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Mod Base

ModBase is a database containing over 3.8 million comparative protein structure models created using the ModPipe modeling pipeline and MODELLER program. It is developed and maintained at the University of California, San Francisco by the laboratory of Andrej Sali. Models in ModBase can be accessed through the Protein Model Portal or by downloading from the ModBase website.

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29 views

Mod Base

ModBase is a database containing over 3.8 million comparative protein structure models created using the ModPipe modeling pipeline and MODELLER program. It is developed and maintained at the University of California, San Francisco by the laboratory of Andrej Sali. Models in ModBase can be accessed through the Protein Model Portal or by downloading from the ModBase website.

Uploaded by

william919
Copyright
© © All Rights Reserved
Available Formats
Download as PDF, TXT or read online on Scribd
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ModBase

ModBase is a database of annotated


comparative protein structure models,
ModBase
containing models for more than 3.8 million
unique protein sequences.[1] Models are Content
created by the comparative modeling pipeline
ModPipe which relies on the MODELLER Description Database of comparative protein
program. structure models
Contact
ModBase is developed in the laboratory of
Andrej Sali at UCSF. ModBase models are Research center University of California at San
also accessible through the Protein Model Francisco
Portal. Laboratory Department of Bioengineering and
Therapeutic Sciences
See also Authors Ursula Pieper, Eswar Narayanan,
Ben Webb, Andrej Sali
Homology modeling
Primary citation Pieper & al. (2011)[1]
Release date 1998
References
Access
1. Pieper, Ursula; Webb Benjamin M; Website http://salilab.org/modbase
Barkan David T; Schneidman-
Duhovny Dina; Schlessinger Avner; Download URL ftp://salilab.org/databases/modbase
Braberg Hannes; Yang Zheng; Meng Web service URL http://salilab.org/modweb
Elaine C; Pettersen Eric F; Huang
Conrad C; Datta Ruchira S; Sampathkumar Parthasarathy; Madhusudhan Mallur S;
Sjölander Kimmen; Ferrin Thomas E; Burley Stephen K; Sali Andrej (Jan 2011). "ModBase,
a database of annotated comparative protein structure models, and associated resources" (h
ttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC3013688). Nucleic Acids Res. England. 39
(Database issue): D465-74. doi:10.1093/nar/gkq1091 (https://doi.org/10.1093%2Fnar%2Fgk
q1091). PMC 3013688 (https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3013688).
PMID 21097780 (https://pubmed.ncbi.nlm.nih.gov/21097780).

External links
http://salilab.org/modbase

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