2022 20231009BP3671

FACULTY OF LIFE SCIENCES
SYLLABUS FOR THE BATCH FROM

THE YEAR 2022 TO YEAR 2024
M.Sc. (BOTANY) (For Colleges)

(Semester: I - IV)
Examinations: 2022-24
GURU NANAK DEV UNIVERSITY

AMRITSAR
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Nobody is allowed to print it in any form.
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(ii) Subject to change in the syllabi at any time.

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1
M.Sc. Botany (For Colleges) (Semester System)
SYLLABUS FOR THE BATCH FROM THE YEAR 2022 TO YEAR 2024
Scheme of Course
Semester I
Sr. No. Course No. Course Title Hours/ Max. Marks

Week
1 BOT C512 Fungi and Plant Pathology 3 50
2 BOT C514 Plant Physiology 3 50
3 BOT C516 Theoretical Biology 3 50
4 BOT C517 Genetics and Evolution 3 50
5 BOT C518 Phycology 3 50
6 BOT C519 Computer Applications and 3 50
Bioinformatics
5 BOT C554 Botany Practicals I (Based on BOT C512, 6.5 75
BOT C514 and BOT C516)
6 BOT C555 Botany Practicals II (Based on BOT 6.5 75
C517, BOT C518 and BOT C519)
Total 31 450
Semester II
Sr. No. Course No. Course Title Hours / Max. Marks

Week
1 BOT C522 Diversity and Biology of Gymnosperms 3 50
2 BOT C523 General Microbiology 3 50
3 BOT C524 Cell Biology 3 50
4 BOT C527 Bryology 3 50
5 BOT C528 Pteridology 3 50
6 BOT C529 Ecological Modelling and Forest Ecology 3 50
8 BOT C565 Botany Practicals II (Based on BOT 6.5 75
C527, BOT C528 and BOT C529)
9 BOT C563 On Job Training or Assignment Satisfactory/
Not Satisfactory
Total 31 450
@ In addition to the courses listed above, a candidate may be required to study additional
optional course/s in Botany or other disciplines, as may be approved by the Board of Control.
The marks obtained in such papers will be entered in the transcript but will not add to total
marks obtained by the candidate for the award of the degree.
2
Semester III
Sr. No. Course No. Course Title Hours/ Max.

Week Marks
1 BOT C612 Developmental Botany 3 50
2 BOT C613 Plant Molecular Biology 3 50
3 BOT C614 Plant Breeding and IPR 3 50
4 BOT C615 Plant Biochemistry 3 50
5 BOT C616 Applied Botany 3 50
6 BOT C617 Plant Morphogenesis 3 50
7 BOT C655 Botany Practicals I (Based on BOT S612, 6.5 50
BOT S613 and BOT C614)
8 BOT C656 Botany Practicals II (Based on BOT S615, 6.5 75
BOT S616 and BOT C617)
9 BOTC653 Assignment Satisfactory/
Not Satisfactory
10 BOT C654 Seminar 1 25
Total 32 450
@ In addition to the courses listed above, a candidate may be required to study additional optional course/s in
Botany or other disciplines, as may be approved by the Board of Control. The marks obtained in such papers
will be entered in the transcript but will not add to total marks obtained by the candidate for the award of the
degree.
3
Semester IV
Sr. No. Course No. Course Title Hours/ Max. Marks

Week
1 BOT C621 Plant Anatomy 3 50
2 BOT C622 Structure and Metabolism of Plant 3 50
Hormones
3 BOT C623 Plant Tissue Culture and Biotechnology 3 50
4 BOT C624 Analytical Techniques 3 50
5 BOT C626 Diversity and Biology of Angiosperms 3 50
6 Optional Paper * 3 50
8 BOT C665 Botany Practicals II (Based on BOT C624 4.5 75
and BOT C626)
9 BOT C663 Field Study Satisfactory/ Not Satisfactory
10 BOT C664 Research Techniques 3 Satisfactory/ Not
satisfactory
Total 32 450
* List of Optional Papers
1. BOT C724 - Hazardous Chemicals
2. BOT C725 - Immunology
@ In addition to the courses listed above, a candidate may be required to study additional optional course/s in
Botany or other disciplines, as may be approved by the Board of Control. The marks obtained in such papers will
be entered in the transcript but will not add to total marks obtained by the candidate for the award of the degree.
4
M.Sc. Botany (For Colleges) (Semester-I)
BOT C512 – Fungi and Plant Pathology

Lectures: 3 Credit Hours/Week
Time : 3 Hrs. Max. Marks: 50
Instructions for the Paper Setters:
Eight questions of equal marks (Specified in the syllabus) are to be set, two in each of the four
Sections (A-D). Questions may be subdivided into parts (not exceeding four). Candidates are
required to attempt five questions, selecting at least one question from each Section. The fifth
question may be attempted from any Section.
SECTION-A
History, classification, study of structure, development, reproduction, life history of the following
GYMNOMYCOTA (i) Acrasiomycetes - a general account (ii) Protosteliomycetes - a general account
(iii) Myxomycetes: Stemonitis
MASTIGOMYCOTA Haplomastigomycotina
(i) Chytridiomycetes: Chytriomyces, Allomyces
(ii) Hyphochytridiomycetes: Rhizidiomyces
(iii) Plasmodiophromycetes: Plasmodiophora
Diplomastigomycotina (i) Oomycetes: Lagenidium, Saprolegnia, and Achlya
AMASTIGOMYCOTA Zygomycotina (i) Zygomycetes : Entomophthora and Pilobolus
(ii) Trichomycetes – a general account
History, classification, study of structure, development, reproduction, life history of the following
AMASTIGOMYCOTA Ascomycotina (Ascomycetes) (i) Hemiascomycetidae: Protomyces and
Taphrina (ii) Piectomycetidae : Talaromyces (iii) Pyrenomycetidae: Melanospora and Nectria. (iv)
Discomycetidae : Monilinia and Morchella (v) Laboulbeniomycetidae : Laboulbenia (vi)
Loculoascomycetidae : Mycospharella and Venturia
SECTION-B
Basidiomycotina (Basidiomycetes) (i) Teliomycetidae : Melampsora, Ustilago and Tilletia (ii)

Holobasidiomycetidae-I (Hymenomycetes) : Polyporus and Exobasidium. (iii) Holobasidiomycetidae-II
(Gasteromycetes) : Scleroderma, Clavatia and Nidularia.
(Deuteromycetes)
(i) Hyphomycetidae : Stibella Rhizoctonia and Sclerotium
(ii) Blastomycetidae: Sporobolomyces and Cryptococcus
Principles and methods for the prevention and control for plant diseases, modelling and disease
forecasting, plant quarantine, defence mechanisms of plants against pathogens, plant disease clinics,
prediction of disease control decisions.
Symptomatology, identification, etiology and control measures of the following plant disease:
SECTION-C
Fungal Diseases: Potato wart, damping-off diseases, blight of colocasis, peach leaf curl, apple scab. Wilt
of cotton and arhar, anthracnose disease of chillies, Late blight of potato, Early blight of potato, stem rust
of wheat, loose smut of wheat, karnal bunt of rice, powdery mildew of bajra, white rust of crucifers,
tikka disease of groundnut.
Bacterial Diseases: Bacterial leaf blight of rice, ring rot of potato, citrus canker, brown rot of potato,
tundu disease of wheat.
Viral Diseases: Papaya leaf curl, leaf curl of tomato and bunchy top of banana
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SECTION-D
Sex hormones in fungi, heterothallism in Basidiomycetes, hyterokaryosis, parasexual cycle
Mycorrhizae in agriculture and plant growth, Biological control and concept of mycoherbicides.
Important contributions of the following mycologists/microbiologists: E.J.Butler, K.C. Mehta, B.B.
Mundkur, Robert Koch, Alexander Flemming, S.A. Waksman, W.M. Stanley and Christian Gram.
Important mycological and plant pathological journals and institutes.
Books Recommended
1. Alexopoulos CJ, Mims CW, and Blackwell M. (1996). Introductory Mycology. 4 th edition. John and
Sons, Inc.
2. Dube HC. (1981). An Introduction to Fungi. Vikas Publishing House Pvt. Ltd. 3.
3. Sumbali G. (2005). The Fungi. 1st edition. Narosa Publishing India House.
4. Vashishta BR and Sinha AK. (2008). Fungi. S. Chand and Company Ltd.
5. Webster J. (1980). Introduction to Fungi. 2nd edition. Cambridge University Press.
Suggested Practical’s
1. Principles & working of instruments in the Mycology & Plant Pathology laboratory.
2. Characterization of disease symptoms and identification of pathogenic organisms (stem rust of
wheat, damping off disease, white rust of crucifers, early and late blight of potato, loose smut of
wheat, wilt of cotton, tikka disease of groundnut, citrus canker, leaf curl of papya, yellow vein
mosaic of bhindi, red rot of sugarcane, anthrocnose of chillies.)
3. To study type genus Eurotium, Mucor, Peziza, Geastrum, Nidularia, Lycoperdon, Morchella,
Agaricus.
4. Comparative biochemical and physiological observations of healthy and infected leaves.
5. Ocular micrometry of spores of pathogenic fungi.
6. Obsevations on rhizosphere of infected plants.
7. Modelling for disease forecasting.
8. Studies on different defense mechanism adopted by plants against pathogenic attack.
9. Measurement of radial growth of fungi in petri plates.
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BOT C514 – Plant Physiology


SECTION-A
Properties of water, soil-plant, water relations kinetic theory, chemical and potential gradients, Raolt’s
Laws, rate of diffusion free energy of water, atmospheric H2O, measurement of water potential
components.
Energy metabolism (concept of the energy), thermodynamic principles in biology, energy rich bonds,
weak interactions, coupled reactions and oxidative phosphorylations, group transfers, biological energy
transducers, bioenergetics.
SECTION-B
Signal transduction: Overview, receptors and G-proteins, phospholipid signalling, role of cyclic
nucleotides, calcium-calmodulin cascade, diversity in protein kinases and phosphatases, specific
signalling mechanisms e.g. two-component sensor-regulator system in bacteria and plants, sucrose-
sensing mechanism.
SECTION-C
Nitrogen Metabolism:Introduction, Overview of nitrogen in the biosphere and in plants, Overview of
nitrogen fixation, Enzymology of nitrogen fixation, symbiotic nitrogen fixation, Ammonia uptake and
transport, Overview of nitrate uptake and reduction, Nitrate reduction, Interaction between nitrate
assimilation and carbon metabolism.
SECTION-D
Sulphur Metabolism: Overview of sulphate assimilation, Sulphur chemistry and function, Sulphur uptake
and transport, the reductive sulphate assimilation pathway, Synthesis and function of glutathione and its
derivatives.
Books Recommended
1. Buchanan, B.B., Gruissem, W. and Jones,R.L.(2002). Biochemistry and Molecular Biology of Plants,
American Society of Plant Physiologists, Maryland.
2. Dennis,D.T., Turpin, D.H., Lefebvre,D.D. and Layzell,D.B.(eds) (1997). Plant Metabolism (second
edition). longman, Essex.
3. Galston, A.W. (1989). Life Processes in Plants. Scientific American Library, SpringerVerlag, New
York.
4. Hooykaas, P.J.J., Hall, M.A. and Libbenga,K.R. (eds) (1999). Biochemistry and Molecular Biology
of Plant Hormones. Elsevier, Amsterdam.
5. Hopkins,W.G.(2013). Introduction to Plant Physiology. John Wiley & Sons, Inc., New York.
6. Lodish,H., Berk,A., Zipursky, S.I., Matsudaira, P., Baltimore, D. and Darnell,J. (2000). Molecular
Cell Biology(fourth edition). W.H.Freeman and Company, New York.
7. Moore, T.C.(1989). Biochemitry and Physiology of Plant Hormones(second edition). Springer-
Verlag, New York.
8. Nobel, P.S.(1999). Physiochemical and Environmental Plant Physiology (2nd Ed.). Academic Press,
San Diego.
9. Salisbury, F.B. and Ross,C.W. (1992). Plant Physiology (4th edition). Wadsworth Publishing Co.,
California.
10. Singhal, G.S., Renger, G., Sopory, S.K., Irrgang, K.D. and Govindjee (1999). Concepts in
Photobiology: Photosynthesis and Photomorphogenesis. Narosa Publishing House, New Delhi.
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1. Study on principles of pH metry, spectroscopy

2. Studies on preparation of various concentrations of solutions
3. Permeability observations on plasma membrane using different concentrations of organic solvents.
4. Effect of temperature on permeability of plasma membrane.
5. Preparation of standard curve of protein (e.g.BSA) and determine the protein content in unknown
samples
6. Estimation of activity of enzyme catalase
7. Estimation the activity of enzyme glutathione reductase.
8. Determination of osmotic potential of vacuolar sap by plasmolytic method.
9. Determination of the water potential of any tuber by constant weight method.
10. Determination of the water potential of any tuber by Chardakov’s dye method.
11. Separation of amino acids in a mixture by paper chromatography and their identification by
comparison with standards.
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BOT C516 – Theoretical Biology

Theory Lectures : 3 Credit Hours/Week
SECTION-A
1. Linear Function: y=ax and y=ax+b
2. Power Function: y=axn , quadratic equation.
3. Periodic Function: Sine and cosine, trigonometric relations.
SECTION-B
4. Exponential and Logarithmic Functions: Exponential function y=aqx , logarithmic
x
function.d/dx(e ), d/dx(ln x), integral of 1/x.
5. Integration: Integrals, definite integral, rules of integration, second derivative.
SECTION-C
6. Probability: Concept of probability, permutations and combinations, normal distribution.
7. Differentiation and Integration: Limit Growth rates, instantaneous rate of change, differentiation of
some important functions, product rule and quotient rule of differentiation, chain rule of
differentiation.
SECTION-D
8. Statistics: Mean, standard deviation, standard error, ‘t’ test, chi square test.
9. One way ANOVA, simple linear regression and correlation.
Books Recommended
1. Barbour, M.G., Burk, J.H. and Pitts, W.D. (1987). Terrestrial Plan Ecology. Benjamin/Cummings
Publication Company, California. 3rd edition
3. Batschelet, E. (1971). Introduction to Mathematics for Life Scientists. Springer-Verlag, Berlin. 2nd
edition
4. Begon, M. Harper, J.L. and Townsend, C.R. (1996). Ecology, Blackwell Science, Cambridge. 6th
edition
5. Brady,N.C. (1990). The Nature and Properties of Soils. Macmillan.
6. Chapman, J.L. and Reiss, M.J. (1988). Ecology: Principles and Applications. Cambridge
University Press, Cambridge.
7. De, A.K. (1990). Environmental Chemistry. Wiley Eastern Pvt. Ltd., New Delhi. 6th edition
8. Heywood, V.H. and Watson, R.T. (1995). Global Biodiversity Assessment. Cambridge University
Press, Cambridge.
9. Hill, M.K. (1997). Understanding Environmental Pollution. Cambridge University
Press,Cambridge.
10. Kormondy, E.J. (1996). Concepts of Ecology. Prentice Hall of India Pvt. Ltd., New Delhi.
11. Krebs, C.J. (1989 Ecological Methodology. Harper and Row, New York, USA.)
12. Koromody, E.J. (1981). Concepts of Ecology. Prentice Hall of India Pvt. Ltd., New Delhi. 3rd
edition
13. Ludwig, J and Reynolds, J.F. (1988). Statistical Ecology. John Wiley & Sons, New York.
9
BOT C517 – Genetics and Evolution


SECTION-A
Fine Structure of Gene: Classical versus molecular concept of the gene, the cis-trans complementation
for functional allelism, limitation of cis-trans test, fine structure of phage T4 II Locus; fine structures of
gene and “Complex loci” in eukaryotes, genes within genes in phage X124, over-lapping genes; concept
of split gene; pseudogenes, nucleotide sequences.
Genetic Material: - Properties and replication, proof that the genetic information is stored in DNA, the
watson-crick model, the double helix, alternate forms of double helix, DNA replication, initiation and
primer problem, complex replication apparatus, rolling circle replication of phage  X124.
SECTION-B
Genetic regulation of cell cycle, homologous chromosomes, polytene and ampbrush

chromosomes.Oncogenes, biochemistry and molecular biology of cancer, genetic disorders, Correlation
between mutagenicity and carcinogenecity.
Mutations: Definition, types, detection in bacteria, Neurospora, maize and Drosphila; molecular basis of
mutations; induced mutations (radiation and chemical mutagenesis), DNA repair mechanisms, DNA
recombination mechanism, mutagen dosage.
SECTION-C
Transposable Genetic Elements: introduction, transposable elements in bacteria (Is elements, Tn 3

family), transposable elements in eukaryotes “Yeast Ty elements”, maize transposons, Drosophila
tranposons, significance of transposable elements.
Somatic Crossing Over: Molecular mechanism of crossing over, gene conversion, ordered and unordered
tetrad analysis, somatic cell hybridization.
Regulation of Gene Expression in Prokaryotes: The Operon model, lac, an inducible operon, trp, a
repressible operon, positive control of the lac operon by CAP and CAMP, complex regulation of ara
operon, attenuation.
SECTION-D
Polyploids: Inheritance pattern in autopolyploids (chromosome and chromatid segregation),
diplodization, role of polyploidy in evolution.
Paleontology and Evolutionary History: The evolutionary time scale; eras, periods and epoch; major
events in the evolutionary time scale; origins of unicellular and multicellular organisms; major groups of
plants and animals; stages in primate evolution including Homo.
Organic evolution: Review of theories of evolution. Hardy-Weinberg law, speciation, modes of
speciation (gradual and abrupt).
10
Books Recommended
1. Berger, M.W. (1976). Genetic, MacMillan Publishing Co. Inc, New York. 2. Gardner, E.J. Simons,
M.J. and Snustad, D.P. (2006). Principles of Genetics, John Wiley & Sons, Inc., New York, Toronto.
2. Klug and Cummings. (1997). Concepts of Genetics, Prentice Hall International Inc.,New Jersey
3. Khush. G.S. (1973). Cytogenetics of Aneuploids, Academic Press, New York.
4. Lewin, B. (1997) Genes VI. Oxford University Press, Oxford.
5. Martz C.P. T. and Yong, W.J. (1988). Cytogenetics. Rekha Printers, New Delhi.
6. MinKoff, E.C. (1983). Evolutionary Biology. Addison -Wesley Publishing Co.,Massachussettes.
7. Schulz -Schaeffer, J., (1980). Cytogenetics of Plants, Animals and Human, SpringerVerlag, New
York.
8. Verma, P.S. and Aggarwal, V.K. (2014). Cell Biology, Genetics, Molecular Biology, Evolution &
Ecology, S.Chand& Co. Ltd., New Delhi.
Suggested Practicals
1. Learning the cytogenetics laboratory-methods of microcopy, fixation, staining and dehydration

2. Meiotic and mitotic studies in Allium cepa
3. Polyploidy induction methods in laboratory organisms-treatment with colchicine
4. Studies on chromosomal aberrations in Allium cepa-using DDT and other pesticides
5. DNA isolation, purity and quantitative estimations.
6. Gel Scoring and data analysis
7. Demonstration of principles of Genetics in Pisum sativum
8. Numerical exercises on pedigree analysis, gene interactions, population genetics, chi-square &
probability
9. Morphological observations in chromosomes- study on polytenic chromosomes of Drosophila.
10. Karyotypic analysis of laboratory organisms-Allium cepa, Vicia faba, Drosophila
11. Studies of human karyotyes and genetic diseases associated.
12. Demonstration of Hardy-Weinberg Law using pea seeds.
11
BOT C518 – Phycology


SECTION-A
Habitat and habit, Comparative account of important system of classification (Fritsch and
Lee).Organization of thallus, structure of algal cell, algal pigments and photosynthetic apparatus. Algal
flagella, nutrition,
SECTION-B
Comparative account of food reserves, reproductive diversity, life history patterns. Chlorophyta
(Volvox, Hydrodictyon,Cladophora, Fritschiella, Oedogonium, Zygnema, Vaucheria). Charophyta
(Chara).
SECTION-C
Phaeophyta (Ectocarpus, Laminaria, Macrocystis, Dictyota, Fucus, Sargassum).Rhodophyta ( Porphyra,
Batrochospermum, Polysiphonia).
SECTION-D
Cyanophyta ( Nostoc, Oscillitoria, Rivularia, Spirulina, Stigonema). Rhythms and bioluminescence in
Dinoflagellates, algal blooms.Origin & evolution of sex in algae, economic importance of algae, bacterial
and fungal pathogens of algae, algae as indicators of water pollution.
Books Recommended
1. Ahluwalia, A.S. (Ed.) (2003). Phycology. Daya Publishing House, New Delhi-110035
2. Bold, H.C. and Wynne, M.J. (1985). Introduction to the Algae.
3. Reproduction, Prentice Hall Inc. Englewood Cliffs, New York.
4. Kumar. H.D. and Singh, H.H. (1971). A Textbook on Algae, East – West Press Pvt. Ltd. New Delhi.
5. Smith, G.M. (1955). Cryptogamic Botany, McGraw Hill Publication.
6. Smith, G.M. (1955). Cryptogamic Botany. Vol. II, Tata McGraw Hill Publishing Co. Ltd. New
Delhi.
7. Trivedi, P.C. (Ed.) (2001). Algal Biotechnology. Pointer Publishers, Jaipur.
8. Fritsch FE (1945). The Structure and Reproduction of Algae. Vol. II. Cambridge Univ. Press.
Cambridge, London.
1. Sectioning and permanent mounting of thalli of various species of Cyanophyta, Chlorophyta,
Charophyta, Phaeophyta, Rhodophyta.
2. Study of diversity of freshwater and sewage water algae.
3. Preparation of synthetic media and cultivation of algae
4. Interpretation of electron micrograph of some algae.
5. Biochemical analysis of pigments present available in algal species
6. Studies on habit and habitat of various algae
7. Estimation of total carbohydrates from fresh water algae.
12
BOTC 519- Computer Applications and Bioinformatics
Theory Lectures: 3 Credit Hours/Week
SECTION-A
Overview of word processing software, creating, saving and opening a new file in MS-Word, various
formatting tools, paragraphs and sections, indents and outdents, creating lists and numbering, types of
lists, Headings, styles, fonts and font size. editing, positioning and viewing texts, finding and replacing
text, inserting page breaks, page numbers, book marks, symbols and dates, Inserting header and footer.
SECTION-B
Worksheet: Introduction to worksheet, worksheet basics, building a worksheet, moving within

worksheet, entering data into worksheet, saving & quitting worksheet, opening and moving around in an
existing worksheet.
Working with Formulae: cell referencing, use of formulae, auto sum, copying formulae, absolute &
relative addressing, working with ranges- creating, editing and selecting ranges,
Previewing & Printing Worksheet: page setting, print titles, adjusting margins, page break, headers and
footers. graphs and charts: using wizards, various charts type, formatting grid lines & legends,
previewing & printing charts.
SECTION-C
Introduction to MS Power Point, presentation overview, power point elements, exploring power point
menu, entering information, presentation creation, opening and saving presentation, slide view, slide
sorter view, notes view, outline view, printing slides, formatting and enhancing text formatting.
Introduction to Bioinformatics, History of Bioinformatics, milestones, objectives and applications of

Bioinformatics. Introduction to Biological Databases, Types of Databases, NCBI data Model: Why
specialized data model is required for biological sequences Literature Databases: PUBMED, PUBMED
Central, NCBI data Model: Why specialized data model is required for biological sequences.
13
SECTION-D
Nucleic acid and protein databases: Gen Bank, EMBL, DDBJ, SWISSPROT,UNIPROT.
Database Retrieval and Deposition Systems: SRS, Entrez, Bankit, Seqin, Webin.
Databases for species identification and classification: GBIF, taxonomy browser at NCBI. Plant
Genome Databases: TAIR, Rice Genome Annotation Project, Maize GDB. Structural Databases: PDB,
NDB.
Database for Searching Homologous Sequences: FASTA, BLAST.
SUGGEESTED PRACTICALS
1) Introduction to MS Word
2) Creating Table in MS Word
3) Introduction to Page Formatting
4) Printing in MS Word
6) Page Layout
7) Creating Slide Presentation in MS PowerPoint
8) Viewing the Slideshow
9) Adding Images in MS PowerPoint
10) Inserting Sound and Videos in MS PowerPoint
11) Introduction to MS Workbook
12) Creating different worksheets in MS Excel
13) Inserting Charts in MS Excel
14) Introduction to various functions in MS Excel
15) To Study& analyse various biological databases-
NCBI: Genbank, EBI:EMBL, ExPasy: Swissprot/Uniprot
16) To retrieve sequences from NCBI/EBI/ExPasy and submit in BLAST/FASTA/CLUSTAL-W
17) To Study& analyse various Plant Genome databases-
TAIR(Arabidopsis thaliana), MAIZEGDB(Maize),TIGR( Rice), Gramene.
Books Recommended
1. Baxevais B.F. and Quellette F. (2004). Bioinformatics A Practical Guide to the Analysis of Genes
and Proteins. Wiley-Interscience.
2. Bourhe P. E. and Weissig H. (2003). Structural Bioinformatics (Methods of Structural Analysis).
Wiley-Liss.
3. Eidhammer I., Jonassen I. and Taylor W. R. (2004). Protein Bioinformatics: An Algorithmic
Approach to Sequence and Structure Analysis. Mathematics.
4. Mount D. W. (2004). Bioinformatics & Genome Analysis. Cold Spring Harbor Laboratory Press.
5. Orengo C.A., Jones D.T. and Thornton J.M. (2003). Bioinformatics: Genes Proteins and Computers.
Bios Scientific Pub.
6. Peter Norton’s (1998). Introduction to computers, Tata McGraw-Hill Publishing Company Limited,
New Delhi
7. Sinha, P.K. (1998). Computer Fundamentals. BPB Publications, New Delhi.
14
M.Sc. Botany (For Colleges) (Semester-II)
BOT C522 – Diversity and Biology of Gymnosperms


SECTION-A
Gymnosperms, the first seed plants, diversity of structure and complexity. Classification of
gymnosperms and their distribution in India and in the globe in time and space. Geological time scale
and important geological formations in India
SECTION-B
Morphology, general account, structure and reproduction of Progymnosperms (aneurophytales,
archeopteridales etc.): Cycadofilicales, Glossopteridales, Pentoxylales, Cordaitales, Cycadeoidales
Cycadales. Ginkgoales, Coniferales, Taxales, Ephedrales, Welwitschiales and Gnetales.
SECTION-C
Evolutionary tendencies in gymnosperm organography and life cycle with particular reference to male
and female sporophylls, cones, ovules, seeds and archegonia.
SECTION-D
Pollination mechanisms, cytology of Gymnosperms, general survey of the cytology of gymnosperms.
Books Recommended
1. Arnold, C.A. (1947) An Introduction to Palaeobotany. McGraw Hill Book Company, New York.
2. Bhatnagar, S.P., and Moitra, A. (1996). Gymnosperms. New age International, Private Limited.
3. Biswas, C., and Johri, B.M. (1997). Gymnosperms. Narosa Publishing House, New Delhi.
4. Brown, H.P. (1989). An Elementary Manual of Indian Tree Technology, Dehradun
5. Chamberlain C.J. (1935) Gymnosperms: Structure and Evolution CBS Publishers and Distributors,
N. Delhi.
6. Coulter, J.M., and Chamberlain, C.J. (1917) Morphology of Gymnosperms (Reprinted) Central Book
Dept. Allahabad.
1. Study of morphology, structure and reproduction in

2. Cycas,Pinus,Cedrus,Ginkgo,Ephedra,Taxus,Podocarpus,Gnetum
3. Study of fossils: Williamsonia
4. Understanding wood anatomy using T.S, T.L.S and R.L.S in Pinus and Cedrus
5. Study of secondary growth in stem and root
15
BOT C523– General Microbiology

SECTION-A
Methods in Microbiology: Basic principles of microscopy, micrometry, staining, sterlization methods;
culture media, pure culture methods. 2. Classification of bacteria,(Bergey’s system) characteristics of
each group, Nutrition of bacteria, nature of virulence, toxins and extracellular enzymes of pathogenetic
bacteria, conjugaton, transformation and transduction.
SECTION-B
Nomenclature and classification of plant viruses, transmission of plant viruses with control measures,
Viroids and origin of viruses, morphology and nature of virus particles, infection and replication with
reference to TMV and bacteriophage, viral disease with special reference to encephalitis, hepatitis, AIDS,
rabies, foot and mouth disease.
SECTION-C
Environmental Microbiology: Sewage (waste water) treatment : Ecological impact of raw sewage on
receiving water, public health impact of raw sewage discharge. Primary, Secondary and tertiary waste
water treatments. Total coliform bacteria analysis, Fecal coliform bacteria analysis in drinking water.
Landfills, composting. Bioremediation: Biodegradative organisms, advantages of bioremediations,
problem associated with bioremediation, methodology of bioremediation. Aeromicrobiology: Important
airborne plant, animal and human pathogens, important airborne toxins, nature of bioaerosols
aeromicrobiological pathways, sampling devices for the collection of bioaerosols.
SECTION-D
Industrial Microbiology: The Microbe: Primary and secondary metabolites, major industrial products:
foods, flavouring agents and food supplement, vitamins and beverages; organic acids; enzymes and
microbial transformation; inhibitors; genetically engineered microorganisms – Human insulin and human
growth hormones and vaccines Control of Microorganisms by Physical and Chemical Means:
Fundamentals of control, physical agents, high temperature, low temperature, desiccation, osmotic
pressure, radiation, surface tension and interfacial tension, filtration, characterisation of an ideal
antimicrobial chemical agent, selection of a chemical agent for practical application, major groups of
antimicrobial agents.
Books Recommended
1. Pelczar MJ, Chan ECS and Krieg NR. (1993). Microbiology. 5th edition. McGraw Hill Book
Company.
2. Stanier RY, Ingraham JL, Wheelis ML, and Painter PR. (2005). General Microbiology. 5th edition.
McMillan.
3. Tortora GJ, Funke BR, and Case CL. (2008). Microbiology: An Introduction. 9 th edition. Pearson
Education.
4. Webster, J. (1980). Introduction to Fungi, 2nd Ed., Cambridge University Press, Cambridege,
London.
5. Willey JM, Sherwood LM, and Woolverton CJ. (2008). Prescott, Harley and Klein’s Microbiology.
7th edition. McGraw Hill Higher Education.
16
Suggested practical’s
1. Acquaintance with working, principle, parts and precautions of most commonly used instruments in a
microbiology lab
2. Calibration of microscope: determination of dimensions of microorganisms
3. Acclimatization with aseptic techniques-sterilisation,preparation and cultivation media for bacteria
4. To prepare temporary and permanent cotton plugs
5. To prepare solid and liquid culture media
6. To culture or cultivate bacteria
7. To stain and study bacteria
8. To measure bacterial cells through ocular micrometry
9. Microscopic examination of milk and curd
10. To isolate micro-organisms from mixed culture and grow a pure culture
11. Isolation of microbes from soil sample by streaking method
12. Isolation of micro organisms from given water sample by serial dilution.
13. Methylene blue reduction test for examining the microbial activity of milk
14. To study radial growth of fungi on nutrient media
15. To determine antibiotic staining of bacterial strain
16. Demonstration of Lambart Beer’s law by colorimeter
17
BOT C524 – Cell Biology

SECTION-A
Levels of Structural Organization: Unicellular, colonial and multicellular forms; levels of organization of
tissues, organs and systems; comparative anatomy. Membrane Structure and Function: Structure of
model membrane, lipid bilayer and membrane protein diffusion, osmosis, ion channels, active transport,
ion pumps, mechanism of sorting and regulation of intracellular transport, electrical properties of
membranes.
SECTION-B
Structural Organization and Function of Intracellular Organelles: Cell wall, nucleus, mitochondria, Golgi
bodies, lysosomes, endoplasmic reticulum, peroxisomes, plastids, vacuoles, chloroplast, structure &
function of cytoskeleton and its role in motility. Organization of Genes and Chromosomes: Operon,
interrupted genes, gene families, structure of chromatin and chromosomes, unique and repetitive DNA,
heterochromatin, euchromatin, transposons
SECTION-C
Cell division and Cell Cycle: Mitosis and meiosis, their regulation, steps in cell cycle, and control of cell
cycle. Microbial Physiology: Growth, yield and characteristics, strategies of cell division, stress response
Cell Signaling: Hormones and their receptors, cell surface receptor, signaling through G- protein coupled
receptors, signal transduction pathways, second messengers, regulation of signaling pathways
SECTION-D
Bacterial and plant two-component signaling systems, bacterial chemotaxis and quorum sensing
Cellular Communication: Regulation of hematopoiesis, general principles of cell communication, cell
adhesion and roles of different adhesion molecules, gap junctions, extracellular matrix, integrins,
neurotransmission and its regulation.
Books Recommended
1. Alberts, B. Bracy, P. Lewis , J. Raff, M. Roberts K and Watson, J. (eds) (1994). Molecular Biology
of the Cell, Garland Publishing , New York.
2. Cooper, G. M. (1997). The cell, A Molecular Approach ASM press, Washington, D.C.
3. Chandra Roy, S and DE Kumar, K. (2001) Cell Biology. New Central Book Agency (P) Ltd.
Kolkata.
4. Darnell, J. Lodish, H. and Baltimore, D. (1990). Molecular Cell Biology, 2nd edition, Freeman, New
York.
5. Derobertis, E. D. P. and Derobertis, E.M.F. (1987). Essentials of Cell and Molecular Biology. Hold
Saunders – Philadelphia.
6. Holtzman, E. and Novikoff, A. B. (1984). Cells and Organelles. Saunder Philadelphia.
7. Hopkins, C. L. (1978). Structure and Functions of Cells . Saunders – Philadelphia.
8. Karp, G. (1984). Cell Biology 4th Edition, McGraw Hill, New York.
9. Karp G. (1999). Cell and Molecular Biology. Concepts and Experiments, 2nd Editon John Wiley and
Sons, Inc. New York, Brisbane, Toronto.
18
10. Loewy, A. G. , Siekevitz, P, Menningee, J. R. , and Allant, J. A. N. (19991). Cell structure and
Functions. An integrated Approach 3rd edition . Saunders College Publishing, Philadelphia, London.
11. Pollard. T.D. and Earnshaw, W.C. (2002) Cell Biology. Saunders, Philadelphia London. New York,
St. Luis Sydney, Toronto.
12. Powar, C. B. (1990). Cell Biology. Himalaya Publishing House, Bombay.
13. Sadava, D. E. (1993). Cell Biology – Organelle, Structure and Fucntions. H. Jones and Bartlett-
Boston.
14. Sheeler, P. and Binachi, D. E. (1983). Cell Biology, John Wiley, New York.
1. Understanding the cytology laboratory- components of compound/electron microscope

2. Examination of electron micrographs of eukaryotic cells with special reference to organelles.
3. Examination of various stages of mitosis and meiosis using appropriate plants material (e.g. onion
root tips, onion flower buds).
4. Calculation of Mitotic and meiotic index from dividing root tip cells and pollen grains.
5. Study on cyclosis in Tradescantia and Hydrilla leaves.
6. Observations on Barr bodies in Squamous epithelium
7. Preparation of Feulgen stained chromosomes in root tip cells
8. Effect of colchicine on chromosome movements during mitosis
9. Use of fluorescent dye to visualise cell components.
19
BOT C527 Bryology

SECTION-A
Habitat and habit and distribution of Bryophytes, origin of bryophytes (including fossil records),
primitive vs advanced/derived characters, economic importance
SECTION-B
Comparative morphological account of gametophytes and sporophytes and life cycle of Marchantiales
(Riccia, Marchantia,Tarigonia,Cyathodium,Lunularia) Sphaeropales (Sphaerocarpus) Calobryales
Jungermanniales (Porella) Metzgeriales (Pellia) Anthocerotales (Anthoceros) Sphagnales (Sphagnum)
Andreaealas (Andrea) Bryales. (Funaria)
SECTION-C
Origin of land habit, Evolution of gametophyte and sporogonium in liverworts and mosses(taking
examples of above mentioned orders)
SECTION-D
Means of spore dispersal, Peristomal teeth in mosses, Palynology of Bryophytes, Method to conserve
Bryophytes at national level. Morphogenetic changes in moss protonema, Characteristic endohydric,
ectohydric, myxohydric bryophytes
Books Recommended
1. Bower, F.O. (1908). The Origin of Land Flora. The MacMillan Press, London.
2. Campbell, D.R. (1985). The Evolution of Land Plants (Embryophyta) Reprinted Central Book Depot,
Allahabad
3. Smith, G.M. (1955). Cryptogamic Botany. Vol. II, Tata McGraw Hill Publishing Co. Ltd.New Delhi.
4. Stewart, W.N. (1983). Palaeobotany and Evolution of Plants. Cambridge University Press,London.
5. Taylor, T.N. (1981). Palaeobotany. An Introduction to Fossil Plant Biology, McGraw Hill Book
Company, New York.
6. Kumar, S.S.(1984) An Approach towards Phylogenetic Classification of Mosses, Jour. Hattori Bot.
Lab. Nichinan, Japan.
7. Goffinet, B. and Shaw, A.J.(2000) Bryophyte Biology, Cambridge University Press, Cambridge, pp.
476
1. Morphological, reproductive and anatomical study of representative members of the bryophytes
studied in theory using cleared whole mount preparation and sectioning (Riccia, Marchantia, Porella,
Pellia, Funaria, Sphagnum, Polytrichum).
2. Studies on habit and natural habitat of bryophytes.
3. Study of Peristomal teeth(WM)
4. Study of Scales, rhizoids(WM)
5. Study of dehiscence pattern of sporogonium
20
BOTC 528Pteridology


SECTION-A
Origin of land floras,differentiation of organs in vascular plants – telome and enation theories,
significance and short comings. Monophyletic vs polyphyletic origin of pteridophytes, pteridophytic life
cycle with Reference to alternation of generations, homologous and the antithetic theories of the origin of
the sporophyte.
SECTION-B
General characters and classification of pteridophytes, occurrence, comparative organography,
systematics, reproduction and types of life cycle in: Psilophytales,(psilophytum) Rhyniales,(Rhynia)
Psilotales, (Psilotum). Lycopodiales, (lycopodium,) Selleginallales(Selleginella)
SECTION-C
Equisetales (Equisetum) Ophioglossales, (Ophioglossum) Marattiales, (Marrattia)
Filicales,(Pteris,Dryopteris) Marseliales (Marsilea) Salviniales.(Salvinia,Azolla). Evolutionary trends in
pteridophytes, prothallial evolution, organization and evolution of sorus in ferns.,
SECTION-D
Apomictic life cycle, apogamy, apospory, heterospory and seed habit.Spore structure, pattern of spore
germination in ferns, Role of polyploidy and hybridization in speciation in ferns, Utility of fern for
phytoremidiation.
Books Recommended
1. Bower F.O. (1928). The Ferns, Vols. I – III. Cambridge University Press, Cambridge.
2. Parihar, N.S. (1992). The Biology and Morphology of Pteridophytes, Central Book
3. Rashid, A. (1991). An Introduction to Pteridophytes. Vikas Publishing House Pvt. Ltd. Distributors,
Allahabad.
4. Sinnott, E.W. (1960). Plant Morphogenesis. McGraw Hill Book Company Inc. New York, Toronto,
London.
5. Sporne, K.R. (1962). Morphology of Pteridophytes, BI Publications, New Delhi.
6. Stewart, W.N. (1983). Palaeobotany and Evolution of Plants. Cambridge University Press,London.
7. Taylor, T.N. (1981). Palaeobotany. An Introduction to Fossil Plant Biology, McGraw Hill Book
Company, New York.
8. Sporne, K.R.(1982) The morphology of Pteridophytes, B.I., Publications, Bombay, Delhi, Madras.
1. Morphological, reproductive and anatomical study of representative members of the pteridophytes
studied in theory using cleared whole mount preparation and sectioning (Selaginella, Lycopodium,
Equisetum, Pteris, Dryopteris, Marselia, Salvinia)
2. Studies on habit and natural habitat of pteridophytes
3. Study of spore morphology
4. Study of spore germination on Knop’s medium
21
BOT C529 – Ecological Modelling and Forest Ecology


SECTION-A
Exponential Population Growth: Differential equations, finite rate of increase, intrinsic rate of natural
increase, stable age distribution, matrix model for population growth. Logistic Population Growth:
Differential model for population growth in limited environment. Interaction Between Two Species:
Competition – Differential equations, Leslie-Gower Model, Lotka-Volterra model for predator – prey
interaction, Leslie model, simple epidemics
SECTION-B
Association Analysis and Community Classification: Chisquare, Cole’s measures and point correlation
coefficient for association,continuum concept. Species Diversity: Species area relationships, species
abundance relationships – information measures of diversity. Brillouin’s measure, Shannon-Weaver
measure, Simpson’s measure. Extinction and formation of single populations, McArthur – Wilson theory
of biogeography
SECTION-C
Production and Energy Flow: Production in animal populations, efficiency, measurement of ingestion.
measurement of production in plants, litter decomposition. Forest types, climatic region of India,
Central, characters and distribution of different forest type of India, Salient features of Indian forest act
1972, different methods employed for conservation of forest, Social and urban forest
SECTION-D
Environmental Law & Policy: Constitutional provisions, Water (prevention and control of pollution) Act,
1974, Air (prevention and control of pollution) Act, 1981, Environment Protection Act, 1986, Forest
(Conservation) Act, 1980, Wildlife (Protection) Act, 1972, the concept of biosphere reserves,
International environmental perspectives
Books Recommended
1. Barbour, M.G., Burk, J.H. and Pitts, W.D. (1987). Terrestrial Plan Ecology, Benjamin/Cummings
Publication Company, California.
2. Batschelet, E. (1971). Introduction to Mathematics for Life Scientists. Springer-Verlag, Berlin.
3. Begon,M. Harper, J.L. and Townsend, C.R. (1996). Ecology, Blackwell Science, Cambridge.
4. Brady,N.C. (1990). The Nature and Properties of Soils. Macmillan.
5. Chapman, J.L. and Reiss, M.J. (1988). Ecology: Principles and Applications, Cambridge University
Press, Cambridge.
6. De, A.K. (1990). Environmental Chemistry. Wiley Eastern Pvt. Ltd., New Delhi.
7. Heywood, V.H. and Watson, R.T. (1995). Global Biodiversity Assessment, Cambridge University
Press, Cambridge.
8. Hill, M.K. (1997). Understanding Environmental Pollution. Cambridge University Press, Cambridge.
9. Kormondy, E.J. (1996). Concepts of Ecology. Prentice Hall of India Pvt. Ltd., New Delhi.
10. Krebs, C.J.(1989 Ecological Methodology. Harper and Row, New York, USA.)
11. Koromody, E.J. (1981). Concepts of Ecology. Prentice Hall of India Pvt. Ltd., New Delhi.
12. Ludwig, J and Reynolds, J.F. (1988). Statistical Ecology. John Wiley & Sons, New York.
22
13. Magurran, A.E. (1988). Ecological Diversity and its Measurement. Chapman & Hall, London.
14. Mason, C.F. (1991). Biology of Freshwater Pollution, Longman
15. Misra, R.(1968). Ecology Work Book. Oxford & IBH, New Delhi.
16. Moldan, B. and Billharz, S. (1997). Sustainability Indicators. John Wiley & Sons, New York.
17. Moore, P.W. and Chapman, S.B. (1986). Methods in Plant Ecology. Blackwell Scientific
Publications, Cambridge.
18. Odum, E.P. (1971). Fundamentals of Ecology, Saunders , Philadelphia
19. Odum, E.P. (1983). Basic Ecology. Saunders , Philadelphia.
20. Pielou, E.C. (1984). The Interpretation of Ecological Data, Wiley, New York.
21. Poole, R.W. (1974). An Introduction to Quantitative Ecology. McGraw Hill Book Co., New York.
22. Smith, R.L. (1996). Ecology and Field Biology. Harper Collins, New York
23. Forest Ecology (3rd Edition) by James P. Kimmins Publisher Benjamin Cummings (2003)
24. Introduction to remote sensing (5th Edition,2011) by Jmes B. Compbell and Randolph H. Loynne,
Publisher The Guilford Press.
1. To determine minimum size and number of quadrats required for reliable estimate of biomass in
grassland.
2. To find out association between grassland species using chi square test
3. To analyse plant communities using Bra-Curtis ordination method.
4. To determine soil moisture content, porosity, bulk density of different soil samples collected from
different locations.
5. To study chlorophyll content of SO2 fumigated and unfumigated plant leaves.
6. To determine Na, K concentration of water sample using flame photometer.
7. To determine water holding capacity of different soil samples.
8. To determine percent organic C and organic matter in different soil samples
9. To estimate chlorophyll content in SO2fumigated and unfumigated plant leaves.
10. To estimate rate of CO2 evolution from different soil using soda lime or alkali absorption method
11. To determine sulphate content of water samples
12. To determine O2 content of water sample.
23
M.Sc. Botany (For Colleges) (Semester-III)
BOT C612 – Developmental Botany

Eight questions of equal marks (Specified in the syllabus) are to be set, two in each of the four Sections
(A-D). Questions may be subdivided into parts (not exceeding four). Candidates are required to attempt
five questions, selecting at least one question from each Section. The fifth question may be attempted
from any Section.
SECTION-A
Pollination: Ultrastructural and histochemical details of style and stigma, self andinterspecific
incompatibility, significance of pollen-pistil interaction, role of pollen pistilinteraction, role of pollen
wall proteins and stigma surface proteins, barriers to fertilization,methods of overcoming
incompatibilities, intra-ovarian pollination, in vitro pollination.
SECTION-B
Fertilization: Heterospermy, differential behaviour of male gametes, discharge andmovement of sperms,
syngamy and triple fusion, post fertilization metabolic and structuralchanges in embryo sac.
Endosperm: Types, ultrastructure, cellularization in nuclear endosperm, endosperm
haustoria, their extension and persistence, function, storage, metabolities, endosperm culture.
SECTION-C
Embryo: Polarization of zygote, embryogenic types963.0258741, histology andorganogenesis of dicot
embryos, organless (undifferentiated) embryos,delayed anddifferentiation of embryo, structure, cytology
and function of suspensor, physiological andmorphogenetical relationship of endosperm and embryo,
embryo culture for rescue of hybridembryo. Polyembryony: Types, genetic and somatic, pollen embryos.
Flower development and organ patterning: Organization of floral organs, ABC model, modification of
floral organs, MADS box, importance. Seed: Growthand Development, Seed Appendages.
SECTION-D
Development of gametophytes and gametes, Meristem Control, Development Control, Role of
embryology and palynology in taxonomy.
Role of Embryology in Plant Breeding: Embryology of hybrids, disfunction of endosperm,
arrested development of embryo.
Books Recommended
1. Bhojwani, S.S. and Bhatnagar, S.P. (1975). The Embryology of Angiosperms.VikasPublishing
House Pvt. Ltd, Delhi.
2. Eames, A.J. (1961) Morphology of the Angiosperms. Tata McGraw Hill Publishing Co.Ltd. Bombay.
3. Maheshwari, P. (1950), An Introduction to the Embryology of Angiosperms. TataMcGraw Hill
Publishing Company Ltd. Bombay – New Delhi.
4. Parihar NS (1993) An Introduction to Embryophyta: Vol I – Bryophyta, Vol II –Pteridophyta,
Central Book Dept. Allahabad.
5. Raghavan V (2000) Developmental Biology of Flowering Plants, Springer, Netherlands
6. Raghavan V (1997). Molecular Embryology of Flowering Plants. Cambridge. UniversityPress.
7. Richards AJ (1986) Plant Breeding System, George Allen and Unwin.
8. Shivanna KR (2003) Pollen Biology and Biotechnology, Science Publisher
9. Sinnet, E.W. (1960), Plant Morphogenesis, McGraw Hill Book Company Inc., NewYork.
24
1. Examination of the following with the help of hand sections, dissections and preparedlongitudinal,
transaction of Flowers:Transmitting tissue/canal in the stigma and style,Various types of flowers and
placentation,Special types of flowers with emphasis on vasculature of androecium andgynoecium.
2. Study from permanent preparations, development and structure of anther, pollen,
ovules,megasporogensis, embryo sac, endosperm and embryo.
3. Study of microsporogensis and gametogenesis in sections of anther.
4. Examination of modes of anther dehiscence and collection of pollen grains formicroscopic
examination (maize, grasses, Cannabis sativa, Crotolaria, Tradescentia,Brassica, Petunia,
Solanummelongena).
5. Test for pollen viability using strain and in vitro pollination. Pollen germination usinghanging drops,
sitting drop culture and suspension culture.
6. Estimating percentage and average pollen tube length in vitro.
7. Field study of several types of flowers with different pollinationmechanisms(wind,insects,bird
pollination)
25
BOT C613 – Plant Molecular Biology


from any Section.
SECTION-A
The Law of DNA constancy and C-value paradox, DNA sequencing. Organization of transcriptional
units; mechanism of transcription of prokaryotes and eukaryotes; RNAprocessing (capping
polyadenylation, splicing, introns and exons); ribonucleo–proteins,structure of mRNA.
SECTION-B
Recombinant DNA technology, host cell restriction, restriction endonucleases, DNA
ligases,topoisomerases, gyrases and methylases. Cloning strategies, selection and screening of
recombinant clones, genomic DNA and cDNA libraries, biological and physical containment of
recombinant DNA clones. Agarose gel electrophoresis, Southern/Northern/ Western blotting.
SECTION-C
Cloning vehicles, plasmids, bacteriophages, viruses, cosmids, Ti-plasmid, CaMv plasmid,construction of
plasmid vectors, M13 vectors, their use in cloning and sequencing,expression vectors, lysogeny and lytic
cycles in bacteirophages.
SECTION-D
Genetic colonization of plants by Agrobacterium infection and tumour growth, Ti – plasmids,neoplastic
transformation of plant cells, organization of T-DNA, nucleotide sequences ofT-DNA. PCR, DNA
fingerprinting by RAPDs and RFLPs.
Genomics and proteomics: Genetics and physical mapping of genes, molecular markers for transgenic
plants, artificial chromosomes, high throughput sequencing, genome projects,bioinformatics, functional
genomics, microarrays, protein profiling and its significance.
Books Recommended
1. Becker, W.M., Kleinsmith, L.J., Hardin. J. and Bertoni, G. P. (2009). The World of the Cell.VII
Edition. Pearson Benjamin Cummings Publishing, San Francisco.
2. De Robertis, E.D.P. and De Robertis, E.M.F. (2006).Cell and Molecular Biology. VIII Edition.
Lippincott Williams and Wilkins, Philadelphia.
3. Hackett PB, Fuchs JA & Messing JW. 1988. An Introduction to Recombinant DNATechnology -
Basic Experiments in Gene Manipulation. 2nd Ed. Benjamin Publ. Co.
4. Karp, G. (2010). Cell and Molecular Biology: Concepts and Experiments. VI Edition.John Wiley &
Sons.Inc.
5. Sambrook J &Russel D. 2001. Molecular Cloning - a Laboratory Manual. 3rd Ed. Cold Spring
Harbor Lab. Press.
6. Singh BD. 2005. Biotechnology, Expanding Horizons.Kalyani Publishers, Delhi
7. Watson, J. D., Baker T.A., Bell, S. P., Gann, A., Levine, M., and Losick, R., (2008)
8. Molecular Biology of the Gene (VI Edition.). Cold Spring Harbour Lab. Press, Pearson Pub.
26
1. Identification of the parts of bright- field microscope and demonstration of its use and care.
2. Perform basic microbiological techniques such as sterile plating and isolation of single colonies
3. Isolation of DNA from biological samples
4. Characterization of isolated DNA using agarose gel electrophoresis
5. Graph and analyze agarose gel data
6. Genetic transformation of bacteria
7. Screening and selection of transformants
8. Demonstration of PCR technique
9. Spectrophotometric estimation of DNA
10. Demonstration of DNA sequencing technique
27
BOT C614 – Plant Breeding and IPR


from any Section.
SECTION-A
Primary and secondary centres of diversity, utilization of wild plants in crop improvement, introduction
and domestication as methods of plant breeding.
Types and introduction, vegetative sexual and apomictic, their effects on generating and fixing genotypic
variation, male sterility and self incompatibility mechanisms.
SECTION-B
Breeding systems of crop species; systems of mating in sexually reproducing species and their genetic
consequences. Breeding methods for self and cross pollinated crops;pureline and mass selection,
recurrent selection and clonal selection.
Hybridization in self and cross pollinated crops. Inbreeding depression and hybrid vigor,genetic and
physiological basis of heterosis, hybrid varieties, synthetic and compositevarieties.
SECTION-C
Breeding for disease resistance, classification of resistance, responses of the host topathogens, variability
systems of pathogenic fungi, breeding disease resistant varieties;multiline varieties.
Heritability, genetic advance, correlation of characters, path analysis, multiplecomparison test,
discriminant function and cluster analysis.
SECTION-D
Mutations, aneuploidy and polyploidy as methods of plant improvement, interspecificand intergeneric
hybrids, role of genetic engineering.
Intellectual Property Rights: (IPR/TRIPS), International Intellectual Property System;Plant Variety
Protection; the regular patent systems, trade secrecy, biosafety; laws andconventions related to
intellectual property rights.
Books Recommended
1. Agrawal, R.L. (1998). Fundamentals of Plant Breeding and Hybrid Seed Production Oxford and IBM
Publ. Co. Pvt. Ltd., New Delhi.
2. Allard, R. W. (1981), Principles of Plant Breeding. John Wiley & Sons, N. York.
3. Anonymous (1997). National Gene Bank: Indian Heritage on Plant Genetic Resources(Booklet).
National Bureau of Plant Genetic Resources, New Delhi.
4. Bhandari, M.M. (1974). Practicals in Plant Breeding.A Manual cum practical record.Oxford and IBH
Publ. Co. New Delhi.
5. Chopra, F.L. (Ed.) (2001). Plant Breeding: Theory and Practice. (Reprint 1994). Oxfordand IBH
Publ. Co. Pvt. Ltd., New Delhi.
6. Gupta SK. 2005. Practical Plant Breeding.Agribios
7. Poehlman, J.M. and Sleper, D.A. (1995). Breeding Field Crops (4th Edition) Panima Publishing
Corporation, New Delhi.
8. Raghuvanshi, R.K., Chauhan, A.K.S and Sidhigui, B.A. (1995). Practical Excercises in Cytology,
Genetics, Plant Breeding and Biostatistics (1st Edition). CBS Publishers and Distributors, New
Delhi.
28
9. Roy Darbeshwar(2000). Plant Breeding - Analysis and Exploitation of Variation.Narosa Publishing
Hourse, New Delhi.
10. Sharma A.K. and Sharma A. (1999).Plant Breeding. Lecture Notes on Patents November 1999).
Technology Information, Forecasting and Assessment Council(TIFAC), Department of Science and
Technology(DST), Technology Bhavan, New Mehrouli Road, New Delhi.
11. Sharma, J.R. (1994). Principles and Practice of Plant Breeding, Tata McGraw Hill Publ.Comp. Ltd.,
New Delhi.
12. Singh, B.D. (2005), Plant Breeding - Principles and Methods, Kalyani Publishers,Ludhiana.
13. Singh BD. 2006. Plant Breeding.Kalyani.
14. Singh S & Pawar IS. 2006. Genetic Bases and Methods of Plant Breeding
15. Stoskopf N.C., Tames D.T. and Chrisie B.R. (1993). Plant Breeding -Theory and Practice. West view
Press, Boulder
16. Sundararaj, D.D. and Thulsidas G. (1993). Botany of Field Crops (2nd Edition),MacMillan India
Ltd., New Delhi.
17. Vijendra Das L.D (1998). Plant Breeding.New Age International Publishers, New Delhi.
1. Floral biology in self and cross pollinated species,

2. Selfing and crossing techniques.
3. Numerical exercises on probability and biostatistics
4. Maintenance of experimental records;
5. Learning techniques in hybrid seed production
6. To study Breeders kit.
7. Studies on centres of origin of various useful crops
8. To study Vegetative Propagation in –Potato , Onion bulb. Sugarcane, Ginger.
9. To perform exploration for determination of male sterility.
10. To perform Field exploration for determination of Dichogamy, Heterostyly and Dioecy.
11. To estimate Pollen viability in Zea mays and Hibiscus.
29
BOT C615 – Plant Biochemistry


from any Section.
SECTION-A
Cellular Chemistry: Covalent and noncovalent interactions, hydrogen bond,electrostatic interactions,
hydrophobic interactions, Van der Walls forces and theirsignificance, structure and properties of water
and its biological significance, pH and itssignificance, pH scale, Handerson-Haselbach equation, buffers
(inorganic and organic)and their importance, ATP-the energy currency, phosphorylation /
dephosphorylation ofproteins.
SECTION-B
Metabolism of Carbohydrates: Overview of intermediary metabolism, carbohydratesand lipids of
physiologic significance, glycolysis and oxidation of pyruvate, citric acidcycle, catabolism of acetyl-
CoA, metabolism of glycogen, gluconeogenesis and controlof the blood glucose, pentsephosphate
pathway and other pathways of hexosemetabolism like uronic acid fructose metabolism pathways.
SECTION-C
Lipid Metabolism: Biosynthesis of fatty acids, oxidation of fatty acids, ketogenesis,metabolism of fatty
acids, ketogenesis, metabolism of acylglycerols and sphingolipids,lipid transport and storage, cholesterol,
synthesis, transport and excretion, integration ofmetabolism and provision of tissue fuels.
SECTION-D
Enzymology: Introduction to enzymology, history of enzymes, nomenclature and classification.
Specificity of enzymes: group specificity, absolute specificity,stereochemical specificity. Mechanism of
enzyme catalysis: Activation energy, Nature ofactive sites, enzyme-substrate complex, induced fit
hypothesis, strain and distortiontheory.
Enzyme Kinetics: Michaelis-Menton Equation, Lineweaver-Burk plot. Regulation of enzyme activity
and concentration: Brief account of enzyme induction and repression,covalent modification, isoenzymes
and allosteric enzymes
Books Recommended
1. Buchanan, B.B., Gruissem, W., and Jones, R.L. (2002). Biochemistry and Molecular Biology of
Plants.American Society of Plant Physiologists, Maryland.
2. Dennis, D.T., Turpin, D.H., Lefebvre, D.D., and Layzell, D.B. (eds) (1997). Plant Metabolism.
Longman, Essex.
3. Dryer, R.L. and Lata, G.F. (1989). Experimental Biochemistry, Oxford University Press,New York.
4. Goldsby, R.A. Kindt, T.J., Oxborne B.A., Kuby, J. (2003). Immunology.W.H. Freemen & Company,
NewYork.
5. Murray, R.K., Grammer, D.K., Mayes, P.A. and Rodwell V.W. (1990). Harper’s Biochemistry.
Prentice Hall International Inc., London.
6. Nelson, D.L. and Cox, M.M. (2000). Lehninger’s Principles of Biochemistry. Worth Publishers, New
York.
7. Stanley, J. (2002). Essentials of Immunology and Serology. Delmar Thomson Learning,USA.
8. Tryer, L. (1995). Biochemistry W.H. Freeman & Co., New York.
30
9. Westhoff, P. (1998). Molecular Plant Development: From Gene to Plant. Oxford University Press,
Oxford
10. Wilson, K. and Goulding, K.H. (Eds.) 1986. A Biologists Guide to Principles and Techniques of
Practical Biochemistry, Edward Arnold, London.
11. Zubay G. (1993). Biochemistry. WCB Publishers, IOWA.
1. Preparation of the solutions of different concentrations.Preparation of the inorganic and organic

buffers of different conc. and pH.
2. Preparation of the standard curve of protein and determine the protein content in unknown samples
by Lowry’s method.
3. Estimation of the protein content in given plant sample by Bradford’s method
4. Estimation of the protein content in given plant sample by Biuret’s method
5. Estimation of the carbohydrates in given plant sample Anthrone’s reagent.
6. Estimation of the carbohydrates in given plant sample Dubois’s method
7. Estimation of the activity of enzyme catalase
8. Estimation of the activity of enzyme peroxidase.
9. Preparation of the standard curve of proline and determine the proline content in unknown samples
by Bates’s method.
10. SDS-PAGE for soluble proteins extracted from the given plant material and comparison of their
profile by staining with Coomassie brilliant blue.
31
BOT C616 – Applied Botany


from any Section.
SECTION-A
Food Plants: History and nature of food plants, major and minor cereals, legumes and pulses,
vegetables, fruits and nuts, vegetable oils and fats. Extraction of sugar from sugarcane. Flow diagram of
the process with a critical study of the steps involved, problems faced by the sugar industry in India. Bye-
products of sugar industry, distillation ofalcohol and other products with special reference to distilleries
in Punjab. Food adjuncts:Spices condiments and other flavouring agents, beverages, fumitory and
masticatory materials; functional foods.
SECTION-B
Forest Products: Wood & Oak, gums and resins, rubber,oils.Physical characteristics ofIndian woods,
methods of seasoning and chemical treatment of specialized use, fireproofing of the wood. Industrial
manufacturing of packing material and plywood and theclassifications of plywoods according to their
use. Some important commercial woods:Dalbergia spp., Shorearobusta, Tectonagrandis,
Cedrusdeodara, Bamboo-the ‘greengold’ of India.
Essential oil yielding plants of India, their use in perfumary.
SECTION-C
Industrial Plant Products: Fibre yielding plants, essential oils, fatty oil and waxes,tanning and dyeing
materials, rubber and other latex yielding products, gums and resins,sugars, starches and other cellulose
products. Manufacturing of paper and board from rawplant material.Manufacturing of crude and high
quality paper, recycled paper; soils; bio fuel producing plants.
Fibres: Classification of fibres, physical and chemical processes involved in themanufacuring of fibres
from different types of fibre yielding plants.
SECTION-D
The Rubber Plants of India, Extraction of Raw Rubber and its Chemical Processing forthe Manufacturing
of Finished Rubber.Sources of gums and resins and their classifications according to their chemical
nature.Extraction of the raw resin and down the line processing for terpentine and other products.Sources
of natural dyes in India and their extraction methods, merits and limitations of plant based dyes.
Books Recommended
1. Ambasta S P (1994). The Useful Plants of India.(3rd Ed.). Publications & Information Directorate,
New Delhi.
2. Brown H P (1989). An Elementary Manual on Indian Wood Technology (Reprinted).International
Book Distributors, Dehra Dun, India.
3. Kochhar S. L. (1998). Economic Botany in the Tropics. MacMillan India Limited, Delhi.
4. Pandey B P (1984). Economic Botany (3rd Ed.). S. Chand & Company Ltd., New Delhi.
5. Shankar Gopal Joshi (2000). Medicinal Plants. Oxford & IBH Publishing Co. Pvt. Ltd., New Delhi.
6. Trotter H (1982). The Common Commercial Timbers of India and Their Uses. The Controller of
Publications, Delhi.
7. Wickens GE (2004) Economic Botany: Principles and Practices, Springer, ISBN 978-0-7923-6781-9.
32
To study economic importance, distribution, centres of origin of following specimens:
1. Study of morphology and microchemical tests for stored food material for cereals: Wheat
(Triticumaestivum), Rice (Oryza sativa) , Maize (Zea mays)
2. Study of morphology and microscopic study of fibres: Cotton (Gossypiumsp, Jute (Corchoruscapsularis),
Flax (Linumusitatissimum) Sugar yielding plant: Sugarcane (Saccharumofficinarum)
3. Study of morphology of oil yielding plants:Groundnut(Arachis hypogea), Mustard (Brassicasp), Coconut
(Cocosnucifera),Castor(Ricinuscommunis),Soyabean(Glycine max)and performing tests for oil.
4. Study of morphology and alkaloid present in spices:Ginger(Zingiberofficinale),Turmeric(Curcuma
longa), Coriander (Coriandrumsativum), Clove (Eugenia aromaticum), Black Pepper (Pipernigrum),
Cinnamon (Cinnamomumzeylanicum)
5. Study of morphology and medicinal value for medicinal plants: Amla (Emblicaofficinalis),
Bahera(Terminaliabelerica),Harhar(Terminaliachibula),Sarpagandha(Rauwolfiserpentine,Ashwagandha(
Withaniasomnifera),Liquorice(Glycyrrhizaglabra),PoppyPapaversomniferum),Arjuna(Terminaliaarjuna)
6. Study of morphology and nutrition value for pulses:Green Gram(Phaseolusaureus),Black
Gram(Phaseolusmungo),Pigeon Pea(Cajanascajan),Kidney Bean(Phaseolus vulgaris)
7. Study of morphology of plants producing fruitsCitrus(Citrus sp), Apple(Maluspumila), Mango
(Mangiferaindica), Banana(Musasapientum),Pineapple(Ananascomosus), Grapevine (Vitissp)
8. Vegetables:Potato (Solanumtuberosum), Radish (Rapahnussativus), Turnip (Brassica rapa)
9. Study of morphology of Beverages:Tea (Theasinensis), Coffee(Coffeaarabica) and knowledge of
processing method.
33
BOT C617 – Plant Morphogenesis


from any Section.
SECTION-A
Correlation: Physiological and genetic correlations.
Polarity: Polarity as expressed in external and internal structures, polarity in isolated cells,
polarity in plasmodia and coenocytes, physiological manifestations of polarity,developmental patterns.
SECTION-B
Symmetry: Inorganic and organic symmetries, radial symmetry bilateral symmetry,dorsiventral
symmetry, development of symmetry.
Differentiation: Growth and differentiation, differentiation as expressed in structure,external and
internal differentiation, differentiation during ontogeny, differentiation inrelation to environment,
physiological differentiation, differentiation without growth.
SECTION-C
Regeneration: Regeneration in lower plants, regeneration in higher plants, reconstitution,restoration,
reproductive regeneration.
Tissue Mixtures: Stock – scion interrelations, chimeras, somatic mutations.
SECTION-D
Abnormal Growth: Abnormal development of organs, production of new types of organized structures,
amorphous structures.
Morphogenetic Factors: Introduction to factors-light, water temperature, physicalfactors,genetic factors
and chemical factors in general.
Books Recommended
1. Ainsworth C (2006) Flowering and its Manipulation, Annual Plant Reviews, Vol. 20.Blackwell
Publishing, Oxford, U.K. 2. Brown TA. (2002) Genomes, BIOS ScientificPublishers Ltd, Oxford,
UK.
2. Bhojwani, S.S. and Bhatnagar, S.P. (1975). The Embryology of Angiosperms.Vikas Publishing
House Pvt. Ltd, Delhi.
3. Eames, A.J. (1961) Morphology of the Angiosperms. Tata McGraw Hill Publishing Co. Ltd.
Bombay.
4. Maheshwari, P. (1950), An Introduction to the Embryology of Angiosperms.
5. Sinnet, E.W. (1960), Plant Morphogenesis, McGraw Hill Book Company Inc., New York.
6. Tata McGraw Hill Publishing Company Ltd. Bombay – New Delhi.
1. Emasculation, bagging, hand pollination to study pollen germination, seed set and fruit development.
2. Study of cleistogamous flowers and their adaptations.
3. Study of nuclear and cellular endosperm through dissection and staining.
4. Isolation of zygotic globular, heart shaped, torpedo stage and mature embryos from suitable see
5. Study of seed dormancy and methods to break dormancy
6. Study the primitive and advanced characters of plants in angiosperms
7. Study various methods of asexual reproduction and vegetative reproduction
8. Study effects light, gravity, humidty temperature on plants
9. To study effect of bending on plant morphogenesis.
34
M.Sc. Botany (For Colleges) (Semester-IV)
BOT C621 – Plant Anatomy


from any Section.
SECTION-A
The Shoot and Root System: Primary structure and basic vasculature, the root-stem transition,
secondary growth in stems and roots , the origin of cambium and its activity,anamalous secondary
growth, polycyclic vasculature, secondary meristems, origin andfunction , the role of pericycle,
phellogen., phellem, phelloderm, distribution of sclerenchyma in leaves, stem and roots.
Nodal Anatomy: Types of nodes in dicots and monocots, the node-internode transition,formation of leaf
and branch traces.
SECTION-B
Histology of Wood : Growth rings, types and ultrastructure of tracheids , vessels andwood rays ,
longitudinal parenchyma and its arrangement , grain and texture , knots,formation of resin cavities and
tyloses, anatomy and chemistry of lignification , physicaland anatomical features of common hard and
soft woods of India , importance of densityand weight in commercial utilization of woods.
SECTION-C
Floral Anatomy: The anatomy of floral axis and the whorls, the leaf origin of carpel,evidences from
anatomy of essential and accessory whorls.
Fruit and Seed Anatomy: Gross and ultrastructural surface features of the fruits andseeds, role
intaxonomy, internal anatomy of dicot and monocot seeds, organ and cellularanatomy of typical monocot
and dicot seeds.
SECTION-D
Laticifers and Lenticels: Types and distribution , anatomy in relation to physiologicalroles,
Functional Anatomy: Anatomy of leaf in relation to photosynthesis and transpiration,modification of
the root stem and leaf anatomy in relation to habit and habitat withspecial reference to aquatics , nitrogen
fixers, xerophytes parasites and mycorhizas
Books Recommended
1. Carlquist S (2001). Comparative Wood Anatomy, Springer-Verlag, Germany.
2. Cutler DF (1978). Applied Plant Anatomy, Longman, United Kindom
3. Cutter EG (1978) Plant Anatomy, Part I & II, Edward Arnold, United Kingdom.
4. Dickinson WC (2000). Integrative Plant Anatomy, Harcourt Academic Press, USA.
5. Nair MNB (1998). Wood Anatomy and Major Uses of Wood, Faculty of Forestry,
6. University of Putra Malaysia, Malaysia.
35
1. Study of apical meristems with the help of dissections, whole mount preparations, sectionsand
permanent slides.
2. Study of xylem and phloem elements using maceration, staining, light and electronmicrographs
(xerophytes, hydrophytes and halophytes).
3. Study of secretory structures (nectaries and laticifers).
4. Study of leguminous roots with different types of nodules.
5. Anatomical studies of young and mature stem of Helianthus.
6. Comparative anatomy of dicot and monocot root, stem and leaf
7. To study anomalous stem behaviour in stem (Mirabilisjalapa, Nycthanthus, Boerhaavia diffusa,
Bignonia, Dracaena.)
8. Study of anatomical features in xerophytes e.g.(leaf of Nerium. stem and leaf of Calotropis,
phyllocladode of Ruscus.)
9. Study of anatomical features in hydrophytes e.g. (Nelumbo petiole, Hydrilla stem and
leaf,Eichhornia petiole, leaf lamina, Typha)
10. To study anatomy of storage roots of e.g. (Raphnus sativa, Beta vulgaris,)
11. To study anatomy of halophytes e.g. (Chenopodium stem)
12. To study permanent tissues slide
36
BOT C622 – Structure and Metabolism of Plant Hormones


from any Section.
SECTION-A
General Features of Plant Hormones, their Analysis, and Quantitation :Discoveryof auxin and other
hormones , characteristics of plant hormones , hormone vs plantgrowth regulator, hormonal responses to
a physiological state, bioassays, hormoneextraction, analysis, and quantitation, determination of hormone
synthetic pathways,regulation of hormone levels (hormonal homeostasis).
Auxins :Structure of auxins, physiological roles of IAA, IAA biosynthesis in higherplants, regulation of
IAA levels (IAA homeostasis), inhibitors of IAA action, othernaturally occuring auxins, synthetic auxins,
structural diversity of auxins.
SECTION-B
Gibberellins: Discovery, structure of gibberellins (GAs) in higher plants, physiologicalroles of GAs in
higher plants, terpenoid pathway, biosynthesis of GAs, regulation of GAlevels in the plant, endogenous
levels, why are there so many GAs? , other substances with GA-like activity.
Cytokinins :Discovery , biological functions and bioassays , structure of cytokinins,occurrence of
cytokinins in the cytoplasm and as components of tRNA, relativedistribution of natural cytokinins among
plants, biosynthesis in higher plants , regulation of cytokinin levels, synthetic compounds with cytokinin-
like activity, cytokininantagonists (anticytokinins).
SECTION-C
Brassinosteroids :Discovery , structure and distribution , physiological roles andbioassays, biosynthesis
of brassinolide, synthesis mutants and their wild-type genes,inhibitors of brassinosteroid biosynthesis,
brassinosteroid structure and biological activity regulation of castasterone and brassinolide levels.
Abscissic Acid :Discovery, structure and occurrence in plants and fungi, physiologicalroles of abscisic
acid (ABA), biosynthesis of ABA, carotenoid and/or ABA synthesis,mutants, ABA synthesis inhibitiors,
regulation of ABA levels.
Ethylene: Discovery as a hormone, structure, distribution, and internal concentrations,physiological roles
and bioassays, biosynthesis in higher plants, ethylene synthesismutants, regulation of ethylene levels in
the plant, synthetic compounds that produce ethylene, inhibitors of ethylene action.
SECTION-D
Jasmonates and other Defense-Related Compounds: Introduction, discovery,distribution, and
structure of jasmonates, physiological roles of jasmonates , biosynthesisof jasmonic acid (JA) , JA
synthesis mutants, JA synthesis inhibitors, regulation of endogenous levels of JA.
Microbial Synthesis of Plant Hormones: Microbial associations with plants, infectionby
Agrobacterium, tumor induction by Pseudomonas, microbial genes involved in IAAand CK biosynthesis,
expression of bacterial genes in higher plants, biology of genetictransformation by A. tumefaciens,
production of plant hormones by othermicroorganisms.
37
Books Recommended
1. Buchanan, B.B., Gruissem, W., and Jones, R.L. (2000). Biochemistry and MolecularBiology of
Plants. American Society of Plant Physiologists, Maryland.
2. Dennis, D.T., Turpin, D.H., Lefebvre, D.D., and Layzell, D.B. (eds) (1997). Plant Metabolism.
Longman, Essex.
3. Galston, A.W. (1989). Life Processes in Plants. Scientific American Library, Springer-Verlag, New
York.
4. Hooykaas, P.J.J., Hall, M.A., and Libbenga, K.R. (eds) (1999). Biochemistry and Molecular Biology
of Plant Hormones. Elsevier, Amsterdam.
5. Hopkins, W.G. (1995). Introduction to Plant Physiology. John Wiley & Sons, Inc., NewYork.
6. Lodish, H., Berk, A., Zipursky, S.l., Matsudaira, P., Baltimore, D., and Darnell, J. (2000).
7. Molecular Cell Biology. W.H. Freeman and Company, New York.
1. Study the effect of IAA on morphological parameters such as shoot length, root length,fresh weight
and dry weight of seven days old seedlings.
2. To study the effect of IBA on morphological parameters such as shoot length, root length,fresh
weight and dry weight of seven days old seedlings.
3. Study the effect of Gibberellins on morphological parameters such as shoot length, rootlength, fresh
4. Study the effect of Cytokinin on morphological parameters such as shoot length, rootlength, fresh
5. Estimation of the catalase activity by Aebi’s Method.
6. Study of bioassays of Auxins, Gibberellins, Cytokinin, Ethylene, Absicisic Acid and
Brassinosteroids.
7. Study of antagonistic effect of cytokinin/ethrel on senescence behavior of leaves of different field
crops.
38
BOT C623 – Plant Tissue Culture and Biotechnology


from any Section.
SECTION-A
Cytogenetics and differentiation in cell and tissue culture, plant regeneration from callus,shoot apex
culture and anthers.Micropropagation : Stages, somatic embryogenesis, usefulness, hardening
ofmicropropagated plantlets, advantages and disadvantages, application of the technique incrop
improvement.
SECTION-B
Somaclonal variations and isolation of useful mutants at cellular level, disease resistance,herbicide
resistance and salt tolerance. Production of pathogen free plants through tissueculture. Production of
artificial seeds, their use and application.
SECTION-C
Techniques for the production of transgenic plants: Concept, vectorless transgenosis,gene targeting tools,
crop improvement through transgenics, benefits and risk ofproducing transgenic plants,
commercialization of transgenics.
Cell culture and secondary metabolites like cinnamic acid, shikonin, flavonoids and related compounds
production.
SECTION-D
Cryobiology of plant cell cultures and establishment of plant banks, freeze preservation technology,
factors influencing revival of frozen cells and future prospects. Terminator technology, verminator
technology, apprehensions and challenges.Role of plant tissue culture and biotechnology in agriculture,
medicine and human welfare, prospects of genetic engineering of plants.
Books Recommended
1. Bhojwani, SS and Dantu, PK (2013) Plant Tissue Culture : An introductory text, Springer
Publications.
2. George, F.E., Hall, M., Klerk G. J (2008) Plant propagation by Tissue culture 3rd editionVol I ,
Springer Publications.
3. Gupta P.K., (1990), An Introduction to Biotechnology, Rastogi Publications, Meerut.
4. Kung, Shain – Dow and Arntzen, C.J. (1989). Plant Biotechnology, Butter Worths,London.
5. Old, R.W. and Primrose S.B. (1991). Principles of Gene Manipulation, And Introductionto Genetic
Engineering, Blackwell Scientific Publications, Oxford.
6. Reinert, J. and Bajaj, Y.P.S. (1977). Applied and Fundamental Aspects of Plant Cell,Tissue and
Organ Culture, Springer Verlang, Berlin.
1. To study the functions and operations of various instruments used in PTC like Laminar AirFlow,
Autoclave, incubators, oven, Distillation unit, Weighing balance, pH meter
2. Laboratory design set up of PTC lab Sterilisation techniques
3. Different types of Enclosures used in PTC
4. Preparation of stock solutions and media preparation
5. Selection, preparation and inoculation of explant Synthetic Seed Production
6. Micropropagation and its different steps.Significance of growth hormones in culture
7. Induction of callus from different explants Anther culture and ovary culture
39
BOT C624 – Analytical Techniques


from any Section.
SECTION-A
Principles and application of light, phase contrast, fluorescence scanning and transmission electron
microscopy, cytophotometry and flow cytometry, fixation and staining.
SECTION-B
Principles and applications of gel filteration, ion-exchange and affinity chromatography, thin layer and
gas chromatography, high pressure liquid (HPLC) chromatography, electrophoresisand electrofocussing,
ultra centrifugation (velocity and density gradient).
SECTION-C
Principles of biophysical methods used for analysis of biopolymeric structure, X-ray diffraction
fluorescence UV/CD, visible NMR and ESR spectroscopy, hydrodynamic methods, Atomic absorption
and plasma emission spectroscopy.
SECTION-D
Principles and techniques of nucleic acid: hybridisation and Cot curves; Sequencing of proteins and
nucleic acids; Southern, Northern and South Western blotting techniques;Polymerase chain reaction.
Books Recommended
1. Hackett PB, Fuchs JA & Messing JW. 1988. An Introduction to Recombinant DNA Technology -
Basic Experiments in Gene Manipulation. 2nd Ed. Benjamin Publ. Co.
2. Principles of Electroanalytical Methods. John Wiley and Sons Ltd., Chichester England.
3. Sambrook J & Russel D. 2001. Molecular Cloning - a Laboratory Manual. 3rd Ed. Cold
4. Spring Harbor Lab. Press.Sheehan, D. (2000). Physical Biochemistry : Principles and Applications,
John Wiley andSons Ltd., Chichester, England.
5. Singh BD. 2005. Biotechnology, Expanding Horizons. Kalyani Publishers, Delhi
6. Wilson K. and Walker J. (Eds.) (2012). Practical Biochemistry : Principles and Techniques,
Cambridge University Press, U.K. Riley, T. and Tomilson, C. (1987)
(Experiments based on following techniques):
1. Paper Chromatographgy
2. Thin Layer chromatography
3. Column chromatography
4. Gel Filtration Chromatography
5. Ion Exchange Chromatography
6. Affinity Chromatography
7. Electrophoresis: AGE and SDS-PAGE
8. UV-Vis Chromatography
9. Demonstration of PCR
10. Centrifugation
11. Flourescent Microscopy
40
BOT C626 – Diversity and Biology of Angiosperms


from any Section.
SECTION-A
Historical perspective of plant classification, phenetic versus phylogenetic system; cladistics in
taxonomy, relative merits and demerits of major system of classification, a study of hylogenetic system
of classification after Engler & Prantl, Bessey, Hutchinson, Cronquist,Takhtajan, Dahlgren and Thorne.
SECTION-B
Principles of plant nomenclature; salient features of the International code of Botanical Nomenclature,
working knowledge of botanical latin, important herbaria of the World.Origin of angiosperms; inter-
relationships of dicots and monocots; Phylogeny of ranales,amentiferae, centrospermae, tubifilorae and
halobiales and their treatment in the modernsystems of classification.
SECTION-C
Principles of plant taxonomy, alpha taxonomy vs modern taxonomy; chemotaxonomy, cytotaxonomy,
numerical taxonomy, anatomy, palynology and embryology in relation totaxonomy.
Biosystematic approach to taxonomy, biosystematic categories parameters in biosystematic analysis with
particular examples of taxonomic problems; taxonomic study of agamic, hybridand polyploid complexes;
phylogenetic trees.
SECTION-D
Taxonomic tools: Herbarium; floras; serology; electrophoresis; nucleic acid hybridization;computers and
GIS.
Concepts of pytogeography and its relevance, pytogeographic regions of the world and India,approaches
to phytogeography, principles and practices; factors determining vegetationaltypes, endemism, hotspots
and hottest hotspots, plant explorations, invasions andintroductions, local plant diversity and its socio-
economic importance.
Books Recommended
1. Angiosperm Phylogeny Group (2003) An update of the Angiosperm Phylogeny Group classification
for the orders and families of flowering plants: APG II. Botanical Journal ofthe Linnaean Society
141: 399-436.
2. Cole, A.J. 1969. Numerical Taxonomy,Academic Press, LondonCracknell AP, Hayes L (2009)
Introduction to Remote Sensing. CRC Press, Boca Raton,USA (Special Indian Edition)
3. Crawford DJ (2003) Plant Molecular Systematics. Cambridge University Press,
4. Cambridge, UK.: Brown, H.P. (1989). An Elementary Manual of Indian TreeTechnology, Dehradun
5. Davis P.H. and Heywood, V.H. (1973). Principles of Angiosperms Taxonomy. Robert E.Kreiger
Pub. Co., New York.
6. Judd WS, Campbell CS, Kellogg EA, Stevens PA and Donoghue MJ (2002) Plant Systematics: A
Phylogenetic Approach. Sinauer Associaes, Inc., Massachusetts.
7. Nei M and Kumar S (2000) Molecular Evolution and Phylogenetics. Oxford University Press, New
York.
8. Raven PH, Begr LR, Hassenzahl DM (2008) Environment. 6th edition. John Wiley & Sons, Inc.,
New York.
9. Semple C and Steel MA (2003) Phylogenetics. Oxford University Press, Oxford.
41
Description of specimen from representatives of locally available families. This list is

indicative only
 Ranunculaceae: Ranunculus, Delphinium,

 Brassicaceae: Brasssica, Iberis
 Malvaceae: Hibiscus
 Rutaceae: Murraya, Citrus
 Fabaceae: Lathyrus, Cassia, Acacia, Mimosa
 Rosaceae: Rose, Prunus
 Asteraceae: Helianthus, Ageratum, Sonchus
 Apiaceae: Corriandrum, Foeniculum
 Apocynaceae: Vinca, Nerium, Thevetia
 Asclepiadaceae: Calatropis
 Solanaceae: Petunia, Solanum, Datura
 Euphorbiaceae: Euphorbia, Phyllanthus
 Lamiaceae: Ocimum, Salvia
 Chenopodiaceae: Chenopodium
 Liliaceae: Asparagus, Asphodelus
 Poaceae: Triticum, Avena
.
1. Location of key character and use of keys at family level.
2. Field trips within and around the campus; compilation of field note and preparation ofherbarium
sheets of such plant, wild or cultivated as are abundant.
3. Training in using flora and herbaria for identification of specimen described in the class
4. Comparison of different species of a genus and different genera of family to calculate similarity
coefficients.
42
BOT C724 - Hazardous Chemicals

(Optional Paper)

from any Section.
SECTION-A
Physical Properties of Chemicals: Vapour pressure, vapour density, solubility, octanol/water partition,
coefficient odor.
Toxic Properties :Absorption and excretion detoxification and bioactivation, commonterms used for
toxicology.
Target Organs: Injury to liver, kidney, immune system, respiratory tract, skin, eyes,nervous system,
cardiovascular system, carcinogens and teratogens.
Combustible and Explosive Properties :Flashpoint and autoignition temperature of some chemicals,
explosive properties.
SECTION-B
Aldehydes :Acrolein.
Alkaloids :Nicotine, Morphine, Heroin, LSD, Colchichine.
Amines :Ethylenimine, aniline, benzidine, O-toluidine, Phenylhydrazine.
Azodyes: Acid Yellow 3, Sudan orange, acid red 18, acid blue-9, acid green-3.
Chlorohydrins: Ethylene, chlorohydrin.
Nitriles: Acrylonitrile, acetonitrile.
Cyanides: HCN, Sodium cyanide, potassium cyanide, cyanogen.
Organic Isocyanates :Methyl isocyanate.
SECTION-C
Dioxins: 2,3,7,8 – Tetrachlordibenzo-p-dioxin (TCDD).
Epoxy Compounds: Ethylene dioxide.
Halogenated Hydrocarbons: Chloroform, carbon tetrachloride, dichlorobenzene.
Aromatic Hydrocarbons :Benzene, Xylene.
Polynuclear Aromatics: Benzo -α- pyrene, Benzo - α- anthracene.
Toxic Gases: Arsine, Mustard Gas, Phosgene.
Explosives: Nitroexplosives – Nitroglycerine, dynamite, Nitrocellulose, 2,4,6-Trinitrotoluene, Picric
acid.
SECTION-D
Pesticides: Structure, LD50/ LC50 , health hazards and exposure limit of following pesticides:
Carbamates :Aldicarb, Carbaryl, Carbofuran, Methiocarb.
Organochlorines: Aldrin, Dieldrin, Endrin , Heptachlor, Chloradane, Endsulphan, DDT,Methoxychlor,
Lindane.
Organophosporus Pesticides: Parathion, Dichrolophos, Monocrotophos,Chloropyriphos.
Herbicides: 2,4 D, 2,4, T, Silvex, Atrazine, Metribuzin, Monouron, Diuron, Paraquat,Tribunil, Alchlor
Book Recommeded
1. Patnaik, P. (1999). A Comprehensive Guide to the Hazardous Properties of
ChemicalSubstances.Wiley, New York.
43
BOT C725 - Immunology

(Optional Paper)


from any Section.
SECTION-A
An Overview of the Immune System: Historical perspective, an introduction to theimmune system –
innate and adaptive immunity. Immunodeficiencies : secondary immunodeficiency disorders.
SECTION-B
Antigens and Antigen Recognition: Antigens: prerequisites for immunogenicity, relative
immunogenicity of different types of molecules, Molecules that enhance immunogenicity.Activators of
lympocytes: antigens, superantigens, mitogens. Antigen recognition by cells of innate immunity &
adaptive immunity.
SECTION-C
Antibodies: Gamma globulins; structure, bifunctional property of antibodies, determining
bifunctionality, cross reactivity, Antigen antibody interactions: primary interactions,secondary
interactions. Classification of antibodies: Isotypes, Allotypes, properties & biological functions of
antibody isotypes, IgG,IgE,IgM, IgD, IgA, Monoclonal antibodies
SECTION-D
Cells and Tissues of Immunity: Lymphoid tissues: primary & secondary lymphoid tissues,cells of
innate immunity : phagocytes, antigen presenting cells, natural killer cells,Eosinophils, mast cells and
basophil, B- cells, secondary immune responses.The major histocompatibility complex, antigen process
and antigen presentation, complement.The immune system in Health & Disease, specially AIDS.
Books Recommended
1. Goldsby, R.A. Kindt, T.J., Oxborne B.A., Kuby, J. (2003). Immunology.W.H. Freemen &Company,
NewYork.
2. Stanley, J. (2002). Essentials of Immunology and Serology. Delmar Thomson Learning,USA.

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FACULTY OF LIFE SCIENCES

SYLLABUS FOR THE BATCH FROM

M.Sc. (BOTANY) (For Colleges)

GURU NANAK DEV UNIVERSITY

(ii) Subject to change in the syllabi at any time.

Sr. No. Course No. Course Title Hours/ Max. Marks

Sr. No. Course No. Course Title Hours / Max. Marks

Sr. No. Course No. Course Title Hours/ Max.

Sr. No. Course No. Course Title Hours/ Max. Marks

BOT C512 – Fungi and Plant Pathology

Basidiomycotina (Basidiomycetes) (i) Teliomycetidae : Melampsora, Ustilago and Tilletia (ii)

BOT C514 – Plant Physiology

Instructions for the Paper Setters:

1. Study on principles of pH metry, spectroscopy

BOT C516 – Theoretical Biology

BOT C517 – Genetics and Evolution

Lectures: 3 Credit Hours/Week

Instructions for the Paper Setters:

Genetic regulation of cell cycle, homologous chromosomes, polytene and ampbrush

Transposable Genetic Elements: introduction, transposable elements in bacteria (Is elements, Tn 3

1. Learning the cytogenetics laboratory-methods of microcopy, fixation, staining and dehydration

BOT C518 – Phycology

Instructions for the Paper Setters:

BOTC 519- Computer Applications and Bioinformatics

Theory Lectures: 3 Credit Hours/Week

Time : 3 Hrs. Max. Marks: 50

Instructions for the Paper Setters:

Worksheet: Introduction to worksheet, worksheet basics, building a worksheet, moving within

Introduction to Bioinformatics, History of Bioinformatics, milestones, objectives and applications of

BOT C522 – Diversity and Biology of Gymnosperms

Lectures: 3 Credit Hours/Week

Instructions for the Paper Setters:

1. Study of morphology, structure and reproduction in

BOT C523– General Microbiology

Lectures: 3 Credit Hours/Week

BOT C524 – Cell Biology

Lectures: 3 Credit Hours/Week

1. Understanding the cytology laboratory- components of compound/electron microscope

BOT C527 Bryology

Lectures: 3 Credit Hours/Week

Lectures: 3 Credit Hours/Week

Instructions for the Paper Setters:

BOT C529 – Ecological Modelling and Forest Ecology

Lectures: 3 Credit Hours/Week

Instructions for the Paper Setters:

BOT C612 – Developmental Botany

BOT C613 – Plant Molecular Biology

Instructions for the Paper Setters:

BOT C614 – Plant Breeding and IPR

Instructions for the Paper Setters:

1. Floral biology in self and cross pollinated species,

BOT C615 – Plant Biochemistry

Instructions for the Paper Setters:

1. Preparation of the solutions of different concentrations.Preparation of the inorganic and organic

BOT C616 – Applied Botany

Lectures: 3 Credit Hours/Week

Instructions for the Paper Setters:

To study economic importance, distribution, centres of origin of following specimens:

BOT C617 – Plant Morphogenesis