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Ggplot2 Course2 Ch4 Slides

The document provides information on data visualization using ggplot2 in R. It discusses different plot types like bar plots, dynamite plots, and pie charts. It includes code examples to create these different plots using the sleep dataset and mtcars dataset. The examples show how to customize plots by adding points, error bars, adjusting scales and themes. The goal is to practice different types of plots that best represent data distributions and relationships.

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Graciela Minardi
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© © All Rights Reserved
We take content rights seriously. If you suspect this is your content, claim it here.
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Download as PDF, TXT or read online on Scribd
7 views

Ggplot2 Course2 Ch4 Slides

The document provides information on data visualization using ggplot2 in R. It discusses different plot types like bar plots, dynamite plots, and pie charts. It includes code examples to create these different plots using the sleep dataset and mtcars dataset. The examples show how to customize plots by adding points, error bars, adjusting scales and themes. The goal is to practice different types of plots that best represent data distributions and relationships.

Uploaded by

Graciela Minardi
Copyright
© © All Rights Reserved
We take content rights seriously. If you suspect this is your content, claim it here.
Available Formats
Download as PDF, TXT or read online on Scribd
You are on page 1/ 30

DATA VISUALIZATION WITH GGPLOT2

Bar Plots
Data Visualization with ggplot2

Chapter Content
● Common pitfalls
● Best way to represent data
Data Visualization with ggplot2

Bar plot
● Two types
● Absolute values
● Distribution
Data Visualization with ggplot2

Mammalian sleep
> str(sleep)
'data.frame': 76 obs. of 3 variables:
$ vore : Factor w/ 4 levels "Carnivore","Herbivore",..: 1 4 2 ...
$ total: num 12.1 17 14.4 14.9 4 14.4 8.7 10.1 3 5.3 ...
$ rem : num NA 1.8 2.4 2.3 0.7 2.2 1.4 2.9 NA 0.6 ...
Data Visualization with ggplot2

Dynamite plot
24

21

18

Total sleep time (h)


> d <- ggplot(sleep, aes(vore, total)) + 15
scale_y_continuous("Total sleep time (h)", 

limits = c(0, 24), 
 12

breaks = seq(0, 24, 3), 



9
expand = c(0, 0)) +
scale_x_discrete("Eating habits") + 6
theme_classic()
> d + 
 3

stat_summary(fun.y = mean, geom = "bar", 
 0


fill = "grey50") + Carnivore Herbivore Insectivore Omnivore
Eating habits
stat_summary(fun.data = mean_sdl, mult = 1, 

geom = "errorbar", width = 0.2)
Data Visualization with ggplot2

Individual data points


> d +
geom_point(alpha = 0.6, position = position_jitter(width = 0.2))

24

21

18
Total sleep time (h)

15

12

0
Carnivore Herbivore Insectivore Omnivore
Eating habits
Data Visualization with ggplot2

errorbar
> d +
geom_point(alpha = 0.6, position = position_jitter(width = 0.2)) +
stat_summary(fun.y = mean, geom = "point", fill = "red") +
stat_summary(fun.data = mean_sdl, mult = 1, geom = "errorbar", 

width = 0.2, col = "red")

24

21

18
Total sleep time (h)

15 ●

12
●
●
●
9

0
Carnivore Herbivore Insectivore Omnivore
Eating habits
Data Visualization with ggplot2

pointrange
> d +
geom_point(alpha = 0.6, position = position_jitter(width = 0.2)) + 

stat_summary(fun.data = mean_sdl, mult = 1, width = 0.2, col = "red")

24

21

18
Total sleep time (h)

15 ●

12
●
●
●
9

0
Carnivore Herbivore Insectivore Omnivore
Eating habits
Data Visualization with ggplot2

Without data points


> d +
stat_summary(fun.y = mean, geom = "point") +
stat_summary(fun.data = mean_sdl, mult = 1, 

geom = "errorbar", width = 0.2)

24

21

18
Total sleep time (h)

15 ●

12
●
●
●
9

0
Carnivore Herbivore Insectivore Omnivore
Eating habits
Data Visualization with ggplot2

24

21

18
Total sleep time (h)

15 ●

12
●
●
●
9

0
Carnivore Herbivore Insectivore Omnivore
Eating habits
DATA VISUALIZATION WITH GGPLOT2

Let’s practice!
DATA VISUALIZATION WITH GGPLOT2

Pie Charts
Data Visualization with ggplot2

Stacked bar chart …


> ggplot(mtcars, aes(x = factor(1), fill = factor(cyl))) +
geom_bar(width = 1)

30

20 factor(cyl)
4
count

6
8
10

1
factor(1)
Data Visualization with ggplot2

… pie chart
> ggplot(mtcars, aes(x = factor(1), fill = factor(cyl))) +
geom_bar(width = 1)
> ggplot(mtcars, aes(x = factor(1), fill = factor(cyl))) +
geom_bar(width = 1) +
coord_polar(theta = "y")

30

0
30

20 factor(cyl) 1 factor(cyl)
factor(1)

4
count

4
6 6
8 8
10
10
20

count
0

1
factor(1)
Data Visualization with ggplot2

Parts-of-a-whole
0
30

1 factor(cyl)
factor(1)

4
6

10 8

20

count
Data Visualization with ggplot2

HairCol
> HairCol
Hair Sex Value fillin n nprop
1 Black Male 56 #666666 279 0.4712838
2 Brown Male 143 #A65628 279 0.4712838
3 Red Male 34 #E41A1C 279 0.4712838
4 Blond Male 46 #FFFF33 279 0.4712838
5 Black Female 52 #666666 313 0.5287162
6 Brown Female 143 #A65628 313 0.5287162
7 Red Female 37 #E41A1C 313 0.5287162
8 Blond Female 81 #FFFF33 313 0.5287162
Data Visualization with ggplot2

HairCol - Bar Charts


> ggplot(HairCol, aes(x = Hair, y = Value, fill = fillin)) +
geom_bar(stat = "identity", position = "dodge") +
facet_grid(. ~ Sex) +
scale_fill_identity() +
theme_classic()

150
Male Female
Hard to reveal interesting trends
Difference in total counts is unclear

100
Value

50

Black Brown Red Blond Black Brown Red Blond


Hair
Data Visualization with ggplot2

HairCol - Pie Charts


> ggplot(HairCol, aes(x = n/2, y = Value, fill = fillin, width = n)) +
geom_bar(stat = "identity", position = "fill") +
facet_grid(. ~ Sex) +
scale_fill_identity() +
coord_polar(theta = "y") +
theme(...)

Male Female angle, area, length


mediocre encoding elements
Data Visualization with ggplot2

Alternative
> ggplot(HairCol, aes(x = Sex, y = Value, fill = fillin, width = nprop)) +
geom_bar(stat = "identity", position= "fill") +
scale_y_continuous("Proportion") +
scale_x_discrete("", expand = c(0, 0)) +
scale_fill_identity() +
coord_flip() +
theme(...)
Female

Female

Male

0.00 0.25 0.50 0.75 1.00


Male
Proportion
DATA VISUALIZATION WITH GGPLOT2

Let’s practice!
DATA VISUALIZATION WITH GGPLOT2

Heat Maps
Data Visualization with ggplot2

barley.s
> head(barley.s, 15)
variety site 1932 1931
1 Svansota Grand Rapids 16.63333 29.66667
2 Svansota Duluth 22.23333 25.70000
3 Svansota University Farm 27.43334 35.13333
4 Svansota Morris 35.03333 25.76667
5 Svansota Crookston 20.63333 40.46667
6 Svansota Waseca 38.50000 47.33333
7 No. 462 Grand Rapids 19.90000 24.93334
8 No. 462 Duluth 22.50000 28.10000
9 No. 462 University Farm 25.56667 36.60000
10 No. 462 Morris 47.00000 30.36667
11 No. 462 Crookston 30.53333 48.56666
12 No. 462 Waseca 44.70000 65.76670
13 Manchuria Grand Rapids 22.13333 32.96667
14 Manchuria Duluth 22.56667 28.96667
15 Manchuria University Farm 26.90000 27.00000
Data Visualization with ggplot2

Grand Rapids
Trebi
Wisconsin No. 38
No. 457
Glabron
Peatland
Velvet
No. 475
Manchuria
No. 462
Svansota
Duluth
Trebi
Wisconsin No. 38
No. 457
Glabron
Peatland
Velvet
No. 475
Manchuria
No. 462
Svansota
University Farm
Trebi
Wisconsin No. 38
No. 457
Glabron
Peatland yield
Velvet 70
No. 475
Manchuria 60
No. 462
Variety

Svansota 50
Morris 40
Trebi 30
Wisconsin No. 38 20
No. 457
Glabron 10
Peatland
Velvet 0
No. 475
Manchuria
No. 462
Svansota
Crookston
Trebi
Wisconsin No. 38
No. 457
Glabron
Peatland
Velvet
No. 475
Manchuria
No. 462
Svansota
Waseca
Trebi
Wisconsin No. 38
No. 457
Glabron
Peatland
Velvet
No. 475
Manchuria
No. 462
Svansota
1931 1932
Year
Data Visualization with ggplot2

barley
> head(barley, 15)
yield variety year site
1 27.00000 Manchuria 1931 University Farm
2 48.86667 Manchuria 1931 Waseca
3 27.43334 Manchuria 1931 Morris
4 39.93333 Manchuria 1931 Crookston
5 32.96667 Manchuria 1931 Grand Rapids
6 28.96667 Manchuria 1931 Duluth
7 43.06666 Glabron 1931 University Farm
8 55.20000 Glabron 1931 Waseca
9 28.76667 Glabron 1931 Morris
10 38.13333 Glabron 1931 Crookston
11 29.13333 Glabron 1931 Grand Rapids
12 29.66667 Glabron 1931 Duluth
13 35.13333 Svansota 1931 University Farm
14 47.33333 Svansota 1931 Waseca
15 25.76667 Svansota 1931 Morris
Data Visualization with ggplot2

Grand Rapids
Trebi
Wisconsin No. 38
No. 457
Glabron
Peatland
Velvet
No. 475
Manchuria
No. 462
Svansota
Duluth
Trebi
Wisconsin No. 38
No. 457
Glabron
Peatland
Velvet
No. 475
Manchuria
No. 462
Svansota
University Farm
Trebi
Wisconsin No. 38
No. 457
Glabron
Peatland yield
Velvet 70
No. 475
Manchuria 60
No. 462
Variety

Svansota 50
Morris 40
Trebi 30
Wisconsin No. 38 20
No. 457
Glabron 10
Peatland
Velvet 0
No. 475
Manchuria
No. 462
Svansota
Crookston
Trebi
Wisconsin No. 38
No. 457
Glabron
Peatland
Velvet
No. 475
Manchuria
No. 462
Svansota
Waseca
Trebi
Wisconsin No. 38
No. 457
Glabron
Peatland
Velvet
No. 475
Manchuria
No. 462
Svansota
1931 1932
Year
Data Visualization with ggplot2

Grand Rapids
Trebi ● ●
Wisconsin No. 38 ● ●
No. 457 ● ●
Glabron ● ●
Peatland ● ●
Velvet ● ●
No. 475 ● ●
Manchuria ● ●
No. 462 ● ●
Svansota ● ●

Duluth
Trebi ● ●
Wisconsin No. 38 ● ●
No. 457 ● ●
Glabron ● ●
Peatland ●●
Velvet ● ●
No. 475 ● ●
Manchuria ● ●
No. 462 ● ●
Svansota ● ●

University Farm
Trebi ● ●
Wisconsin No. 38 ●●
No. 457 ● ●
Glabron ● ●
Peatland ● ●
Velvet ● ●
No. 475 ● ●
Manchuria ●
No. 462 ● ● Year
Variety

Svansota ● ●

Morris
● 1931
Trebi ● ● ● 1932
Wisconsin No. 38 ● ●
No. 457 ● ●
Glabron ● ●
Peatland ● ●
Velvet ● ●
No. 475 ● ●
Manchuria ● ●
No. 462 ● ●
Svansota ● ●

Crookston
Trebi ● ●
Wisconsin No. 38 ● ●
No. 457 ● ●
Glabron ● ●
Peatland ● ●
Velvet ● ●
No. 475 ● ●
Manchuria ● ●
No. 462 ● ●
Svansota ● ●

Waseca
Trebi ● ●
Wisconsin No. 38 ●●
No. 457 ● ●
Glabron ● ●
Peatland ● ●
Velvet ● ●
No. 475 ● ●
Manchuria ● ●
No. 462 ● ●
Svansota ● ●

0 10 20 30 40 50 60 70
Yield (bushels/acre)
Data Visualization with ggplot2

Grand Rapids Duluth University Farm Morris Crookston Waseca


70

60

Variety
50 Trebi
Wisconsin No. 38
Yield (bushels/acre)

No. 457
40
Glabron
Peatland
Velvet
30
No. 475
Manchuria
No. 462
20
Svansota

10

0
1931 1932 1931 1932 1931 1932 1931 1932 1931 1932 1931 1932
Year
Data Visualization with ggplot2

70

60

50

Site
Yield (bushels/acre)

Waseca
40
Crookston
Morris
University Farm
30 Duluth
Grand Rapids

20

10

0
1931 1932
Year
Data Visualization with ggplot2

70

60

50

Site
Yield (bushels/acre)

Waseca
40
Crookston
Morris
University Farm
30 Duluth
Grand Rapids

20

10

0
1931 1932
Year
DATA VISUALIZATION WITH GGPLOT2

Let’s practice!

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