results were greatly encouraging [43]. Subsequently, the application of phages in
animals has been increasing, mainly for treating E. coli and Salmonella infections in poultry
and pigs, as well as mastitis in cattle caused by S. aureus [44]. In aquaculture, phages are
also effective against Vibrio, Pseudomonas, and Aeromonas, reducing fish mortality [45].
The preharvest application of phages can effectively reduce the infection and coloniza-
tion of live poultry and minimize the risk of pathogens entering the food chain, thereby
reducing the infection of zoonotic bacteria [46]. At present, phage products in animals
mainly focus on the preharvest application of livestock, poultry, and the clinical appli-
cation of pets. The detailed commercial phage products used in animals are shown in
Table 2. A total of 9 of the 38 veterinary phage products counted have been approved by
the FDA and 3 by the European EFSA. The products developed by Intralytix (Baltimore,
Microorganisms 2022, 10, 1324
Microorganisms 2022, 10, x FOR PEER REVIEW 5 of 22 5 of 2

by theon
AR, USA) mainly focus FDA
pet and
food3 safety
by the and
European EFSA.intervention.
preharvest The products The developed
product byline
Intralytix
of (Balti
more, AR, USA) mainly focus on pet food safety and preharvest
PhagePharm (Qingdao, China) focuses on common pathogens in the environment and is intervention. The prod
uct line of PhagePharm (Qingdao, China) focuses on common pathogens in the envi
used as an environmental improver, and the product line of Fixed-Phage (UK) is mostly
ronment and is used as an environmental improver, and the product line of Fixed‐Phag
phage cocktails. Figure 2A reveals that 20 mono-component phage products in the market
(UK) is mostly phage cocktails. Figure 2A reveals that 20 mono‐component phage prod
almost target E. coli, Salmonella, and C. perfringens in poultry. A variety of phage cocktail
ucts in the market almost target E. coli, Salmonella, and C. perfringens in poultry. A variet
products also target
of the
phageinfection
cocktail of these bacteria.
products Most
also target the veterinary
infection of phage products
these bacteria. areveterinar
Most
mainly in the form of food
phage additives
products in animal
are mainly feed of
in the form orfood
drinking water
additives to prevent
in animal feed orand
drinking wa
control bacterial diseases. Only
ter to prevent a few
and phage
control products
bacterial areOnly
diseases. made intophage
a few gel formulations
products are made int
for topical epidermic
gel medication,
formulations such as Staphage
for topical Lysate
epidermic (SPL)® ,such
medication, a phage productLysate
as Staphage from (SPL)®,
phage
Delmont Laboratories product fromPA,
(Swarthmore, Delmont
USA),Laboratories
which is also the only staphylococcal
(Swarthmore, PA, USA), which is also the on
product
approved for use inly Staphylococcus
staphylococcal product
canis approved for use[47].
skin infections in Staphylococcus
In contrast, canis
phage skin infections [47]. In
products
targeting companioncontrast, phage
animals products
remain to targeting
be further companion animals
investigated, remain tothe
especially be further
study investigated
of
especially
bacterial dermatology, which themay
study of bacterial
have dermatology,
significance which may have significance in the future
in the future.

Figure 2. Analysis of phage products from the perspective of the “one health” approach. (A) Targeted
bacteria for mono-component phage products in animals. (B) Targeted bacteria for phage products in
food processing. (C) Targeted bacteria for mono-component phage products in humans. (D) Main
dosage forms of phage products in human therapy. (E) Main routes of administration for human
phage products.
Microorganisms 2022, 10, 1324 6 of 22

Table 2. Commercial phage products for animal health.

Regulatory
Target Bacteria Company Products Certifications Application Ref.
Approval
For E. coli O157:H7
Ecolicide®
contamination in Pet Food
Intralytix (USA) FDA USA [48]
Ecolicide For E. coli O157:H7
PX™ contamination on animal fur
Arm and
A preharvest antimicrobial
Hammer Animal
E. coli Finalyse® USDA, FSIS USA hide wash used to reduce E. [34]
& Food
coli O157:H7
Production (USA)
Proteon
Feed additive to prevent
Pharmaceuticals BAFACOL™ EFSA Poland [49]
pathogenic E. coli in poultry.
(POL)
Swine Liquid Food Additive
Phagelab (CHI) Undefined Chile [50]
product Eliminates E. coli in Swine
Salmonella Contamination in
SalmoLyse® [51,52]
Pet Food
Intralytix (USA) FDA USA
Salmonella Contamination
PLSV-1™ [44,53]
in Poultry
Proteon
Feed additive to treat the
Pharmaceuticals BAFASAL+G® EFSA Poland [51,54]
digestive tract of poultry
(POL)
Southeast
UniFAHS SalmoGuard FDA Asian Poultry feed additives [52,55]
Salmonella countries
OmniLytics Inc. For Hides of livestock
BacWash™ USDA USA [56]
(USA) surface disinfection
Feed additive for control of
SciPhage (CO) SalmoFree® Undefined Colombia Salmonella infection [57]
in poultry
PhagePharm Improve the breeding
NuoAnSha Approved China [58]
(CHN) environment
Liquid food additive to
Poultry
Phagelab (CHI) Undefined Chile eliminate Salmonella [50]
product
in broilers.
L.monocytogenes ListPhage™ FDA L. monocytogenes in pet food [48]
Intralytix (USA) USA Against Poultry
INT-401™ FDA, FSIS [59]
C. perfringens
C. perfringens Necrotizing enteritis,
PhagePharm
NuoAnSuoQing Approved China diarrhea, intestinal bleeding [58]
(CHN)
caused by C. perfringens
Delmont
Staphage Staphylococcal skin infections
staphylococcus Laboratories FDA USA [47]
Lysate(SPL)® in dogs
(USA)
ACD Pharma Various bacteria in
Yersinia ruckeri CUSTUS® YRS FOT Norwegian [60]
(NOR) aquaculture farms
Decontamination of
PhagePharm
R. anatipestifer JiangYanQing Approved China R.anatipestifer in [58]
(CHN)
aquaculture environments
Weissella Ceti
Weisella ceti SciPhage (CO) Undefined Colombia control weissellosis in trout [61]
Phages
Microorganisms 2022, 10, 1324 7 of 22

Table 2. Cont.

Regulatory
Target Bacteria Company Products Certifications Application Ref.
Approval
CJ CheilJedang
Research Feed additive for poultry
Institute of Biotector® S South Korea and pigs against Salmonella, [35]
Biotechnology Undefined C.perfringens, E. coli.
(KOR)
Food additive prevent
Phagelab (CHI) cattle product Chile infectious diarrhea caused [50]
by E. coli and Salmonella.
Proteon
Fish feed additive against
Pharmaceuticals BAFADOR® EFSA Poland [62]
Aeromonas and Pseudomonas
(POL)

PhagePharm NuoAnQing Improve the breeding


environment [58]
(CHN) YaLiNing Approved China
Varmsphage Infections caused by E. coli
ChangShi [63]
(CHN) and Salmonella
Prevents the common
Poultry Feed
bacterial infections
Variety of Cytophage Additives
Undefined Canada in chickens [64]
bacteria (CAN)
swine bacte- Against the common
riophage bacterial infections in swine
Added to the feed as
aquaPHIX™
a solvent
Fixed-Phage (UK) farmPHIX™ Approved UK Feed additives [37,49]
Topical application of gels
petPHIX™
and creams
Pathway
ProBe-Bac SE for pigs;
Intermediates ProBe-Bac FDA South Korea [65]
ProBe-Bac PE for poulty
(KOR)
LUNIN for poultry diseases
Phagelux (CHN) LUZON Approved China for swine disease [66]
LUMON for cattle disease
Prevention of bacterial
Vetagin® endometritis, abscess and
myositis in dairy cows
MicroMir (RUS) Approved Russia Control of common bacteria [67]
Bronchophage associated with lower
respiratory tract disease
Prevention of bacterial
Phagovet
diseases in broilers

5. Phages Products in Food Health


The use of antibiotics aggravates AMR in livestock and poultry products and the high
morbidity and mortality caused by foodborne pathogens has been a global burden [68].
Contamination caused by foodborne pathogens can be transmitted from production lines
to humans, ultimately threatening human health. Phages are desirable for the biological
control of foodborne pathogens as an effective natural and ecological alternative [69]. There
are also increasing studies on the effectiveness of phages against foodborne pathogens. For
example, Mengzhe demonstrated that phage STP4-A with a wide host range is effective
Microorganisms 2022, 10, 1324 8 of 22

against Salmonella as a food additive [70]. Vikram demonstrated that phage preparation can
effectively reduce the level and prevalence of E. coli O157:H7 in food [71]. As early as 1958,
the U.S. Food and Drug Administration (FDA) recognized phages and their derivatives
as GRAS (generally recognized as safe) through the Food Additives Amendment to the
Federal Food, Drug, and Cosmetic Act [72]. Phages are primarily used in three depart-
ments: primary production, biological preservation, and biological harmlessness in the
food industry to ensure food safety [53]. Phages used in primary food production can
prevent foodborne pathogens from entering the human body through the food chain, which
is an excellent pre-harvest strategy. Livestock and poultry products are contaminated with
pathogens in the production, processing, distribution, and consumption links. The applica-
tion of phage products in postharvest can effectively reduce the presence of pathogens on
carcasses, packaging, and RTE poultry products [68]. The benefit of phages for postharvest
poultry processing is that they do not affect the quality senses and nutritional value of
food [48].
Phage products are currently used with high safety to eliminate pathogens in animal
food (meat products and dairy products) and plant food (fruits and vegetables). The FDA
has granted phage products GRAS approval, allowing them to be used in livestock and
poultry products. The use of phage products in food is also approved by health agencies in
Israel, Canada, China, Switzerland, Australia, New Zealand, and the European Union [53].
Since the FDA approved the first phage product, ListShield™, as a food preservative
in 2006, a significant number of phage products have emerged worldwide to combat
foodborne pathogens [34,73]. As of November 2021, 14 phage products have been used in
food processing, of which 11 have been approved by the FDA, including Intralytix (USA)
and Micreos (Utrecht, Netherlands). Table 3 lists the commercial phage products used
to combat foodborne pathogens in detail. The statistics of approved commercial phage
products against foodborne pathogens revealed that Intralytix (USA) has made remarkable
contributions to the field, with five products for marketing, and has gained Jewish cleansing
and halal certification. Figure 2B reveals that commercial phage products primarily compete
with E. coli, Salmonella, and L. monocytogenes, which seriously threaten human health. It
is worth noting that Campylobacter is the most commonly reported foodborne pathogen,
but there are no commercial Campylobacter phage products. A recent project (C-SNiper)
directed by the Spanish Technology Center (AZTI) developed a prototype phage product
for Campylobacter that is expected to be globally commercialized in 2022 [74].

Table 3. Commercial phage products fighting foodborne pathogens in food.

Phage Regulatory
Target Bacteria Company Certifications Application Ref.
Products Approval
Eliminate E. coli O157:H7
EcoShield Canada; Israel;
Intralytix (USA) contamination prior to grinding [71,75]
PX™ USA
or packaging
E. coli PhageGuard E. coli O157 on beef carcasses,
Micreos (NED) [76]
E™ primals, subs and trimmings.
USA
FINK TEC GmbH Secure Shield Used in beef products, turkey
[48]
(GER) E1 and other foods
FDA
USA, Canada, Food additives for poultry, fish,
Intralytix (USA) SalmoFresh™ [77]
Israel shellfish, fruits and vegetables.
Canada; Israel;
PhageGuard In spray or dipping form for
Micreos (NED) Halal; [78]
S™ poultry, meat.
Salmonella OMRI; SKAL
As an antibacterial processing
Phagelux (CHN) SalmoPro® Canada, China [56]
aid in food.
Arm and Hammer
For Salmonella in
Animal & Food Finalyse™SAL Undefined USA [79]
poultry products.
Production (USA)
Microorganisms 2022, 10, 1324 9 of 22

Table 3. Cont.

ListShield™ Food additives for poultry, fish, [80]


Intralytix (USA) USA shellfish, fruits and vegetables.
Listex™ [81]
L.
monocytogenes Swiss; Israel;
PhageGuard FDA Halal; Canada; In spray or dipping form for
Micreos (NED) [82,83]
Listex™ Kosher poultry, meat.
OMRI; SKAL
Campylobacter Intralytix (USA) Compyshield™ Food additives for raw red meat [84]
Removal of Shigella from meat
Shigella Intralytix (USA) ShigaShield™ USA [53,85]
and vegetables
Brimrose Technology Salmonella, Shigella, E. coli,
EnkoPhagum Approved [53]
Variety of Corporation (USA) Staphylococcus in meat products.
bacteria Against bacteria in the food
Fixed-Phage (UK) safePHIX™ Undefined UK [38]
cold chain

6. Phage Products in Human Health


The application of phages to treat human diseases dates back to the successful injection
of phage preparations in France in 1921 to treat five children with dysentery caused by the
Shigella infection [24]. Belgian researchers published the first paper in the same year on
the successful use of phages to treat furuncles and carbuncles of human skin [9]. Initially,
the French company L’Oréal sold five phage preparations for the treatment of bacterial
infections, Antipiol (Deutsch, Germany) produced Enterofagos, and EliLily (Indianapolis,
IN, USA) first sold “Staphylofel” phage preparations for the treatment of streptococci and E.
coli [86]. D’Herelle and Eliava first used phages to control cholera in India in 1931 and found
no side effects following treatment [87]. During World War II, phages were also applied by
both Soviet and German armies to treat wound infections, with the German army using
Shigella phage preparation “Polyfagin” by Behringwerke Leverkusen to treat and prevent
dysentery in soldiers [88]. In the late 1930s, however, the Committee on Pharmacy and
Chemistry of the American Medical Association stated that the efficacy of phage therapy
was unclear and further research was needed. Together with the discovery of penicillin,
which led to the successful introduction and widespread use of antibiotics, interest in phage
therapy has diminished, with only the Soviet Union and some countries in Eastern Europe
still investigating it [14].
Common infections or minor injuries may be fatal with the increasing threat of AMR
to humans. Researchers found great potential for phage therapy and phage therapies
are increasingly being used for human bacterial diseases. In 2000, clinical human trials
using phage therapy as a potential antibiotic alternative officially began in the United
States, and phase I clinical data was first published in 2009. Clinical trials have revealed
that phage cocktails against E. coli, S. aureus, and P. aeruginosa are safe for the treatment of
wounds [89]. In 2013, the European Commission supported the large multinational phage
therapy multicenter clinical research program “Phagoburn”, which treated 27 patients
infected with P. aeruginosa burn wounds with phage therapy in France, Belgium, and
Switzerland [90]. Despite the intended purpose not being achieved, this is the first time that
three national regulatory agencies reached a consensus about phage cocktails for human
therapy. At present, there are five phage therapy institutions worldwide, which are: Eliava
Phage Therapy Center (Tbilisi, Georgia), Phage Therapy Center (Tbilisi, Georgia), Center
for Innovative Phage Applications and Therapeutics (West Philadelphia, PA, USA), Phage
International (San Ramon, CA, USA), and Phage Therapy Unit (Wrocław, Poland). Eliava
Phage Therapy, founded in 1923, was the first institution to focus on phage therapy and
has marketed phage cocktail products targeting specific pathogenic bacteria to treat human
bacterial infections [91].
It has been confirmed that phage therapy has a lethal impact on a range of bacteria,
which has contributed to an increase in phage therapy research and development for
Microorganisms 2022, 10, 1324 10 of 22

human diseases by multiple institutions around the world. However, no phage products
have been approved for human use in the European Union or the United States. The FDA
has merely opened up the regulatory pathway for phages to provide a green channel for
phage products for clinical use in emergencies. Phage therapies are approved for use in
emergency treatment plans in the European Union, Australia, France, and Belgium [92].
Detailed information on phage products currently approved and in preclinical studies
worldwide is provided in Table 4. Figure 2C reveals that phages in preclinical products are
almost exclusively targeted at MDR bacteria, especially “ESKPAEE” pathogens, including
E. faecium, S. aureus, K. pneumoniae, E. coli, and others. It can treat the infections caused
by these bacteria at different sites, including bone and joint infections (IOA), diabetic foot
ulcers (UPD), and MARS caused by S. aureus [93,94]. It can treat the fibrosis and burn
infections caused by P. aeruginosa [95]. It can treat urinary tract infections and IBD caused
by E.coli and K. pneumonia [96,97]. Among the preclinical phage products, the cocktail
products composed of 4–8 phage mixtures account for 60% of the total.

Table 4. Phage products for human health.

Mono Component
Target Regulatory Route of
Company Product Application Ref.
Bacteria Approval Administration
Intralytix FDA approved Targeting
EcoActive™ oral [98]
(USA) IND, Phase 1/2a adherent-invasive E. coli
Pherecydes
Treating E. coli Urinary
E. coli Pharma PhagUTI Phase I/II Undefined [99]
Tract Infections
(FRA)
Phico
Intravenous Fights diseases caused by
Therapeutics SASPject PT5 Uundefined [100]
injection E. coli
(UK)
Russian
Oral intrarectal, Treatment and
Microgen Bacteriophage Federation
or Intracavitary prevention of diseases [101]
(RUS) P. aeruginosa national standard
injection caused by P. aeruginosa
certification

FDA approved Treatment of respiratory


Armata AP-PA02;
IND, Phase 1b/2 Inhalation tract infections [95]
(USA) AP-PA03
caused by P. aeruginosa,
especially in patients
BiomX (USA) BX004 Preclinical Oral [102]
P. aeruginosa with CF
Phagelux FDA approved Spray and gel for
PGX0100 Transdermal [103]
(CHN) IND, preclinical burn care
Phico
Against P. aeruginosa
Therapeutics SASPject PT3 undefined Undefined [104]
infection
(UK)
Phase I/II clinical
Pherecydes Treatment of acute
trials are
Pharma Pneumo Phage Inhalation P. aeruginosa respiratory [99]
expected to start
(FRA) tract infection
in 2023
Microorganisms 2022, 10, 1324 11 of 22

Table 4. Cont.

Mono Component
Target Regulatory Route of
Company Product Application Ref.
Bacteria Approval Administration
Treatment of
Russian
Suppurative
Microgen Staphylococcal Federation
Inhalation Inflammation and [101]
(RUS) bacteriophage national standard
Intestinal Disorders
certification
Caused by Staphylococci
Treatment of resistant
FDA approved and refractory
Armata AP-SA01; Intravenous
IND, Staphylococcus aureus [93,94]
(USA) AP-SA02 injection
Phase 1b/2 bacteremia and diabetic
foot ulcers
Atopic dermatitis caused
BiomX (USA) BX005 Preclinical stage [102]
by S. aureus
S.aureus lyase, a
S. aureus PL-01-SZ hydrogel formulation for
China NMPA Transdermal
Phagelux the treatment of eczema
(CHN) IND submission [103]
expected in 2022 P.acnes and S.aureus lyase,
PL-06-FC hydrogel for
acne treatment
iNtODEWorld N-Rephasin® Intravenous
Phase II Effective against MRSA [105,106]
(KOR) SAL200 injection
Fights bone and joint
Pherecydes infections (IOA) and
Pharma Phage Cocktail Phase I/II diabetic foot ulcers [99]
(FRA) (UPD) caused by
S.aureus.
Undefined
Engineered phages
Phico deliver genes for
Therapeutics SASPject PT1.2 Phase I antimicrobial proteins [107]
(UK) (SASPs) that rapidly kill
S. aureus
Prevention and
Eliava Bio treatment of
Staphylococcal Georgian
Staphylococcal Preparation Oral or intrarectal postoperative [108]
Bacteriophage Approval
(GEO) wound infections,
Staphylococcal infections
Targeting K. pneumoniae
bacterial strains
K.pneumoniae BiomX (USA) BX003 Phase I Oral [102]
present in the gut of IBD
and PSC patients
Prevention of human
FDA approved
Shigella ShigActive™ Oral diseases caused by [109]
IND,2021
Shigella infection
Intralytix
(USA) Colonization with
antibiotic-resistant
Enterococcus VRELysin™ Undefined Undefined [84]
Enterococci and
associated bacteremia
Against C. difficile
AmpliPhi AmpliPhage-
C difficile Pre-phase 1 Undefined (including highly [104]
(UK) 004
virulent RT027)
Microorganisms 2022, 10, 1324 12 of 22

Table 4. Cont.

Mono Component
Target Regulatory Route of
Company Product Application Ref.
Bacteria Approval Administration
Russian Federation
Streptococcal Oral, topical and Treatment diseases
Streptococcal Microgen(RUS) national standard [101]
bacteriophage intrarectal caused by Streptococcus
certification
Recurrent bacterial
Gardnerella BioNTech
PM-477 Preclinical Undefined vaginosis, synthetic [110]
spp R&D(AUT)
lysosomes
Targeting Fusobacterium
Fusobacterium engineered Intravenous nucleatum bacteria
BiomX (USA) Preclinical [111]
nucleatum phage injection present in the tumor
micro environment.
Combining targets against variety of bacteria
Dosage Regulatory Route of
Company Product Application Ref
Form approval administration
Phage spray Phagyo® spray Topical
Treatment and
Phage tablet Septaphage® table
prophylaxis of bacterial
Biochimpharm Septaphage® Georgian purulent–inflammatory
Phage [112]
Approved infections (multiple
cocktail (GEO) Phagyo® Oral microorganims)
PhageStaph
Phage For bacterial infections,
Travelphag™
capsule indigestion
Salmonella Treatment and
groups A,B,C,D, Oral, intrarectal Prevention of Diseases
bacteriophage Caused by Salmonella
Treatment and prevention
of purulent inflammatory
E.coli-Proteus and enteric diseases,
bacteriophage dysbacteriosis caused by
bacteria Proteus and
enterotoxigenic E.coli
Klebsiella
Specific lysis of K.
purified
pneumoniae, K. odorifera,
polyvalent Russian
Phage Microgen K. rhinosclerosis.
bacteriophage Federation Oral, topical and [101]
cocktail (RUS) national standard intrarectal Treatment and
Intesti- certification prevention of bacillary
bacteriophage
dysentery
Sextaphage ®
Treatment and prevention
Polyvalent
of purulent inflammation
Pyobacterio-
and intestinal diseases
phage
Specific lysis of
Staphylococcus,
Complex
Streptococcus, Enterococcus,
Pyobacteriophage
Proteus, K.pneumoniae,
P.aeruginosa and E. coli.
Dysentery Specific lysis of the
Oral and
polyvalent bacillary dysentery
intrarectal
bacteriophage pathogen
Microorganisms 2022, 10, 1324 13 of 22

Table 4. Cont.

Mono Component
Target Regulatory Route of
Company Product Application Ref.
Bacteria Approval Administration
Pyo-Phage Oral, intrarectal,
or intracavitary
Fersisi-Phage injection
Eliava Bio Treatment and
Phage Intesti-Phage Georgian prevention of bacterial
Preparation Oral or intrarectal [113]
cocktail Approved purulent inflammation
(GEO)
Rectal, or intra- and intestinal infections.
SES-phage
cavitary injection
ENKO-Phage Oral
Bacteriophage
Phage spray Staphylococcus Topical(spray)
spray MediPhag A mix of sterile lysate
Bacteriophage phages against S. aureus
Staphylococcus
liquid MediPhag
Bacteriophage
Treatment and
Salmonella
prevention of multiple
Aziya polyvalent
Phage serotypes of Salmonella
Immuno- MediPhag
cocktail preparat Marketed [114]
Bacteriophage
(UZ) Dysenteric A mix of sterile lysate
Oral
Polyvalent phages against Shigella
MediPhag
GastroFag Fight enteric diseases such
polyvalent as Salmonella, Proteus,
MediPhag S.aureus, P.aeruginosa, E.coli
A white gelatin capsule
Bacteriophage
containing
Phage dysenteric
lyophilizied dried
capsule polyvalent
bacteriophage capsules
“MediPhag”
against Shigella
Against S.aureus,
K.pneumoniae, Lelliottia
MB Pharma amnigena,
phage tablet LYZODOL® Marketed Oral [115]
(CZ) Propionibacterium acnes
causing respiratory
infections.
Contains 72 phage
Phagodent complexes to normalize
oral microflora
Skin gel containing 64
Phagoderm phages to prevent bacterial
infection of the skin.

Phage gel MicroMir Marketed Topical Gel containing 74 phages [76]


(RUS) that prevent bacterial
Phagogyn
diseases of the
reproductive system.
Gel containing 69 phages
that prevent bacterial
Otophagus and suppurative
inflammation of the ear,
nose and throat
Microorganisms 2022, 10, 1324 14 of 22

Table 4. Cont.

Mono Component
Target Regulatory Route of
Company Product Application Ref.
Bacteria Approval Administration
Treatment of pathogenic
factors in purulent
inflammation and
intestinal diseases
Pyofag®
caused by Streptococcus
pyogenes, S.aureus, E.coli,
Phagex (UKR) Marketed Oral and topical P.aeruginosa, Proteus [116]
vulgaris, Proteus mirabilis
Fights intestinal diseases
Intestifag® caused by Shigella,
polyvalent Salmonella, E. coli, P.
bacteriophage aeruginosa, Enterococcus
faecalis, S. aureus
Treatment and
Phico
Intravenous prevention of diseases
Therapeutics SASPject PT4 Undefined [100]
injection caused by K.
(UK)
pneumoniae and E.coli
FDA approved
Phagelux Patches and sprays for
BACTELIDE™ IND, Transdermal [103]
(CHN) pressure ulcers
preclinical
Phage Fixed-Phage Effective against a
cocktail mediPHIX™ Undefined Undefined [38]
(UK) variety of bacteria
Treat Diabetic Foot
Osteomyelitis, Prosthetic
Adaptive
FDA approved Joint Infection, Chronic
Phage Intravenous
PhageBank IND, Recurrent UTI, [117]
Therapeutics injection
Phase 1/2 Ophthalmic Infection,
(USA)
Cystic Fibrosis-related
Lung Infection
Combined with
CRISPR-Cas3 to enhance
Locus
bactericidal efficacy
Biosciences crPhage™ Phase 1b Injection [118]
against various bacterial
(KOR)
diseases such as IBD
and UTI
Balancing
Phage Eliminate bacteria
Serum associated with
Ellis Day Skin Marketed [119]
blemishes
Science (USA) Hydrating
and acne to balance the
Phage
skin microbiome
Serum Transdermal
Phortify A probiotic serum that
PHYLA
Probiotic Marketed targets and neutralizes [120]
(USA)
Serum acne-causing bacteria
SciPhage Fights acne-targeting
AcneFree Undefined [61]
(CO) bacteria

Phage cocktails can increase the host range and avoid targeting a specific pathogen.
In addition, rapid identification of bacterial pathogens is a time-consuming and laborious
process before individualized treatment with phages [121]. Notably, phage cocktails are
still targets for treating bacterial diseases caused by “ESKPAEE” pathogens. Figure 2D
Microorganisms 2022, 10, 1324 15 of 22

reveals that phage cocktail products that have been marketed in Russia and Georgia are also
basically liquid phage cocktails, with only a few gels, capsules, and tablets available. Due to
the effective identification of phages in the reticuloendothelial system, the half-life of phages
in humans is usually relatively short [122]. Figure 2E reveals that the route of administration
has a significant impact on the efficacy of phage absorption into the human body. Currently,
the administration routes of phage products in preclinical studies mainly include oral,
topical, transdermal, inhalation, and intrarectal administration. There are various routes of
administration for phage products, with oral administration accounting for 35% of the total
and remaining the most prevalent, followed by topical and intrarectal administration. Oral
administration is effective in delivering phages to the gastrointestinal tract but it is the least
effective route for systemic penetration. The most effective mode of delivery is an injection,
which may deliver phages to practically all organs and tissues in minutes. Therefore, the
efficacy of phage therapy is determined by the route of administration.
Endolysin and virosome-associated lysozyme (VAL), which are phage-derived
peptidoglycan-degrading enzymes, are also bactericidal. Endolysins are enzymes used
by phages to lyse the bacterial cell wall at the end of the replication cycle, while the VAL
is responsible for the injection of genetic material into infected cells for peptidoglycan
degradation [18,123]. Many studies on the antibacterial effect of endolysin are currently
being implemented in human medicine clinics. Endolysin is also one of the alternatives to
antibiotics. It has the advantages of killing the host quickly, host specificity, preservation of
the normal microbial community, reduction of AMR risk, and efficiency against multidrug-
resistant bacteria and biofilms when compared to antibiotics [124]. The benefits of endolysin
therapy have attracted the attention of researchers and pharmaceutical companies to its
commercial potential and several commercial products based on endolysin have now
been developed. The first human endolysin product developed by Micreos, Staphefekt
SA. 100, specifically for the treatment of chronic S. aureus associated skin diseases, has
been marketed. All three clinical patients had a positive therapeutic effect and did not
develop resistance [125]. Artilysin has developed an Artilysin® product line(Lysando AG,
Regensburg, Germany) that is effective against resistant P. aeruginosa and A. baumannii in
various forms including spray, nebulizer, solution, lyophilization, gel, and coating [126].
Rephasin® SAL200 (Intron Biotechnology, Seongnam, Korea) is now in phase II of human
clinical trials [105,127]. ContraFect has developed a novel direct lysing agent called Amurin
peptide, which is effective against numerous Gram-negative pathogens. The other is
a lysin-based direct lytic agent, containing Exebacase CF301, which is effective against
S. aureus, including MARS, and is the first phage lytic enzyme to enter human clinical
trials in the United States [128,129]. Criteria used for the preclinical analysis of small
molecule antibiotics may be more readily translated into the preclinical assessment of phage
lytic enzymes than phages, so clinical evaluation of phage lytic enzymes is progressing
significantly faster [130].

7. Advantages and Disadvantages of Phage Therapy


Compared to antibiotics, phages are characterized by host specificity, which means
only lysing the host bacterial cell wall without destroying the microbiota [62]. There is a
process of adaptation versus counter-adaptation in the coevolution of phages and bacterial
hosts and the risk of developing resistance is low [40]. For example, coevolutionary phage
training can delay the evolution of phage resistance. Researchers conducted coevolution
experiments using E. coli and untrained or trained phages to assess the potential of phage-
training treatments and found that trained phages were able to inhibit host bacteria for a
longer period of time [131]. The coevolution of phages with host bacteria has also driven
bacteria to evolve a variety of highly specific phage defense mechanisms. For example,
mutations in phage receptors, the R-M system, the DISARM system, the superinfection
exclusions (SIEs) system, the abortive infection (Abi) system, and the adaptive immune
system CRISPR-Cas all make phages resistant [132,133]. Hussain studied the evolutionary
trajectory of resistance in wild-type phages, which showed that the rapid evolution of
Microorganisms 2022, 10, 1324 16 of 22

mobile phage defense elements (PDEs) drove bacterial resistance to phages [134]. Studies
have shown an evolutionary trade-off between phage and antibiotic resistance, with bacteria
sometimes showing increased susceptibility to antibiotics when phage resistance evolves.
Barber studies have demonstrated that efflux pumps play a dual role in antibiotic resistance
and phage sensitivity, and when phage resistance leads to the loss of bacterial capsules,
they will subsequently become sensitive to antibiotics [135]. However, when Burmeister
studied E. coli phages, it was found that bacterial interaction with phages may depend on
efflux pump protein TolC and structural barrier molecule lipopolysaccharide (LPS), and
when these two mutants were constructed, some phage resistance mutations conferred an
increase in antibiotic resistance [136]. Therefore, there are not only synergistic effects but
also antagonistic effects between phages and antibiotics, and their intrinsic mechanisms
of action remain to be further studied. In addition, phages replicate only in the target
bacteria at the site of infection and treatment causes fewer adverse effects and is safer. Oral
phage preparations are generally harmless and researchers have found the presence of
adverse effects associated with phage therapy when assessing animal and clinical phage
therapy safety and toxicity, but with a small probability of events [137]. Finally, phages are
widespread in the environment and provide an inexhaustible resource. It only takes days
to weeks to produce a new natural phage preparation, and if a phage develops resistance,
phages that use other new receptors can also be quickly found. Screening for a new natural
phage preparation takes a few days, and phages using other new receptors can also be
quickly found if the phage develops resistance.
Despite the favorable results of various studies on phage applications, phage therapy
still has certain shortcomings and unknowns. First, there are still some potential risks
associated with the application of phage therapy, which are largely observational with
existing phage therapies or performed in small non-randomized trials, where side effects
may be underestimated. Second, the route of administration, frequency of administration,
dose, phage resistance, pharmacokinetic and pharmacodynamic characteristics of phages,
and the mechanism of phage entry into eukaryotic cells and the immune system need to
continue to be studied in depth [40,138]. Third, legal regulation is a significant obstacle to
the implementation of phage therapy and regulatory authorities classify phages as biologi-
cal substances, which differs from the approval and production of antibiotics, making it
difficult to use phage therapy. European legislators have been advocating for a regulatory
framework specifically targeting individualized phage preparations but they have been
strongly resisted [139]. Fourth, considering phages are natural entities, they entrap pharma-
ceutical companies in intellectual property issues [121]. Fifth, animal prophylactic phage
products do not remove phages immediately after use and may lead to phage mutation
and the cultivation of phage mutants. This problem also needs to be solved by using the
regular rotation of phages and continuous detection, such as antibiotics [35]. Sixth, phages
can transfer bacterial resistance genes and even contain toxic genes, implying that, as much
as possible, the selection of lytic phages ensures that therapeutic phage products must be
deeply purified and must remove endotoxins during processing [140]. Seventh, when the
scope of phage application expands, including antibiotic substitutes, carrier delivery drugs,
vaccines, and phage display technology, the demand for large-scale production of phage
increases. The Phage on Tap (PoT) protocol has been studied for the rapid formulation
of high titer phage formulations and a systematic procedure has also been developed for
the isolation, up-culture, concentration, and purification of phages for pharmaceutical
use [141]. The procedure can combine modified classical techniques, modern membrane
filtration processes, and no organic solvents in 16 to 21 days, producing an average of
23 mL of 1011 PFU/mL phage [142]. Despite the enormous efforts of researchers for phage
technology, there remain challenges for the production and expansion of wild-type phages
for biological control. Finally, doctors and the public at large are unaware of the use of
phages to treat diseases and the public believes that viruses are exclusively harmful to the
human body, not realizing that they may also be beneficial [143].
Microorganisms 2022, 10, 1324 17 of 22

8. Conclusions and Prospects


Antibiotic resistance poses a threat to global health. Russia approved the addition
of phages to the official pharmacopoeia in 2016. The European Pharmacopoeia included
“phage therapeutic active ingredients and pharmaceutical products for human and veteri-
nary use” in 2021. To ensure its safety and effectiveness, pharmaceutical authorities such as
the FDA and EMA require that any modern phage therapy product meet GMP standards,
which poses challenges [144]. According to the statistics, Figure 3C reveals that 20 countries
began to develop phages and had phage products approved for use. According to the
analysis of 123 products in 20 nations, Figure 3A reveals that 53% of the products were
used for human health, and Russia, Georgia, and the United States have rich experience in
phage therapy for human diseases. Figure 3B reveals that the FDA has approved twenty
phage products for animals and food, but only seven investigational new drugs (INDs) for
humans. Except for Russia and Georgia, which have focused on phage therapy for human
diseases and have sold many phage products, phage product research and development
in other nations remains to be further developed. Overall, phage products in the United
States are rapidly developing and the FDA has also approved several products. In the
future, as a novel alternative therapy under the “one health” approach, phage research and
development
Microorganisms willPEER
2022, 10, x FOR continue
REVIEW to focus on making products that are environmentally
15 offriendly,
20

safe, and successful in combating AMR.

Figure 3. Total phage products are distributed and approved. (A) The proportion of phage products
in plants, animals, food, and humans. (B) The number of phage products that have been approved by
Figure 3. Total phage products are distributed and approved. (A) The proportion of phage prod‐
the FDA and are in clinical
ucts in research andfood,
plants, animals, marketed for(B)
and humans. human use.of(C)
The number Worldwide
phage products thatdistribution
have been ap‐ of the
proved by the FDA and are in clinical research and marketed for human use. (C) Worldwide dis‐
number of phage products.
tribution of the number of phage products.

Author Contributions: Y.H. collected data and wrote the first draft. W.W. and Z.Z. contributed to
the data collection of the manuscript. Y.G., A.H. and J.W. made suggestions for revision of the
manuscript. H.H. provides supervision, guidance and financial support. All authors have read
and agreed to the published version of the manuscript.
Microorganisms 2022, 10, 1324 18 of 22

Author Contributions: Y.H. collected data and wrote the first draft. W.W. and Z.Z. contributed to the
data collection of the manuscript. Y.G., A.H. and J.W. made suggestions for revision of the manuscript.
H.H. provides supervision, guidance and financial support. All authors have read and agreed to the
published version of the manuscript.
Funding: This work was funded by grants from National Key Research and Development Program
(2021YFD1800600), National Natural Science Foundation of China (32172914), Fundamental Research
Funds for the Central Universities (2662022DKYJC005).
Institutional Review Board Statement: Not applicable.
Informed Consent Statement: Not applicable.
Data Availability Statement: Not applicable.
Acknowledgments: We thank the editors and peer reviewers for reading this manuscript.
Conflicts of Interest: The authors declare no conflict of interest.

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