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Expressed Sequence Tags (Ests)

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Human genome project

o The scientific project which deal with the study of base


sequences of DNA molecules of complete set of chromosomes
is called human genome project.
o HGP was closely associated with the rapid development of a
new area in biology called as
o Goals of Human Genome Project

o Identify all the approximately 20,000-25,000 genes in human


DNA.
o Determine the sequences of the 3 billion chemical base pairs
that make up human DNA.
o Store this information in databases;

o Improve tools for data analysis;

o Transfer related technologies to other sectors, such as


industries;
o Address the ethical, legal, and social issues (ELSI) that may
arise from the project.
Methodologies
o To identifying all the genes that expressed as RNA referred to
as Expressed Sequence Tags (ESTs).
o Simply sequencing the whole set of genome that contained all
the coding and non-coding sequence, and later assigning
different regions in the sequence with functions is called
as Sequence Annotation.
o The total DNA from a cell is isolated and converted into random
fragments of relatively smaller sizes and cloned in suitable host
using specialised vectors.
o The cloning resulted into amplification of each piece of DNA
fragment.
o The commonly used vectors are BAC (bacterial artificial
chromosomes), and YAC (yeast artificial chromosomes).
o The fragments were sequenced using automated DNA
sequencers.
o Specialized computer based programmes were developed for
the alignment of the sequences.
o The sequences were subsequently annotated and were
assigned to each chromosome.
o The sequence of chromosome 1 was completed only in May
2006.

Automated DNA sequencer


Salient Features of Human Genome
o The human genome contains 3164.7 million nucleotide bases.

o The average gene consists of 3000 bases with the largest known
human gene being dystrophin at 2.4 million bases.

The largest known human gene- dystrophin


o The total number of genes is estimated at 30,000.
o 9 per cent nucleotide bases are exactly the same in all people.
o The functions are unknown for over 50 per cent of discovered
genes.
o Less than 2 per cent of the genome codes for proteins.
o Repeated sequences make up very large portion of the human
genome.
o Repetitive sequences are stretches of DNA sequences that are
repeated many times.
o Chromosome 1 has most genes (2968), and the Y has the
fewest (231).
o Scientists have identified about 1.4 million locations where single
base DNA differences (SNPs – single nucleotide polymorphism)
occur in humans.

Single nucleotide polymorphism (self-drawn )


Applications of HGP
o All the genes in a genome can be studied together.
o Helps to understand how tens of thousands of genes and
proteins work together in interconnected networks.
o Helps to diagnose and treat genetic diseases.

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