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Data Science Practical No 03

The document describes two examples of principal component analysis (PCA) on different datasets. In the first example, PCA is conducted on iris data to reduce its four dimensions to fewer principal components. The analysis shows the first principal component explains 72.96% of variance in the data. In the second example, PCA is performed on a student exam dataset with two variables, resulting in two principal components that cumulatively explain 100% of the variance in the data. Biplots and different plot types (lines, points) are used to visualize the PCA outputs.

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Satyavan Mestry
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64 views5 pages

Data Science Practical No 03

The document describes two examples of principal component analysis (PCA) on different datasets. In the first example, PCA is conducted on iris data to reduce its four dimensions to fewer principal components. The analysis shows the first principal component explains 72.96% of variance in the data. In the second example, PCA is performed on a student exam dataset with two variables, resulting in two principal components that cumulatively explain 100% of the variance in the data. Biplots and different plot types (lines, points) are used to visualize the PCA outputs.

Uploaded by

Satyavan Mestry
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© © All Rights Reserved
We take content rights seriously. If you suspect this is your content, claim it here.
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❖ Practical No 03) Practical of Principal Component Analysis.

➢ Example No 01):-
> iris
Sepal.Length Sepal.Width Petal.Length Petal.Width Species
1 5.1 3.5 1.4 0.2 setosa
2 4.9 3.0 1.4 0.2 setosa
| | | | | |
| | | | | |
| | | | | |
148 6.5 3.0 5.2 2.0 virginica
149 6.2 3.4 5.4 2.3 virginica
150 5.9 3.0 5.1 1.8 virginica

>
> Data<-iris[1:4]
> Data
Sepal.Length Sepal.Width Petal.Length Petal.Width
1 5.1 3.5 1.4 0.2
2 4.9 3.0 1.4 0.2
3 4.7 3.2 1.3 0.2
| | | | |
| | | | |
| | | | |
148 6.5 3.0 5.2 2.0
149 6.2 3.4 5.4 2.3
150 5.9 3.0 5.1 1.8
> Data1<-iris[,-5]
> Data1
Sepal.Length Sepal.Width Petal.Length Petal.Width
1 5.1 3.5 1.4 0.2
2 4.9 3.0 1.4 0.2

> PC<-princomp(Data,cor = TRUE,scores = TRUE)


> PC
Call:
princomp(x = Data, cor = TRUE, scores = TRUE)

Standard deviations:
Comp.1 Comp.2 Comp.3 Comp.4
1.7083611 0.9560494 0.3830886 0.1439265

4 variables and 150 observations.


> summary(PC)
Importance of components:
Comp.1 Comp.2 Comp.3 Comp.4
Standard deviation 1.7083611 0.9560494 0.38308860 0.143926497
Proportion of Variance 0.7296245 0.2285076 0.03668922 0.005178709
Cumulative Proportion 0.7296245 0.9581321 0.99482129 1.000000000
> plot(PC)

➢ Output:
> plot(PC)
> plot(PC,type="l")

>
➢ Output:

> biplot(PC)

>
➢ Output:
➢ Example No:02):-
> MyData<-read.csv("E:\\Satyavan\\TYCS Practical\\Sem VI\\Data Scienc
e\\Principal Component Analysis.csv")
> MyData
Exam.No X12th.Percentage X10th.Percentage Performance
1 1 48 62 Poor
2 2 55 67 Average
3 3 56 66 Average
4 4 60 70 Moderate
5 5 85 63 Excellent
6 6 75 68 Satisfactory
| | | | |
| | | | |
| | | | |
37 37 52 67 Average
38 38 76 66 Satisfactory
39 39 96 63 Outstanding

>
> MData<-MyData[2:3]
> MData
X12th.Percentage X10th.Percentage
1 48 62
2 55 67
3 56 66
| | |
| | |
| | |
37 52 67
38 76 66
39 96 63

>
> PC<-princomp(MData,cor=TRUE,scores = TRUE)
> PC
Call:
princomp(x = MData, cor = TRUE, scores = TRUE)

Standard deviations:
Comp.1 Comp.2
1.030286 0.968768

2 variables and 39 observations.


> summary(PC)
Importance of components:
Comp.1 Comp.2
Standard deviation 1.0302856 0.9687680
Proportion of Variance 0.5307442 0.4692558
Cumulative Proportion 0.5307442 1.0000000
> plot(PC)

➢ Output:

> plot(PC,type="l")
>
➢ Output:
> biplot(PC)

➢ Output:

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