How To Load Machine Learning Data in Python
How To Load Machine Learning Data in Python
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You must be able to load your data before you can start your machine learning project.
The most common format for machine learning data is CSV files. There are a number of ways to load a
CSV file in Python.
In this post you will discover the different ways that you can use to load your machine learning data in
Python.
Kick-start your project with my new book Machine Learning Mastery With Python, including step-by-
step tutorials and the Python source code files for all examples.
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For reference, you can learn a lot about the expectations for CSV files by reviewing the CSV request for
comment titled Common Format and MIME Type for Comma-Separated Values (CSV) Files.
Either way, you should explicitly specify whether or not your CSV file had a file header when loading
your data.
Comments
Does your data have comments?
Comments in a CSV file are indicated by a hash (“#”) at the start of a line.
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If you have comments in your file, depending on the method used to load your data, you may need to
indicate whether or not to expect comments and the character to expect to signify a comment line.
Delimiter
The standard delimiter that separates values in fields is the comma (“,”) character.
Your file could use a different delimiter like tab (“\t”) in which case you must specify it explicitly.
Quotes
Sometimes field values can have spaces. In these CSV files the values are often quoted.
The default quote character is the double quotation marks “\””. Other characters can be used, and you
must specify the quote character used in your file. Start Machine Learning ×
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This means that you can copy and paste it into your project and use it immediately.
If you have any questions about these recipes or suggested improvements, please leave a comment
and I will do my best to answer.
Once loaded, you convert the CSV data to a NumPy array and use it for machine learning.
For example, you can download the Pima Indians dataset into your local directory (download from
here).
All fields are numeric and there is no header line. Running the recipe below will load the CSV file and
convert it to a NumPy array.
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2 import csv
3 import numpy
4 filename = 'pima-indians-diabetes.data.csv'
5 raw_data = open(filename, 'rt')
6 reader = csv.reader(raw_data, delimiter=',', quoting=csv.QUOTE_NONE)
7 x = list(reader)
8 data = numpy.array(x).astype('float')
9 print(data.shape)
The example loads an object that can iterate over each row of the data and can easily be converted into
a NumPy array. Running the example prints the shape of the array.
1 (768, 9)
For more information on the csv.reader() function, see CSV File Reading and Writing in the Python API
documentation.
Running the example will load the file as a numpy.ndarray and print the shape of the data:
1 (768, 9)
This example can be modified to load the same dataset directly from a URL as follows:
Again, running the example produces the same resulting shape of the data.
1 (768, 9)
For more information on the numpy.loadtxt() function see the API documentation (version 1.10 of
numpy).
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This function is very flexible and is perhaps my recommended approach for loading your machine
learning data. The function returns a pandas.DataFrame that you can immediately start summarizing
and plotting.
The example below assumes that the ‘pima-indians-diabetes.data.csv‘ file is in the current working
directory.
Note that in this example we explicitly specify the names of each attribute to the DataFrame. Running
the example displays the shape of the data: Start Machine Learning ×
1 (768, 9) You can master applied Machine Learning
without math or fancy degrees.
We can also modify this example to load CSV data directly from a URL.
Find out how in this free and practical course.
1 # Load CSV using Pandas from URL
2 import pandas
3 Email Address
url = "https://raw.githubusercontent.com/jbrownlee/Datasets/master/pima-indians-diabetes.data
4 names = ['preg', 'plas', 'pres', 'skin', 'test', 'mass', 'pedi', 'age', 'class']
5 data = pandas.read_csv(url, names=names)
6 print(data.shape) START MY EMAIL COURSE
Again, running the example downloads the CSV file, parses it and displays the shape of the loaded
DataFrame.
1 (768, 9)
To learn more about the pandas.read_csv() function you can refer to the API documentation.
Summary
In this post you discovered how to load your machine learning data in Python.
Your action step for this post is to type or copy-and-paste each recipe and get familiar with the different
ways that you can load machine learning data in Python.
Do you have any questions about loading machine learning data in Python or about this post? Ask your
question in the comments and I will do my best to answer it.
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ML704 January 17, 2017 at 7:17 pm #
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Hi!
What is meant here in section Load CSV with Python Standard Library. You can download the Pima
Indians dataset into your local directory.
Where is my local directory?
I tried several ways, but it did not work
REPLY
Jason Brownlee January 18, 2017 at 10:13 am #
It means to download the CSV file to the directory where you are writing Python code. Your
project’s current working directory.
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ML704 January 18, 2017 at 2:56 pm #
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V ABISHEK HEYER KRUPALIN October 21, 2020 at 4:17 pm #
thanks budddy
hi
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how can load video dataset in python?? without tensorflow, keras, …
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Jason Brownlee July 18, 2017 at 8:40 am #
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Priyanshi December 15, 2020 at 3:22 pm #
Is it possible to store the dataset in E drive while my python files are in C drive?
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Jason Brownlee December 16, 2020 at 7:43 am #
REPLY
constantine July 30, 2017 at 4:23 am #
Hello,
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I want to keep from a CSV file only two columns and use these numbers, as x-y points, for a k-means
implementation that I am doing.
Any help?
REPLY
Jason Brownlee July 30, 2017 at 7:52 am #
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Sorry, I don’t have any kmeans tutorials in Python. I may not be the best person to give you
advice. You can master applied Machine Learning
without math or fancy degrees.
Find out how in this free and practical course.
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constantine July 30, 2017 at 7:51 pm #
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I don’t want anything about k-means, I have the code -computations and all- sorted out.
I just want some help with the CSV files. START MY EMAIL COURSE
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Steve August 3, 2017 at 11:54 am #
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Steve August 3, 2017 at 11:55 am #
REPLY
Jason Brownlee August 4, 2017 at 6:47Start
am # Machine Learning
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Jason Brownlee August 4, 2017 at 6:47 am #
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Fawad August 8, 2017 at 6:20 pm #
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Jason Brownlee August 9, 2017 at 6:24 am #
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komal September 5, 2017 at 7:18 pm #
how to load text attribute ? I got error saying could not convert string to float: b’Iris-setosa’
I was just wondering what the best practices are for converting something in a Relational
Database model to an optimal ML format for fields that could be redundant. Ideally the export would be
in CSV, but I know it won’t be as simple as an export every time. Hopefully simple example to illustrate
my question: Say I have a table where I attribute things to an animal. The structure could be set up
similarly to this:
ID, Animal, Color,Continent
1,Zebra,Black,Africa
2,Zebra,White,Africa
With the goal of being able to say “If the color is black and white and lives in Africa, it’s probably a
zebra.” …so each line represents the animal with a single color associated with it, and other fields as
well. Would this type of format be a best practice to feed into the model as is? Or, would it make more
sense to concatenate the colors into one line with a delimiter? In other words, it may not always be a 1:1
relationship, and in cases where the dataset is like that, what’s
Start the best
Machine way of formatting?
Learning
Thanks for your time.
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Jason Brownlee October 10, 2017 at 7:50 am #
Great question. There are no hard rules, generally, I would recommend exploring as many
representations as you can think of and see what works best.
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Hemalatha S November 17, 2017 at 6:52 pm #
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Jason Brownlee November 18, 2017 at 10:14 am #
name:
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gender:
majors:
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Jason Brownlee November 29, 2017 at 8:13 am #
Ouch, looks like you might need to write some custom code to load each “line” or entity.
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Hemalatha S December 1, 2017 at 2:17 am #
can you tell me how to load a csv file and apply feature selection methods?? can you post code
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for grey wolf optimizer algorithm??
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Jason Brownlee December 1, 2017 at 7:40 am #
REPLY
fxdingscxr January 17, 2018 at 4:42 pm #
https://machinelearningmastery.com/load-machine-learning-data-python/ 10/25
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I have loaded the data into numpy array. What is the next thing that i should do to train my
model?
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Jason Brownlee January 18, 2018 at 10:04 am #
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Ajinkya January 30, 2018 at 6:29 pm #
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Bipin February 2, 2018 at 5:11 pm #
Hey Jason,
I have a dataset in csv which has header and all the columns have different datatype,
which one would be better to use in this scenario: loadtxt() or genfromtxt().
Also, is there any major performance difference in these 2 methods?
REPLY
Jason Brownlee February 3, 2018 at 8:34 am #
Use whatever you can, consider benchmarking the approaches with your data if speed is an
issue. Start Machine Learning
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ML Beginer February 15, 2018 at 3:41 pm #
http://archive.ics.uci.edu/ml/machine-learning-databases/breast-cancer-wisconsin/breast-cancer-
wisconsin.data
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ML Beginer February 15, 2018 at 3:45 pm #
1 import urllib
2 import numpy as np
3 url='http://archive.ics.uci.edu/ml/machine-learning-databases/breast-cancer-wisconsi
4 raw_data=urllib.urlopen(url)
5 ds=np.loadtxt(raw_data,delimiter=',')
6 print ds.shape
REPLY
Jason Brownlee February 16, 2018 at 8:31 am #
You might have some “?” values. Convert them to 0 or nan first.
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ro May 8, 2018 at 4:25 am #
Find out how in this free and practical course.
filename = ‘C:\Users\user\Desktop\python.data.csv’
raw_data = open(filename, ‘rt’) Email Address
names = [‘pixle1’, ‘pixle2’, ‘pixle3’, ‘pixle4’, ‘pixle5’, ‘pixle6’, ‘pixle7’, ‘pixle8’, ‘pixle9’, ‘pixle10’, ‘pixle11’,
‘pixle12’, ‘pixle13’, ‘pixle14’, ‘pixle15’, ‘pixle16’, ‘pixle17’, ‘pixle18’, ‘pixle19’, ‘pixle20’, ‘pixle21’, ‘pixle22’,
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‘pixle23’, ‘pixle24’, ‘pixle25’, ‘pixle26’, ‘pixle27’, ‘pixle28’, ‘pixle29’, ‘pixle30’, ‘class’]
data = numpy.loadtxt(raw_data, names= names)
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Jason Brownlee May 8, 2018 at 6:16 am #
Well done!
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AJS June 1, 2018 at 1:22 pm #
I have multiple csv files of varying sizes that I want to use for training my neural network. I have
around 1000 files ranging from about 15000 to 65000 rows of data. After I preprocess some of this data,
one csv may be around 65000 rows by 20 columns array. StartMy
Machine
computerLearning
starts running out of memory
very quickly on just 1 of the 65000 by 20 arrays, so I cannot combine all the 1000 files into one large csv
file. Is there a way using keras to load one of the csv files, have the model learn on that data, then load
the next file, have the file learn on that, and so on? Is there a better way to learn on so much data?
REPLY
Jason Brownlee June 1, 2018 at 2:47 pm #
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Hemant June 17, 2018 at 2:32 pm #
I have multiple 200 CSV files and labels files that contains 200 rows as output. I want to train,
but unable to load the dataset
REPLY
Jason Brownlee June 18, 2018 at 6:39 am #
You may have to write come custom code to load each CSV in turn. E.g. in a loop over the
files in the directory.
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Jason Brownlee July 12, 2018 at 6:29 am #
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Kikio January 17, 2019 at 1:19 pm #
Hello,
I have a dataset which contains numbers like this: 3,6e+12, 2.5e-3…
when reading this dataset as a CSV file, I get the error: “Value error: cannot convert string to float”
REPLY
Jason Brownlee January 17, 2019 at 1:47 pm #
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Kikio January 17, 2019 at 11:54 pm #
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No, there aren’t, and the error says :” cannot covert string to float in 3.6e+12″
thank you
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Jason Brownlee January 18, 2019 at 5:40 am #
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Kikio January 19, 2019 at 11:14 am # Machine Learning ×
I’ll try , You can master applied Machine Learning
thanks without math or fancy degrees.
Find out how in this free and practical course.
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Jason Brownlee January 24, 2019 at 6:41 am #
I recommend loading all data into memory then perhaps concatenate the numpy arrays
(e.g. hstack).
REPLY
Sara January 26, 2019 at 7:11 am #
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If I have a data set with .data file extention how can I deal with it in python?
please help
REPLY
Jason Brownlee January 27, 2019 at 7:36 am #
Perhaps use a text editor to open it and confirm it is in CVS format, then open it in Python
as though it were a CSV file.
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francistien January 27, 2019 at 9:05 am #
import numpy
filename = ‘pima-indians-diabetes.csv’
raw_data = open(filename, ‘rt’)
data = numpy.loadtxt(raw_data, delimiter=”,”)
print(data.shape)
===============
~\Anaconda3\lib\site-packages\numpy\lib\npyio.py in read_data(chunk_size)
1026
1027 # Convert each value according to its column and store
-> 1028 items = [conv(val) for (conv, val) in zip(converters, vals)]
1029
1030 # Then pack it according to the dtype’s nesting
~\Anaconda3\lib\site-packages\numpy\lib\npyio.py in (.0)
1026
1027 # Convert each value according to its column and Start
storeMachine Learning
-> 1028 items = [conv(val) for (conv, val) in zip(converters, vals)]
1029
1030 # Then pack it according to the dtype’s nesting
~\Anaconda3\lib\site-packages\numpy\lib\npyio.py in floatconv(x)
744 if ‘0x’ in x:
745 return float.fromhex(x)
–> 746 return float(x)
747
748 typ = dtype.type
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Jason Brownlee January 28, 2019 at 7:10 am #
I’m sorry to hear that, I have some suggestions for you here:
https://machinelearningmastery.com/faq/single-faq/why-does-the-code-in-the-tutorial-not-work-for-
me
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Jackson April 3, 2019 at 5:52 am #
When I click the “update: download from here” to download the CSV file, it takes me to a white
page with number on the left side which looks to be the data. How do I get / download this data into a
CSV file? Thanks!
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Jason Brownlee April 3, 2019 at 6:50 am #
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Jackson April 3, 2019 at 2:27 pm #
Thank you!
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Oscar April 8, 2019 at 4:43 am #
Hi Jason,
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1/2/2021 How To Load Machine Learning Data in Python
I hope you can help me with the following preprocessed dataset.txt file. How can I load this dataset in
python? It contains a total of 54,256 rows and 28 columns. Can I use pandas?
REPLY
Jason Brownlee April 8, 2019 at 5:59 am #
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Oscar April 8, 2019 at 6:54 am #
I am using the following code after loading the dataset.txt file into memory:
x= np.asarray(dataset)
print (x)
REPLY
Jason Brownlee April 8, 2019 at 1:55 pm #
Try:
print(type(x))
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So my last question (hopefully) is that I have the dataset, the labels and a list of 28 titles
for the columns. I am trying to load them in python so I can split them and create my
training and testing datasets. I am not sure what to do with the titles. Do I need to load
them as well?
hi
i am new .
please help me to convert image dataset to csv.
REPLY
Jason Brownlee May 5, 2019 at 6:27 am #
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Jason Brownlee May 23, 2019 at 6:07 am #
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Akshay Varshney June 23, 2019 at 11:27 pm #
Hi, Jason, the dataset has been removed from the above link and I want to check that because
the whole of your book is based on that dataset only, so please provide us the dataset as it would
become easy for us to understand concepts from your book, please provide the dataset.
Thank You
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Jason Brownlee June 24, 2019 at 6:33 am #
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Jason Brownlee August 31, 2019 at 6:12 am #
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Araz Sami September 6, 2019 at 6:00 am #
Hello,
Thank you so much for all the great Tutorials. I would like to use a multivariate time series dataset and at
first I need to make a similar format as of load_basic_motion data in Python. I have several text files
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each representing one feature and each file has time series Learning
data for each observation. Do you have any
suggestions for preparing the data in the required format?
Thanks!
REPLY
Jason Brownlee September 6, 2019 at 1:54 pm #
Perhaps this tutorial will provide a useful starting point and adapted to your needs:
https://machinelearningmastery.com/how-to-model-human-activity-from-smartphone-data/
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Hello,
i successfully loaded my csv file dataset. Its basically a letter dataset and now i want to train my python
with this loaded dataset so that i can use this to recognise words later can you help me with is ?
thank you
REPLY
Jason Brownlee September 8, 2019 at 5:14 am #
Yes, you can get started with text data in Python here:
https://machinelearningmastery.com/start-here/#nlp
One question here, may I know how can I load my non-csv data (a normal file instead) on spyder pyhton
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without converting to csv file dataset?
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Jason Brownlee October 7, 2019 at 8:28 am #
Yes, you can customize the call to read_csv() function for your dataset.
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Nauman October 10, 2019 at 7:35 am #
I used Tcn model .when i run i got this error .Index out of Range please please help me how to solve this
error ..i also search from stackoverflow but not found
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Jason Brownlee October 10, 2019 at 2:15 pm #
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Ipsita Dalai November 30, 2019 at 5:35 pm #
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Thanks for this nice article.I want to know if we have a digit classification problem and the last column
contain the class.Then how to load and print the digits ignoring the last column.
I tried it and it is showing .
REPLY
Jason Brownlee December 1, 2019 at 5:41 am #
This tutorial will show you how to load and show image data:
https://machinelearningmastery.com/how-to-load-and-manipulate-images-for-deep-learning-in-
python-with-pil-pillow/
I’m not sure I have a tutorial that can help directly, you may have to write some custom code
to load the CSV and convert it to an appropriate 3d numpy array.
REPLY
Ipsita Dalai December 2, 2019 at 5:32 pm #
Hi.I got my work done by keeping the data in the csv in numpy arrays and then slicing the
array.However your tutorials are very nice and helpful.Thanks.
Well done!
REPLY
Ipsita Dalai December 3, 2019 at 5:50 pm #
Thanks
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Jason Brownlee December 4, 2019 at 5:33 am #
You’re welcome.
REPLY
Alam Noor December 4, 2019 at 3:30 am #
Dear Jason,
How I can load .rek dataset in python? please comment if possible. Thanks
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Jason Brownlee December 4, 2019 at 5:46 am # Machine Learning ×
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I am not familiar with that file type, sorry. You can master applied Machine Learning
without math or fancy degrees.
Find out how in this free and practical course.
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Alam Noor December 5, 2019 at 1:30 am #Email Address
Thanks Jason
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Jason Brownlee December 5, 2019 at 6:42 am #
You’re welcome.
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hima December 26, 2019 at 3:33 pm #
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Jason Brownlee December 27, 2019 at 6:30 Start
am #
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And here:
https://machinelearningmastery.com/how-to-load-convert-and-save-images-with-the-keras-api/
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nazm May 21, 2020 at 12:06 am #
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hi jason, i am a fresher with no experience. how can i learn data science. can you suggest me a
roadmap? that will be helpful for me.
REPLY
Jason Brownlee May 21, 2020 at 6:20 am #
Right here:
https://machinelearningmastery.com/start-here/
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Aanya October 4, 2020 at 12:11 am #
And this:
https://machinelearningmastery.com/index-slice-reshape-numpy-arrays-machine-learning-python/
REPLY
Aanya October 4, 2020 at 6:22 pm #
Actually the data set i am using has data of two types of signals. i dont want to delete
the columns. i want to use “the columns of one type of signal” in one model the other in the
second one.
please do tell me if you can help me out
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thank you tho
REPLY
Jason Brownlee October 5, 2020 at 6:51 am #
You can use the ColumnTransformer, for an example see this tutorial:
https://machinelearningmastery.com/columntransformer-for-numerical-and-categorical-data/
REPLY
Dan October 7, 2020 at 4:50 pm #
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Hi!! is it possible to cluster the similar rows of a csv file ( 2 columns) together using nlp. If yes
could you please guide me with a post to help with the code.
REPLY
Jason Brownlee October 8, 2020 at 8:28 am #
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