GEEMMM
GEEMMM
Article
The Google Earth Engine Mangrove Mapping
Methodology (GEEMMM)
J. Maxwell M. Yancho 1 , Trevor Gareth Jones 1,2,3, *, Samir R. Gandhi 1,4 , Colin Ferster 5 ,
Alice Lin 1 and Leah Glass 1
1 Blue Ventures Conservation—Mezzanine, The Old Library, Trinity Road, St Jude’s, Bristol BS2 0NW, UK;
[email protected] (J.M.M.Y.); [email protected] (S.R.G.); [email protected] (A.L.);
[email protected] (L.G.)
2 Department of Forest Resources Management, University of British Columbia, Vancouver, BC V6T 1Z4, Canada
3 Terra Spatialists, The Blue House, 660 West 13th Avenue, Vancouver, BC V5Z 1N9, Canada
4 The Jolly Geographer, 7 Yorke Gate, Watford, Hertfordshire WD17 4NQ, UK
5 Department of Geography, University of Victoria, P.O. Box 1700 STN CSC, Victoria, BC V8W 2Y2, Canada;
[email protected]
* Correspondence: [email protected]
Received: 1 October 2020; Accepted: 9 November 2020; Published: 16 November 2020
Abstract: Mangroves are found globally throughout tropical and sub-tropical inter-tidal coastlines.
These highly biodiverse and carbon-dense ecosystems have multi-faceted value, providing critical
goods and services to millions living in coastal communities and making significant contributions
to global climate change mitigation through carbon sequestration and storage. Despite their many
values, mangrove loss continues to be widespread in many regions due primarily to anthropogenic
activities. Accessible, intuitive tools that enable coastal managers to map and monitor mangrove
cover are needed to stem this loss. Remotely sensed data have a proven record for successfully
mapping and monitoring mangroves, but conventional methods are limited by imagery availability,
computing resources and accessibility. In addition, the variable tidal levels in mangroves presents
a unique mapping challenge, particularly over geographically large extents. Here we present a
new tool—the Google Earth Engine Mangrove Mapping Methodology (GEEMMM)—an intuitive,
accessible and replicable approach which caters to a wide audience of non-specialist coastal managers
and decision makers. The GEEMMM was developed based on a thorough review and incorporation of
relevant mangrove remote sensing literature and harnesses the power of cloud computing including a
simplified image-based tidal calibration approach. We demonstrate the tool for all of coastal Myanmar
(Burma)—a global mangrove loss hotspot—including an assessment of multi-date mapping and
dynamics outputs and a comparison of GEEMMM results to existing studies. Results—including both
quantitative and qualitative accuracy assessments and comparisons to existing studies—indicate that
the GEEMMM provides an accessible approach to map and monitor mangrove ecosystems anywhere
within their global distribution.
Keywords: GEEMMM; mangroves; remote sensing; google earth engine; Myanmar; cloud computing;
digital earth
1. Introduction
Mangroves are a species of woody plants which comprise unique, halophytic communities in the
tropical and sub-tropical inter-tidal coastlines of the world [1]. When meeting accepted definitions
based on attributes including height, diameter and canopy closure, mangroves can qualify as forest [2].
Areas not qualifying as forest are peripheral parts of wider mangrove ecosystems, including expanses
dominated by submerged, dwarf or scrub, and fringe plants [1,3–5]. Mangrove ecosystems —both forest
and non-forest—are found in 102 countries and 21 territories [5]. The value of mangrove ecosystems
is multifaceted, including the provisioning of critical goods (e.g., fuel wood, fish, shellfish, medicine,
fiber, and timber) and services (e.g., shoreline stabilization, storm protection, and cultural, recreational
and tourism opportunities) to millions of people residing in coastal communities [6–9]. In addition,
mangrove ecosystems are incredibly biodiverse, providing habitat for numerous species, many of which
are rare, at-risk, or endangered [10–12]. Mangrove forests are also incredibly carbon-dense and meet or
exceed many of their terrestrial peers in sequestration and storage [13–15]. Increasingly, the conservation,
restoration and managed-use of mangrove ecosystems is being pursued through payments for ecosystem
services (PES) programs, including forest carbon initiatives (e.g., REDD+, Plan Vivo) [16,17].
Despite their multifaceted value, global mangrove loss is widespread. In the last two decades of
the 20th century the world lost an estimated 35% of mangrove forest cover [18]. While globally the
rate of loss has thus far slowed in the 21st century—an estimated 4% from 1996 to 2016—many parts
of the world, notably SE Asia, remain loss hotspots [19–21]. The primary driver of mangrove loss
is anthropogenic activities including aquaculture, agriculture, urban development, and unmanaged
harvest [22]. Accurate, reliable, contemporary, and easily updated information representing the extent
of mangrove ecosystems is required by decision makers and managers and to help countries pursue
and meet environmental targets (e.g., Millennium Development Goals and Ramsar Convention on
Wetlands of International Importance especially as Waterfowl Habitat) [23–25]. Remotely sensed data
have a well-established utility for mapping and monitoring the multi-date distribution of mangrove
ecosystems and quantifying change over time; however, the remote sensing of mangrove environments
has its own unique set of challenges which must be overcome to produce accurate results, including
the variable presence or absence of water associated with daily tidal fluctuations [23,26]. Fluctuating
tides can drastically influence the spectral properties of mangrove ecosystems making information on
tidal condition at time of image acquisition vital [27]. Many mangrove studies have ignored variable
tidal conditions, combining images ranging from low to high tide [23]. Recently, studies have used
image composites that include imagery acquired during selective tides (i.e., high and/or low); however,
these have covered limited areas (e.g., a single bay within a single Landsat scene) where reliable
local tidal stations or modeled tidal products are available, and have not evaluated dynamics [27–29].
Other studies demonstrated the potential to use remote sensing or models to calibrate tides across larger
areas; however, these approaches depend on substantial expertise to run specialized or customized
software and the models depend on high quality training data—which is not always available—making
them too complex and inaccessible for most potential users [30–33].
Beyond tidal considerations, conventional mapping techniques—while successful and
informative—remain limited by imagery availability, required computing resources, and necessary
technical expertise [34]. A single uncompressed Landsat 8 scene is larger than 1.6 gigabytes,
and applications using multiple scenes require computing resources that present a barrier to many
practitioners [35]. Emerging tools and technologies are ushering in a new era for land-cover
mapping and monitoring [26,36]. Cloud-based platforms, most notably Google Earth Engine (GEE),
provide unprecedented volumes of ready-to-use geospatial data, including the entire Landsat archive
(i.e., radiometrically and geometrically corrected), and tool and computing resources for rapid and
seamless processing [34]. GEE stores data and completes processing on numerous remote servers
(i.e., parallel processing), removing the need to download and process data on local stand-alone
computers. This eliminates many barriers related to the hardware and technical expertise required
for remote sensing. All that is required to use GEE is a computer capable of running a modern web
browser and an internet connection—for development, research, or educational purposes, access is
freely granted through Google, LLC (Limited Liability Corporation), by signing up through the GEE
Homepage. These advancements allow for developing and carrying out mapping methodologies over
unprecedented spatial extents with drastically increased speed (e.g., University of Maryland Global
Forest Dynamics), making advanced remote sensing applications accessible to considerably broader
Remote Sens. 2020, 12, 3758 3 of 35
audiences [34,37]. In addition, tools built for GEE and distributed over the Internet can facilitate
methodological repeatability while providing opportunities for adaptability and customization [38].
To date, several studies have explored and demonstrated the utility of GEE for mapping mangroves
yielding encouraging results and improvements over conventional methods [39–43]. While there is
clear utility for mapping and monitoring mangrove ecosystems using GEE, published methodologies
remain inaccessible to many would-be users. To replicate published methods requires an advanced
level of specialized expertise with remote sensing, geospatial processing techniques, and/or coding.
To date, no intuitive and accessible version of a mangrove mapping methodology within GEE has
been proposed which caters to a wider audience of non-specialist conservation managers and decision
makers. In addition, existing tools fail to fully capitalize on the wealth of local knowledge and
understanding often held by coastal managers. Lastly, no single methodology comprehensively
incorporates all of the best available options for mapping and monitoring mangrove ecosystems from
across existing published studies and includes a widely applicable approach toward tidal calibration.
Herein we present a comprehensive, intuitive, accessible, and replicable methodology encapsulated
in a new tool—the Google Earth Engine Mangrove Mapping Methodology (i.e., the GEEMMM).
The GEEMMM was designed to provide a ready-to-go methodology for non-expert practitioners
to map and monitor mangrove ecosystems, enabling them to combine their local knowledge with
GEE’s cloud computing capabilities. We developed the GEEMMM following a thorough review
of mangrove remote sensing literature and incorporating the best available practices. In addition,
our approach to tidal calibration operates completely within GEE based entirely on shoreline reflectance
(i.e., image-based). To demonstrate the tool, we present an example of multi-date, desk-based (i.e.,
involving no field work) mapping and change assessment for Myanmar (Burma)—a global loss
hotspot [19]. The GEEMMM—freely accessible to non-profit users—runs on detailed and well
commented code within the GEE environment and is adaptable to any mangrove area of interest.
GEEMMM outputs include multi-date classified maps, accuracies, and dynamic assessments. To set
the stage for trailing the GEEMMM for Myanmar and contextualizing the outputs, and similar to
methods detailed in Gandhi and Jones [19], all existing single- and multi-date mangrove maps for
Myanmar were inventoried, described, and compared, with an emphasis on existing information on
distribution and dynamics. We introduce the pilot area of interest (i.e., AOI), describe existing datasets,
overview the GEEMMM tool, and compare the results to existing datasets.
2.1. Google Earth Engine Mangrove Mapping Methodology (GEEMMM) Pilot AOI
Figure 1. The preliminary region of interest (ROI) for the GEEMMM pilot representing coastal
Myanmar; sub-national AOIs wherein qualitative accuracy assessments (QAAs) were untaken for
existing maps (i.e., Baseline QAA AOIs); sub-national AOIs wherein GEEMMM QAAs were undertaken
(i.e., GEEMMM QAA AOIs). Also shown are sub-national AOIs wherein classification reference areas
(CRAs) were derived (i.e., CRA AOIs) and the location of known mangrove loss hotspots based on
existing studies (i.e., Giri et al. [70], Saah et al. [73], GMW (Bunting et al. [74]), De Alban et al. [57],
Clark Labs [75].
Remote Sens. 2020, 12, 3758 6 of 35
Table 1. Inventory and summary of existing national-level mangrove datasets for Myanmar—July 2020.
DSM (30 m) [81] or upload their own. For the Myanmar pilot, the preliminary ROI is shown in
Figure 1, the GEE global mangrove distribution circa 2000 was used for known mangrove extent,
the Global Administrative Boundaries database (GADM) Myanmar dataset (v3.6, www.gadm.org,
an external source) for coastline, and the GEE JAXA-ALOS Global PALSAR-2/PALSAR Yearly Mosaic
25 m land-cover data for elevation [81,82].
Table 2. Summary of GEEMMM user inputs and selected variables used in the Myanmar pilot.
In the second step of Module 1: Section 1, the user defines input variables and sets how workflow
thresholds are calculated. Table 2 lists all of the user variables and user inputs for the GEEMMM
including those used in this pilot study. GEE provides unprecedented access to the Landsat catalog,
offering approximately 1.3 M scenes from 1984 to present [34]. While it is certainly advantageous
to have access to so many images, the choice of imagery based on parameters such as year(s) and
time of year(s) must be considered carefully. Two variables define contemporary and historic year(s)
of interest. There are two four-digit date inputs to bookend the historic and contemporary year
windows. If the user wishes to isolate a single historic or contemporary year the same is selected
for each book-end. Following the year(s) of interest, the month(s) of interest are selected. Seasonal
variations can affect terrestrial vegetation adjacent to mangroves, and atmospheric conditions can
change throughout the year, so the ability to target specific months is essential to generating optimal
image composites [83–85]. The user identifies the month(s)-of-interest using two book-end numbers
corresponding to the 12 months of the year; they may overlap the new year; e.g., “11” (Nov.) to
“2” (Feb.). Next, the allowable cloud cover limit, an integer between 0 and 100, is used to filter the
Landsat metadata [86]. Also related to cloud cover, the user decides whether to mask the imagery,
and to what extent, i.e., setting a mild cloud mask using the USGS-provided (United States Geological
Survey) quality band, or an aggressive cloud mask where pixels are excluded based on their ‘whiteness’
Remote Sens. 2020, 12, 3758 9 of 35
and a temperature band threshold [35]. For the sixth input, the approximate tidal zone—a numeric
input (in m) that represents the tidally active zone buffered inland from the coastline—is entered.
Approximate tidal zone helps isolate the portion of images subject to reflectance changes from tidal
variation, while reducing influence from other non-tidal variability. The default value is 1000 m. Next,
the user chooses how water is masked out of the imagery, either using a mask developed from the
water present in the contemporary imagery alone, or a combination mask based on pixels determined
to be water in both historic and contemporary imagery. A pixel is determined to be water if its
value was greater than the 0.09 modified normalized difference water index (i.e., MNDWI) threshold
established by Xu [87]. The modified normalized difference water index (MNDWI) was developed to
detect water pixels by calculating the normalized difference between the green and short-wave infrared
(e.g., Landsat 8 Operational Land Imager, 1.57–1.65 µm) bands, making it suitable for measuring the
amount of water present in an acquisition. Topographic thresholds are set to generate masks based on
elevation and slope. The user can either manually enter the elevation (m) and slope (%) thresholds,
or have them automatically calculated based on the 99th percentile values extracted from within the
known mangrove extent dataset. The user can further opt to search for inland-fringe mangroves,
which have been documented as far as 85 km inland [75,88]. If inland-fringe mangroves are targets
for the classification(s), the preliminary ROI is doubled for elevations lower than 5 m based on [89].
The last step in Module 1: Section 1 is the selection of spectral indices which the user would like to
calculate for each image composite. After the workflow begins, the user chooses which indices they
would like to calculate from a list of fourteen indices, including some which are mangrove-specific.
The complete list of indices included in the GEEMMM can be found in Table 3. The contemporary
and historic windows from which imagery was selected for the Myanmar pilot study were 2014–2018
and 2004–2008, respectively. The months of acquisition were limited to June through December,
corresponding with the wet season and the months directly following that time [90]. The imagery was
filtered using cloud cover information for each acquisition at a 30% threshold. All 14 spectral indices
were selected for calculation.
Module 1: Section 2 determines the finalized ROI for processing. Numerous studies have
demonstrated the utility of reducing the classification extent to the minimum required area—this
approach helps reduce spectral confusion with unnecessary scene components [44,91]. The preliminary
ROI is used to isolate a section of shoreline which is buffered at 5, 10, 15, 20, 25, 30, and 35 km intervals.
5 km intervals were used to ensure observable differences in buffer distances. 35 km was used as
a maximum extent based on observations in several countries, including Myanmar. These buffer
distances are used to calculate the area of known mangroves that falls within their respective bounds.
The user either selects their buffer distance preference from a drop-down menu containing values in
between, greater than, or less than the listed intervals.
In either case, the buffer distance is used to create the finalized ROI. This ROI is used to
select Landsat path/row tiles and generate image composites, clip composite imagery and masks
(i.e., elevation, slope, and water), define the classification and dynamics extent, and provide a visual aid
for optional QAAs. The finalized ROI used in the pilot study was based on a 23 km buffered shoreline
which represents the maximum observed distance between known mangrove extent (i.e., Giri et al. [44])
and Myanmar’s coastline.
Module 1: Section 3 generates the imagery composites required for multi-date classifications.
Given the daily dynamic nature of mangrove ecosystems—wherein tides inundate 2–3 times
per day on average—tidal conditions and the associated presence (or lack thereof) of water must be
considered—there are a growing number of mangrove detection indices which rely on the isolation
of high and low tide imagery [29,92,93]. The GEEMMM uses an image-based approach to calibrate
imagery based on high and low tide. For each available image, an MNDWI is generated and the land
is masked out using JAXA-ALOS Global PALSAR-2/PALSAR Yearly Mosaic 25 m land-cover data.
The MNDWI was selected as the key spectral index because it has been proven to be an improvement
over the normalized difference water index (NDWI), and was developed explicitly for detecting water
Remote Sens. 2020, 12, 3758 10 of 35
and non-water pixels [87]. The shoreline is buffered to the user-defined tidal zone value and mean
MNDWI is used to create a constant value band wherein the greater the MNDWI mean value, the more
water present within the tidal zone, corresponding to higher-tidal conditions. A second value band is
added to each available image by multiplying mean MNDWI by −1, isolating lower-tide conditions.
Clouds, if present and opted to be, are masked prior to the calculation of mean MNDWI using only
the pixel quality band or an aggressive approach where the three visible (red, greed, and blue) and
thermal bands mask based on digital number reflectance thresholds. Under the aggressive filter,
a pixel is considered to be a cloud if its visible spectrum bands digital number reflectance values are
greater than or equal to 1850, and the thermal band (brightness temperature, Kelvin) digital number is
less than or equal to 2955. For the Myanmar pilot, the aggressive cloud filter option was selected to
filter the imagery in an effort to remove low-altitude clouds which were not correctly classified by
the Landsat cloud detection algorithm. If/once clouds have been masked, all available images and
their corresponding tidal value bands are used to create best available pixel-based highest observable
tide (i.e., HOT) and lowest observable tide (i.e., LOT) composites. Composite generation works as
if all available images were stacked and organized by desired tidal condition. For example, as the
LOT composite is being generated, the imagery with the lowest observed tidal condition is placed on
top, and any missing pixels in that image, e.g., clouds masked, would be filled by the next best tidal
observation and so on until all the gaps are filled. This process takes place for both the contemporary
and historic data sets, resulting in a maximum of four composites (i.e., HOT and LOT contemporary,
HOT and LOT historic). Because tides are determined using value bands, it is possible that all of the
pixels for HOT and/or LOT composites within a particular area may be from one image (e.g., if no
clouds were present and that image represented best available tidal conditions). The GEEMMM
employs USGS surface reflectance Landsat products, which are readily available within GEE [35,94].
Module 1: Section 4 calculates the user selected indices from Section 1 of Module 1 (Table 3).
There are a growing number of Landsat-related spectral indices available, many of which relate directly
to mangroves such as the submerged mangrove recognition index (SMRI) and the modular mangrove
recognition index (MMRI) [29,43]. The GEEMMM provides the user with the option to select from
14 spectral indices, of which four are mangrove-specific. The selected indices are calculated for both
contemporary and historic HOT and LOT composites and added as potential classification inputs.
Figure 2 compares the appearance of a typical mangrove-dominated area in Myanmar across all of
the available mangrove-specific spectral indices (i.e., combined mangrove recognition index (CMRI),
MMRI, SMRI, MRI) in the GEEMMM [29,43,93,98].
In Module 1: Section 5 the classification extent is further reduced through masking.
In accordance with numerous mangrove mapping studies (e.g., Jones et al. [91], Thomas et al. [68],
and Weber et al. [105]), the GEEMMM incorporates cloud, water, slope, and elevation masks to produce
a finalized AOI. The cloud mask is generated and applied before composites are produced. The water
mask is calculated for each composite using the methodology established in Xu [87], where the
MNDWI layer for historic and contemporary LOT composites are generated and then a threshold
is applied. Pixels with a value greater than 0.09 are considered to be water and a binary mask is
produced. Depending on user selection, the water mask is finalized by either using just contemporary
or combining the historic and contemporary and selecting only pixels determined to be water in both
composites. This pilot study used the combined water mask. The two topographic masks are generated
through user-defined thresholds or automatically determined using the 99th percentile of elevation and
slope for known mangroves. The Myanmar pilot study used the known mangrove extent to generate
topographic masks based on elevation values > 39 m and slope values > 16%. Noting how minor
elevation is within mangrove ecosystems, the elevation threshold actually represents an approximate
combined elevation + canopy height past which mangroves are not found. The generated masks are
combined to create a binary, single unified final mask which is applied to all composites within the
finalized ROI.
Remote Sens. 2020, 12, 3758 11 of 35
Module outputs include: (1) HOT contemporary composite, (2) LOT contemporary composite,
(3) HOT historic composite, (4) LOT historic composite, (5) finalized ROI, and (6) Finalized Mask.
Table 3. List of all spectral indices available in the GEEMMM including mangrove-specific.
Figure 2. The appearance of a typical mangrove-dominated area in Myanmar across all of the available
mangrove-specific spectral indices (i.e., CMRI, MMRI, SMRI, MRI) in the GEEMMM [91].
Remote Sens. 2020, 12, 3758 12 of 35
Table 4. Names and description of classes and numbers of classification reference areas (CRAs).
Also shown is how many CRAs were derived within each sub-national CRA AOI (Figure 1).
Contemporary Historic
Class Class Description
AOI 1 AOI 2 AOI 3 Total AOI 1 AOI 2 AOI 3 Total
Grass and/or shrubs dominate; some
Non-Forest exposed soil + scattered trees; canopy
10 8 7 25 3 7 0 10
Vegetation < 30% closed; active cropland, vegetation
appears green
Terrestrial Forested areas; canopy > 30% closed
10 8 7 25 1 9 0 10
Forest (includes plantations (e.g., palm))
Closed-Canopy
Tall, mature stands; canopy > 60% closed 12 16 9 37 9 1 0 10
Mangrove
Open-Canopy Short-medium stands; canopy 30–60%
6 3 2 11 0 10 0 10
Mangrove closed
Soil/sediment/sand dominates; includes
Exposed/Barren senesced/unhealthy (i.e., inactive) crops, 4 4 4 12 2 4 4 10
mudflats, recently deforested areas
Residual
Water areas missed from masking 4 3 3 10 3 4 4 11
Water
120 61
In Module 2: Section 3: once the user confirms their final choice of classification inputs and
target classes, classification—the process by which remotely sensed data is assigned land-cover
classes—can occur [109,110]. There are many established algorithms for classifying Landsat data
to produce maps of mangrove distribution, including classification and regression trees (CART),
support vector machines (SVM), unsupervised k-means, decision trees, and maximum likelihood
(ML) [28,29,42,111,112]. Many of these algorithms are available to use within the GEE environment;
however, random forests—also available in GEE—is well established and used to map mangroves
across the world, with distinct success within the GEE environment [27,41,43,106,113]. The inputs for
random forest include an imagery data set (i.e., selected Landsat bands and spectral indices), training
data (i.e., randomly selected 70% of CRAs), and a numeric parameter determining the number of
‘trees’ to be employed. For each classification the output is a single band raster with the same spatial
resolution as the input data (30 m), with each pixel assigned a map value based on target classes.
Following classification, the user can choose to merge map classes—this is particularly advantageous
in scenarios where initial map classes were used to capture variability, but for which confidence in class
boundaries may be lacking. For example, in the Myanmar pilot, we merged the two mangrove classes
(i.e., closed- and open-canopy) post-classification. This ensured capturing mangrove variability while
not having to draw a distinct boundary between these potentially overlapping classes in the final map.
Classification accuracy—defined as “a comparison of the derived product to ground condition”—is
not reported in numerous studies involving mangrove mapping [114,115]. Following classification and
optional class merging, in Module 2: Section 3, the GEEMMM automatically produces resubstitution
and error matrices for all output classifications [116]. The resubstitution matrices determine end
land-cover class for the CRAs used for training the classifier. The error matrices use 30% of CRAs
held back from classification to independently evaluate map accuracies. The overall accuracy is
reported using the error matrix ‘accuracy’ tool, found within the GEE library. Overall accuracy is
printed below both the error and resubstitution matrices. By reviewing the error matrices and visually
inspecting the output maps the user may wish to collapse/further collapse classes (e.g., if two classes
are very confused). If the user combines classes, they can opt to re-calculate accuracy, re-generating
resubstitution and error matrices. The final step for all users to exporting the classification maps to
their assets. Module 2 outputs include, (1) correlation and spectral separability graphs, (2) classified
maps, and (3) accuracy assessments.
Remote Sens. 2020, 12, 3758 14 of 35
Figure 3. The appearance of all targeted classes in highest observable tide (HOT), lowest observable
tide (LOT), key spectral indices, and fine spatial resolution satellite imagery viewable in Google Earth
Pro (Google, Mountain View, CA, USA) [79]. The HOT and LOT composites represent 432 (R: NIR,
G: red, B: green) or 453 (R: NIR, G: SWIR, B: red) false color. The spectral indices include enhanced
vegetation index (EVI—[101]), combined mangrove recognition index (CMRI—[98]) and modified
normalized difference water index (MNDWI—[87]).
Myanmar pilot we further clipped using a uniquely uploaded boundary (GADM) and exclusive economic
zone (EEZ) from Marine Regions (v10 World EEZ,) [117]. For the QAA, the user enters CRA information
(e.g., asset path, class names, and unique class numbers).
In Module 3: Section 2, multi-date outputs are used to quantify dynamics. This is foundational
to understanding long-term trends and the effectiveness of conservation efforts. The user selects
which map class they would like to view, and loss, persistence, and gain (i.e., LPG) are calculated.
The automatically produced, self-masked layers are added to the GEE-GUI map interface. The resulting
area for each dynamic assessment is printed to the console, expressed in hectares. Building on the
inventory, description, acquisition and comparison of existing datasets, the dynamics resulting from
this GEEMMM pilot were also compared to published values.
Module 3: Section 3—building on the previously referenced methods detailed in Gandhi and
Jones [19]—facilitates an optional QAA. For this GEEMMM QAA, an interactive map is divided
into three linked maps (Figure 1). In each map, two sets of grids are automatically generated,
(1) 100 km by 100 km grids, and (2) within each of those cells, sub-divided 10 km by 10 km grids.
The 100 km × 100 km grid cells are randomly selected, retaining 50% of the grid cells that intersect the ROI.
In slight contrast to the baseline QAA described in Section 2.1.4, for the QAA tool in the GEEMMM, within
each selected grid cell, 20% of the sub-grid cells are selected. The tool works by cycling through the sub grid
cells, and giving the user the option to view simultaneously on linked maps showing Landsat composites
where the date can be changed at the user’s preference, the classifications produced in Module 2, and the
imagery used for the classifications generated in Module 1. The user then has the ability to record in the GUI
whether each map class is under-, well-, or over-represented, and record ‘free comments’ for each sub-cell.
Module 3 outputs include: automatically generated LPG as raster and—if performed—QAA grid
(for viewing outside of GEE). The user also has the option to export the QAA table (containing the under,
over, and well representation statistics, and the free comments) as a CSV (i.e., comma separated values) file
at any point during the QAA.
Table 5. Comparison of single- and multi-date datasets based on mapped classes, accuracy, mangrove distribution (ha), dynamics, and known limitations. Accuracy:
OA = overall accuracy; UA = user’s accuracy; PA = producer’s accuracy.
Dataset/ Mapped
Year Extent (ha) Dynamics (ha, %) Discrete/Continuous Accuracy Known Limitations
Author(s) Classes
7 classes OA 96.9%
1999 703,945 including Mangrove UA 98.11%
Clark Labs [75] −76,465 Mangrove Mangrove PA 93.04%
−10.9% Discrete No significant limitations disclosed.
33 classes 2014: OA 93.7%
2018 627,480 including Mangrove UA 94%
Mangrove Mangrove PA 92%
Limitations with use of ‘quick look’ data due to modest
8, including 6
technical performance. The authors state that
Blasco et al. [77] 1999 690,000 n/a Discrete mangrove Not disclosed
classification accuracy could be improved by 10% if
classes
NDVI and empirical thresholds were included.
Mangrove Small patches of mangrove (<0.09–0.27 ha) not well
MFW (Giri et al. Positional root mean square
2000 494,584 n/a Discrete presence vs no captured.
[44]) error of ±1/2 pixel
presence
Remote Sens. 2020, 12, 3758 17 of 35
Table 5. Cont.
Dataset/ Mapped
Year Extent (ha) Dynamics (ha, %) Discrete/Continuous Accuracy Known Limitations
Author(s) Classes
2000 279,260 Pixels containing just 0.01% forest canopy cover are
CGMFC-21 −27,064 Mangrove Positional root mean square included as mangrove falling well below commonly
Continuous
(Hamilton and −9.7% canopy cover error of ±1/2 pixel used minimum canopy cover definitions
Casey [78]) 2014 252,196 (e.g., [78,118,119]).
Richards and 2000 502,466 −27,770 Mangrove Positional root mean square Reported figures reflect rates of mangrove loss rather
Continuous
Friess [47] −5.5% deforestation error of ±1/2 pixel than net mangrove change, likely reducing areal figures.
2012 474,696
Estoque et al. 2000 666,759 −191,122 Mangrove 2000: OA 91%
Discrete No significant limitations disclosed.
[56] −28.7% presence vs no 2014: OA 97%
2014 475,637
presence
WAM (Spalding
2004 502,911 n/a Discrete Not disclosed Not disclosed No significant limitations disclosed.
et al. [5] *)
Figure 4. Comparison of distribution for all existing single- and multi-date mangrove distribution
maps for Myanmar, including results of GEEEMMM pilot.
Direct comparisons of existing datasets are challenging due to differences in temporal coverage,
methodologies, and imagery sources. Although most studies use optical imagery (typically
medium-resolution Landsat), some of the more recent studies combine optical with radar imagery
(e.g., Bunting et al. [74]; De Alban et al. [57]). Several different mapping techniques are employed,
while two of the datasets (Hamilton and Casey [78]; Richards and Friess [47]) calculate and present
continuous measures of mangrove canopy cover, rather than discrete (i.e., presence vs no presence).
Interpreting continuous datasets for areal mangrove extent is problematic as pixels containing just
0.01% canopy cover are included as mangrove falling well below commonly used minimum definitions
mangrove forest (e.g., 30%) [18,78,91].
Of the five datasets reporting, all achieve overall accuracies of >75%, with four >85% [56,57,74,75].
QAAs further identified Clark Labs [75] as mapping mangroves in Myanmar most consistently.
Mangroves were under-represented in the remaining five datasets assessed, particularly in Giri et al. [70]
and Saah et al. [73], but also in Bunting et al. [74] (Table 6).
Existing studies clearly establish that Myanmar has experienced consequential mangrove loss;
however, baseline distributions and dynamics (when available) are highly variable. These discrepancies
are likely attributed to the differences highlighted in Table 5. In addition, the definitions for mangroves
Remote Sens. 2020, 12, 3758 19 of 35
and surrounding land-cover classes and the actual examples used for classification (i.e., CRAs) likely
further account for differences. Only with agreed upon conventions for defining mangroves and
providing examples as CRAs can cross-study comparisons become standardized and optimized. Falling
short of this, discrepancies will remain common.
3.2. Results of the Google Earth Engine Mangrove Mapping Methodology (GEEMMM)
Figure 5. Examples of image composite outputs from the GEEMMM showing lowest observable tide
(LOT), panel (a) and highest observable tide (HOT), panel (b). The north oriented, false colour (R: NIR
G: SWIR B: Red) Landsat image is over Kaingthaung Island, Ayeyarwady Region, Myanmar.
Remote Sens. 2020, 12, 3758 20 of 35
Figure 6. National overview of image composite outputs from the GEEMMM showing highest
observable tide (HOT) and lowest observable tide (LOT) (false color composites, R: NIR, G: SWIR,
B: Red). The composites were further reduced in area using topographic and combined water masks.
(A) Contemporary HOT; (B) Contemporary LOT; (C) Historic HOT; (D) Historic LOT.
Remote Sens. 2020, 12, 3758 21 of 35
Figure 7. The spectral separability of all target classes as represented by CRAs across Landsat red (B1), green (B2), blue (B3), NIR (B4), SWIR1 (B5), and SWIR2 (B7)
bands. The set of bar and whisker plots shows the min, max, and interquartile range.
Remote Sens. 2020, 12, 3758 23 of 35
Figure 8. Example of index-specific overview of spectral values by land-cover class as represented by CRAs. MMRI is shown for each the historic and contemporary
HOT and LOT datasets. The bar-whisker plots represent the min, max, and interquartile range (IQR) for each class.
Remote Sens. 2020, 12, 3758 24 of 35
Table 7. Final Historic and Contemporary Validation Error Matrices, using validation CRAs pixels.
Figure 9. (Left) panels: Known mangrove loss hotspots (Figure 1). (Top left) shows loss, persistence,
and gain (LPG) from 2004–2008 to 2014–2018 in Rakhine State; (middle left) panel shows the Ayeyarwady
Region; (bottom left) shows Tanintharyi Region. (Right) Panel: contemporary high tide (HOT) image
composite, false colour (R: NIR G: SWIR B: Red) with boundaries of left panels highlighted in cyan.
While there was a substantial net loss based on GEEMMM results, the reported gain seems relatively
high. Portions of this likely reflect actual natural processes and increases in mangrove extent; however,
the overall gain estimate is likely an overestimation. Exaggerated gain likely reflects the desk-based process
of deriving CRAs. Clearly any classification is only as good as the examples used to calibrate the algorithm,
and a limitation of this pilot was no direct access to field observations or ground truth, and constrained
access to historical high spatial resolution satellite imagery. Disproportionate mangrove gain therefore likely
reflects an underrepresentation of lower stature, less dense mangroves in the historic classification, which in
turn exaggerates the amount of supposed gain (i.e., many of these areas were likely actually mangroves in
both dates). Extensive field work and ground verification is required to confirm.
The GEEMMM QAA was conducted for the contemporary map, then repeated for the historic
map. As part of the contemporary QAA, spot-checks were conducted over 108 sub-grid cells
across Myanmar (Figure 1). The mangrove class was generally well-represented; however, at-times
under-represented in favor of classes depicting portions of areas in the variable agricultural mosaic,
i.e., non-forest vegetation, and exposed/barren. In both the contemporary, and less so the historic map,
the agricultural mosaic was depicted as a patchwork of these two classes, on a pixel-by-pixel basis,
given the inherent variability within the seasonal window. This resulted in some confusion between
the two classes, and to some extent an under-representation of mangroves. In the contemporary map,
sparser mangroves at the ecosystem periphery were at-times misclassified as non-forest vegetation,
thereby under-representing mangrove and over-representing non-forest vegetation. Terrestrial forest
Remote Sens. 2020, 12, 3758 26 of 35
was also at-times over-represented, occasionally at the expense of actual mangrove areas. Overall,
the contemporary classification appeared to best represent Myanmar’s south (i.e., the Tanintharyi
coastline). The historic QAA, while not quite as comprehensive as the contemporary QAA (mainly due
to the absence of historic imagery in GEE), found the mangrove class to be generally well-represented,
though at-times over-represented at the expense of classes depicting the agricultural mosaic—an inverse
to the contemporary map. Some portions of the agricultural mosaic were also found to be misclassified
as terrestrial forest. As with the contemporary map, Myanmar’s southern Tanintharyi coastline seemed
best represented. Notably, most existing studies did not provide standard quantitative accuracy
assessments, and no existing studies went beyond these and further qualitatively assessed resulting
maps. While quantitative accuracy assessments should be a standard part of reporting, QAAs also
help further assess resulting maps and identify areas for improvement. As such, the GEEMMM goes
beyond standard accuracy—for which GEEMMM results were very high—and allows users to more
closely examine actual distributions and subsequently dynamics.
seasonal windows. Given the added benefits—especially once the archive spans 10+ years—future
versions of the GEEMMM should also offer the choice of Sentinel imagery to users as an option.
4. Conclusions
We present a new tool—the GEEMMM—for mapping and monitoring mangrove ecosystems.
By leveraging GEE, this new tool circumvents many traditional barriers to conventional methods. In addition,
it presents an internal, image-based approach for tidal calibration. The GEEMMM—including the well
commented source code—is available online and is ready to be used by practitioners anywhere mangrove
ecosystems exist; please see information in Supplementary Material Section on how to access the GEEMMM.
While operational, the GEEMMM is not without its limitations: the larger the area the more complex the
mapping task, particularly when it comes to creating optimal imagery composites within defined seasonal
windows. In addition, the upper limits of GEE and internet connectivity present a challenge in terms of the
time associated with and reliability of running the GEEMMM; however, when compared to the conventional
processing times associated with standalone workstations it remains much faster, and once a part of the
GEEMMM starts running it will continue to run even if the internet connection is lost. In any application,
the resulting maps and dynamics assessments will only ever be as good as the examples of target map
classes provided. Coastal managers will normally have such information available to them and GEEMMM
provides them with a framework through which to capitalizes on this local knowledge, rather than relying
on external datasets, which allow little to no customization, to map and monitor their mangroves.
The GEEMMM makes a significant and ready-to-go contribution toward accessible mangrove
mapping and monitoring. It also remains a living tool wherein non-profit users are encouraged by
the authors to make useful suggestions for modifications or additions, or modify the tool directly
themselves to meet their own customized needs. While piloting the GEEMMM for Myanmar is an
important first step, additional applications and tests are required, particularly for smaller areas of
interest, wherein the GEEMMM can help fill a critical sub-national mapping gap. The authors welcome
the opportunity to receive feedback from and work with users to more comprehensively assess the
tool and gauge areas for improvement. A series of in-person and online instructional materials will go
a long way toward ensuring the maximum and optimal utility of the GEEMMM. This first iteration of
the GEEMMM further sets the stage for a comparatively more automated and even more accessible
version to be deployable completely on mobile devices.
Supplementary Materials: The GEEMMM tool is freely available within the GitHub repository: https://github.
com/Blue-Ventures-Conservation/GEEMMM.
Author Contributions: The GEEMMM was conceived of by, T.G.J., S.R.G., L.G., C.F., and J.M.M.Y. Contributions
to the methodology were made by T.G.J., S.R.G., and C.F., with J.M.M.Y. developing the key tidal detection
methods. J.M.M.Y. wrote all of the code in GEE for the GEEMMM tool, with the work reviewed by C.F. The results
of this paper were validated by J.M.M.Y., T.G.J., S.R.G., C.F., and A.L. Formal analysis was performed by J.M.M.Y.,
T.G.J., and S.R.G., using the analysis tools developed by J.M.M.Y. Investigation for this work was conducted by
J.M.M.Y., T.G.J., S.R.G., C.F., and A.L., J.M.M.Y. performed all of the data curation for this paper. The original
manuscript writing was conducted by T.G.J. and J.M.M.Y.; with T.G.J. writing the introduction, discussion points,
and conclusion and J.M.M.Y. writing the bulk of the methods and results. All authors, T.G.J., J.M.M.Y., S.R.G., C.F.,
A.L., and, L.G. were involved in writing—review and editing. Visualizations were generated by J.M.M.Y., A.L.,
and S.R.G. The project was administrated and supervised by T.G.J. and L.G. All authors have read and agreed to
the published version of the manuscript.
Funding: This research was funded by Blue Ventures Conservation, with support from the UK Government’s
International Climate Fund, part of the UK commitment to developing countries to help them address the
challenges presented by climate change and benefit from the opportunities.
Acknowledgments: We thank the following authors of studies referenced in this paper: Ake Rosenqvist, of solo
Earth Observation (soloEO), for provision of and support regarding GMW data; J. Ronald Eastman and James
Toledano, of Clark Labs, for guidance regarding the Clark Labs Aquaculture dataset; Chandra Giri, of United States
Environmental Protection Agency, for provision of data and associated guidance; Edward L. Webb, of National
University Singapore, for data provision and guidance; and Ate Poortinga, of Spatial Informatics Group,
for provision of and guidance regarding SERVIR-Mekong data.
Conflicts of Interest: The authors declare no conflict of interest.
Remote Sens. 2020, 12, 3758 28 of 35
Appendix A
Table A1. Correlation matrices for the calculated spectral indices for both HOT and LOT historic and contemporary imagery extracted from the CRAs.
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