Geographica
Geographica
1 Introduction
The Web of data has recently started being populated with geospatial data and
geospatial extensions of SPARQL, like GeoSPARQL and stSPARQL, have been
defined. GeoSPARQL [12] is a recently proposed OGC standard for a SPARQL-
based query language for geospatial data expressed in RDF. GeoSPARQL defines
a vocabulary (classes, properties, and extension functions) that can be used in
RDF graphs and SPARQL queries to represent and query geographic features
with vector geometries. stSPARQL [9,1] is an extension of SPARQL 1.1 devel-
oped by our group for representing and querying geospatial data that change
over time. Similarly to GeoSPARQL, the geospatial part of stSPARQL defines
datatypes that can be used for representing in RDF the serializations of vec-
tor geometries encoded according to the widely adopted OGC standards Well
Known Text (WKT) and Geography Markup Language (GML). stSPARQL and
GeoSPARQL define extension functions from the OGC standard “OpenGIS Sim-
ple Feature Access” (OGC-SFA) that can be used by the users for manipulating
vector geometries.
In parallel with the appearance of GeoSPARQL and stSPARQL, researchers
have implemented geospatial RDF stores that support these SPARQL exten-
sions (our own system Strabon1 , Parliament2 and uSeekM3 ). Typically, this has
?
This work was supported in part by the European Commission project TELEIOS
(257662)
1
http://strabon.di.uoa.gr/
2
http://parliament.semwebcentral.org/
3
http://dev.opensahara.com/projects/useekm/
been done by extending existing RDF stores that had no geospatial functional-
ities (e.g., Sesame) and by relying in state of the art spatially-enabled RDBMS
(e.g., PostGIS) for the storage and querying of geometries. One reason that this
approach has been successful is that the relational realization of the OGC-SFA
standard has been widely adopted by many RDBMS for storing and manipu-
lating vector geometries. The state of the art in this area is summarized in the
survey paper [8].
The above advances to the state of the art in query languages and imple-
mented systems has not so far been matched with much work on the evalua-
tion and benchmarking of implemented geospatial RDF stores. Although there
are various benchmarks for spatially-enabled RDBMS [17,13,4,14,15,11], there is
only one paper in the literature that proposes a benchmark for geospatial data
expressed in RDF [6]. However, since this work has preceded the proposal of
GeoSPARQL and stSPARQL, it does not cover much of the features available in
these languages. For example, only point and rectangle geometries are used in
the data and only two topological functions and two non-topological functions
are considered, while metric spatial functions and spatial aggregates are not dis-
cussed. Similarly, only the geospatial RDF store SPAUK, which is a precursor
to Parliament, has been evaluated using the benchmark. Finally, [6] uses a syn-
thetic workload only and does not consider any linked geospatial datasets such
as the ones that are available in the LOD cloud today.
In this paper we go significantly beyond [6] and develop a benchmark, that
can be used for the evaluation of the new generation of RDF stores supporting
the query languages GeoSPARQL and stSPARQL. Our benchmark, nick-named
Geographica4 , is composed by two workloads with their associated datasets and
queries: a real-world workload based on publicly available linked data sets and
a synthetic workload. The real-world workload uses publicly available linked
geospatial data, covering a wide range of geometry types (e.g., points, lines,
polygons). To define this workload, we follow the approach of the benchmark
Jackpine [15] and we define a micro benchmark and a macro benchmark. The
micro benchmark tests primitive spatial functions. We check the spatial compo-
nent of a system with queries that use non-topological functions, spatial selec-
tions, spatial joins and spatial aggregate functions. In the macro benchmark we
test the performance of the selected RDF stores in typical application scenar-
ios like reverse geocoding, map search and browsing, and a real-world use case
from the Earth Observation domain. In the second workload of Geographica we
use a generator that produces synthetic datasets of various sizes and generates
queries of varying thematic and spatial selectivity. In this way, we can perform
the evaluation of geospatial RDF stores in a controlled environment. In this part
we follow the rationale of earlier papers [14,9,3]. For reasons of reproducibility,
both workloads are publicly available5 .
4
Geographica (Greek: Γεωγραφικά) is a 17-volume encyclopedia of geographical
knowledge written by the greek geographer, philosopher and historian Strabon
(Greek: Στράβων) in 7 BC. (http://en.wikipedia.org/wiki/Geographica)
5
http://geographica.di.uoa.gr/
We chose to test the systems Strabon, Parliament and uSeekM. To the best of
our knowledge, these systems are the only ones that currently provide support for
a rich subset of GeoSPARQL and stSPARQL. Other RDF stores like OpenLink
Virtuoso, OWLIM and AllegroGraph, allow only the representation of point
geometries and provide support for a few geospatial functions [8]. The limited
functionality provided by these systems did not allow us to include them in the
experiments presented in this paper A comparison between generic RDF stores
with limited geospatial capabilities and geospatial RDF stores are given in the
long version of this paper6 .
The rest of the paper is organized as follows. Section 2 presents previous
related work. The benchmark and its results are described in Sections 3 and 4,
respectively and general conclusions and future work are discussed in Section 5.
2 Related Work
In this section we discuss the most important benchmarks that are relevant
to Geographica. We first present well-known benchmarks for SPARQL query
processing, then benchmarks from the area of spatial relational databases and,
finally, the only available benchmark for querying linked geospatial data.
Benchmarks for SPARQL query processing. Four well-known benchmarks
for SPARQL querying are the Lehigh University Benchmark (LUBM) [5], the
Berlin SPARQL Benchmark (BSBM) [2], the SP2 Bench SPARQL Performance
Benchmark [16] and the DBPedia SPARQL Benchmark (DBPSB) [10]. LUBM,
BSBM and SP2 Bench create a synthetic dataset based on a use case scenario
and define some queries covering a spectrum of SPARQL characteristics. For
example, the synthetic dataset of SP2 Bench resembles the original publications
dataset of DBLP while the dataset of LUBM describes the university domain.
The creators of DBPSB take a different approach. They propose a benchmark
creation methodology based on real-world data and query logs. The proposed
methodology is used in [10] to create a benchmark based on DBPedia data and
query-logs.
Benchmarks for spatial relational databases. One of the first benchmarks for
spatial relational databases has been the SEQUOIA benchmark [17] which fo-
cuses on Earth Science use cases. In order for its results to be representative of
Earth Sciences use cases, SEQUOIA uses real-world data (satellite raster data,
point locations of geographic features, land use/land cover polygons and data
about drainage networks covering the area of USA) and real-world queries. Its
queries cover tasks like data loading, raster data management, filtering based on
spatial and non-spatial criteria, spatial joins, and path computations over graphs.
The SEQUOIA benchmark has been extended in [13] to evaluate the geospa-
tial DBMS Paradise. Two other well known benchmarks for spatial relational
databases which use synthetic vector data are Á La Carte [4] and VESPA[14].
Á La Carte uses a dataset consisting only of rectangles which are generated ac-
cording to various statistical distributions and it has been used to compare the
6
http://geographica.di.uoa.gr/files/Geographica-ISWC-2013-long-version.pdf
Datasets Size Triples # of Points # of Lines # of Polygons
GAG 33MB 4K - - 325
CLC 401MB 630K - - 45K
LGD (only ways) 29MB 150K - 12K -
GeoNames 45MB 400K 22K - -
DBPedia 89MB 430K 8K - -
Hotspots 90MB 450K - - 37K
performance of different spatial join techniques. VESPA [14] creates a more com-
plex dataset with more geometry types (polygons, lines and points) and it has
been used to compare PostgreSQL with Rock & Roll deductive object oriented
database. More recently, [15] has defined a more generic benchmark for spatial
relational databases, called Jackpine. It includes two kinds of benchmarking,
micro and macro. Micro benchmarking tests topological predicates and spatial
analysis functions in isolation. Macro benchmarking defines six typical spatial
data applications scenarios and tests a number of queries based on them.
Benchmarks for geospatial RDF stores. The only published benchmark for
querying geospatial data encoded in RDF has been proposed by Kolas [6]. He
extends LUBM to include spatial entities and to test the functionality of spatially
enabled RDF stores. LUBM queries are extended to cover four primary types
of spatial queries, namely spatial location queries, spatial range queries, spatial
join queries, nearest neighbor queries. Range queries aim to test cases of various
selectivity, while spatial joins aims to test whether the query planner selects a
good plan by taking into account the selectivity of the spatial and ontological
part of each query.
Datasets. In this section we describe the datasets that we use for the real-world
workload. We have datasets that play an important role in the Linked Open
Data Cloud, such as the part of DBPedia and GeoNames referring to Greece,
despite the fact that their spatial information is limited to points. In addition
we have part of the LinkedGeoData7 (LGD) dataset which has richer geospatial
7
http://linkedgeodata.org/
information from OpenStreetMap8 about the road network and rivers of Greece.
We also chose to use the Greek Administrative Geography9 (GAG) and the
CORINE Land Use/Land Cover10 (CLC) dataset for Greece which have complex
polygons. The CLC dataset is made available by the European Environmental
Agency for the whole Europe and contains data regarding the land cover of
European countries. Both of these datasets with information about Greece have
been published as linked data by us in the context of the European project
TELEIOS11 . Finally, we include a dataset containing polygons that represent
wild fire hotspots. This dataset has been produced by the National Observatory
of Athens (NOA) in the context of project TELEIOS by processing appropriate
satellite images as described in [7]. Each dataset is loaded in a separate named
graph so that each query access only the part of the dataset that is needed. Some
important characteristics of the datasets used can be found in Table 1.
Query Description
Reverse Geocoding
RG1 Find the closest populated place (from GeoNames)
RG2 Find the closest street (from LGD)
Map Search and Browsing
MSB1 Find the co-ordinates of a given POI based on thematic criteria (from GeoNames)
MSB2 Find roads in a given bounding box around these co-ordinates (from LGD)
MSB3 Find other POI in a given bounding box around these co-ordinates (from GeoNames)
Rapid Mapping for Fire Monitoring
RM1 Find the land cover of areas inside a given bounding box (from CLC)
RM2 Find primary roads inside a given bounding box (from LGD)
RM3 Find detected hotspots inside a given bounding box (from Hotspots)
RM4 Find municipality boundaries inside a given bounding box (from GAG)
RM5 Find coniferous forests inside a given bounding box which are on fire (from CLC and
Hotspots)
RM6 Find road segments inside a given bounding box which may be damaged by fire (from
LGD and Hotspots)
an axis, we produce datasets of arbitrary size. As we will see in the following sec-
tion, this enabled us to adjust the selectivity of the spatial predicates appearing
in queries in a uniform way too.
As in [14], the generated land ownership dataset consists of n2 features with
hexagonal spatial extent, where each hexagon is placed uniformly on a n × n
grid. The cardinality of the land ownerships is n2 . The generated state dataset
consists of ( n3 )2 features with hexagonal spatial extent, where each hexagon
is placed uniformly on a n3 × n3 grid. The cardinality of the state geometries
is ( n3 )2 . The generated road dataset consists of n features with sloping line
geometries. Half of the line geometries are roughly horizontal and the other half
are roughly vertical. Each line consists of n2 + 1 line segments. The cardinality of
the road geometries is n. The generated point of interest dataset consists of n2
features with point geometries which are uniformly placed on n sloping, evenly
spaced, parallel lines. The cardinality of the point of interest geometries is n2 .
In Figure 1(b) we present a sample of the generated geometries.
Table 4: Query templates for generating SPARQL queries corresponding to (a) spatial
selections, and (b) spatial joins.
by parameter FUNCTION holds between each of them and the rectangle defined
by parameter GEOM. By modifying the value of the parameter namespace ns we
specify the dataset and the corresponding type of geometric information that is
examined by an instance of the query template.
The query template used for producing SPARQL queries corresponding to
spatial joins involves two datasets identified by the values of the parameter
namespaces ns1 and ns2. In this query template as well, parameters THEMA and
THEMA’ control the thematic selectivity of the query. The value of parameter
FUNCTION defines the topological relation that must hold between instances of
the two datasets that are involved in an instance of the query template. Pa-
rameter FUNCTION can be instantiated with every function defined in the
Geometry Topology extension of GeoSPARQL. In our experiments, as described
in Section 4.3, we used geof:sfIntersects, geof:sfTouches, geof:sfWithin.
For example, by instantiating the query template (b) with the values poi for ns1,
state for ns2, 1 for THEMA, 2 for THEMA’ and geof:sfWithin for FUNCTION, we
get a SPARQL query that asks for all generated points of interest that are inside
half of the generated states.
These query templates allow us to generate SPARQL queries with great diver-
sity regarding their spatial and thematic selectivity, thus stressing the optimizers
of the geospatial RDF stores that we test and evaluating their effectiveness in
identifying efficient query plans.
4 Benchmark Results
In this section we present the results of running Geographica against the open
source systems Strabon, Parliament and uSeekM that currently provide support
for a rich subset of GeoSPARQL and stSPARQL. A comparison between these
geospatial RDF stores and generic RDF stores that provide support only for
point geometries is given in the long version of this paper.
Each query in the micro and the synthetic benchmark was run three times on
cold and warm caches. For warm caches, we ran each query once before measur-
ing the response time, in order to warm up the caches. We measured the response
time for each query posed by measuring the elapsed time from submitting the
query until a complete iteration over the results had been completed. The re-
sponse time of each query was measured and the median of all measurements
is reported. A timeout of one hour is set as a time limit for all queries. For the
macro benchmark, we run each scenario many times (with different initialization
each time) for one hour without cleaning the caches and we report the average
time for a complete execution of all queries defined in each scenario. Strabon and
uSeekM utilize Postgres enhanced with PostGIS as a spatially-enabled relational
backend. For these systems, we set up an instance of Postgres 9.2 with PostGIS
2.0 and we tuned it to make better use of the system resources.
For every dataset of Geographica, a unique property is used to connect ge-
ometries with their serialization (e.g. the Corine Land Use/Land cover ontology
defines the property clc:asWKT), and this property is defined as a subproperty
of the property geo:asWKT that is defined by GeoSPARQL. Parliament is able to
identify and index a triple that represents the serialization of a geometric object
only when the property geo:asWKT is used. As a result, the RDFS reasoning ca-
pabilities of Parliament have to be enabled so that it performs forward chaining
during data loading and indexes the geometry using the spatial index as well.
Strabon and uSeekM do not perform any reasoning on the input data.
Micro Benchmark. The results of the micro benchmark are shown in Table 7
where the response time of each query is reported for both cold and warm caches.
First, the results of evaluating the queries with non-topological function are
reported. For this class of queries uSeekM and Strabon have comparable response
times while uSeekM is the fastest system. We observed that uSeekM does not
utilize Postgres for evaluating these queries, but chooses to evaluate them using
the native store of Sesame which is known to be more efficient, for small datasets,
than Sesame implementations on top of a DBMS, like Strabon. Computing the
area of polygons (Query 6) was tested only in uSeekM and Strabon since Parlia-
ment does not offer such functionality. We observe that none of the RDF stores
highly exploits the warm caches when evaluating non-topological functions. This
is because the non-topological functions used in this set of queries are compu-
tationally intensive (especially when complex geometries are used) and the time
spent in the CPU dominates I/O time.
In the case of spatial selections, Strabon and uSeekM have comparable re-
sponse times while Strabon is the fastest system most of the times. Both systems
choose to start the query evaluation process by evaluating the spatial part of a
query in PostGIS using the spatial index that is available. uSeekM continues by
evaluating the rest of the query using the native store of Sesame. This adds a
small overhead compared to Strabon which evaluates the whole query in Post-
greSQL and utilizes a unified dictionary encoding scheme for both thematic and
spatial information. On the contrary, the optimizer of Parliament does not take
into consideration filters containing GeoSPARQL functions, so it evaluates the
spatial predicate exhaustively over the results of the thematic part of the query.
Queries 14 and 15 are semantically equivalent. Both ask for points that have
a given distance from a given point. However, Query 14 creates the buffer of a
given point with radius r and asks for points which are within this buffer, while
Query 15 asks for points that have distance less than r from the given point.
uSeekM and Parliament evaluate both queries by starting with the thematic part
of the query and then they evaluate exhaustively the spatial operations without
using the spatial index. The difference in the response time of queries 14 and
15 for these systems is due to the fact that calculating the distance between
two points is much cheaper that evaluating the corresponding point-in-polygon
operation. Strabon follows a similar plan for evaluating Query 15. However, for
Query 14, Strabon calculates the buffer of the given polygon, and uses it to probe
the spatial index for discovering points that lie inside the constructed polygon.
This choice is correct since the response times remains constant.
In the case of spatial joins, uSeekM and Parliament are able to evaluate only
queries 18 and 27 given the time limit of one hour. Parliament does not take
into account GeoSPARQL extension functions during the optimization phase,
resulting in query plans that evaluate separately the graph patterns correspond-
ing to different graphs, compute the Cartesian product between them, and then
apply the spatial predicate to the result of the Cartesian product. This strategy
is very costly, thus Parliament is not able to answer most spatial joins given the
time limit. uSeekM does not utilize PostGIS for evaluating spatial joins. Simi-
larly to Parliament, it applies the spatial predicate to the result of the Cartesian
product of the graph patterns. Strabon avoids evaluating Cartesian products by
Cold caches (sec.) Warm caches (sec.)
Type Query
Strabon uSeekM Parliament Strabon uSeekM Parliament
Q1 42.33 38.11 152.71 41.36 36.25 132.67
Q2 22.48 21.47 90.23 21.06 19.35 70.62
Non topological Q3 29.48 27.06 98.56 27.73 24.13 79.40
construct functions Q4 7.65 3.22 23.16 7.00 3.08 19.67
Q5 14.68 4.17 21.63 13.78 5.00 19.58
Q6 23.82 19.58 - 21.06 18.35 -
Q7 0.36 1.22 2.42 0.01 0.02 1.36
Q8 0.42 0.57 7.69 0.06 0.05 5.84
Q9 0.83 1.27 35.03 0.16 0.05 34.09
Q10 0.73 1.51 76.85 0.13 0.10 57.18
Q11 2.66 2.96 195.87 2.03 1.29 175.98
Spatial selections Q12 0.79 0.55 2.39 0.38 0.03 1.20
Q13 0.82 0.89 63.14 0.13 0.04 59.60
Q14 0.50 2.29 24.34 0.03 1.63 19.97
Q15 0.50 0.99 3.44 0.12 0.30 0.56
Q16 2.79 5.52 63.20 2.19 1.96 59.85
Q17 3.06 1.60 35.89 2.62 0.86 34.39
Q18 4.52 2233.73 2880.20 3.98 2504.24 2875.02
Q19 1272.54 >1h >1h 1284.62 >1h >1h
Q20 115.93 >1h >1h 105.39 >1h >1h
Q21 113.26 >1h >1h 107.76 >1h >1h
Q22 26.33 >1h >1h 25.20 >1h >1h
Spatial joins
Q23 26.29 >1h >1h 25.01 >1h >1h
Q24 26.66 >1h >1h 25.37 >1h >1h
Q25 342.87 >1h >1h 341.04 >1h >1h
Q26 343.30 534.61 2040.00 341.28 534.15 2030.42
Q27 343.72 >1h >1h 342.06 >1h >1h
Q28 3.56 - - 2.92 - -
Aggregate functions
Q29 258.35 - - 258.00 - -
identifying graph patterns that are related only through the spatial predicate
and pushes the evaluation of the spatial join in PostGIS, thus resulting in good
response times. In all cases, warm caches do not affect the response time of the
queries since a large number of intermediate results is produced. Finally, spatial
aggregations are tested only in Strabon since it is the only system that supports
such functions. We notice that Query 28 which computes the minimum bounding
box that contains all geometries of the GAG dataset is much faster than Query
29 which computes the union of the same geometries since the former operation
is much cheaper than the latter one which is computationally expensive.
Macro Benchmark. The results of the macro benchmark are shown in Table 6.
In this table we report the average time needed for a complete iteration of all the
queries of each scenario. The Reverse Geocoding scenario has two queries which
use the function distance with a fixed limit. uSeekM performs the best in this
scenario while Strabon needs an order of magnitude more time. The Map Search
and Browsing scenario has one thematic query and two spatial selection queries.
As described in Section 4.2 Strabon and uSeekm are efficient in evaluating spatial
selections and they have good performace in this scenario as well. Finally, the
Rapid Mapping for Fire Monitoring scenario is the most demanding scenario. It
comprises three spatial selections queries, but also two complex queries which
include spatial joins and construct new geometries (boundary and intersection).
Only Strabon can serve this scenario since uSeekM and Parliament needed more
than an hour to evaluate the query RM6. This happens because the query RM6
requires evaluating a demanding spatial join which is evaluated in a costy way
by Parliament and uSeekM as described in previous paragraphs.
4.3 Synthetic Workload
Dataset Storage. Table 5 presents the time required by each system to store
and index the synthetic dataset. The synthetic dataset has fewer predicates and
more geometries that the real one. uSeekM requires more time than Strabon
for storing the dataset, since it stores it in a Sesame native store and then
it stores triples with geometric information at PostGIS as well. This overhead
is significant compared to the total time required for storing the dataset, but
leads to better response times in some cases. As we have already explained in
Section 4.2, Parliament needs more time to store the synthetic dataset as well
as the real-world dataset because it performs forward chaining on input data.
5 Conclusions
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Strabon Strabon Strabon Strabon
uSeekM uSeekM uSeekM uSeekM
Parliament Parliament Parliament Parliament
3 3 3 3
10 10 10 10
% of Nodes in query region % of Nodes in query region % of Nodes in query region % of Nodes in query region
Intersects Intersects Within Within
(a) tag 1, cold caches (b) tag 512, cold caches (c) tag 1, cold caches (d) tag 512, cold caches
Strabon Strabon Strabon Strabon
uSeekM uSeekM uSeekM uSeekM
Parliament Parliament Parliament Parliament
% of Nodes in query region % of Nodes in query region % of Nodes in query region % of Nodes in query region
Intersects Intersects Within Within
(e) tag 1, warm caches (f) tag 512, warm caches (g) tag 1, warm caches (h) tag 512, warm caches
Strabon uSeekM Parliament Strabon uSeekM Parliament Strabon uSeekM Parliament
2 2 102
10 10
101
101 101
100
0 0
10 10 10-1
10-1 1- 1- 51 51 1- 1- 51 51 10-1 1- 1- 51 51 1- 1- 51 51 10-2 1- 1- 51 51 1- 1- 51 51
1 51 2- 2- 1 51 2- 2- 1 51 2- 2- 1 51 2- 2- 1 51 2- 2- 1 51 2- 2-
2 1 51 2 1 51 2 1 51 2 1 51 2 1 51 2 1 51
2 2 2 2 2 2
cold caches warm caches cold caches warm caches cold caches warm caches