Clinical and Molecular Characteristics of Carbapenem-Resistant Hypervirulent Klebsiella China
Clinical and Molecular Characteristics of Carbapenem-Resistant Hypervirulent Klebsiella China
(cKP), a new hypervirulent Klebsiella pneumoniae (hvKP) CR-hvKP in a tertiary hospital in Shanghai, eastern
with hypermucoviscosity has emerged as a clinically China. This study is of significance for understanding the
important pathogen that can cause highly invasive infec molecular epidemiology of CR-hvKP in Shanghai.
tions such as liver abscess in healthy and immunocompro
mised individuals.2 It is important to note that these
Materials and Methods
infections are often accompanied by destructive dissemi
nated infections, including endophthalmitis and Collection and Identification of
meningitis.3 The hypermucoviscous phenotype of hvKP K. pneumoniae Isolates
is usually due to increased production of capsular poly A retrospective study was conducted to collect non-
saccharides and the presence of specific virulence genes, repeated Klebsiella pneumoniae isolates from Shanghai
such as rmpA and rmpA2.4 The hypermucoviscous pheno Fifth People’s Hospital affiliated to Fudan University
type is generally determined by the “string test”. from January 2019 to December 2020. The percentage
K. pneumoniae colonies grown on blood agar plates over of hmKP, CRKP, CR-hmkp and CR-hvKP was calcu
night were stretched with a loop, and the “string test” is lated. All isolates were identified by VITEK-2 compact
positive when a viscous string >5mm in length is formed.5 automated microbiology analyzer (Biomerieux, Marcy
A recent study showed that peg-344, iroB, iucA, rmpA and L‘Etoile, France). The Maldi-Tof mass spectrometry
rmpA2 are biomarkers that can accurately identify hvkp.6 (Bruker Daltonics, Billerica, MA, USA) was used to
In this study, hypervirulent K. pneumoniae is defined as recheck the identification of the bacterial strain. The
having a hypermucoviscous phenotype (a positive string hypermucoviscous phenotype was determined by the
test result) and carrying K. pneumoniae virulence plasmid- “string test”. Carbapenem resistance was determined
associated loci (rmpA2, iutA, iucA). In the 1980s, case when imipenem or meropenem was resistant by antimi
reports from Taiwan first described community-acquired
crobial susceptibility test. Hypervirulent Klebsiella
liver abscesses caused by hvKP with severe terminal organ
pneumoniae is defined as having a hypermucoviscous
damage, such as meningitis and endophthalmitis.7,8 The
phenotype (a positive string test result) and carrying
sporadic spread of hvKP has occurred in many countries in
K. pneumoniae virulence plasmid-associated loci
Asia, Europe and the Americas. Although several cases of
(rmpA2, iutA, iucA).6
hvKP have been reported in Europe and the Americas, the
prevalence of hvKP mainly occurs in Asian countries,
especially in China.9 String Test
In general, hvKP has a high sensitivity to antibiotics, A single Klebsiella pneumoniae colony was inoculated on
while carbapenem-resistant K. pneumoniae (CRKP) has 5% sheep blood agar plate. After overnight culture at
a low toxicity. However, with the spread of drug-resistant 37°C, the bacterial colony was gently pulled up with the
and virulence plasmids, CR-hvKP was first described by inoculation loop and repeated for 3 times. If a viscous
Zhang et al in 2015, and more and more reports have been string formed in all 3 times and the length was longer
described in China.10 Because CR-hvKP can cause severe than 5mm, it was considered positive for the “string test”,
and hard-to-treat infections, it could become the next and the strain was hypermucoviscous phenotype.
“superbug” if a pandemic clone emerges. So far, most CR-
hvKP-induced infections have occurred in sporadic cases,
and small outbreaks are rare.11,12 Antimicrobial Susceptibility Testing
At present, the detection rate of CR-hvKP is low, and Antimicrobial susceptibility to several commonly used
the relevant studies are few. The molecular epidemiology antibiotics was detected by broth microdilution in the
of CR-hvKP is different in different regions, so it is VITEK-2 compact automated microbiology analyzer
necessary to study the clinical distribution and molecular (Biomerieux, Marcy L‘Etoile, France). The results were
epidemiological characteristics of CR-hvKP in this region. interpreted according to the guideline document estab
In this study, antimicrobial resistance genes, virulence- lished by Clinical and Laboratory Standards Institute
associated genes and MLST of CR-hvKP were analyzed (CLSI, 2019). Escherichia coli ATCC 25922 and
comprehensively. We attempted to investigate the preva Klebsiella pneumoniae ATCC 700603 were used as con
lence and molecular epidemiological characteristics of trols for antimicrobial susceptibility testing.
DovePress
(Years)
KP3 83 F Neurology Department Cerebrovascular disease, type 2 diabetes mellitus, ventilator-associated SCF, TZP Mechanical ventilation Died
pneumonia, epilepsy
https://doi.org/10.2147/IDR.S321704
KP58 86 F Central ICU Cerebrovascular disease, coronary heart disease, hypertension, urinary tract TZP, TGC Urinary catheter, Gastric tube Survived
infection
KP63 89 M Central ICU Cerebrovascular disease, hypertension, Parkinson’s disease, renal malignancy, TGC Mechanical ventilation Died
pulmonary infection
KP104 74 M Traditional Chinese Medicine Cerebrovascular disease, hypertension, urinary tract infection, pulmonary TZP, CRO Mechanical ventilation, Urinary catheter Survived
Department embolism
KP129 67 M Central ICU Cerebrovascular disease, type 2 diabetes, hypertension, coronary heart CAZ Mechanical ventilation, Urinary catheter, Died
disease, colon tumors Gastric tube
KP178 96 M Geriatric Ward Cerebrovascular disease, COPD, coronary heart disease TZP, SCF, MER Mechanical ventilation Died
KP188 91 M Respiratory Intensive Care Unit Chronic obstructive pulmonary disease, coronary heart disease, hypertension TZP Mechanical ventilation Survived
KP194 87 M Central ICU Pulmonary infection,hypertension, cerebrovascular disease TZP, SCF, MER, Venous catheter Died
CMZ
KP284 90 M Central ICU Cerebrovascular disease,Chronic obstructive pulmonary disease SCF Mechanical ventilation Died
KP290 63 M Central ICU Cerebrovascular disease,hypertension,type 2 diabetes SCF, TGC, Mechanical ventilation, Urinary catheter Died
CAZ-AVI
KP298 83 M Central ICU Cerebrovascular disease,hypertension, respiratory failure IPM, AN Mechanical ventilation, Urinary catheter Died
KP302 87 M Gastroenterology Department Chronic obstructive pulmonary disease,Sigmoid colon cancer CMZ Surgery Survived
KP358 75 M General Surgery Department Coronary heart disease, gallstone with cholecystitis, COPD SCF, CMZ, SXT Gastric tube Died
KP374 102 M Endocrinology Department Cerebrovascular disease, Parkinson’s disease, coronary heart disease TZP Urinary catheter Survived
KP393 71 M Central ICU Rectum cancer, COPD, cerebrovascular disease, hypertension CMZ Surgery Survived
Abbreviations: M, male; F, female; COPD, chronic obstructive pulmonary disease; SCF, cefoperazone/sulbactam; TZP, piperacillin/tazobactam; AN, amikacin; CMZ, cefmetazole; TGC, tigecycline; SXT, trimethoprim-sulfamethoxazole;
CRO, ceftriaxone; CAZ, ceftazidime; MER, meropenem; IPM, imipenem; CAZ-AVI, ceftazidime/avibactam.
Table 2 Virulence-Associated Gene Positive Rate of 39 CR- Table 3 The Antimicrobial Resistance Profile of 16 CR-hvKP
hmKP Isolates Isolates [n(%)]
Virulence- Viscous String Viscous String P value Antimicrobials CR-hvKP(n=16)
Associated Length ≤25mm Length>25mm
Susceptible Resistant
Gene (n=20) (n=19)
Ampicillin 0 16(100)
rmpA 6(30%) 7(36.8%) 0.651
Ampicillin/sulbactam 0 16(100)
rmpA2 8(40%) 8(42.1%) 0.894
Cefoperazone/sulbactam 0 16(100)
iutA 8(40%) 8(42.1%) 0.894
Piperacillin/tazobactam 0 16(100)
iucA 8(40%) 8(42.1%) 0.894
Cefazolin 0 16(100)
Cefuroxime 0 16(100)
Ceftazidime 0 16(100)
Virulence-Associated Gene Positive Rate Ceftriaxone 0 16(100)
of 39 CR-hmKP Isolates Cefepime 0 16(100)
Cefoxitin 0 16(100)
Thirty-nine CR-hmKP isolates were divided into two
Imipenem 0 16(100)
groups according to the length of viscous string. Among
Meropenem 0 16(100)
them, 20 CR-hmKP isolates with viscous string length Amikacin 6(37.5) 10(62.5)
≤25mm were divided into one group, and 19 CR-hmKP Gentamicin 5(31.2) 11(68.8)
isolates with viscous string length >25mm were divided Ciprofloxacin 2(12.5) 14(87.5)
into the other group. The positive rates of virulence- Trimethoprim-sulfamethoxazole 9(56.2) 7(43.8)
Figure 1 Virulence-associated genes, antimicrobial resistance genes, capsular serotype genes and MLST of 16 CR-hvKP isolates.
Note: The black color indicated the presence of a gene in the corresponding strain.
electrophoresis, there were 3–9 DNA fragments. The fin hospital in Shanghai area from 2019 to 2020 were studied
gerprint results showed that 16 CR-hvKP isolates were to evaluate whether there is a risk of CR-hvKP outbreak
highly polymorphic, and there were obvious differences and its development trend in this area. At the same time,
among isolates (Figure 3). this study can provide a more comprehensive clinical
assessment of infectivity, which is of great importance to
prevent the further spread of such isolates.
Discussion This study retrospectively analyzed the clinical distri
In recent years, there have been more and more reports on
bution and change trend of CR-hvKP from 2019 to 2020.
CR-hvKP isolates. The emergence of CR-hvKP isolates
The CR-hvKP isolates showed an increasing trend from
poses a significant threat to public health because they can
2019 to 2020. About 31.2% (5/16) of CR-hvKP were
cause serious, hard-to-treat infections in healthy popula isolated in 2019, and 68.8% (11/16) of CR-hvKP were
tions. In this study, the prevalence and molecular epide isolated in 2020. This is consistent with the increasing
miological characteristics of CR-hvKP in a tertiary trend of CR-hvKP literature reports. Since the first
description of CR-hvKP by Zhang et al in 2015,10 more
and more CR-hvKP literature has been reported,17–20
mainly in the Asia-Pacific region, especially in China. CR-
hvKP is a super bacterium with hypervirulence and multi-
drug resistance, which has great harm to people’s health
and high mortality rate. Therefore, attention should be paid
to it, and measures should be taken to prevent its spread.
Figure 2 Agarose gel electrophoresis of some virulence-associated genes, antimi
Antimicrobial resistance analysis of 16 isolates of CR-
crobial resistance genes and capsule serotype genes. hvKP showed high resistance rate to antibiotics. All isolates
Notes: M, DNA marker; 1, blaKPC(893bp); 2, entB(400bp); 3, rmpA2(609bp); 4,
rmpA(429bp); 5, iucA(239bp); 6, iutA(880bp); 7, aerobactin(556bp); 8, K1(1283bp); 9, were resistant to ampicillin, ampicillin/sulbactam, cefopera
K2(641bp); 10, allS(508bp); 11, mrkD(340bp); 12, fimH(609bp). zone/sulbactam, piperacillin/tazobactam, cefazolin,
cefuroxime, ceftazidime, ceftriaxone, cefepime, cefoxitin, correlated with the length of viscous string (or did not increase
imipenem, meropenem. The antimicrobial resistance rate of with the length of viscous string).
Trimethoprim-sulfamethoxazole was the lowest (43.8%), In this study, the ERIC PCR fingerprint was pleomorphic
followed by amikacin (62.5%), gentamicin (68.8%) and and there was no clinical intersection between patients, so 16
ciprofloxacin (87.5%). The antimicrobial resistance rate of patients infected with CR-hvKP were sporadic cases. In the
CR-hmkp studied by Lingling Zhan et al is similar to this past, the majority of CR-hvKP-induced infections have been
study.12 Patients infected with CR-hvKP have many under reported as isolated or sporadic cases,23,24 and small out
lying diseases, low immunity and weak ability of indepen breaks of CR-hvKP are rare in the literature.11,25 ST11 is
dent bacteria elimination. Therefore, timely treatment the most prevalent ST among CRKP and CR-hvKP isolates
according to the results of antimicrobial sensitivity test is in China.26,27 Although ST11 CR-hvKP accounted for 87.5%
very important. If necessary, infection site can be found and (14/16) of the 16 CR-hvKP isolates in this study, it could not
treated by means of drainage and debridement. be assumed that the 14 ST11 CR-hvKP were from the same
Thirty-nine CR-hmKP isolates were divided into two clone strain, so it was necessary to conduct homology ana
groups according to the length of viscous string. Among lysis by ERIC PCR fingerprint.
them, 20 CR-hmKP isolates with viscous string length In this study, all 16 patients infected with CR-hvKP
≤25mm were divided into one group, and 19 CR-hmKP iso underwent invasive procedures. An outbreak of fatal venti
lates with viscous string length >25mm were divided into the lator-associated pneumonia caused by CR-hvKP has been
other group. The positive rate of virulence-associated gene of reported,11 suggesting that invasive procedures may increase
CR-hmKP was compared between the two groups, and there the risk of CR-hvKP infection. Meanwhile, all 16 patients
was no statistical significance in the positive rate of virulence infected with CR-hvKP had underlying conditions, among
gene between the two groups. The study of Lin Z et al revealed which cerebrovascular disease was the most common.
that the virulence gene positive rate of hypermucoviscous A previous study showed that cerebrovascular disease is
Klebsiella pneumoniae was significantly higher than that of a significant independent risk factor for CR-hvKP
classical Klebsiella pneumoniae.21 However, it is not clear infection.28 The reason for this phenomenon may be that
whether the virulence gene positive rate is positively corre patients with cerebrovascular diseases have low immunity
lated with the length of viscous string. Other studies have and cannot independently exclude pathogenic bacteria, and
shown that classical Klebsiella pneumoniae may also be only rely on the bactericidal effect of antibiotics, which will
hypervirulent Klebsiella pneumoniae, with a high virulence lead to the phenomenon of multiple drug resistance com
gene positive rate.22 In this study, it was found that the viru bined with hypervirulence in the long run. Of the 16 patients,
lence gene positive rate of CR-hmKP was not positively 9 patients died, with a mortality rate of 56.3% (9/16). The
mortality rate was higher than that reported by previous Although the infection caused by CR-hvKP was sporadic,
studies10,12 and lower than that reported by previous it showed an increasing trend year by year. The results
studies.11,21 The mean age of 16 patients was 83.1±10.5 y, support previous studies indicating that the ST11 CR-
which showed that the elderly were more susceptible to CR- hvKP is the most prevalent CR-hvKP in China. ST23
hvKP infection. Previous study has showed that young peo and ST86 CR-hvKP showed higher virulence than ST11
ple are susceptible to hypervirulent Klebsiella pneumoniae.29 CR-hvKP, despite both being hypervirulent Klebsiella
However, other studies have showed that the elderly are pneumoniae. With the increase of the percentage of hyper
susceptible to hypervirulent Klebsiella pneumoniae,24,28 virulent Klebsiella pneumoniae, the antimicrobial resis
and the present study is consistent with that. tance rate of Klebsiella pneumoniae may decrease, which
Among the 16 isolates of CR-hvKP, except 1 isolate of will lead to blind optimism in clinical practice. Therefore,
ST23 CR-hvKP and 1 isolate of ST86 CR-hvKP, the other it is necessary to study the virulence of Klebsiella pneu
14 isolates were all ST11 CR-hvKP. The capsular serotype moniae as well as its antimicrobial resistance.
corresponding to ST23 CR-hvKP is K1, and the capsular
serotype corresponding to ST86 CR-HVKP is K2, which
Ethics Approval and Informed
is similar to previous studies.30–32 Patients infected with
ST23 (K1) CR-hvKP or infected with ST86 (K2) CR- Consent
hvKP died, with a mortality rate (100%) significantly The medical ethics council of Shanghai Fifth People’s
higher than that of patients infected with ST11 CR-hvKP Hospital approved this study (Approval No. 104, 2020).
(50%). As shown in Figure 1, the virulence-associated The clinical samples were part of the routine hospital
gene positive rate of ST23 (K1) or ST86 (K2) isolates laboratory procedure.
were higher than that of ST11 (K64) isolates, and the
mortality rate might be related to the virulence-associated Acknowledgments
gene positive rate. In this study, 16 isolates of CR-hvKP We thank all the staff of the Central Laboratory of
all carried the carbapenemase gene blaKPC-2 and extended- Shanghai Fifth People’s Hospital for their technical gui
spectrum β-lactamase gene blaSHV. blaKPC-2 is the most dance in this study.
prevalent carbapenemase gene in CR-hvKP in China.33 In
the study of Zhao, Y.et al,25 blaSHV is the extended-
Funding
spectrum β-lactamase gene with the highest positive rate.
This work was supported by the Minhang District Natural
The virulence genes entB, fimH, rmpA2, iutA, iucA were
Science Foundation of Shanghai (Grant No. 2020MHZ039).
present in all of 16 CR-hvKP isolates, followed by mrkD
(n=14), rmpA (n=13), aerobactin (n=2), allS (n=1), which
were similar to previous study.34 Some studies have shown Disclosure
that rmpA and rmpA2 (regulator of the mucoid phenotype The authors report no conflicts of interest in this work.
gene) can promote capsule polysaccharide secretion,
resulting in the hypermucoviscosity phenotype and
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