Biochemistry Notes

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Biochemistry The cytosol is the water-based fluid

part of the cytoplasm of a cell.


Biochemical Energy production
Ribosomes are the sites where protein
Metabolism- is the sum total of all synthesis.
biochemical reactions that take place
in a living organism. A lysosome is an organelle that contains
hydrolytic enzymes needed for
Catabolism- is all metabolic reactions in cellular rebuilding, repair, and
which large biochemical molecules degradation.
are broken down to smaller ones.
A mitochondrion is an organelle that is
Anabolism- is all metabolic reactions in responsible for the generation of
which small biochemical molecules most of the energy for a cell.
are joined together to form larger
Mitochondria are sausage-shaped
ones.
organelles containing both an outer
Metabolic pathway- is a series of mem brane and a multi folded inner
consecutive biochemical reactions membrane.
used to convert a starting material The invention of high-resolution
into an end product. electron microscopes allowed
There are two types of metabolic researchers to see the interior
structure of the mitochondrion more
pathways:
clearly and led to the discovery, in
- linear 1962, of small spherical knobs
attached to the cristae called ATP
- cyclic
synthase complexes.
o A eukaryotic cell is a cell in Important Nucleotide-containing Compounds in
which the DNA is found in a metabolic pathways
membrane-enclosed nucleus.
• Adenosine Phosphates (ATP, ADP,
o Prokaryotic cells have no and AMP)
nucleus and are found only • Adenosine Monophosphate (AMP)-
in bacteria. one of the nucleotides
present in RNA molecules
The cytoplasm is the water-based
material of a eukaryotic cell that • Adenosine Diphosphate (ADP)
lies between the nucleus and the • Adenosine Triphosphate (ATP)
outer membrane of the cell. differ structurally from
AMP only in the number
The organelle is a minute structure of phosphate group
within the cytoplasm of a cell that present.
carries out a specific cellular Phosphoester bond - phosphate-ribose
function. bond
Phosphoanhydride bond - phosphate-
phosphate bond
- Chemical bond formed when two atoms than the oxidized form, which is
phosphate groups reacts with each consistent with the process of
other and a water molecule is reduction involving hydrogen atom.
produced. Flavin Subunit - The active portion of
Phosphoryl group (PO32- ) -The functional FAD in redox reaction
group derived from a phosphate ion - The portion that undergoes change
when the latter becomes part of when oxidized form (FAD) is
another molecule. - ATP contains converted to the reduced form (FADH
three phosphoryl groups, ADP 2)
contains 2 phosphoryl groups, and Nicotinamide Adenine Dinucleotide (NAD^+,
AMP one phosphoryl groups. NADH)
- Have coenzyme functions in
Other Nitrogen containing basis metabolic redox pathways
associated with nucleotides are also - Have B- Vitamin as a structural
present in triphosphate form: component
• Uridine Triphosphate - involved in - Have an oxidized and reduce form
carbohydrate metabolism.
• Guanosine Triphosphate- Participate in The notation for the oxidized form is the NAD+
protein and carbohydrate metabolism and the reduced form is the NADH
• Cytidine Triphosphate- Involved in lipid - Can be presented structurally by
metabolism using a three sub-unit and six sib-unit
formulation.
Flavin Adenine Dinucleotide (FAD, FADH2)
Flavin Adenine Dinucleotide (FAD) - A Three sub-unit block diagram
coenzyme required in numerous
metabolic reactions. - Can be
visualized as containing either three
subunits or six subunits. Six sub-unit block diagram
FAD from three subunit viewpoint.

FAD from six subunit viewpoint


Coenzyme A (CoA- SH) -Another important
coenzyme in metabolic enzyme. A
derivative of the Vitamin B
pantothenic acid
Ribitol – reduced form of ribose
Two forms of FAD
1. Oxidized form
2. Reduced form

-The notation FAD denotes the


oxidized form
-The notation FADH2 denotes the
reduced form contains two or more H

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