Biology Module Handbook Updated

Updated on 30 October 2021
MODULE HANDBOOK
Bachelor Programme in Biology
Universitas Brawijaya
Building Up Noble Future
MALANG-INDONESIA 2021
TABLE OF CONTENT
TABLE OF CONTENT ................................................................................................................... i

INTENDED LEARNING OUTCOMES (ILOs)............................................................................. v
COMPULSORY COURSES .......................................................................................................... vi
General Biology ............................................................................................................................ 1
Basic Physics ................................................................................................................................ 4
Practice in Basic Physics ............................................................................................................... 6
Basic Chemistry ............................................................................................................................ 8
Practice in Basic Chemistry ......................................................................................................... 10
Basic Biocomputation ................................................................................................................. 12
Civilization ................................................................................................................................. 15
English Language ........................................................................................................................ 18
Method of Bioresearch and Scientific Writing I ........................................................................... 20
Religion - Islam........................................................................................................................... 23
Religion - Catholicism................................................................................................................. 26
Religion - Protestantism .............................................................................................................. 29
Religion - Buddhism ................................................................................................................... 31
Biosystematics ............................................................................................................................ 34
Diversity of Flora ........................................................................................................................ 37
Practice in Diversity of Flora ....................................................................................................... 40
Diversity of Fauna ....................................................................................................................... 43
Practice in Diversity of Fauna...................................................................................................... 46
Plant Structure and Development................................................................................................. 49
Practice in Plant Structure and Development ............................................................................... 52
Indonesian Language................................................................................................................... 55
Pancasila ..................................................................................................................................... 58
Animal Histology ........................................................................................................................ 61
Biostatistics ................................................................................................................................. 64
Animal Anatomy and Physiology ................................................................................................ 67
Biochemistry and Instrumentation ............................................................................................... 71
Cell Biology ................................................................................................................................ 75
Ecology....................................................................................................................................... 78
Genetics ...................................................................................................................................... 81
General Microbiology ................................................................................................................. 84
i
Plant Physiology ......................................................................................................................... 87
Biodiversity Conservation ........................................................................................................... 90
Entrepreneurship ......................................................................................................................... 94
Introduction to Biotechnology ..................................................................................................... 97
Community Service ................................................................................................................... 100
Molecular Biology .................................................................................................................... 103
Practice in Molecular Biology ................................................................................................... 107
Animal Embryology .................................................................................................................. 110
Microtechnique ......................................................................................................................... 113
Method of Bioresearch and Scientific Writing II ........................................................................ 116
Biological Research Design ....................................................................................................... 119
Basic Technique of Cell and Tissue Culture............................................................................... 122
Evolution .................................................................................................................................. 125
Internship .................................................................................................................................. 128
Bachelor’s Thesis Proposal Seminar .......................................................................................... 130
Research Result Seminar ........................................................................................................... 133
Bachelor’s Thesis ...................................................................................................................... 136
ELECTIVE COURSES ...................................................................................................................... 139
FIELD OF INTEREST IN BOTANY ..................................................................................................... 140
Ethnobotany .............................................................................................................................. 141
Plant Tissue Culture .................................................................................................................. 144
Phytohormone ........................................................................................................................... 147
Medicinal Herb ......................................................................................................................... 150
Plant Identification Technique ................................................................................................... 153
Radiation Biology ..................................................................................................................... 157
Biodiversity Survey and Data Management ............................................................................... 160
Plant Biotechnology .................................................................................................................. 163
Plant Reproductive Biology ....................................................................................................... 166
Ecotourism ................................................................................................................................ 169
Horticulture Biology ................................................................................................................. 172
Biomolecular Analysis Technique ............................................................................................. 175
Molecular Fingerprint................................................................................................................ 179
FIELD OF INTEREST IN ZOOLOGY .................................................................................................. 182
Animal Cell and Tissue Culture ................................................................................................. 183
Ornithology ............................................................................................................................... 186
Ichtiology .................................................................................................................................. 189
Herpetology .............................................................................................................................. 192
ii
Animal Reproductive Biology ................................................................................................... 195
Ecotoxicology ........................................................................................................................... 198
Histopathology .......................................................................................................................... 201
Ecotourism ................................................................................................................................ 204
FIELD OF INTEREST IN ECOLOGY .................................................................................................. 214
Biological Control ..................................................................................................................... 215
Aquatic Ecosystem Management ............................................................................................... 218
Biodiversity Survey and Data Management ............................................................................... 221
Computational Ecology ............................................................................................................. 224
Social Ecology .......................................................................................................................... 227
Ecotourism ................................................................................................................................ 229
Ecotoxicology ........................................................................................................................... 232
FIELD OF INTEREST IN MICROBIOLOGY ......................................................................................... 235
Food Microbiology.................................................................................................................... 236
Virology.................................................................................................................................... 239
Medical Microbiology ............................................................................................................... 242
Environmental Microbiology ..................................................................................................... 245
Microbial Diversity ................................................................................................................... 248
Industrial Microbiology ............................................................................................................. 251
Agricultural Microbiology ......................................................................................................... 254
Bioremediation.......................................................................................................................... 257
FIELD OF INTEREST IN BIOMEDIC .................................................................................................. 263
Immunology.............................................................................................................................. 264
Human Genetics ........................................................................................................................ 267
Virology.................................................................................................................................... 270
Radiation Biology ..................................................................................................................... 273
Medical Microbiology ............................................................................................................... 276
Vaccine Engineering ................................................................................................................. 279
Bioinformatics .......................................................................................................................... 282
Cancer Biology ......................................................................................................................... 285
Science Perspective of Traditional Medicine.............................................................................. 287
Histopathology .......................................................................................................................... 289
Parasitology .............................................................................................................................. 295
iii
Microscopic Technique ............................................................................................................. 297
NON-FIELD OF INTEREST ............................................................................................................... 304
Bioentrepreneur......................................................................................................................... 305
Population Genetics................................................................................................................... 308
Special Topics Supporting Thesis .............................................................................................. 311
ENRICHMENT PROGRAM ............................................................................................................... 313
Enrichment Program Information .............................................................................................. 314
Attitude, Ethics, and Leadership ................................................................................................ 315
Research Internship ................................................................................................................... 315
Business Initiation ..................................................................................................................... 315
Community Development .......................................................................................................... 315
Industrial Internship .................................................................................................................. 315
Research Internship Abroad....................................................................................................... 315
Research Management .............................................................................................................. 315
Business Management ............................................................................................................... 315
Community Development Appraisal .......................................................................................... 315
Research and Development ....................................................................................................... 315
Scientific Communication ......................................................................................................... 315
Business Communication .......................................................................................................... 315
Community Communication...................................................................................................... 315
iv
INTENDED LEARNING OUTCOMES (ILOs)
ILO 1. Able to demonstrate academic integrity and the ability to develop themselves through lifelong
learning.
ILO 2. Able to understand the biological science principles comprehensively and its supporting basic
sciences, as well as keep updating the modern biology development.
ILO 3. Able to understand the methodology of biological science and its application in a bio-
conservation perspective.
ILO 4. Able to work independently in the laboratory and the field in compliance with the standard
methodology of biology concerning bioethics and safety.
ILO 5. Able to solve problems based on scientific methods by applying biological sciences, biological
analysis methods and technological applications.
ILO 6. Able to demonstrate good communication skills in delivering scientific information both in
Indonesian and English.
ILO 7. Have a capacity for teamwork with respecting biodiversity.
ILO 8. Able to understand and has basic entrepreneurship characters relevant to biology.
v
COMPULSORY COURSES
vi
Module Handbook
General Biology
Module Name: General Biology

Module Level: Bachelor
Abbreviation, if applicable: MAB61001
Sub-heading, if applicable: -
Courses included in the
-
module, if applicable:
Semester/term: 1st semester
Person responsible for the
Prof. Sutiman B. Sumitro, S.U., D.Sc.
module:
Lecturer(s): 1. Prof. Sutiman B. Sumitro, SU., DSc.
2. Dr. Suharjono, MS.
3. Dr. Endang Arisoesilaningsih, M.S.
4. Prof. Dr. Ir. Estri Laras Arumaningtyas, MSc.St.
5. Dr. Jati Batoro, M.Si
6. Dr. Sri Widyarti, M.Si.
7. Drs. Sofy Permana, M.Sc, D.Sc.
Language: Indonesian
Relation to curriculum
Programme Mode Semester
Bachelor Programme
Compulsory Odd
in Biology
Type of teaching, contact
hours: Contact hours and class size separately for each teaching method:
lecture, lesson, practical, project, seminar, etc.
Contact hours per

Teaching method Class size
week
Lectures 1.7 40
Exercise (structured
assignment &
4.0 40
independent
learning/ self-study)
Laboratory practice 2.8 40
Workload: (Estimated) workload, divided into contact hours (lecture, exercise,
laboratory session, etc.) and private/self-study, including
examination preparation, specified in hours
Contact hours Private/self- Semester

ECTS
per week study per week workload
4.5 4.0 136 h 4.5
Credit point 3 credit units (SCU)
Requirement according to the A student must have attended at least 80% of the lectures to sit in the
examination regulations exams. In order to pass the course, student must obtain a minimal score of
55%.
Recommended prerequisites -
1
Module objective/ intended Intended learning outcomes (ILO) corresponding to this module:
learning outcomes
ILO 2. Able to understand the biological science principles
comprehensively and its supporting basic sciences, as well as keep
updating the modern biology development.
ILO 6. Able to demonstrate good communication skills in delivering

scientific information both in Indonesian and English.
Course learning outcomes (CLO) after completing this module:
CLO 1. Understand the basic science supporting Biology and success life
skills (ILO 2)
CLO 2. Understand the structure, function and organization of life (ILO 2).
CLO 3. Skilled in using appropriate methods to solve simple problems in

the field of biology (ILO 2)
CLO 4. Able to communicate in Indonesian and English (ILO 6).

Content 1. Overview on Biology
2. The concept of modern biology and the relevance of learning biology
today
3. Widening of competencies, role challenges and success of Biology
graduates in the global era
4. The role of biology in nutrigenomics
5. Biocreativity and Bio-entrepreneur
6. Biology in health sciences
7. The role of biology in the world of animal husbandry
8. The role of microbiology in the benefit of society
9. The role of biology in ecological conservation
10. The role of biology in genetic conservation
11. Exploration of plants and their use for various purposes
12. The role of Biology undergraduates in the field of health sciences
13. Application of plant engineering for industry and agriculture
Study and examination Form of examination in lectures:
requirements and forms of  Quiz
examination  Small group presentation
 Mid and Final Test
Form of examination in laboratory practice:
 Lab report
 Pre/post-test
 Small group presentation
 Final practice exam
Class score (CS): Paper project (10%), quiz (10%), presentation

(10%), mid exam (35%), and final exam (35%)
Practice score (PS): Report (30%), pre/post-test (15%), presentation
(15%), and final practice exam (40%)
Final score: {2 (CS) + 1 (PS)}/3
Media employed LCD, laptop, google classroom, video conference (zoom/gmeet).
2
Reading list  Madigan et al., 2019, Brock Biology of Microorganisms 15th edition,
Pearson Education.
 Reece, JB, Urry, LA, Cain, ML & Wasserman, SA 2019, Campbell
biology, 10th ed, Pearson, Boston.
 Reece, JB, Urry, LA, Cain, ML, Wasserman, SA & Minorsky, PV
2017, Campbell biology in focus, Pearson, Boston.
 Starr, C, Taggart, R, Evers, C & Lisa, S 2018, Biology: The unity and
diversity of life, 15th ed, Cengage Learning, Boston.
3
Module Handbook
Basic Physics
Module Name: Basic Physics

Abbreviation, if applicable: MAP61190
-
Person responsible for the Ir. Wiyono, M.Si
module:
Lecturer(s): 1. Drs. Wasis, M.AB
2. Muh. Gufron, S.Si., M.Si.
3. Triswantoro Putro, S.Si., M.Si
Bachelor Programme
Compulsory Odd
in Biology
Contact hours per

week
Lectures 1.7 40
assignment &
4.0 40
independent
Laboratory practice 0 -

ECTS
1.7 4.0 90.7 h 3
55%.
Intended learning outcomes (ILO) corresponding to this module:
4
Module objective/ intended ILO 2. Able to understand the biological science principles
learning outcomes comprehensively and its supporting basic sciences, as well as keep

CLO 1. Understand the basic concepts of Physics and their relevance to
understanding Biological phenomena and following current science and
technology advances.
Content 1. Basic concepts of physics

2. Unit and Quantity
3. Kinematics I
4. Kinematics II
5. Newtonian Dynamics, Rotational Dynamics
6. Impulse and Momentum
7. Effort and Energy
8. Static Fluid
9. Dynamic Fluids
10. Vibration, Swing in harmony
11. Mechanical Wave
12. Electromagnetic Waves
13. Geometric Optics
14. Shadows on optics
requirements and forms of  Assignment
examination  Quiz
 Mid and final exam
Final score: Assignment (20%), Quiz (10%), mid exam (35%) and
final exam (35%).
Media employed LCD, laptop, google classroom, video conference (zoom/gmeet)
Reading list  Mansfield, M.M. and O'sullivan, C., 2020. Understanding physics.
John Wiley & Sons.
 Resnick, R., Halliday, D. and Walker, J., 2021. Fundamentals of
physics. John Wiley & Sons.
5
Module Handbook
Practice in Basic Physics
Module Name: Practice in Basic Physics

Abbreviation, if applicable: MAP61191
-
Person responsible for the Dr. rer.nat. Abdurrouf, S.Si., M.Si
module:
Lecturer(s): -
Bachelor Programme
Compulsory Odd
in Biology
Contact hours per

week
Lectures - -
assignment &
- -
independent

ECTS
2.8 - 45.3 h 1.5
55%.
learning outcomes
6
CLO 1. Skilled in the basic concepts of Physics and their relevance to
Content 1. Kinematics
2. Newtonian Dynamics, Rotational Dynamics
3. Impulse and Momentum
4. Effort and Energy
5. Static Fluid
6. Dynamic Fluids
7. Mechanical Wave
8. Electromagnetic Waves
9. Geometric Optics
10. Shadows on optics
Study and examination Form of examination in laboratory practice:
requirements and forms of  Report
examination  Pre/post-test
 Attitude
 Final test
Final score: Report (30%) + Pre/post-test (15%) + Attitude (10%) +
final test (45%).
Reading list  Mansfield, M.M. and O'sullivan, C., 2020. Understanding physics.
John Wiley & Sons.
 Resnick, R., Halliday, D. and Walker, J., 2021. Fundamentals of
physics. John Wiley & Sons.
7
Module Handbook
Basic Chemistry
Module Name: Basic Chemistry

Abbreviation, if applicable: MAK61004
-
Person responsible for the Drs. Sutrisno, M.Si
module:
Lecturer(s): 1. Suratmo, M.Sc
2. Dra. Anna Roosdiana, M.App.Sc.
3. M. Farid Rahman, S.Si., M.Si.
4. Prof. Dr. Chanif Mahdi, MS
Bachelor Programme
Compulsory Odd
in Biology
Contact hours per

week
Lectures 1.7 40
assignment &
4.0 40
independent

ECTS
1.7 4.0 90.7 h 3
55%.
8

CLO 1. Understand the basic concepts of Chemistry and their relevance to
Content 1. Introduction: Chemistry in life

2. Atoms, Molecules, Ions and Chemical Bonds
3. Chemical Reactions and Equations
4. Stoichiometry
5. Solution and Concentration
6. Acids and Bases
7. Thermodynamics
8. Chemical Kinetics
9. Organic Chemistry
10. Functional Group
Final score: Assignment (20%), Quiz (10%), mid exam (35%) and
final exam (35%).
Reading list  Brescia, F., 2012. Fundamentals of Chemistry: A Modern Introduction
(1966). Elsevier.
 Ebbing, D. and Gammon, S.D., 2016. General chemistry. Cengage
Learning.
 Oxtoby, D.W., Gillis, H.P. and Butler, L.J., 2015. Principles of modern
chemistry. Cengage learning.
 Petrucci, R.H., Harwood, W.S., Herring, G.E., Madura, J. 2007.
General Chemistry: Principles and Modern Application. Prentice Hall.
9
Module Handbook
Practice in Basic Chemistry
Module Name: Practice in Basic Chemistry
-
Person responsible for the Yuniar Ponco Prananto, S.Si., M.Sc., Ph.D
module:
Lecturer(s): -
Bachelor Programme
Compulsory Odd
in Biology
Contact hours per

week
Lectures - -
assignment &
- -
independent

ECTS
2.8 - 45.3 h 1.5
Credit point 1 credit unit (SCU)
55%.
learning outcomes
10
CLO 1. Skilled in the basic concepts of Chemisty and their relevance to
Content 1. Introduction of chemical tools and materials

2. Solution preparation
3. Acid level determination
4. Separation of solids and liquids
5. Identification of simple chemical reactions
6. Buffer solution preparation
7. Distillation of binary solutions
8. Colorimetric analysis
9. Electrolyte solutions

 Attitude
 Final test
Final score: Report (30%) + Pre/post-test (15%) + Attitude (10%) +
final test (45%).
Reading list  Brescia, F., 2012. Fundamentals of Chemistry: A Modern Introduction
(1966). Elsevier.
 Ebbing, D. and Gammon, S.D., 2016. General chemistry. Cengage
Learning.
 Oxtoby, D.W., Gillis, H.P. and Butler, L.J., 2015. Principles of modern
chemistry. Cengage learning.
 Petrucci, R.H., Harwood, W.S., Herring, G.E., Madura, J. 2007.
General Chemistry: Principles and Modern Application. Prentice Hall.
11
Module Handbook
Basic Biocomputation
Module Name: Basic Biocomputation

-
Irfan Mustafa, S.Si., M.Si., Ph.D
module:
Lecturer(s): 1. Irfan Mustafa, S.Si., M.Si., Ph.D
2. Dian Siswanto, S.Si., M.Sc., M.Si., Ph.D
3. Viky Vidayanti, S.Si., M.Si
Bachelor Programme
Compulsory Odd
in Biology
Contact hours per

week
Lectures 1.7 40
assignment &
4.0 40
independent

ECTS
4.5 4.0 136 h 4.5
55%.
learning outcomes
12
ILO 3. Able to understand the methodology of biological science and

its application in a bio-conservation perspective.
ILO 4. Able to work independently in the laboratory and the field in

compliance with the standard methodology of biology concerning
bioethics and safety.
CLO 1. Able to explain and understand the application of computational

science in the field of Biology (ILO 2)
CLO 2. Able to explain and understand simple programming principles in

Python (ILO 3)
CLO 3. Able to explain and perform various computer applications in the

field of Biology (ILO 4)
Content 1. Computer and operating system
2. Biocomputing and Big Data
3. Python and BioPython
4. Algorithm
5. Computer applications in biology
6. Biological database
7. Introduction to SPSS and RStudio
8. MS Excel application for biocomputing
9. Web-based biology application
10. Applications for presentations
11. Practice simple programming with Python
examination  Assignment
 Lab report
 Pre/post-test
Class score (CS): Quiz (15%) + Assignment (15%), mid exam (35%),
and final exam (35%)
Practice score (PS): Report (30%) + pre/post-test (25%) + final
practice exam (45%)
Reading list  Efendi, A., 2017. Biostatistika dengan R dan MS Excel. UB Press.
Malang.
 Morgan, G.A. Leech, N.L. Gloeckner, G.W. Barret, K.C. 2011. IBM
SPSS for Introductory Statistics: Use and Interpretation. Routledge,
NY, USA.
13
 Pardalos, P.M. and Príncipe, J.C. eds., 2013. Biocomputing (Vol. 1).
Springer Science & Business Media.
 Zelle, J.M. 2004. Phyton Programming: An Introduction to Computer
Science. Franklin, Beedle and Associate Inc. Oregon, USA.
14
Module Handbook
Civilization
Module Name: Civilization

Abbreviation, if applicable: MPK60006
-
Person responsible for the Triya Indra R., S.H., M.H.
module:
Lecturer(s): 1. Triya Indra R., S.H., M.H.
2. Prisca Kiki W., S.Pd., M.Sc.
3. Galieh Damayanti, S.H., M.H.
4. Dr. Mohamad Anas, M.Phil.
5. Emi Setyaningsih, M.Phil.
6. Destriana Saraswati, M.Phil.
7. Albar Adetary Hasibuan, M.Phil.
Bachelor Programme
Compulsory Odd
in Biology
Contact hours per

week
Lectures 1.7 40
assignment &
4.0 40
independent

ECTS
1.7 4.0 90.7 h 3
55%.
15
Module objective/ intended
learning outcomes ILO 1. Able to demonstrate academic integrity and the ability to
develop themselves through lifelong learning.
CLO1. Able to understand the nature of civic education in developing the

full capabilities of undergraduates or professionals and linking the values of
Pancasila with the subject matter in the subject of Citizenship Education
CLO 2. Able to interpret the concept of the Unitary State of the Republic of
Indonesia and identify and recognize the uniqueness of the Indonesian
legal state which is rooted in the values of Pancasila
CLO 3. Able to understand the supremacy of the constitution and the

peculiarities of the 1945 Constitution of the Republic of Indonesia which is
based on the values of Pancasila and to sort out constitutional and
unconstitutional behaviour in the life of the nation and state
CLO 4. Able to understand, identify, and maintain national identity from

popular culture in the current of globalization
CLO 5. Able to build awareness and believe in the importance of

involvement or participation in the practice of Pancasila democracy
CLO 6. Able to examine Pancasila as the philosophical foundation of

Human Rights in the State of Indonesia and compromise between human
rights and obligations in the life of the nation and state.
CLO 7. Able to understand the concept of geopolitics and geopolitics in

Indonesia as well as classifying the potential diversity of natural resources
and human resources in the concept of regional autonomy based on the
Archipelago.
CLO 8. Able to show a sense of love for the homeland, have nationalism,
and a sense of responsibility answer to the state and nation.
Content 1. Introduction and Urgency of Citizenship Education
2. Indonesian State and Citizens
3. Constitution and the 1945 Constitution of the Republic of
Indonesia
4. National Identity
5. Pancasila Democracy
6. Human Rights
7. Archipelago Insight
8. National Resilience
 Class participative (during discussion)
16
Final score: Quiz (10%) + Assignment (15%) + Class participative
(15%) + mid exam (30%) + final exam (30%).
Reading list  Tim Dosen Pendidikan Kewarganegaraan Universitas Brawijaya,
2019, Buku Ajar Pendidikan Kewarganegaraan
 Kementerian Riset, Teknologi dan Pendidikan Tinggi, 2016,
Pendidikan Kewarganegaraan untuk Perguruan Tinggi Jimly
Asshiddiqie, 2010. Konstitusi dan Konstitusionalisme Indonesia.
Jakarta: Sinar Grafika Jimly Asshiddiqie, 2014. Pengantar Ilmu
Hukum Tata Negara. Jakarta: PT Raja Grafindo Persada
 Mahfud MD, 2010, Politik di Indonesia, Jakarta: Rajawali Press
 Muhamad Erwin, 2010. Pendidikan Kewarganegaraan Republik
Indonesia. Bandung:
 Kaelan, 2013, Negara Kebangsaan Pancasila, Yogyakarta:
Paradigma
 Yudi Latief, 2011, Negara Paripurna: Historisitas, Rasionalitas, dan
Aktualitas Pancasila, Jakarta: Gramedia
 Yudi Latief, 2014. Mata Air Keteladanan: Pancasila dalam Perbuatan,
Bandung: Mizan
 Suseno, Magnis, 2003, Etika Politik, Prinsip-prinsip Moral Dasar
Kenegaraan Modern, Jakarta: Gramedia
17
Module Handbook
English Language
Module Name: English Language
Abbreviation, if applicable: UBU60005
-
Person responsible for the Emy Rahmawati Isfatin K, S.S., M.Hum
module:
Lecturer(s): 1. Emy Rahmawati Isfatin K, S.S., M.Hum
2. Muh. Suluh Jati, S.S., M.A.
Language: Indonesian and English
Bachelor Programme
Compulsory Odd
in Biology
Contact hours per

week
Lectures 1.7 40
assignment &
4.0 40
independent

ECTS
1.7 4.0 90.7 h 3
55%.
learning outcomes
18
CLO 1. Able to remind the basics of English grammar.
CLO 2. Able to understand English reading which is related to the

development of academic abilities.
CLO 3. Able to write several types of paragraphs and present academic

presentations.
Content 1. Introduction to the course
2. Introduction to academic English P.O.S, S-V Agreement
3. Brainstorming: Present tense
4. Identifying paragraph: Past tense
5. Introduction to academic English I: Future tense
6. Introduction to academic English I: Question and conditional
7. Descriptive writing: Sentences writing
8. Compare contrast writing: Active passive sentences
9. Academic writing: Argumentative
10. Article review: Language focus (Identifying P.O.S)
11. Article review: Language focus (Identifying present tense)
12. Article review: Language focus (Identifying past tense)
13. Article review: Language focus (Identifying future tense)
14. Article review: Language focus (Identifying active and passive)
 Presentation
 Mid and Final Exam
Final score: Quiz (15%) + Assignment (20%) + Presentation (10%)
+ Mid exam (25%) + Final exam (30%).
Reading list  Alexander,L.G.(2003).LongmanEnglishGrammar.
 Altenberg, E. & Vago, R.M. (2010). Understanding The Basic
English Grammar.
 Eggenschwiller, J & Biggs, E.D. (2001). CliffsQuickReviewTM
Writing: Grammar,
Usage, and Style.
 Lester, M. (2008). ESL Grammar: a Handbook for Intermediate and
Advanced ESL Students.
 Sargeant, H. (2007). Basic English Grammar for English Language
Learners.
19
Module Handbook
Method of Bioresearch and Scientific Writing I
Module Name: Method of Bioresearch and Scientific Writing I

-
Person responsible for the Dr. Suharjono, M.S
module:
Lecturer(s): 1. Dr. Suharjono, M.S.
2. Nia Kurniawan, S.Si., M.P., D.Sc.
3. Tri Ardyati, M.Agr., Ph.D
4. Rodiyati Azrianingsih, S.Si., M.Sc., Ph.D
5. Prof. Muhaimin Rifa’i, S.Si., Ph.D. Med.Sc.
Bachelor Programme
Compulsory Odd
in Biology
Contact hours per

week
Lectures 1.7 40
assignment &
4.0 40
independent

ECTS
1.7 4.0 90.7 h 3
55%.
20
Module objective/ intended ILO 1. Able to demonstrate academic integrity and the ability to
learning outcomes develop themselves through lifelong learning.

CLO 1. Mastering theoretical concepts or their applications in the scope of

one field (intradisciplinary).
CLO 2. Able to design and present alternatives.
CLO 3. Mastering instruments related to the field of biological studies they

are dealing with.
CLO 4. Have responsibility in participating in lecture activities and

completing assignments for one semester.
CLO 5. Able to provide instructions/input in a work team.

Content 1. The nature of science, the development of science &
technology and research ethics in general
2. Biology as an empirical science of scientific and non-scientific
truths
3. Techniques for finding references from the internet, and
making reviews, summaries (resumes) of journals and papers
4. Systematics of practicum reports; introduction (background,
problem formulation, objectives), literature review (techniques
for selecting, reading, and referring to library materials) and
bibliography
5. Preparation of PKM MABA (new student creativity program)
proposals
6. Writing method, presentation (pictures, tables, guide reader)
and interpretation of practicum results and discussion,
conclusions and suggestions
7. Structured assignment presentation strategies (choice of
topics/journals, compiling summaries, and power points) and
practice reports
8. Prepare a practice report in form of poster
9. Preparation of PKM MABA (new student creativity program)
proposals

 Small Group Presentation
Final score: Quiz (10%) + Assignment
(15%) + Presentation (15%) + mid exam (30%) + final exam (30%).
21
Reading list  Howard, K and Sharp, J.A., J. Peters dan K. Howard. 2002. The
Management of a Student Research Project. Gower Publ. Cambridge.
 Kemendikbud, 2020. Buku Pedoman Program Kreativitas Mahasiswa:
Pedoman Umum. Direktorat Belmawa.
 Matthews, J.R. dan R.W. Matthews. 2008. Successful Scientific
Writing. Cambridge Univ. Press. Cambridge;
 Nazir, M. 1988. Metode Penelitian. Ghalia Indonesia, Jakarta;
 Routledge, P. 2001. Science and technical writing: a manual of style.
Routledge. New York;
 Suriasumantri, J.S. 1981. Ilmu dalam Perspektif. Gramedia. Jakarta.
22
Module Handbook
Religion - Islam
Module Name: Religion - Islam

-
Person responsible for the Prof. Dr. Thohir luth, MA
module:
Lecturer(s): 1. Prof. Dr. Thohir luth, MA
2. Dr. Nur Chanifah, S.Pd.I, M.Pd.I
3. Drs. Khusnul Fatoni, M.Ag
4. Drs. Abdul Halim, M.Ag
5. Arif Mustapa, M.Si
6. In’amul Wafi, M.Ed.
7. Mokhamad Rohma Rozikin, M.Pd
8. Khalid Rahman, M.Pd.I.
9. Siti Rohmah, SH.I, MH.I
Bachelor Programme
Compulsory Odd
in Biology
Contact hours per

week
Lectures 1.7 40
assignment &
4.0 40
independent

ECTS
1.7 4.0 90.7 h 3
55%.
23
learning outcomes
ILO 1. Able to demonstrate academic integrity and the ability to
CLO 1. Have faith and fear Allah SWT.
CLO 2. Have good morals (honest, trustworthy, hard work,

responsibility, and discipline).
CLO 3. Able to develop correct and critical thinking and reasoning in

understanding various actual problems from an Islamic perspective.
CLO 4. Able to respect the rights of individuals and groups by

providing freedom of expression with responsibility.
CLO 5. Able to apply morality in everyday life, both on campus,

family, and society.
CLO 6. Able to build harmonious relationships and mutual respect in

diversity.
Content 1. Introduction: The Urgency of Islam in Higher Education
2. Integration of Faith, Islam and Ihsan in Forming Whole
Humanity
3. Implementation of Islamic Aqeedah in Realizing Happiness in
the World and the Hereafter 4. Islam Rahmatan Lil 'Alamin
4. The Role of Mosques in Building Human Civilization
5. Islamic Law in Indonesian Context
6. Morals and Modern Problems
7. Islam and the Challenge of Radicalism
8. The Qur'anic Paradigm in Facing the Development of Modern
Science and Technology 10. Corruption and its Prevention
from an Islamic Perspective
9. Islamic Economic and Administrative System
10. Politics and Love for the Homeland in an Islamic Perspective.
(15%) + Class participation (15%) + mid exam (30%) + final exam (30%).
Reading list  Thohir Luth, dkk. Buku Ajar Pandidikan Agama Islam, PMPK UB,
2019
 Direktorat Belmawa Dikti, Buku Ajar MKWU Pendidikan Agama Islam,
Ditjen Belmawa, 2016.
24
 Thohir Luth, dkk. Buku Daras Pendidikan Agama Islam, Malang,
Universitas Brawijaya, 2012.
25
Module Handbook
Religion - Catholicism
Module Name: Religion - Catholicism

-
Person responsible for the Donatus Maria Triman Adi Wibowo, Ph.D
module:
Lecturer(s): Donatus Maria Triman Adi Wibowo, Ph.D
Bachelor Programme
Compulsory Odd
in Biology
hours: Contact hours and class size separately for each teaching method: lecture,
lesson, practical, project, seminar, etc.
Contact hours per

week
Lectures 1.7 40
assignment &
4.0 40
independent learning/
self-study)
laboratory session, etc.) and private/self-study, including examination
preparation, specified in hours

ECTS
1.7 4.0 90.7 h 3
55%.
learning outcomes
ILO 1. Able to demonstrate academic integrity and the ability to develop
themselves through lifelong learning.
26
CLO 1. Able to understand themselves in terms of their origins and goals in

life as the image of God who is religious and has faith in Christ and as a
Church sent to continue the work of salvation in society.
CLO 2. Able to communicate well, be independent, and tolerant in

developing a harmonious life between religious communities.
CLO 3. Able to become Catholic students with conscience who are

sensitive to their environmental situation.
Content 1. INTRODUCTION AND LEARNING CONTRACT.
a. The Urgency of Catholic Religious Education.
b. Explanation of Syllabus and RPS.
c. Learning Contract.
2. HUMANS
a. Basic Problems of Human Life.
b. Noble Human Dignity.
3. RELIGION
a. The Relationship between Revelation, Faith and Religion.
b. The Meaning and Function of Religion.
c. Religious Motivation.
d. Religious plurality.
e. Inter-religious harmony.
4. JESUS CHRIST.
a. Sources of the Catholic Faith: Scripture and Tradition.
b. The mystery of the Triune God.
c. Faith in Jesus Christ.
d. Mission to Proclaim Jesus Christ.
5. CHURCH
a. The Nature of the Church.
b. Church Functions.
c. Church History.
6. LAW AND THE SACRAMENTS.
a. Law and the Church.
b. Ecclesiastical sacramentality.
7. MORAL.
a. Human calling.
b. Moral and Ethics of Christian Life.
8. COMMUNITY FAITH.
a. Church Social Teaching.
b. The challenges and opportunities of life of faith..
c. Capita Selecta: Environment, Gender, HIV/AIDS, Human
Rights, Culture, Politics.
 Class participation
27
(15%) + Class participation (15%) + mid exam (30%) + final exam (30%).
Reading list  ALKITAB :Kej 2,1-7; Mat 5,1-2.
 Franz Dahler, Pijar Peradaban Manusia, Yogyakarta, Kanisius.
 Leahy Louis, Siapakah Manusia, Yogyakarta, Kanisius.
 PausYohanes Paulus II, Fides et Ratio, Jakarta, Dokpen KWI
 Paus Benediktus XVI, Hubungana ntara Ilmu Pengetahuan dan
Kebenaran, PradicamusVol VIII.
28
Module Handbook
Religion - Protestantism
Module Name: Religion - Protestantism

-
Person responsible for the Dr. Roike Roujer Kowal. S.Th., M.Th., Ma
module:
Lecturer(s): Dr. Roike Roujer Kowal. S.Th., M.Th., Ma
Bachelor Programme
Compulsory Odd
in Biology
Contact hours per

week
Lectures 1.7 40
assignment &
4.0 40
independent

ECTS
1.7 4.0 90.7 h 3
55%.
learning outcomes
29
CLO 1. Able to understand the knowledge of Christian values that

come from understanding God and human nature and the sins that
prevent humans from receiving God's blessings.
CLO 2. Able to live according to Christian values in daily life in a

critical, rational, ethical and dynamic way.
Content 1. Introduction and learning contract.

2. God: God's Existence, The nature and nature of God, and the
conception of God according to the Christian faith.
3. Human: Human nature, and the concept of man according to
Christianity.
4. Moral: The meaning of Christian ethics / morals for Christians
5. Science and Technology: The positive reciprocal relationship
between faith and science.
6. Harmony: Pluralism in Indonesia, and the obstacles around it
Pluralism.
7. Society: The role of Christians in society
8. Work culture influenced by globalization and modern era
9. Politics: Politics and in relation to Christian views, and the
socio-political responsibilities of Christians.
10. Law: Definition and types of law, Christian views on law, and
Christian responsibility for God's laws and commands.

Reading list  ALKITAB :Kej 2,1-7; Mat 5,1-2.
 Franz Dahler, Pijar Peradaban Manusia, Yogyakarta, Kanisius.
 Leahy Louis, Siapakah Manusia, Yogyakarta, Kanisius.
 PausYohanes Paulus II, Fides et Ratio, Jakarta, Dokpen KWI
 Paus Benediktus XVI, Hubungana ntara Ilmu Pengetahuan dan
Kebenaran, PradicamusVol VIII.
30
Module Handbook
Religion - Buddhism
Module Name: Religion - Buddhism

-
Person responsible for the Kadek Yudi Murdana, Ma(B.Dh)
module:
Lecturer(s): Kadek Yudi Murdana, Ma(B.Dh)
Bachelor Programme
Compulsory Odd
in Biology
Contact hours per

week
Lectures 1.7 40
assignment &
4.0 40
independent

ECTS
1.7 4.0 90.7 h 3
55%.
learning outcomes
31
CLO 1. Able to understand the framework and contents of the

Tipitaka/Tripitaka scriptures.
CLO 2. able to understand the meaning and purpose of human life

that comes from the teachings of Buddha.
CLO 3. Able to understand the role of Buddhist universal law in daily

life.
CLO 4. Able to understand the meaning of Godhead in Buddhism.
CLO 5. Able to understand moral values and norms (sila) as the

basis and pattern of life.
CLO 6. Able to understand the harmony of science and technology

and art in life.
CLO 7. Able to understand the concept of Buddhist society and the

construction of attitudes of inter-religious harmony.
CLO 8. Able to understand the dynamics of Buddhist culture and

politics in the context of Indonesian nationality.
CLO 9. Able to understand about bhavana to form a clean mind of

human character.
Content 1. The Tipitaka/Tripitaka scriptures

2. The meaning and purpose of human life that comes from the teachings
of Buddha
3. The role of Buddhist universal laws in daily life
4. The Meaning of the Supreme Godhead in Buddhism
5. Moral values and norms (sila) as the basis and pattern of life
6. Harmony of science and technology and art in life
7. The concept of Buddhist society and the construction of an attitude of
inter-religious harmony
8. The dynamics of Buddhist culture and politics in the context of
Indonesian nationality
9. Bhavana to form a clean mind of human character
Final score: Quiz (20%) + Assignment (20%) + mid exam (30%) +
final exam (30%).
Reading list  Bodhi, Bhikkhu. In the Buddha’s Words.Wisdom Publication. Boston.
2005.
32
 Wowor, Cornelis. 1999. Hukum Kamma Buddhis. Jakarta: Rora
Karya.
 Dirjen Belmawa, Pendidikan Agama Buddha untuk Perguruan Tinggi,
Jakarta. 2016.
 Kusaladhamma, Ashin. Kronologi Hidup Buddha. Ehipassiko
Foundation. Jakarta. 2015.
 Mahathera, Narada. 1996. Sang Buddha dan Ajaran-
ajaranNya. Jakarta: Dhammadipa Arama
33
Module Handbook
Biosystematics
Module Name: Biosystematics

-
Semester/term: 2nd semester
Person responsible for the Rodiyati Azrianingsih, S.Si., M.Sc., Ph.D
module:
Lecturer(s): 1. Dr. Suharjono, M.S.
4. Irfan Mustafa, S.Si., M.Si., Ph.D
5. Prof. Amin Setyo Leksono, M.Si., Ph.D
6. Dr. Jati Batoro, M.Si.
Bachelor Programme
Compulsory Even
in Biology
Contact hours per

week
Lectures 1.7 40
assignment &
4.0 40
independent

ECTS
1.7 4.0 90.7 h 3
55%.
34

ILO 5. Able to solve problems based on scientific methods by

applying biological sciences, biological analysis methods and
technological applications.
CLO 1. Understand the principles and concepts of biosystematics

and its important role in the field of biology.
CLO 2. Explain the application of biosystematic studies in solving

biological problems from a bioconservation perspective.
CLO 3. Complete the task in compiling the components of

biosystematics, as well as conveying their interpretation well.
Content 1. Definition of Biosystematics (difference and intersection with
Taxonomy)
2. Principles of Biosystematics, its position and role in biological
studies.
3. Evolution of living things, the occurrence of Variations &
Species, and aspects of phylogeography.
4. Evolution of Evidence as Taxonomic markers and their
reference sources (relevant literature, institutions and
methods)
5. Methods of documenting relevant taxon/organism samples for
biosystematics studies (e.g., herbarium, gene-bank etc.)
6. Components of Biosystematics: (Description, Classification,
Identification, Nomenclature, and Phylogeny), and their
application to living taxa.
7. The concept of phylogeny and its approach/study models
8. Interpretation of phylogenetic trees and recent developments
9. Construction of a phylogenetic tree (manual and electronic):
dendrogram and cladogram
10. Analysis and Review.
Reading list  Darwin, C. 1859. On the origin of species. W. Clowes and Sons. London
UK
35
 Futuyma, D.J. 2005. Evolution. Sinauer Associates, Inc. Publisher.
Sunderland USA
 Judd,W. S., C. S. Campbell, E. A. Kellog, P. F. Stevens, & M. J.
Donoghue. 2008. Plant Systematics A Phylogenetic Approach Second
Edition. Sinauer Associates. Sunderland.
 Margulis, L. and Schwartz, K.V. 1998. Five Kingdoms, an Illustrated Guide
to the Phyla of Life on Earth. 3rd edition. A.W.H. Freeman/Owl Book. New
York.
 Mayr, E. 2001. What Evolution Is. Orion Books Ltd. London England
 Mayr, G. 2009. Paleogene Fossil Bird. Springer-Verlag Berlin Heidelberg.
Heidelberg Germany
 Radford, A.E. 1986. Fundamentals of Plant Systematics. Harper & Row
Publisher. NY;
 Simpson, M.G. 2011. Plant Systematics. Elsevier. Academic Press. NY.
 Tjitrosoepomo, G. 2017. Taksonomi Tumbuhan. Gajah Mada University
Press. Yogyakarta.
 Vogel, E.V. 1987. Manual of Herbarium Taxonomy: Theory and Practice.
Rijkherbarium. Leiden.
36
Module Handbook
Diversity of Flora
Module Name: Diversity of Flora

-
Person responsible for the Rodiyati Azrianingsih, M.Sc., Ph.D
module:
Lecturer(s): 1. Rodiyati Azrianingsih, M.Sc.,Ph.D
3. Dr. Serafinah Indriyani, M.S
4. Dr. Brian Rahardi, M.Sc
Bachelor Programme
Compulsory Even
in Biology
Contact hours per

week
Lectures 1.7 40
assignment &
4.0 40
independent

ECTS
1.7 4.0 90.7 h 3
55%.
Recommended prerequisites Passed on General Biology (MAB61001)
learning outcomes
37


CLO1. Able to understand the application of plant taxonomy concepts in

solving biological problems.
CLO 2. Able to recognize the basic comparison of living things in the world
of flora that are members of the four kingdoms (Monera, Protista, Fungi
and Plantae) through available instruments/libraries.
CLO 3. Able to convey ideas/opinions well orally and in writing regarding

the issue of flora diversity.
Content 1. Terminology, Scope of Flora Diversity Study
2. Tropical Flora Diversity: Phytogeography, documentation,
reference, and conservation.
3. Biosystematics of Kingdom Monera: Diversity of
Cyanobacteria Taxa
4. Biosystematics of Kingdom Protoctista: Algae Diversity
5. Biosystematics of Kingdom Fungi (parents of Kingdom Fungi)
and Evolution of Ancient Plants (parents of Kingdom Plantae)
6. Diversity of Kingdom Fungi and Lichens
7. The Diversity of the Moss Sub-kingdom
8. The Evolution of Vascular Plants: Pteridophyte Diversity
9. The Evolution of Seed Plants: The Diversity of the
Gymnosperm Sub-kingdom
10. Biosystematics of the Angiosperms Sub-Kingdom: Diversity of
Dicot Class
11. Biosystematics Sub Kingdom Angiosperms: Diversity of
Monocot Class
examination  Small group discussion
 Paper project
Final score: Attitude (10%), paper project (15%), presentation/
discussion (15%), mid exam (30%) and final exam (30%).
Reading list  Backer, C. A. & R. C. Bakhuizen Van Den Brink. 1965. Flora of
Java. N.V. P. Noordhoff. Groningen. Netherlands.
38
 Elpel, T.J. Botany in a Day: The Pattern Methods of Plant
Identification. Hops Press.
Donoghue. 2008. Plant Systematics A Phylogenetic Approach.
Sinauer Associates. Sunderland.
 Margulis, L. and Schwartz, K.V. 1998. Five Kingdoms, an Illustrated
Guide to the Phyla of Life on Earth. 3rd edition. A.W.H. Freeman/Owl
Book. New York.
 Radford, A.E. 1986. Fundamentals of Plant Systematics. Harper &
Row Publisher. NY;
 Singh, G. 2003. Plant Systematics: An Integrated Approach. Science
Publishers. London;
 Stace, C.A. 1979. Plant Taxonomy and Biosystematics. Edward
Arnold a Division Holder a Stoughton. London;
 Sutiman, B.S., Widyarti, S., Sofy P., 2017. Biologi Sel, UB Press,
Malang
 Tjitrosoepomo, G. 2005. Taksonomi Tumbuhan: Spermatophyta.
Gajah Mada University Press. Yogyakarta.
 Tjitrosoepomo, G. 2005. Taksonomi Tumbuhan: Schizophyta,
Thallophyta, Bryophyta, Pteridophyta. Gajah Mada University Press.
Yogyakarta.
 Tjitrosoepomo, G. 2005. Taksonomi Tumbuhan. Gajah Mada
University Press. Yogyakarta.
 Van Steenis. Flora Malesiana-serial. Jakarta.
 Vogel, E.V. 1987. Manual of Herbarium Taxonomy: Theory and
Practice. Rijkherbarium. Leiden.
39
Module Handbook
Practice in Diversity of Flora
Module Name: Practice in Diversity of Flora

-
Person responsible for the Rodiyati Azrianingsih M.Sc., Ph.D
module:
Lecturer(s): 1. Rodiyati Azrianingsih, M.Sc., Ph.D
3. Dr. Serafinah Indriyani, M.S
4. Dr. Brian Rahardi, M.Sc
Bachelor Programme
Compulsory Even
in Biology
Contact hours per

week
Lectures - -
assignment &
- -
independent
laboratory session, etc) and private/self-study, including examination

ECTS
5.7 - 90.7 h 3
55%.
40
learning outcomes



General Competence (Knowledge)
Students have an ability:
1. to recognize local floras, both using herbaria and fresh samples, in a
laboratory, in garden and in field,
2. to practice in describing taxonomically each the flora, identifying and
classifying them.
Specific Competence:
1. Students have ability to make botanical illustration.
2. Students have ability to use and develop identification keys.
3. Students have ability to conduct a taxonomical work for
Cyanobacteria.
4. Students have ability to conduct a taxonomical work for macro-algae.
5. Students have ability to conduct a taxonomical work for fungi.
6. Students have ability to conduct a taxonomical work for Bryophytes.
7. Students have ability to conduct a taxonomical work for Pteridophytes.
8. Students have ability to conduct a taxonomical work for
Spermatophytes.
Content Botanical illustration, Identification keys, Cyanobacteria (Kingdom Monera),
macro-algae (Kingdom Protista), fungi (Kingdom Fungi), Bryophytes,
Pteridophytes, Spermatophytes: Gymnospermae, Magnoliopsids,
Liliopsids.
requirements and forms of  Pre/post-test
examination  Lab report
 Final lab test
Final score (NA) is calculated as follow: Pre/post-test (15%), reports (20%),

final exam (30%), presentation (20%) and soft skill (15%).
Media employed LCD, laptop, google classroom, video conference (zoom/ gmeet)
Reading list  Besse, P., 2021. Molecular Plant Taxonomy. Springer US.
 Lawrence, G.H.M., 2017. Taxonomy of vascular plants.
Scientific Publishers.
 Simpson, M.G., 2019. Plant systematics. Academic press.
41
 Backer, C. A. & R. C. Bakhuizen Van Den Brink. 1965. Flora of
 Elpel, T.J. Botany in a Day: The Pattern Methods of Plant
Identification. Hops Press.
Donoghue. 2008. Plant Systematics A Phylogenetic Approach.
Sinauer Associates. Sunderland.
 Margulis, L. and Schwartz, K.V. 1998. Five Kingdoms, an Illustrated
Guide to the Phyla of Life on Earth. 3rd edition. A.W.H. Freeman/Owl
Book. New York.
 Radford, A.E. 1986. Fundamentals of Plant Systematics. Harper &
Row Publisher. NY;
 Singh, G. 2003. Plant Systematics: An Integrated Approach. Science
Publishers. London;
Arnold a Division Holder a Stoughton. London;
 Sutiman, B/S., Widyarti, S., Sofy P., 2017. Biologi Sel, UB Press,
Malang
 Tjitrosoepomo, G. 2005. Taksonomi Tumbuhan: Spermatophyta.
Gajah Mada University Press. Yogyakarta.
 Tjitrosoepomo, G. 2005. Taksonomi Tumbuhan: Schizophyta,
Thallophyta, Bryophyta, Pteridophyta. Gajah Mada University Press.
Yogyakarta.
 Tjitrosoepomo, G. 2005. Taksonomi Tumbuhan. Gajah Mada
University Press. Yogyakarta.
 Van Steenis. Flora Malesiana-serial. Jakarta.
 Vogel, E.V. 1987. Manual of Herbarium Taxonomy: Theory and
Practice. Rijkherbarium. Leiden.
42
Module Handbook
Diversity of Fauna
Module Name: Diversity of Fauna

-
Person responsible for the Nia Kurniawan, S.Si., M.P., D.Sc.
module:
Lecturer(s): 1. Nia Kurniawan, S.Si., M.P., D.Sc.
2. Dr. Bagyo Yanuwiadi
3. Prof. Amin Setyo Leksono, S.Si., M.Si., Ph.D
4. Zulfaidah Penata Gama, S.Si., M.Si., Ph.D
Bachelor Programme
Compulsory Even
in Biology
Contact hours per

week
Lectures 1.7 40
assignment &
4.0 40
independent

ECTS
1.7 4.0 90.7 h 3
55%.
learning outcomes
43


CLO 1. Understand the basic science supporting animal biology which
includes the concept of species, systematics and animal evolution
CLO 2. Skilled in using simple methods based on observation of
characteristics to determine the classification of Invertebrates and
Vertebrates
CLO 3. Understand the classification and characteristics of Protozoa
CLO 4. Understand the classification and characteristics of Porifera and
Cnidaria
CLO 5. Understand the classification and characteristics of Arthropods
CLO 6. Understand the classification and characteristics of worms
(Platyhelminthes, Nematodes, Annelida)
CLO 7. Understand the classification and characteristics of Molluscs and
Echinoderms
CLO 8. Understand the classification and characteristics of Pisces
(Condrichtyes)
CLO 9. Understand the classification and characteristics of Pieces
(Osteichtyes)
CLO 10. Understand the classification and characteristics of Amphibia
CLO 11. Understand the classification and characteristics of Reptiles
CLO 12. Understand the classification and characteristics of Aves
CLO 13. Understand the classification and characteristics of Mammals
CLO 14. Understanding of Fauna Diversity Conservation Applications and
strategies
Content 1. Classification and characteristics of Invertebrates and
Vertebrates
2. Classification and characteristics of Protozoa
3. Classification and characteristics of Porifera and Cnidaria
4. Classification and characteristics of Arthropods
5. Classification and characteristics of worms (Platyhelminthes,
Nematodes, Annelida)
6. Classification and characteristics of Mollusca and
Echinoderms
7. Classification and characteristics of Pisces (Chondrichthyes)
8. Classification and Characteristics of Pieces (Osteichthyes)
9. Classification and characteristics of Amphibia
10. Classification and characteristics of Aves
11. Classification and characteristics of Mammals
12. Fauna Diversity conservation applications and strategies
44
 Paper project
Final score: Quiz (10%) + paper project (15%), presentation (15%),
mid exam (30%) and final exam (30%).
Reading list  Barnes, R. 2001. The Invertebrates. Blackwell Science
 Beutel, dkk. 2014. Insect Morphology and Phylogeny: A textbook for
students of entomology. Walter de Gruyter. Berlin
 Cleveland, dkk. 2002. Animal Diversity 3rd edition. McGraw-Hill.
New York
 Das, I. 2014. A Field Guide to the Reptiles of South East Asia.
Bloomsbury Publishing Plc. London
 Gilliot, C. 2005. Entomology. Springer. Berlin
 Glencoe McGraw-Hill. 2004. Glencoe Science: Animal Diversity,
Student Edition. McGraw- Hill. New York
 Hastings, dkk. 2015. Fishes: A Guide to Their Diversity. University
of California Press. California
 Hickman, dkk. 2017. Integrated Principles of Zoology 17th edition.
McGraw-Hill. New York.
 Iskandar, D.T. 1998. The Amphibian of Java and Bali. LIPI. Bogor
 Kershaw, D.R. ed., 2012. Animal diversity. Springer Science &
Business Media.
 MacKinnon, dkk. 1999. Seri Paduan Lapangan Burung-Burung di
Sumatera, Jawa dan Bali. LIPI. Bogor
 Linzey D. 2000. Biology Vertebrate. McGraw-Hill. New York
 Vitt & Cadwell. 2014. Herpetology An Introductory Biology of
Amphibians and Reptiles. Academic Press. London.
45
Module Handbook
Practice in Diversity of Fauna
Module Name: Practice in Diversity of Fauna

-
Person responsible for the Nia Kurniawan, S.Si., M.P., D.Sc.
module:
Bachelor Programme
Compulsory Even
in Biology
Contact hours per

week
Lectures - -
assignment &
- -
independent

ECTS
5.7 - 90.7 h 3
55%.
46
learning outcomes



General competence (knowledge).
1. Able to identify, classify, recognize the characteristics and describe
Cnidaria, Mollusca, and Echinoderms
Worms (Platyhelminthes, Nematodes, and Annelida)
Arthropods
fish
Amphibia and Reptiles
Aves and Mammalia
7. Able to observe fauna in natural habitats
8. Able to identify fauna observed in nature
9. Able to present and discuss the results of observations in nature
Content 1. Briefing and general introduction
2. Identification of Cnidaria, Mollusca, and Echinoderms
3. Identification of Worms (Platyhelminthes, Nematodes, and Annelida)
4. Identification of Arthropods
5. Fish Identification
6. Identification of Amphibians and Reptiles
7. Identification of Aves and Mammalia
8. TNAP Fieldwork: Echinoderms to Mammals
9. Identification of TNAP Fieldwork Results
10. Fieldwork Result Presentation
 Final lab test
Final score (NA) is calculated as follow: Pre/post-test

(15%) + practice report (25%) + fieldwork report (15%) +
presentation of fieldwork (15%) + final exam (30%)
47
Reading list  Barnes, R. 2001. The Invertebrates. Blackwell Science
 Beutel, dkk. 2014. Insect Morphology and Phylogeny: A textbook for
students of entomology. Walter de Gruyter. Berlin
 Cleveland, dkk. 2002. Animal Diversity 3rd edition. McGraw-Hill. New
York
 Das, I. 2014. A Field Guide to the Reptiles of South East Asia.
Bloomsbury Publishing Plc. London
 Gilliot, C. 2005. Entomology. Springer. Berlin
 Glencoe McGraw-Hill. 2004. Glencoe Science: Animal Diversity,
Student Edition. McGraw- Hill. New York
 Hastings, dkk. 2015. Fishes: A Guide to Their Diversity. University of
California Press. California
 Hickman, dkk. 2017. Integrated Principles of Zoology 17th edition.
McGraw-Hill. New York.
 Iskandar, D.T. 1998. The Amphibian of Java and Bali. LIPI. Bogor
 Kershaw, D.R. ed., 2012. Animal diversity. Springer Science &
Business Media.
 MacKinnon, dkk. 1999. Seri Paduan Lapangan Burung-Burung di
Sumatera, Jawa dan Bali. LIPI. Bogor
 Linzey D. 2000. Biology Vertebrate. McGraw-Hill. New York
 Vitt & Cadwell. 2014. Herpetology An Introductory Biology of
Amphibians and Reptiles. Academic Press. London.
48
Module Handbook
Plant Structure and Development
Module Name: Plant Structure and Development

-
Mufidah Afiyanti, S.P., Ph.D
module:
Lecturer(s): 1. Dr. Serafinah Indriyani, M.Si
3. Rodiyati Azrianingsih, M.Sc., PhD
4. Dr. Brian Rahardi, S.Si., M.Sc.
Bachelor Programme
Compulsory Even
in Biology
Contact hours per

week
Lectures 2.5 40
assignment &
6.0 40
independent
Laboratory practice - -

ECTS
2.5 6.0 136 h 4.5
55%.
learning outcomes
49


CLO 1. Mastering theoretical concepts or their applications in the scope of

CLO 2. Able to use biology to solve simple problems through application

knowledge of biology, biological analysis methods, as well as the
application of relevant technology in the scope of work.
CLO 3. Have responsibility in completing taSCU as part of the

organization.
CLO 4. Able to provide instructions/input in a teamwork.

Content 1. The external structure of roots and stems and the branching
architecture of the stem
2. External structure of leaves and metamorphosis of plant organs
3. The external structure of the flower
4. External structure of fruit, seeds, and institutions
5. Structure and development of plant cells and meristematic tissues
6. Structure and development of basic, protective, and reinforcing
networks
7. Structure and development of transport and secretory tissues
8. Internal structure and development of roots, stems and leaves
9. Pollination and fertilization
10. Embryogenesis, polyembryony, and apomixis
11. Internal structure and development of fruit and seeds
Final score: Assignment (15%) + quiz (15%) + mid exam (35%) +

final exam (35%)
Reading list  Beck, CB. 2010. An Introduction to Plant Structure and Development.
Plant Anatomy for the Twenty-First Century. Second Edition.
Cambridge University Press.
 Crang, R., Lyons-Sobaski, S. & Wise, R. 2018. Plant Anatomy: A
Concept-Based Approach to the Structure of Seed Plants. Springer.
 Harris and Harris. 2001. Plant Identification Terminology: An
50
Illustrated Glossary. Spring Lake Publication.
 Bell, A.D. 1991. Plant Form: An Illustration Guide to Flowering Plant
Morphology. Oxford University Press. New York.
 Bhojwani, S.S. &S.P. Bhatnagar. 1974. The Embryology of
Angiosperm. Vikas Publ. House PVT. Ltd. New Delhi.
 Bowes, B.G. 1995. A Colour Atlas of Plant Structure. Manson
Publishing.
 Cutler, D.F., T. Botha & D.W. Stevenson. 2007. Plant Anatomy: An
Applied Approach. Blackwell Publishing.
 Dickison, W.C. 2000. Integrative Plant Anatomy. Harcourt Academic
Press. San Diego.
 Essau, K. 1987. Anatomy of Seed Plants. Second Edition. John Wiley
& Sons. New York.
 Evert, R.F. 2006. Esau's Plant Anatomy: Meristems, Cells, and
Tissues of the Plant Body-Their Structure, Function, and
Development. Third Edition. A John Wiley & Sons, Inc. Publication.
New Jersey.
 Fahn, A. 1974. Plant Anatomy. Second Edition. Pergamon Press.
Oxford.
 Harris, J.G. & M.W. Harris. 2001. Plant IdentificationTerminology:
AnIllustratedGlossary. Second Edition. Spring Lake Publishing.
Spring Lake Utah.
 Hidayat, E.B. 1995. Anatomi Tumbuhan Berbiji. Penerbit ITB.
Bandung.
 Johri, B.M. (Ed.) 1984. Embryology of Angiosperms. Springer-Verlag.
Berlin-Heidelberg-New York-Tokyo.
 Lawrence, G.H.M. 1964. Taxonomy of Vascular Plant. The McMillan
Company. New York.
 Maheshwari, P. 1950. An Introduction to The Embryology of
Angiosperms. First Edition. McGraw-Hill Book Company, Inc. New
York-Toronto-London.
51
Module Handbook
Practice in Plant Structure and Development
Module Name: Practice in Plant Structure and Development

-
Mufidah Afiyanti, S.P., Ph.D
module:
Lecturer(s): 1. Dr. Serafinah Indriyani, M.Si
3. Rodiyati Azrianingsih, M.Sc., PhD
4. Dr. Brian Rahardi, S.Si., M.Sc.
Bachelor Programme
Compulsory Even
in Biology
Contact hours per

week
Lectures - -
assignment &
- -
independent

ECTS
5.7 - 90.7 h 3
55%.
52
learning outcomes

CLO 1. Skilled in analyzing the structure and development of plants.
CLO 2. Able to understand the important role of analysis skills of structure

and development of plants in biology.
CLO 3. Able to demonstrate good attitudes and safe methodologies in

working either in the laboratory or in the fields.
CLO 4. Able to complete taSCU effectively and efficiently in a team

harmoniously.
Content 1. The external structure of the vegetative organs of seed plants (roots,
stems, and leaves
2. External structure of the reproductive organs of seed plants (flowers,
fruits, seeds, and germination)
3. Organ modification (root, stem, and leaf metamorphosis)
4. Branching architecture on the stem
5. Layout of leaves on stems, preparation of leaf formulas, charts and
diagrams of leaf formulas
6. Flowers, flower formulas and diagrams
7. Ergastic bodies in plant cells, dotted structures
8. Internal structure of root, stem, and leaf organs
9. Internal structure of the reproductive organs of seed plants
 Final lab test
Final score (NA) is calculated as follow: Pre/post-test

(15%) + practice report (25%) + fieldwork report (15%) +
presentation of fieldwork (15%) + final lab test (30%)
Reading list  Beck, CB. 2010. An Introduction to Plant Structure and Development.
Plant Anatomy for the Twenty-First Century. Second Edition.
Cambridge University Press.
 Crang, R., Lyons-Sobaski, S. & Wise, R. 2018. Plant Anatomy: A
Concept-Based Approach to the Structure of Seed Plants. Springer.
 Harris and Harris. 2001. Plant Identification Terminology: An
53
Illustrated Glossary. Spring Lake Publication.
 Bell, A.D. 1991. Plant Form: An Illustration Guide to Flowering Plant
Morphology. Oxford University Press. New York.
 Bhojwani, S.S. &S.P. Bhatnagar. 1974. The Embryology of
Angiosperm. Vikas Publ. House PVT. Ltd. New Delhi.
 Bowes, B.G. 1995. A Colour Atlas of Plant Structure. Manson
Publishing.
 Cutler, D.F., T. Botha & D.W. Stevenson. 2007. Plant Anatomy: An
Applied Approach. Blackwell Publishing.
 Dickison, W.C. 2000. Integrative Plant Anatomy. Harcourt Academic
Press. San Diego.
 Essau, K. 1987. Anatomy of Seed Plants. Second Edition. John Wiley
& Sons. New York.
 Evert, R.F. 2006. Esau's Plant Anatomy: Meristems, Cells, and
Tissues of the Plant Body-Their Structure, Function, and
Development. Third Edition. A John Wiley & Sons, Inc. Publication.
New Jersey.
 Fahn, A. 1974. Plant Anatomy. Second Edition. Pergamon Press.
Oxford.
 Harris, J.G. & M.W. Harris. 2001. Plant IdentificationTerminology:
AnIllustratedGlossary. Second Edition. Spring Lake Publishing.
Spring Lake Utah.
 Hidayat, E.B. 1995. Anatomi Tumbuhan Berbiji. Penerbit ITB.
Bandung.
 Johri, B.M. (Ed.) 1984. Embryology of Angiosperms. Springer-Verlag.
Berlin-Heidelberg-New York-Tokyo.
 Lawrence, G.H.M. 1964. Taxonomy of Vascular Plant. The McMillan
Company. New York.
 Maheshwari, P. 1950. An Introduction to The Embryology of
Angiosperms. First Edition. McGraw-Hill Book Company, Inc. New
York-Toronto-London.
54
Module Handbook
Indonesian Language
Module Name: Indonesian Language

-
Person responsible for the Prima Zulvarina, S.S., M.Pd
module:
Lecturer(s): 1. Prima Zulvarina, S.S., M.Pd.
2. Millatuz Zakiyah, S.Pd., M.A.
3. Noveria Anggraeni Fiaji, M.Pd.
4. Fitrahayunitisna, S.S., M.Pd.
5. Trisna Andarwulan, S.S., M.Pd.
6. Mokhamad Jainuri, M.Hum.
7. Muhammad Hambali. S.S., M.Pd.
Bachelor Programme
Compulsory Even
in Biology
Contact hours per

week
Lectures 1.7 40
assignment &
4.0 40
independent

ECTS
1.7 4.0 90.7 h 3
55%.
55
learning outcomes ILO 6. Able to demonstrate good communication skills in delivering
CLO1. Able to show a positive attitude and love the Indonesian

language by applying it in effective communication in the academic
environment.
CLO 2. Able to understand and apply various languages according

to the context of use in formal/non-formal communication in the
scientific field.
CLO 3. Able to read critically scientific texts by linking them with

previous schemata and contexts.
CLO 4. Able to evaluate texts in scientific and popular writings

according to proper grammar and spelling rules.
CLO 5. Able to explore creative and innovative ideas in writing

scientific or popular scientific works.
CLO 6. Able to produce scientific or popular writings in a systematic,

logical, and empirical manner that deserves to be published in
journals and mass media.
Content 1. The history of the Indonesian language, the function and
position of the Indonesian language
2. Variety of Indonesian
3. Ethics and Aesthetics in Scientific Forums
4. Critical Reading of Texts (scientific field)
5. Writing Quotations, Bibliography, and Plagiarism
6. Indonesian Spelling and Diction
7. Effective Sentences in Scientific Writing
8. Paragraphs in Scientific Writing
9. Popular Posts
10. Concept of Scientific Work
11. Compiling Scientific Work
examination  Presentation
 Small group discussion
Final score: Assignment (10%) + Presentation
(15%) + Class discussion participation (15%) + mid exam (30%) + final exam
(30%).
LCD, laptop, google classroom, video conference (zoom/gmeet),
Media employed
online KBBI and PUEBI.
56
Reading list  Andarwulan, Trisna. 2019. Kreatif Berbahasa Indonesia: Acuan
Pembelajaran Bahasa Indonesia Ilmiah di Perguruan Tinggi.
Bandung: Rosda Karya
 Tim dosen Pusat MPK. 2019. Bahan Ajar Bahasa Indonesia. Malang.
Pusat MPK UB 3. Suyitno, Imam.2012.Menulis Makalah dan Artikel.
Bandung: Rifeka Aditama
Setyowati, Eti, dkk. 2017. Bahasa Indonesia Berbasis Karakter.
Malang: UB Press
 Suwignyo, Heri. 2013.Bahasa Indonesia Keilmuan Perguruan Tinggi.
Malang: Aditya Media Publising 6. Suyono, dkk. 2015. Cerdas
Menulis Karya Ilmiah. Malang: Gunung Samudera
 Sukmawan, Sony. 2008. Etika dan Estetika Berbahasa Indonesia
dalam Forum Ilmiah. Makalah, disajikan dalam Seminar Nasional
Menyongsong Kongres Bahasa XI di Semarang.
 Suyanto, Edi. 2015. Membina, Memelihara, dan Menggunakan
Bahasa Indonesia Secara Benar. Yogyakarta:Graha Ilmu
 Chaer, Abdul dan Agustina, Leoni. 2010. Sosiolinguistik: Perkenalan
Awal. Jakarta: Renika Cipta 4. Pedoman Umum Ejaan Bahasa
Indonesia
KBBI Edisi Kelima Daring
Universitas Negeri Malang. 2015. Pedoman Penulisan Karya Ilmiah.
Malang: UM
57
Module Handbook
Pancasila
Module Name: Pancasila

-
Person responsible for the Dr. Mohamad Anas, M.Phil.
module:
Lecturer(s): 1. Dr. Mohamad Anas, M.Phil.
2. Emi Setyaningsih, M.Phil.
3. Galieh Damayanti, S.H., M.H.
4. Destriana Saraswati, M.Phil.
5. Albar Adetary Hasibuan, M.Phil.
6. Triya Indra R., S.H., M.H.
7. Prisca Kiki W., S.Pd., M.Sc.
Bachelor Programme
Compulsory Even
in Biology
Contact hours per

week
Lectures 1.7 40
assignment &
4.0 40
independent

ECTS
1.7 4.0 90.7 h 3
55%.
58
learning outcomes ILO 1. Able to demonstrate academic integrity and the ability to
CLO1. Able to analyze, compare, and reflect on the function and important
position of Pancasila in the history of the nation.
CLO 2. Able to analyze the relationship between the philosophical nature

of the values of the Pancasila precepts and use it as a knife to analyze the
nation's problems.
CLO 3. Able to understand the supremacy of the constitution and the

peculiarities of the 1945 Constitution of the Republic of Indonesia which is
based on the values of Pancasila and to sort out constitutional and
unconstitutional behavior in the life of the nation and state.
CLO 4. Able to understand, identify, and account for the analysis of laws
and policies that are idealistic, practical and pragmatic based on Pancasila.
CLO 5. Able to build awareness of critical and innovative thinking in the

development of science and technology based on Pancasila values.
Content 1. Introduction to Pancasila Education
2. Pancasila in Historical Studies
3. Pancasila as a Philosophical System
4. Pancasila as Ideology
5. Pancasila as the State Foundation
6. Pancasila as a System of Ethics
7. Pancasila as the Value Foundation for the Development of
Science
 Presentation
Final score: Quiz (10%) + Assignment (15%) + Presentation (15%) +
mid exam (30%) + final exam (30%).
Reading list  Tim Dosen Pancasila MPK UB, 2019, Buku Ajar Pendidikan
Pancasila
 Buku Pendidikan Pancasila, Dikti
 Kaelan, 2009, Filsafat Pancasila: Pandangan Hidup Bangsa
Indonesia, Paradigma, Yogyakarta
 Hariyono, 2014, Ideologi Pancasila, Roh Progresif Nasionalisme
Indonesia, Malang: Intrans
 Kaelan, 2013, Negara Kebangsaan Pancasila, Yogyakarta:
Paradigma
 Yudi Latief, 2011, Negara Paripurna: Historisitas, Rasionalitas, dan
Aktualitas Pancasila, Jakarta: Gramedia
59
 Yudi Latief, 2014. Mata Air Keteladanan: Pancasila dalam Perbuatan,
Bandung: Mizan
60
Module Handbook
Animal Histology
Module Name: Animal Histology

-
Person responsible for the Drs. Aris Soewondo, M.Si.
module:
Lecturer(s): 1. Drs. Aris Soewondo, M.Si.
2. Dr. Agung Pramana Warih Marhendra, M.Si.
3. Sofy Permana, M.Sc., D.Sc
Bachelor Programme
Compulsory Even
in Biology
Contact hours per

week
Lectures 0.8 40
assignment &
2.0 40
independent

ECTS
3.6 2.0 90.7 h 3
55%.
learning outcomes
61


skills
CLO 2. Understand the structure, function and organization of life
CLO 3. Able to demonstrate scientific attitudes (curiosity, objective,

rational, critical, open mind, creative, innovative, etc.), and social attitude
(polite, respecting others, being responsible, etc.)
CLO 4. Skilled in using appropriate methods to solve simple problems etc
CLO 5. Able to communicate in Indonesian and English in the field of

biology
Content 1. Epithelial tissue
2. Binding network
3. Muscle and nerve tissue
4. Respiratory System
5. Digestive System
6. Circulation system
7. Endocrine system
8. Urinary system
9. Female genital system
10. Male genital system
11. Integumentary system
12. Nervous system
13. Sensory organs
 Pre/post-test
 Lab report
 Final lab test
62
Final score (lectures-A): Quiz (15%) + Assignment (15%), mid exam
(35%) and final exam (35%).
Final score (lab practice-B): pre/post-test (15%) + Lab report (25%) +
final test (60%)
Total score: (A+B)/2
Reading list  Kierszenbaum A.L. and Tres, L.L. 2020. Histology and Cell Biology.
An Introduction to Pathology. 5th ed. Elsevier. Philadelpia.
 Liebich, H-G. 2019. Veterinary Histology of Domestic Mammals and
Birds. 5th ed. 5M Publishing Sheffield.
 Mescher, A.L. 2018. Junquiera’s Basic Histology. Text and Atlas. 15th
ed. Mc Graw-Hill Educatiuon. New York.
 Mills, S.E. 2020. Histology for Pathologist. 5th ed. Wolters Kluwer.
Philadelphia.
 Ross, M.H and Pawlina W. 2016. Histology: a Text and Atlas. With
Correlated Cell and Molecular Biology. 7th ed. Wolters
Kluwer. Philadelphia.
 Treuting, P.M.,Dintzis S.M. and Montine, K.S. 2018. Comparative
Anatomy and Histology. A Mouse, Rat and Human Atlas. 2nd Ed.
Elsevier. London.
63
Module Handbook
Biostatistics
Module Name: Biostatistics

-
Semester/term: 3rd semester
Achmad Efendi, Ph.D
module:
Lecturer(s): 1. Prof. Dr. Ir. Henny Pramoedyo, M.S
2. Achmad Efendi, Ph.D
3. Dr. Ani Budi Astuti, M.Si
Bachelor Programme
Compulsory Odd
in Biology
Contact hours per

week
Lectures 1.7 40
assignment &
4.0 40
independent

ECTS
4.5 4.0 136 h 4.5
55%.
Recommended prerequisites Passed on Basic Biocomputation (MAB60002)
learning outcomes
64


CLO 1. Able to understand Biology and its supporting sciences and their
benefits, as well as attitudes and behavior (life skills) as a biologist

the field of biology
Content 1. Hypothesis Testing: Introduction to Hypothesis Testing; Binomial
Hypothesis Testing
2. Hypothesis Testing: Normal Hypothesis Testing
3. Hypothesis Testing: Application of Hypothesis Testing
4. Experimental Design: Definition of treatment and experimental units,
Analysis and Variety Test
5. Experimental Design: Completely Randomized Design (CRD), BNT
Test, BNJ Test, Duncan's Test
6. Experimental Design: Randomized Block Design (RAK), BNT Test,
BNJ Test, Duncan's Test
7. RBSL and its implementation
8. Factorial Experiment
9. Multiple and Orthogonal Comparison
10. Correlation and Regression
11. Non-Parametric Statistical Analysis
12. Probit Analysis
13. Data Processing
 Lab report
 Pre/post-test
Class score (CS): Quiz (15%) + Assignment (15%), mid exam (35%),
and final exam (35%)
Practice score (PS): Report (30%) + pre/post-test (20%) + final
practice exam (50%)
65
Reading list  Efendi, A., 2017. Biostatistika dengan R dan MS Excel. UB Press.
Malang.
 Islam, M.A. and Al-Shiha, A., 2018. Foundations of biostatistics.
Singapore: Springer.
 Morgan, G.A. Leech, N.L. Gloeckner, G.W. Barret, K.C. 2011. IBM
SPSS for Introductory Statistics: Use and Interpretation. Routledge,
NY, USA.
 Rosner, B., 2015. Fundamentals of biostatistics. Cengage learning.
66
Module Handbook
Animal Anatomy and Physiology
Module Name: Animal Anatomy and Physiology

-
Person responsible for the Prof. Muhaimin Rifa’i, S.Si., Ph.D.Med.Sc
module:
Lecturer(s): 1. Prof. Muhaimin Rifa’i, S.Si., Ph.D.Med.Sc
2. Prof. Dr. Ir. Moch. Sasmito Djati, M.S., IPU.
3. Drs. Aris Soewondo, M.Si.
4. Dr. Agung Pramana Warih Marhendra, M.Si.
5. Dr. Sri Rahayu, M.Kes.
Bachelor Programme
Compulsory Odd
in Biology
Contact hours per

week
Lectures 2.5 40
assignment &
6.0 40
independent

ECTS
5.3 6.0 181.3 h 6
55%.
67
learning outcomes




skills
CLO 2. Understand the structure, function and organization of life.
CLO 3. Understand the coordination of life, regulation of growth and
development and analysis.
CLO 5. Understanding the reproductive system
CLO 7. Understand metabolism, nutrition, energy regulation, diabetes
mellitus and hypoglycemia.
CLO 8. Mastering theoretical concepts, analyzing and presenting in written
form
CLO 9. Able to understand the circulatory system in the heart and blood
pressure.
CLO 10. Understand the excretory system and osmoregulation in aquatic
and land animals
CLO 11. Understand cellular respiration, metabolism, and bioenergetics
CLO 12. Understand the skeletal and smooth muscle system
CLO 13. Describe the sensory system
CLO 14. Describe the central and peripheral nerves
CLO 15. Mastering theoretical concepts, analyzing and presenting in
written form
Content 1. Introduction of organs and their functions, chemical
constituents of the body, genetic control. The chemical
composition of the body, cells, signal transduction, and
genetic control.
2. Tissues, organs and organ systems
3. The body's defense system. The body's defense mechanisms,
B cell and T cell function, active and passive immunity,
autoimmune mechanisms
4. Endocrine glands and hormones, hormone mechanism of
action, pituitary gland, adrenal glands, thyroid and parathyroid
glands, pancreatic glands, autocrine and paracrine regulation
68
5. The role of adrenal hormone, thyroxine, and growth hormone,
calcium and phosphate regulation, thermoregulation.
6. Sexual reproduction, the role of hormones in sexual
reproduction, the female reproductive system, the male
reproductive system, the menstrual cycle, fertilization,
pregnancy, and birth.
7. Digestive system
8. Metabolism
9. Cardiovascular
10. Excretory system and osmoregulation
11. Respiratory system
12. Muscular system
13. Senses
14. Nervous system
 Pre/post-test
 Lab report
 Final lab test

final test (60%)
Total score: (3A+B)/4
Reading list  Jenkins, G. and Tortora, G.J., 2016. Anatomy and physiology. John
Wiley & Sons.
 Scanlon, V.C. and Sanders, T., 2018. Essentials of anatomy and
physiology. FA Davis.
 Rizzo, D.C., 2015. Fundamentals of anatomy and physiology.
Cengage Learning.
 VanPutte, C.L., Regan, J.L. and Russo, A.F., 2021. Seeley's
essentials of anatomy & physiology. University of Iowa.
 Tortora, G.J. and Derrickson, B., 2014. Anatomy & Physiology. Wiley
India Pvt Limited.
 Abbas, A.K dan A.H. Litchman. 2005. Cellular and Molecular
Immunology. Elsevier Saunder. Philadelphia;
 Alberts, B, Johnson, A, Lewis, J, Matin, Roberts, K, Walter, P. 2002.
The Cell. Garland Science, NY;
 Fox, S.I. 2004. Human Physiology. 8th Ed. McGraw Hill Company.
New York;
 Heiser, J.B., Janis, C., dan Pough, F.H. 1999. Vertebrate Life 5th ed.
Prentice Hall International Inc. London;
69
 Kardong, K.V. 2002. Vertebrates. Comparative Anatomy. Function,
Evolution. McGraw Hill Company. New York;
 Kent, G.C & Carr, R.K. 2001. Comparative Anatomy of the
Vertebrates 9th ed. McGraw Hill Company. New York;
 Schmidt-Nielsen, K. 1997. Animal Physiology. Adaptation &
environment 5th. Cambridge University Press. Cambridge. New York.
Post Chester. Melbourne. Sydney;
 Seeley, R.R., Stephens, T.D, & Tate, P. 2003. Anatomy and
Physiology 6th ed. McGraw Hill New York.
70
Module Handbook
Biochemistry and Instrumentation
Module Name: Biochemistry and Instrumentation

-
Person responsible for the Anna Safitri, S.Si., M.Sc., Ph.D
module:
Lecturer(s): 1. Anna Safitri, S.Si., M.Sc., Ph.D.
2. Dr. Sasangka Prasetyawan, M.S.
3. Prof. Dr. Ir. Chanif Mahdi, M.S.
4. Dr. Arie Srihardyastutie, M.Kes.
5. Drs. Sutrisno, M.Si.
6. Dra. Anna Roosdiana, M.App.Sc.
Bachelor Programme
Compulsory Odd
in Biology
Contact hours per

week
Lectures 1.7 40
assignment &
4.0 40
independent

ECTS
4.5 4.0 136 h 4.5
55%.
71
learning outcomes


CLO 1. Able to explain correctly the terms that include the main aspects of
terminology in biochemistry and the division of the organization of living
things.
CLO 2. Know and practice the use of spectroscopy for biological samples.
CLO 3. Students describe the structure, explain the nature and function of
biomolecules (carbohydrates, lipids, proteins, and enzymes).
CLO 4. Able to identify, isolate, and analyze biomolecules (carbohydrates,

lipids, proteins, and enzymes) qualitatively and quantitatively.
CLO 5. Able to explain and calculate the kinetics of enzymatic reactions s

simple.
CLO 6. Know the identification, properties and kinetics of enzymes, and

quantitative analysis of vitamins and calculate the activity of enzymes and
their kinetic constants.
CLO 7. Able to calculate changes in energy, reactions, and changes in the

structure of biomolecules (carbohydrates, lipids, proteins, and enzymes) in
metabolic processes and oxidative phosphorylation.
Content Lecture content:
1. Biochemistry definition, characteristics of living matter, cell
organization of prokaryotes, eukaryotes (higher plant and
animal cells), biomolecules and their functions in cells and
energy transformation
2. Classification, configuration and conformation, mutarotation
and chemical reactions of monosaccharides.
3. Structure, nomenclature and properties of disaccharides,
structure of polypeptides and their properties.
4. Amino acid structure and stereochemistry, grouping of amino
acids based on side chains, acid-base properties of amino
acids and chemical reactions of amino acids.
72
5. Peptide formation reactions, peptide bond properties, primary,
secondary, tertiary structures, quaternary protein molecules,
protein properties and determination of the sequence of
protein amino acid residues.
6. Enzymatic reaction kinetics, Michaelis-Menten equation,
Lineweaver-Burk equation, catalytic mechanism, effect of pH,
temperature, reaction time, inhibitors on the rate of enzymatic
reactions.
7. Fatty acids, triacylglycerols, chemical reactions of
triacylglycerols and fatty acids, phospholipids, sphingolipids,
lipoproteins.
8. Structure, properties of high-energy phosphate compounds,
energy cycle and ATP cycle in cells.
9. Respiratory chain, electron transport energy and mechanism
of oxidative phosphorylation.
10. The process of glycogenesis, glycolysis and its control
system, the conversion of pyruvate to acetyl-CoA, the TCA
pathway and its control, other carbohydrate metabolism
pathways, the process of gluconeogenesis, and glycogen
biosynthesis.
11. β-Oxidation process, oxidation of unsaturated fatty acids, fatty
acids with odd number of C atoms, control of fatty acid
oxidation and fatty acid biosynthesis.
12. Transamination reactions, ammonia formation reactions,
degradation of 20 kinds of amino acids, urea cycle and amino
acid biosynthesis.
13. Relationship between carbohydrate, protein, and lipid
metabolism metabolism.
Laboratory practice content:

1. Spectronic 20 parts, dilution of biological samples,
measurement of sugar content in fruit juices with spectronics
20.
2. Molisch test, Benedict test, Barfoed test, Iodine test,
Saliwanoff test, Analysis of total sugar in fruit juice, Isolation of
carbohydrates from fruits.
3. Amino acid solubility test, ninhydrin test, xanthoprotein
reaction, amino acid titration curve, Biuret test, protein
denaturation by heat and extreme pH, precipitation of protein
by heavy metals, precipitation of protein by acid, determination
of protein content by the Biuret method, isolation of casein
from milk.
4. Determination of Michaelis constant on casein hydrolysis by
trypsin, determination of lipase activity, catalase test,
peroxidase test, determination of vitamin C levels.
73
5. Lipid solubility test, saponification reaction, glycerol test,
determination of peroxide value, determination of free fatty
acids.
6. Fermentation, Schardinger test, peroxidase test, antioxidant
effect of vitamin C (ascorbic acid).
 Pre/post-test
 Lab report
 Final lab test

final test (60%)
Reading list  Garret, R. H. and Grisham, C. M., 2016, Biochemistry, 6th Ed.,
Brooks/Cole Cengage Learning, Belmont: USA.;
 Lehninger, A. L., 2017, Principles of Biochemistry, 7th Ed., John
Wiley & Sons, New York: USA.;
 Berg, J.M. Stryer, L., Tymoczko, J.L., Gatto, G.J. Biochemistry,
2015, 8th Ed. Mac Millan Learning, USA;
 Farrel, S. O. and Taylor, L. E., 2006, Experiments in Biochemistry: A
Hands-on Approach, 2nd Ed., Thomson Brooks/Cole Laboratory,
USA.;
 Sheehan, D., 2009, Physical Biochemistry: Principles and
Application, 2nd Ed.,Wiley-Blackwell, Chichester: UK.;
 Wilson, K. and Walker, J., 2009, Principles and Techniques of
Biochemistry and Molecular Biology, 7th Ed., Cambridge University
Press, New York: USA.
74
Module Handbook
Cell Biology
Module Name: Cell Biology

-
Person responsible for the Dr. Sri Widyarti, M.Si.
module:
Lecturer(s): 1. Prof. Sutiman Bambang Sumitro, S.U., D.Sc.
3. Sofy Permana, M.Sc., D.Sc.
4. Dr. Wahyu Widoretno, M.Si.
5. Mufidah Afiyanti, S.P., Ph.D.
Bachelor Programme
Compulsory Odd
in Biology
Contact hours per

week
Lectures 1.7 40
assignment &
4.0 40
independent

ECTS
4.5 4.0 136 h 4.5
55%.
75
learning outcomes



skills through understanding experimental models in studying cell
biology, and cell physico-chemical concepts
CLO 2. Skilled in using centrifugation and cell fractionation methods to
solve simple problems in biology
CLO 3. Skilled in using the principle of separation of proteins based on
physico-chemical properties and analysis using SDS-PAGE to
solve simple problems in the field of biology
CLO 4. Have English skills through English presentations on the topic of
microscope contrast techniques
CLO 5. Understand the structure, function and organization of life through
understanding the structure and function of membranes, cell
organelles, cytoskeleton, transport vesicles, extracellular matrix
CLO 6. Skilled in using the principle of penetration rate of solutions in lipid
membranes to solve simple problems in biology
CLO 7. Skilled in computer operations, especially the use of excel to
calculate the standard deviation of practicum data and create
graphs for analysis and synthesis in the field of biology.
development and its analysis through a basic understanding of
cell communication systems.
CLO 9. Skilled in using the DPPH method in the antioxidant activity test to
solve simple problems in biology.
Content 1. Experimental models in cell biology
2. How cells are studied
3. Basic physico-chemical concepts in cell biology
4. Cell Membrane
5. Cytoskeleton
6. Extracellular Matrix
7. Cell Cycle
8. Transport of intracellular molecules
9. Cell signaling
10. Programmed Cell Death (PCD)
76
 Pre/post-test
 Lab report
 Final practice test

final practice test (60%)
Reading list  Alberts, B., Bray, D., Hopkin, K., Johnson, A.D., Lewis, J., Raff, M.,
Roberts, K. and Walter, P., 2015. Essential cell biology. Garland
Science.
 Becker, W.M., Kleinsmith, L.J., and Hardin, J., 2000, The World of
The Cell, 4th ed., Addison Wesley Longman, Inc.
 Cooper, G.M. and Hausman, R.E., 2004, The Cell A Molecular
Approach, 3rd ed., Sinauer Associates, Inc., Massachusetts;
 Pollard, T.D., Earnshaw, W.C., Lippincott-Schwartz, J. and Johnson,
G., 2016. Cell biology E-book. Elsevier Health Sciences.
 Sutiman, B.S., Widyarti, S., Sofy P., 2017. Biologi Sel, UB Press,
Malang.
77
Module Handbook
Ecology
Module Name: Ecology

-
Dr. Catur Retnaningdyah, M.Si.
module:
Lecturer(s): 1. Dr. Catur Retnaningdyah, M.Si.
2. Dr. Endang Arisoesilaningsih
4. Zulfaidah Penata Gama, PhD
5. Viky Vidayanti, M.Si
Bachelor Programme
Compulsory Odd
in Biology
Contact hours per

week
Lectures 2.5 40
assignment &
6.0 40
independent

ECTS
5.3 6.0 181.3 6
55%.
Recommended prerequisites Passed on:
1. Diversity of Flora (MAB62005)
2. Practice in Diversity of Flora (MAB62006)
3. Diversity of Fauna (MAB62007)
78
4. Practice in Diversity of Fauna (MAB62008)
learning outcomes



CLO 1. Able to master the concept of Ecology theoretically and its

application (ILO 2)
CLO 2. Conduct analysis and synthesis of boundaries, scope and concepts

in Ecology (ILO 2, ILO 3, ILO 6)
CLO 3. Have the skills to observe ecological phenomena using standard

laboratory equipment/instruments (ILO 3, ILO 4)
CLO 4. Able to complete taSCU in groups related to ecological analysis

techniques to overcome environmental problems (ILO 2, ILO 3, ILO 4, ILO
6,7 ILO)
CLO 5. Have the skills to search, read, create a resume, share & discuss
some information related to ecology in Indonesian and English in groups
(ILO 2, ILO 4, ILO 6 and ILO 7).
Content 1. Lecture contract and introduction: Scope, objectives, teaching strategy
& evaluation, boundaries and division of Ecology. The concept of
minimum law, limiting factors, limits of tolerance range and its changes
in the era of global warming. Environmental abiotic factors: climate,
edaphic, geographical, waters. Impact of human activities on
environmental abiotic factors
2. Population Ecology: General character of population, growth model,
population density estimation, population distribution
3. Habitat, niche and bioindicators. Intra- and inter-population interactions.
Population regulation and stability
4. The concept of community: Definition of community; Community
characteristics, structure and classification; Similarity-dissimilarity
concept community; Continuity/discontinuity concept, Edge effect and
ecotone.
5. The concept of community change: Types of change in the community.
Characteristics and mechanisms of succession. Climax concept
79
6. Ecosystem concept and energy flow: Ecosystem concept: boundaries
and components of terrestrial and aquatic ecosystems. Transformation
and energy flow: the role of the I and II laws of thermodynamics in
ecosystems. Trophic levels, concepts of energy flow, energy
conversion and efficiency at each trophic level. The ecological pyramid:
its shape, advantages and disadvantages in describing the flow of
energy. Ecological efficiency. Homeostatic mechanisms and their
interactions with natural sustainability.
7. Evolutionary ecology: Evolution of the biosphere. Natural selection and
adaptation. Speciation and biodiversity. Sympatric and allopatric
speciation
8. Animal behavior, territoriality and home range: Behavioral responses
and adaptations of organisms to the environment. Home range and
territoriality.
9. Feeding behavior, food availability and biological control: Diet:
Monophagy, oligophagy and polyphagy. Chain and food web. Food
selection criteria: nutritional value, digestibility, size and availability of
food. Predation, parasitism, parasitoidism and biological control.
10. Application of ecological concepts for ecosystem management and
solving environmental problems
 Mid and final test
 Lab report in form of poster
 Pre/post-test
Final score = assignment/ quiz (15%)+Student presentation

(20%)+Pre/post-test (7.5)+Lab report (8.75)+Presentation of lab
results (8.75)+Mid test (20%)+Final test (20%)
LCD, laptop, google classroom, video conference (zoom/gmeet),
Media employed
GPS
Reading list  Fath, B.D., 2018. Encyclopedia of ecology. Elsevier.
 Odum, E.P. & Barrett, G.W. 2017. Fundamentals of Ecology. 5th Ed.
Thomson Brooks/Cole Learning, Australia
 Molles, M.C. & Sher, A.A. 2019. Ecology: Concepts and Applications,
8nd Ed. McGraw-Hill Education, Boston.
 Krebs, C.J. 2008. Ecology: The Experimental Analysis of Distribution
and Abundance. 6th Ed. Pearson Publsh.
 Riisgard, H.U. 2017. General Ecology: Outline of contemporary
ecology for university students, 1st edition, bookboon.com
 Slingsby, D. and Cook, C., 2016. Practical ecology. Macmillan
International Higher Education.
 Wheater, C.P., Bell, J.R. and Cook, P.A., 2020. Practical field ecology:
a project guide. John Wiley & Sons..
80
Module Handbook
Genetics
Module Name: Genetics

-
Person responsible for the Prof. Dr. Ir. Estri Laras Arumingtyas, M.Sc.St.
module:
Lecturer(s): 1. Prof. Dr. Ir. Estri Laras Arumingtyas, M.Sc.St.
2. Prof. Fatchiyah, M.Kes., Ph.D
Bachelor Programme
Compulsory Odd
in Biology
Contact hours per

week
Lectures 2.5 40
assignment &
6.0 40
independent

ECTS
5.3 6.0 181.3 h 6
55%.
learning outcomes
81


CLO 1. Able to explain the character of genes, the relationship between

alleles, the relationship between genes, the pattern of inheritance of traits
both Mendelian and molecular.
CLO 2. Have the skills of chromosomal preparation, analysis of various

patterns of inheritance, designing and analyzing data to solve genetic
problems, as well as being responsible and actively contributing to a
working group.
Content 1. Mendelism: monohybrid, dihybrid, segregation, independent

assortment
2. The theory of probability and inheritance
3. Mendelian exceptions: allele interactions, gene interactions,
polygenes, multiple alleles, sex determination, sex-linked
4. Sexual and asexual reproduction in relation with alternation of
generations, sex linked characteristics and their transmission
5. Structure and function of chromosomes and genes (DNA)
6. Genetic code, transcription, translation and protein
7. Extrachromosomal DNA (plasmid DNA, mitochondrial DNA,
chloroplast DNA) and Cytoplasmic inheritance
8. Mitosis and meiosis, the relation with cell cycle, chromosome
movements and definitions of haploid and diploid
9. Chromosomes, chromosomal variations and chromosomal
abnormalities
10. Structure and details of DNA duplication including details of
DNA polymerase.
11. DNA mutation and repair
12. Linkage, crossing over and recombination
13. Chromosomal mapping
14. Population Genetics
82
 Pre/post-test
 Lab report

Reading list  Clark, D.P. 2005. Molecular Biology. Understanding the genetic
revolution. Elsevier Academic Press. London.
 Snustad, D.P. and Simmons, M.J., 2015. Principles of genetics.
John Wiley & Sons.
 Surya. 1991. Genetika Manusia. Gadjah Mada University Press.
Yogyakarta;
 Waddington, C.H., 2016. An introduction to modern genetics.
Routledge.
83
Module Handbook
General Microbiology
Module Name: General Microbiology

-
Semester/term: 4th semester
Irfan Mustafa, M.Si, Ph.D
module:
Lecturer(s): 1. Dr. Suharjono, M.Si
2. Tri Ardyati, M.Agr, Ph.D
3. Irfan Mustafa, M.Si, Ph.D
4. Yoga Dwi Jatmiko, M.App.Sc., Ph.D
Bachelor Programme
Compulsory Even
in Biology
Contact hours per

week
Lectures 1.7 40
assignment &
4.0 40
independent

ECTS
7.4 4.0 182.4 h 6
55%.
 General Biology (MAB61001)
 Biochemistry and Instrumentation (MAB61014)
84
 Cell Biology (MAB61015)
learning outcomes



CLO 1. Can explain and understand the principle of different

characteristics, and perform characterization and identification of various
microorganisms (ILO 2, ILO 4, ILO 6, ILO 7)
CLO 2. Can explain and understand the principles of growth, metabolism

and genetics of microorganisms and their application to humans and the
environment (ILO 2, ILO 3, ILO 4, ILO 6, ILO 7)
CLO 3. Can explain and perform various basic techniques needed in

microbiology laboratories (ILO 2, ILO 3, ILO 4, ILO 6)
CLO 4. Complete assignments, discuss and present them well (ILO 6, ILO
7)
Content 1. History and scope of microbiology
2. Structure and function: prokaryotic and eukaryotic cells
3. Characteristics of bacteria, fungi, protozoa, microalgae, and viruses
4. Microbial culture and growth
5. Transport of nutrients across cell membranes
6. Metabolism in energy conservation and biosynthesis
7. Microbial genetics and genetic engineering
8. Microbial evolution and systematics
9. Application of microbes in the fields of environment, food, and
medicine
 Lab report
 Pre/post-test
85
Class score (CS): Paper project (10%), quiz (10%), presentation

Practice score (PS): Report (30%), pre/post-test (15%), presentation
Media employed LCD, laptop
Reading list  Brown, A. and Smith, H., 2014. Benson’s Microbiological Applications,
Laboratory Manual in General Microbiology, Short Version. McGraw-
Hill Education.
 Madigan et al., 2019, Brock Biology of Microorganisms 15th edition,
Pearson Education.
 Jacquelyn G. Black and Laura J. Black, 2017, Microbiology: Principles
and Explorations, 10th Edition, Wiley Publisher.
 Suharjono et al., 2021, Pedoman Praktikum Mikrobiologi Umum,
Jurusan Biologi – Universitas Brawijaya.
 James G. Cappuccino and Natalie Sherman, 2014, A Laboratory
Manual, 10th edition, Pearson Education.
 Laskin, A.I., 2019. Handbook of Microbiology: Condensed Edition.
CRC press.
 Lud Waluyo, 2019, Mikrobiologi Umum, cetakan kelima, UMM Press.
86
Module Handbook
Plant Physiology
Module Name: Plant Physiology

-
Person responsible for the Dr. Dra. Wahyu Widoretno, MSi.
module:
Lecturer(s): 1. Dr. Dra. Wahyu Widoretno, MSi.
2. Dra. Nunung Harijati, MS., PhD.
3. Ir. Retno Mastuti, M.Agr.Sc., D.Agr.Sc.
4. Dr. Dra. Aminatun Munawarti, MSi.
5. Dian Siswanto, S.Si., M.Sc.,M.Si.,Ph.D
Bachelor Programme
Compulsory Even
in Biology
Contact hours per

week
Lectures 2.5 40
assignment &
6.0 40
independent

ECTS
5.3 6.0 181.3 h 6
55%.
87
 Plant Structure and Development (MAB62009)
 Practice in Plant Structure and Development (MAB62010)
learning outcomes



CLO 1. Able to understand the concepts related to physiological processes
that occur in plants comprehensively.
CLO 2. Mastering the application of plant physiology in the scope of botany
and agriculture.
CLO 3. Able to perform simple analysis and synthesis of plant performance
in the field based on their physiological conditions.
CLO 4. Able to utilize the science of plant physiology to solve simple
problems through the application of biological knowledge, biological
analysis methods, and the application of relevant technology.
CLO 5. Mastering instruments related to the field of plant physiology
studies.
CLO 6. Have responsibility in completing lectures and plant physiology
practicum assignments and skilled/capable in making the right
decisions based on analysis of information and practicum data as
well as supporting references.
CLO 7. Able to communicate and provide input in discussion group work
and practicum related to understanding Plant Physiology material.
Content 1. Definition and scope of plant physiology,
2. Water and plant cells,
3. Transport of nutrients and water,
4. Transpiration,
5. Photosynthesis,
6. Translocation within the phloem,
7. Respiration,
8. Nitrogen and lipid metabolism, assimilation of mineral nutrients,
9. Secondary metabolites and plant defenses,
10. Types and roles of hormones in plant growth and development
11. Phytochromes and light control on plant development,
12. Flowering control: photoperiodism and vernalization,
13. Physiology of stress in plants
88
 Paper project
 Presentation
 Pre/post-test
 Lab report
 Presentation
Class score (CS) : Paper project (10%), quiz (15%), presentation

Practice score (PS) : Report (30%), pre/post-test (20%), presentation
Final score : {3 (CS) + 1 (PS)}/4
Reading list  Jenks, M.A.and P.M. Hasegawa. 2005. Plant Abiotic Stress. Blackwell
Publishing Ltd.
 Opik, H. and S. Rolfe. 2005 The Physiology of Flowering Plants.
Cambridge University Press. Cambridge, New York.
 Taiz L.and E. Zeiger. 2002. Plant Physiology. Sinauer Associates, I nc.
Publishers. Sunderland, Massachusetts.
 Taiz L, Zeiger E, Møller IM, and Murphy A. 2015. Plant Physiology and
Development, Sixth Edition. Sinauer Associates, Inc, Sunderland,
Massachusetts U.S.A
 Pallardy, S.G. 2008. Physiology of woody plants. Elsevier Inc, New
York.
 Pessarakli, M. 2001. Handbook of Plant and Crop Physiology Marcel
Dekker,Inc. NewYork
89
Module Handbook
Biodiversity Conservation
Module Name: Biodiversity Conservation

-
Person responsible for the Dr. Endang Arisoesilaningsih
module:
Lecturer(s): 1. Dr. Endang Arisoesilaningsih
3. Dr. Catur Retnaningdyah, M.Si.
4. Zulfaidah Penata Gama, M.Si., Ph.D
Bachelor Programme
Compulsory Even
in Biology
Contact hours per

week
Lectures 1.7 40
assignment &
4.0 40
independent
Laboratory practice &
11.3 40
field study
laboratory session, mini project etc.) and private/self-study, including
examination preparation, self assessment, specified in hours

ECTS
13 4.0 272 h 9
55%.
Recommended prerequisites Passed on Ecology (MAB61016)
learning outcomes
90




ILO 8. Able to understand and has basic entrepreneurship

characters relevant to biology.
Course learning outcomes (CLO) after completing this module: Able to
CLO 1. Explain and give examples of the scope, value, quality, role,
mapping, threat and extinction of biodiversity in the modern biology (ILO 2).
CLO 2. Explain and give examples of paradigms, status, economic values

and conservation policies (ILO 2).
CLO 3. Apply the concepts of ecology, population dynamics and genetics

to analyze the causes and overcome the extinction of biodiversity both in
situ and ex situ (ILO 2).
CLO 4. Apply several diversity analysis techniques (genetic, species and

ecosystem) and their mapping to support biodiversity conservation (ILO 3).
CLO 5. Apply some techniques of strategic problem analysis (ILO 3).
CLO 6. Analyze biodiversity in the laboratory and in the field independently

according to standard methods, taking into account bioethics, as well as
personal and environmental safety (ILO 4).
CLO 7. Solve biodiversity conservation problems for sustainable

development according to standard methods by applying ecological
concepts, other relevant sciences and multimedia (ILO 5).
CLO 8. Communicate well in Indonesian and English to gather information,

to prepare discussion, reports, presentations in scientific forums (ILO 6).
91
CLO 9. Communicate well in Indonesian and English to share science and
technology to mobilize community participation in biodiversity conservation
(ILO 6).
CLO 10. Contribute as a multilayer leader and to build a solid team work in
completing taSCU by respecting biodiversity (ILO 7).
CLO 11. Understand the important role of fundraising by strengthening

development of entrepreneurial characters related to biology for
biodiversity conservation (ILO 8).
Content 1. Introduction
2. Scope, value, status, quality of biodiversity (genetic, species and
ecosystem, α-β-γ diversity).
3. Plant & Vertebrate diversity assessment
4. Community structure, taxa richness, diversity indices, diversity quality
indices
5. Invertebrate & aquatic animal diversity assessment, spatial &
temporal
6. Ecosystem diversity assessment & landscape ecology. Mapping
genetic, species & ecosystem diversity
7. Genetic diversity & biological globalization
8. New paradigm, status, economic value & policy in biodiversity
conservation. Fundraising
9. Models for strategic conservation planning
10. Developing & proposing action plan. Reviewing, revising action plan
on biodiversity conservation.
11. Implementing action plan
12. Implementing & progress report of action plan
13. Evaluating action plan
14. Academic peer review progress & final report
requirements and forms of  Assignment & Quiz
examination  Action plan project
 Presentation (problem-based learning progress report)
Form of examination in laboratory practice & field work:
 Pre/post-test
 Practical report
 Presentation
 Self-assessment test
Final score: mid test (20%) + final test (20%) + lab practice (25%) +
Individual assignment/quiz (10%) + Action plan (15%) + Problem based
learning progress report (10%).
LCD, laptop, Google classroom, video conference (zoom/Gmeet),
Media employed
Google Earth, MSOffice
92
Reading list Main references:
 Casetta, E., J. M. da Silva, D. Vecchi. 2019. From Assessing to
Conserving Biodiversity. Conceptual and Practical Challenges.
Springer Open. Cham.
 Dodd, C. K. 2016. Reptile Ecology and Conservation. A Handbook of
Techniques. Oxford University Press. Oxford
 Foottit, R. G., P. H. Adler. 2017. Insect Biodiversity: Science and
Society. Wiley-Blackwell. New Jersey.
 Graney, R.L. 2020. Aquatic Mesocosm Studies in Ecological Risk
Assessment. CRC Press. Boca Raton
 Rojas, R. V. 2020. State of Knowledge of Soil Biodiversity. Status,
challenges and potentialities. Food and Agriculture Organization of
the United Nations. Roma.
Additional references:
 Yonghong, W. 2017. Periphyton: Functions and Application in
Environmental Remediation. Elsevier. Amsterdam
 Tomback, D. F. 2017. Biodiversity and Conservation in Forests.
MDPI. Basel.
93
Module Handbook
Entrepreneurship
Module Name: Entrepreneurship

-
Person responsible for the Dr. Aminatun Munawarti, M.Si.
module:
Lecturer(s): 1. Dr. Aminatun Munawarti, M.Si.
2. Prof. Luchman Hakim, S.Si., M.Agr.Sc., Ph.D
Bachelor Programme
Compulsory Even
in Biology
Contact hours per

week
Lectures 0.8 40
assignment &
2.0 40
independent

ECTS
3.6 2.0 90.7 h 3
55%.
learning outcomes
94



CLO 1. Able to understand the principles of entrepreneurship and have the

mindset and basics of entrepreneurial management.
CLO 2. Able to prepare business plans and carry out business simulations
with a modern business management approach.
CLO 3. Able to be motivated in developing an entrepreneurial spirit based

on the knowledge gained.
CLO 4. Able to communicate and work together in a team to analyze,

compile, and present plans and business results in presentations.
Content 1. The basic concept of entrepreneurship: Creativity and Innovation

2. Explanation of the preparation of business proposals
3. Business Planning: Management strategy, marketing strategy and
financial planning (BEP)
4. Biological Business Opportunities
5. Business Model Canvas: A tool for designing business models
6. Entrepreneurship Soft skills: Entrepreneurial leadership and
emotional intelligence
7. Personal Branding as the Main Capital of Young Entrepreneurs in the
Digital Age
 Paper project
 Presentation
 Pre/post-test
 Lab report
 Presentation
95
Class score (CS) : Paper project (10%), quiz (15%), presentation

Practice score (PS) : Report (30%), pre/post-test (20%), presentation
Reading list  Sinha, D., Singh, A. and Kumar, P., 2021. Introduction to
Bioentrepreneurship. In Bioentrepreneurship and Transferring
Technology Into Product Development (pp. 1-21). IGI Global.
 Nitisastro, M. 2017. Kewirausahaan dan Manajemen Usaha Kecil.
Alfabeta.
 Fayolle, A., & Klandt, H. (Eds.). 2006. International entrepreneurship
education: Issues and newness. Edward Elgar Publishing.Griiffin,
R.W. & R.J. Ebert. 2007. Bisnis. Edisi ke-8. Alih Bahasa; Sita
Wardhani. Erlangga.
 Sari, A.,P., Anggraini, D.D., Sari, M.H.N., Gandasari, D., Siagian, V.,
Septarini, R.S., Tjiptadi, D.D., Sulaiman, O.K., Munsarif, Siregar, P.A.,
Nugraha, N.A., Simarmata, J. 2000. Kewirausahaan dan Bisnis Online.
Kita Menulis.
 Storey, D. J., & Greene, F. J. 2010. Small business and
entrepreneurship. Financial Times Prentice Hall.
 Meredith, G.G., Nelson R. E., Neck P.A. 1995. Kewirausahaan : Teori
dan Praktik. Penerjemah Andec Asparsayogi. Lembaga PPM bekerja
sama dengan PT. Pustaka Binaman Pressindo. Jakarta.
 Zimmerer T.W. Scarborough N.M. 2002. Pengantar Kewirausahaan
dan Manajemen Bisnis Kecil. Penerjemah Yanto Sidik Puatiknyo dan
Edina Tjahyaningsih Tarmidzi. Prenhallindo. Jakarta.
 Lambing P.A. & Kuehl C.R. 2003. Entrepreneurship. Third Edition.
Prentice Hall. New Jersey.
 Hisrisck R.D., Refers M.P. 2002. Entrepreneurship. International
Edition. McGraw Hill Higher Education. Singapore.
96
Module Handbook
Introduction to Biotechnology
Module Name: Introduction to Biotechnology

-
Person responsible for the Mufidah Afiyanti, S.P., Ph.D
module:
Lecturer(s): 1. Mufidah Afiyanti, S.P., Ph.D
3. Dr. Aminatun Munawarti, M.Si.
4. Dr. Sri Rahayu, M.Kes
Bachelor Programme
Compulsory Even
in Biology
Contact hours per

week
Lectures 1.7 40
assignment &
4.0 40
independent
Laboratory practice - -

ECTS
1.7 4.0 90.7 h 3
Credit point 2 credit points (SCU)
55%.
learning outcomes
97


CLO 1. Able to explain conventional and modern biotechnology including

its methodology.
CLO 2. Able to explain the application of biotechnology on microbes, plants

and animals based on scientific papers in solving problems in human life.
CLO 3. Able to explain the basics of biotechnology in general, principles

and applications of biotechnology engineering in microbes, plants and
animals.
Content 1. Learning contract; Basics and general application of biotechnology:

Introduction
2. Basics and applications of conventional and modern biotechnology
3. The basics of cloning in microbes
4. Biotechnology applications in microbes
5. The basics of cloning in plants
6. Biotechnology applications in plants
7. Transgenic plants and tissue culture
8. The basics of cloning in animals
 Presentation
Final score: Quiz (25%) + Presentation (35%) + mid exam (20%) +

final exam (20%)
Reading list  Moo-Young, M., 2019. Comprehensive biotechnology. Elsevier.
 Glick, B.R. and Patten, C.L., 2017. Molecular biotechnology:
principles and applications of recombinant DNA (Vol. 34). John Wiley
& Sons.
 Gupta, V., Sengupta, M., Prakash, J. and Tripathy, B.C., 2017. Basic
and applied aspects of biotechnology. Singapore: Springer
Singapore.
 Clark, D.P. and Pazdernik, N., 2015. Biotechnology. Newnes.
98
 Abdin, M.Z., Kiran, U. and Ali, A. eds., 2017. Plant biotechnology:
principles and applications. Singapore: Springer.
 Renneberg, R. and Loroch, V., 2016. Biotechnology for beginners.
Academic Press.
 Das, S. and Dash, H.R., 2014. Microbial biotechnology-a laboratory
manual for bacterial systems. Springer.
 Gahlawat, S.K., Duhan, J.S., Salar, R.K., Siwach, P., Kumar, S. and
Kaur, P. eds., 2018. Advances in animal biotechnology and its
applications. Springer.
 Renneberg, R. and Loroch, V., 2016. Biotechnology for beginners.
Academic Press.
 Slataer A., N.Scott, M. Fowler. 2003. Plant Biotechnology. The
genetic manipulation of plants. Oxford university Press;
 Srivastava, P.S., A. Narula, S. Srivastava. 2005. Plant Biotechnology
and Molecular Markers. Kluwer Academic Publishers, New York.
 Verma, A.S. and Singh, A. eds., 2013. Animal biotechnology: models
in discovery and translation. Academic Press.
99
Module Handbook
Community Service
Module Name: Community Service

-
Semester/term: Inter-semester (between 4th and 5th)
Person responsible for the Dian Siswanto, S.Si., M.Sc., M.Si.,Ph.D (Head of Study Programme)
module:
Lecturer(s): 1. Dian Siswanto, S.Si., M.Sc., M.Si.,Ph.D (Head of Study Programme)
2. Supervisors of community service programme
Bachelor Programme
Compulsory Odd
in Biology
Contact hours per

week
Lectures - -
assignment &
- -
independent
Community service 11.3 40

ECTS
11.3 - 181.3 h 6
Requirement according to the
In order to pass the course, student must obtain a minimal score of 55%.
examination regulations
learning outcomes
100



CLO 1. Able to explain the scope and objectives of Community Service
activities.
CLO 2. Able to explain the role of humans in development and their impact
on the environment and resources
CLO 3. Able to explain the paradigm of community empowerment and
resource conservation
CLO 4. Able to organize Community Service participants
CLO 5. Able to arrange Community Service activity programs
CLO 6. Able to set targets for Community Service activities
CLO 7. Able to establish communication with the community
CLO 8. Able to explain Community Service programs to the community
CLO 9. Able to run activity programs in the field
CLO 10. Able to explain the work program that has been carried out,
successes, problems and strategies / follow-up plans in completing
the program
CLO 11. Able to comprehensively elaborate data related to the program,
progress, and follow-up plans
CLO 12. Able to write Community Service reports well and follow
applicable writing standards
CLO 13. Able to comprehensively explain the achievements of Community
Service activities
Content  Introduction of Community Service Program based on
Conservation
 Human, natural resource development and conservation
 Empowerment principles and strategies
 Implement field programs
 Presentation of the results that have been achieved by students
 Discussion and verification of the results of student activities in
the field
 Discussion of the follow-up plan for program implementation
examination  Oral exam
 Program participation
Final score: report (40%) + oral exam (40%) + program participation

(20%)
101
Media employed LCD, laptop
Reading list Direktorat penelitian dan pengabdian kepada masyarakat direktorat
jenderal pendidikan tinggi kementerian pendidikan dan kebudayaan. 2013.
Panduan Pelaksanaan Hibah Kuliah Kerja Nyata -
Pembelajaran Pemberdayaan Masyarakat (KKN-PPM).
102
Module Handbook
Molecular Biology
Module Name: Molecular Biology

-
Person responsible for the Prof. Dra. Fatchiyah, M.Kes.,Ph.D.
module:
Lecturer(s): 1. Prof. Dra. Fatchiyah, M.Kes.,Ph.D.
2. Prof. Dr.Ir. Estri Laras Arumingtyas, M.Sc.St.
3. Dr. Sri Widyarti, MS.
Bachelor Programme
Compulsory Odd
in Biology
Contact hours per

week
Lectures 1.7 40
assignment &
4.0 40
independent

ECTS
1.7 4.0 90.7 h 3
55%.
 Genetics (MAB61017)
103


CLO 1. Able to explain the basic concepts and perspectives of molecular

biology.
CLO 2. Able to describe the structure of DNA, RNA-RNA, and

chromosome models as well as the enzymes that play a role.
CLO 3. Able to compare the process of protein synthesis or gene

expression in both prokaryotes and eukaryotes, as well as explain the
mechanism of DNA replication and the enzymes that play a role.
CLO 4. Able to distinguish homologous recombinant, site-specific

recombinant and transposition mechanisms.
CLO 5. Able to explain gene regulation and gene expression regulation

pathways.
CLO 6. Able to determine and characterize protein structures.
CLO 7. Able to explain the comparison of DNA and protein interactions or

protein with protein.
CLO 8. Able to explain the role of molecular biology in an applicative way

in plants and bacteria as well as in the biomedical field.
Content 1. Molecular structure of genes and chromosomes
2. Gene transcription process in protein synthesis
3. Gene translation process in protein synthesis
4. DNA replication
5. Regulatory mechanisms in general at cellular & molecular
level
6. Mechanism of gene regulation in prokaryotes
7. Mechanisms of gene regulation in eukaryotes
8. Basic structure of proteins: determination & classification
9. Protein modification
10. Functional Proteins
11. Interaction between DNA-Protein & Protein-Protein
examination  Assignment/ paper project
104
 Presentation
 Class participation during discussion
Final score: Quiz (10%) + Assignment/ paper project
(10%) + class participation (10%) + mid exam (40%) + final exam
(20%).
Reading list  Allison, L.A., 2021. Fundamental molecular biology. John Wiley &
Sons.
 Jain, A., Jain, R. and Jain, S., 2020. Basic Techniques in Biochemistry,
Microbiology and Molecular Biology (pp. 235-242). New York, NY,
USA:: Springer.
 Twyman, R., 2018. Advanced molecular biology: a concise reference.
Garland Science.
 Alberts B. Johnson A, Lewis J., Raff M., Robert K, Walter P. 2002.
Molecular Biology of Cell. 4th Ed. Garland Science.
www.classwire.com/garlandscience
 Collins FS, ED. Green, AE. Guttmacher and MS. Guyer. 2003. A vision
for the future of genomics research : A blueprint for the genomics era.
Nature 422 : 1-13.
 Horton HR, LA. Moran, RS. Ochs, JD. Rawn, KG. Scrimngeour. 2002.
Principles of Biochemistry. 3rd Ed. Pearson Education International.
(864 pages) www.prenhall.com/horton
 Lodish H., Berk A., Matsudaira P., Kaiser CA., Krieger M., Scott MT.
Zipursky SL., Darnell J. 2004. Molecular Cell Biology. 5 th Ed. WH.
Freeman. www.whfreeman.com/lodish
 McKee T. & JR. McKee. 2003. Biochemistry: The molecular Basis of
Life. 3rd Ed. McGraw-Hill. (771 pages) www.mhhe.com/mckee
 Nelson, DL. & MM.Cox. 2005. Lehninger : Principles of Biochemistry.
4th Ed. WH. Freeman. (1400 pages) www.whfreeman.com/lehninger
 Strachan T & Read Ap. 2004. Human Molecular Genetics. 3rd Ed.
Garland Science. www.classwire.com/garlandscience/strachan
 Weaver RF. 2003. Molecular Biology. 2nd Ed. McGraw-Hill.
www.mhhe.com/weaver
 Fatchiyah, Sri Widyarti, Estri Laras Arumingtyas, Sri Rahayu, 2011.
Biologi Molekuler: Prinsip Dasar Analisis. Penerbit Erlangga, Jakarta.
 Ausubel FM., Brent R., Kingston RE., Moore D., Seidman JG. Smith
JA. Struhl K. 2002. Short Protocols in Molecular Biology. 5rd Ed. John
Wiley & Sons.
 GeneBank: NCBI
www.ncbi.nlm.nih.gov/http://www.ddbj.nig.ac.jp/http://www.ebi.ac.uk/
 Innis MA. Gelfand DH., Sninsky JJ. 1999. PCR Application Protocol for
Functional Genomics. Academics Press
 Sambrook J. & Russel DW. 2001. Molecular Cloning: A laboratory
manual. Cold Spring Harbor. www.cshl.org/sambrook
 Bollag DM., & Edelstein SJ. 1991. Protein Methods. A John Wiley &
Sons.
 Robyt JF & White BJ. 1990. Biochemical Techniques: Theory &
Practice. Brooks/Cole Pub.
 Wilson K & Walker J. 2004. Principles & Techniques of Practical
Biochemistry. 4th Ed. Cambridge University Press.
105
www.cup.cam.ac.uk/wilson
106
Module Handbook
Practice in Molecular Biology
Module Name: Practice in Molecular Biology

-
Person responsible for the Prof. Dra. Fatchiyah, M.Kes.,Ph.D.
module:
Lecturer(s): 1. Prof. Dra. Fatchiyah, M.Kes.,Ph.D.
2. Prof. Dr.Ir. Estri Laras Arumingtyas, M.Sc.St.
3. Dr. Sri Widyarti, MS.

Bachelor Programme
Compulsory Odd
in Biology
Type of teaching, contact hours:
Contact hours and class size separately for each teaching method: lecture,
Contact hours per

week
Lectures - -
assignment &
- -
self-study)

ECTS
5.7 - 90.7 h 3
Credit point 2 credit units (sks)
Requirement according to the A student must have attended at least 80% of the laboratory practice to sit
examination regulations in the exams. In order to pass the course, student must obtain a minimal
score of 55%.
107
learning outcomes
ILO 3. Able to understand the methodology of biological science and its
application in a bio-conservation perspective.

compliance with the standard methodology of biology concerning bioethics
and safety.
ILO 5. Able to solve problems based on scientific methods by applying

biological sciences, biological analysis methods and technological
applications.
CLO 1. Able to perform the basic techniques of detection and analysis of

proteins and nucleic acids in order to cover different levels of a research in
molecular biology and genetics.
CLO 2. Able to cognize basic concepts and terminology of the main

techniques of molecular biology.
CLO 3. Able to develop practical laboratory skills, generate raw

experimental data, and work safely and efficiently in a molecular biology
laboratory.
CLO 4. Able to collect and correlate the information obtained and knowing
how to present in the form of a scientific report either individually or in a
teamwork.
Content 1. Briefing and placement test
2. Basic Use of Micropipettes and Sampling Techniques
3. DNA isolation
4. Quantitative and Qualitative Test of DNA
5. Protein Isolation
6. Protein Quantitative Test (Standard curve calculation)
Study and examination Form of examination in lab practice:

requirements and forms of  Placement-test
 Assignment
 Mid and Final lab test
 Attitude during lab practice
Final score (NA) is calculated as follow: Placement-test

(10%) + lab report (20%) + assignment (15%) + attitude (5%) + mid
exam (25%) + final exam (25%)
108
Reading list  Jain, A., Jain, R. and Jain, S., 2020. Basic Techniques in Biochemistry,
USA:: Springer.
 Alberts B. Johnson A, Lewis J., Raff M., Robert K, Walter P. 2002.
Molecular Biology of Cell. 4th Ed. Garland Science.
www.classwire.com/garlandscience
 Ausubel F. M., et. al. (Ed), 2002. Short protocols in molecular biology:
a compendium of methods from current protocols in molecular
biology, 5th Ed. (2 volumes), John Wiley & Sons, Inc., New Jersey.
Sons.
 Fatchiyah, Sri Widyarti, Estri Laras Arumingtyas, Sri Rahayu, 2011.
Biologi Molekuler: Prinsip Dasar Analisis. Penerbit Erlangga, Jakarta.
 Innis MA. Gelfand DH., Sninsky JJ. 1999. PCR Application Protocol
for Functional Genomics. Academics Press.
 Lodish H., Berk A., Matsudaira P., Kaiser CA., Krieger M., Scott MT.
Zipursky SL., Darnell J. 2004. Molecular Cell Biology. 5th Ed. WH.
Freeman. www.whfreeman.com/lodish
 McKee T. & JR. McKee. 2003. Biochemistry: The molecular Basis of
Life. 3rd Ed. McGraw-Hill. (771 pages) www.mhhe.com/mckee
 Nelson, DL. & MM.Cox. 2005. Lehninger : Principles of Biochemistry.
4th Ed. WH. Freeman. (1400 pages) www.whfreeman.com/lehninger
 Sambrook J. & Russel DW. 2001. Molecular Cloning: A laboratory
 Tagu D. & Moussard C., 2006. Techniques for molecular biology.
Taylor and Francis Group, Science Publishers, New Hampshire.
 Weaver RF. 2003. Molecular Biology. 2nd Ed. McGraw-Hill.
www.mhhe.com/weaver
109
Module Handbook
Animal Embryology
Module Name: Animal Embryology

-
Person responsible for the Dr. Sri Rahayu, M.Kes.
module:
Lecturer(s): 1. Dr. Sri Rahayu, M.Kes.
2. Prof. Dr. Ir. Moch. Sasmito Djati, M.Si., IPU.
3. Dr. Agung Pramana Warih M, M.S.
4. Drs. Aries Soewondo, M.Si.
Bachelor Programme
Compulsory Odd
in Biology
Contact hours per

week
Lectures 1.7 40
assignment &
4.0 40
independent

ECTS
4.5 4.0 136 h 4.5
55%.
Recommended prerequisites Passed on Animal Anatomy and Physiology (MAB61013)
110
learning outcomes


CLO 1. Mastering theoretical concepts or their application in one field

(intradisciplinary) and performing simple analysis and synthesis in solving
problems in the field of embryonic development.
CLO 2. Able to design and present alternative solutions to problems related

to embryonic development.
CLO 3. Having responsibility in completing taSCU as part of the

organization and able to provide input in a work team.
Content 1. Basic understanding of embryology, embryological theories
2. Gametogenesis: Spermatogenesis, Oogenesis
3. Fertilization and Cleavage
4. Asexual reproduction (Parthenogenesis/ pedogenesis)
5. Embryonic division patterns
6. Gastrulation and neurulation
7. Morphogenesis and Organogenesis
8. Hatching pattern of Oviparous /Viviparous /Ovoviviparous and
parturition animals
9. Metamorphosis
10. Teratogenesis
 Pre/post-test
 Lab report

111
Reading list  Gilbert, SF and Baarresi, MJM 2018, Developmental Biology. 11th
Edition. Sinaur Associate Inc. Sunderland, USA
 Peledri, FJ 2019, Vertebrate Embryogenesis, Second Edition.
Humana Press, USA
 Sadler TW 2017, Medical Embryology, 12th Edition, Lippincott
Williams and Wilkins, Tokyo
 Slack JMW 2012, Essential Developmental Biology, Second Edition,
Blackwill Publishing. USA
112
Module Handbook
Microtechnique
Module Name: Microtechnique

-
Person responsible for the Dra. Nunung Harijati, M.S., Ph.D
module:
Lecturer(s): 1. Dra. Nunung Harijati, M.S., Ph.D
2. Dr. Serafinah Indriyani, M.Si.
Bachelor Programme
Compulsory Odd
in Biology
Contact hours per

week
Lectures 0.8 40
assignment &
2.0 40
independent

ECTS
6.5 2.0 136 h 4.5
55%.
 Animal Histology (MAB62011)
113
learning outcomes



CLO 1. Able to operate simple and complex microscopes properly and
correctly.
CLO 2. Able to read material safety data sheets.
CLO 3. Able to do plant tissue clearing.
CLO 4. Able to make cytology preparations.
CLO 5. Able to make semi-permanent plant preparations.
CLO 6. Able to make permanent plant and animal preparations.
CLO 7. Able to make whole mount animals.
CLO 8. Able to make blood smears.
Content 1. Eye alignment with the ocular lens: adjust the left and right
eyepieces to obtain a single field of view
2. Kohleran microscope so that the image can be photographed
optimally
3. The use of MSDS
4. Clearing and whole mount plants
5. Making cytology preparations
6. Making permanent plant preparations
7. Making permanent animal preparations
8. Making animal whole mount
9. Making animal smear
 Pre/post-test
 Lab report

114
Total score: (1A+2B)/3

Reading list  Harijati N., Samino S., Indriyani S., Soewondo A. 2017. Mikroteknik
Dasar. UB Press, Malang.
 Khasim SM. 2002. Botanical microtechnique: principles and practice.
Capital Publ.co., New Delhi.
 Marimuthu, R., 2019. Microscopy and Microtechnique. MJP Publisher.
 Ruzin SE. 1999. Plant microtechnique and microscopy. Oxford
University Press, New York.
 Sanderson, J., 2020. Biological microtechnique. Garland Science.
 Sigh RJ. 2003. Cytogenetics. CRC Press, New York.
 Yeung, E.C.T., Stasolla, C., Sumner, M.J. and Huang, B.Q. eds.,
2015. Plant microtechniques and protocols. Cham, Switzerland:
Springer International Publishing.
115
Module Handbook
Method of Bioresearch and Scientific Writing II
Module Name: Method of Bioresearch and Scientific Writing II

-
Person responsible for the Prof. Dr. Ir. Estri Laras Arumingtyas, M.Sc.St.
module:
5. Dr. Wahyu Widoretno, M.Si
6. Yoga Dwi Jatmiko, S.Si., M.App.Sc., Ph.D
Bachelor Programme
Compulsory Odd
in Biology
Contact hours per

week
Lectures 1.7 40
assignment &
4.0 40
independent

ECTS
1.7 4.0 90.7 h 3
55%.
116
Module objective/ intended ILO 1. Able to demonstrate academic integrity and the ability to
learning outcomes develop themselves through lifelong learning.

CLO 1. Able to fulfill the procedures and attend lectures and complete all
their duties and obligations with full responsibility.
CLO 2. Able to master the nature of science, scientific truth and bioethical
concepts.
CLO 3. Able to compile draft journal publications and able to formulate self-
profile to get grant.
CLO 4. Able to develop a research framework starting from the

background, problem formulation, research objectives and benefits based
on the most relevant literature on the research topic.
CLO 5. Able to choose and write research methods appropriately based on

the activity stages and relevant to the research objectives.
CLO 6. Able to present data in the right format, interpret data and discuss
based on relevant literature.
CLO 7. Able to draw conclusions and provide suggestions based on data

as well as compiling a bibliography and attachments based on applicable
regulations.
CLO 8. Able to compose essays.

Content 1. Bioethics in biological research and ethics of various scientific
communication techniques (oral and written) including
plagiarism issues, and learning contract.
2. Introduction: relevance of research title to background,
problem formulation, research objectives.
3. Search, selection and writing strategies of literature review.
4. Search strategy, selection and writing of research methods,
including social survey research.
5. Management, presentation, interpretation, narration of
research results data interpretation.
6. Dissemination – Journal publication: article structure – review
process, CV & application letter for Competition Grant.
7. Conclusion, suggestions, bibliography and appendix.

requirements and forms of  Quiz/post-test
examination  Assignment I (individual review)
 Assignment II (group review)
 Assignment III (making essay)
117
Final score: Quiz (20%) + Assignment I (25%) + Assignment II
(25%) + Assignment III (30%).
Reading list  Pant, D, Ram, M, Nautiyal, OP 2020, Scientific Methods Used in
Research and Writing. United States: Taylor & Francis Group.
 Thomas, CG, 2021 Research Methodology and Scientific Writing.
Germany: Springer International Publishing.
118
Module Handbook
Biological Research Design
Module Name: Biological Research Design

-
Person responsible for the Dr. Endang Arisoesilaningsih, M.S.
module:
Lecturer(s): 1. Dr. Endang Arisoesilaningsih, M.S.
2. Dr. Serafinah Indriyani, M.Si
3. Dr. Catur Retnaningdyah, M.Si.
Bachelor Programme
Compulsory Odd
in Biology
Contact hours per

week
Lectures 1.7 40
assignment &
4.0 40
independent

ECTS
4.5 4.0 136 h 4.5
55%.
learning outcomes
119

CLO 1. Able to explain several research designs from a bio-conservation

perspective (ILO 3).
CLO 2. Able to show three main examples of biological research designs:
biosocial surveys, experimental and non-experimental in solving problems
in the field of biology (ILO5).
CLO 3. Able to explain the application and develop three types of research
designs to solve problems from a bio-conservation perspective (ILO 5).
CLO 4 Able to communicate well in Indonesian and English in gathering
scientific information (ILO 6).
CLO 5. Skilled in working in teams using information systems to explain
and improve inappropriate research designs (ILO 7).
Content 1. Non-experimental research design: survey ethnobiology
2. Experimental research design
3. Non-experimental time series research design
The three topics discussed above include:
a. Title, problem, and research objectives
b. Data and research variables/variables
c. Research design and steps
d. Large/sample size
e. Research instruments and data collection techniques
f. The design of the data sheet table and the estimated
data to be obtained
g. Data validity and reliability
h. Data analysis, data presentation and interpretation
requirements and forms of  Quiz/ Assignment
examination  Mid and final exam
 Student presentation I, II, and III
Laboratory practice score: Student presentation I (25%)

+ Student presentation I (25%) + Student presentation I (25%) +
Class participation (25%).
Final score: Lab practice (25) + Quiz/ Assignment (15%) + mid exam
120
Reading list  Creswell, J.W. 2017. Research Design Qualitative, Quantitative, and
Mixed Methods Approaches. SAGE Publications. Thousand Oaks.
 Herzog, M.H., G. Francis, A. Clarke. 2019. Understanding Statistics
and Experimental Design. How to Not Lie with Statistics. Springer
International Publishing. Switzerland
 Young T.J. 2016. Questionnaires and Surveys. In Zhu Hua, Ed.
Research Methods in Intercultural Communication: A Practical
Guide. Wiley. Oxford.
121
Module Handbook
Basic Technique of Cell and Tissue Culture
Module Name: Basic Technique of Cell and Tissue Culture

-
Person responsible for the Dr. Dra. Wahyu Widoretno, M.Si
module:
Lecturer(s): 1. Dr. Dra. Wahyu Widoretno, M.Si
2. Prof. Muhaimin Rifa`I, S.Si., Ph.D.Med.Sc
3. Dr. Dra. Sri Rahayu, M.Kes.
5. Yoga Dwi Jatmiko, S.Si., M.App.Sc.,Ph.D

Bachelor Programme
Compulsory Odd
in Biology
Contact hours per

week
Lectures 1.7 40
assignment &
4.0 40
self-study)

ECTS
4.5 4.0 136 h 4.5
Credit point 3 credit units (sks)
55%.
122
learning outcomes

and safety.

applications.
CLO 1. Able to understand and explain the basic concepts and principles
of cell and tissue culture techniques (ILO 3)
CLO 2. Understand and apply basic technical protocols/procedures for

plant, animal, and microbial cell culture (ILO 3, ILO4).
CLO3 Able to understand and explain the role and application of plant,
animal, and microbial cell culture techniques in basic research and in
agricultural, medical and industrial biotechnology (ILO5).
CLO4. Have a good personality in supporting to work in a team, especially

through structured assignments in lectures and lab practice (ILO7).
Content 1. Introduction: lecture contract, understanding, importance and scope of
basic techniques of cell and tissue culture
2. Fundamentals of plant tissue culture, types of culture and factors that
control the growth and development of plant cell and tissue cultures.
3. Principles and techniques of plant cell and tissue culture
4. The important role and application of plant cell and tissue culture in
basic research (cytology, biochemistry and physiology studies)
5. Important roles and applications of plant cell and tissue culture in
agricultural, medical and industrial biotechnology
6. Fundamentals of animal cell culture, types of culture and factors that
control the growth and development of animal cell cultures.
7. Fundamentals of animal cell culture, types of culture and factors that
control the growth and development of animal cell cultures.
8. Cell isolation technique from tissue for animal cell culture
9. Application of animal cell culture in basic research
10. Application of animal cell culture in medical biotechnology
11. Microbial culture media and techniques, measurement and kinetics of
microbial growth
12. Scale-up of microbial processes, isolation of microbial products,
isolation and strain development
13. Application of microbial culture technology and biosafety/bioethics
issues in microbial technology
123
 Student presentation
 Attitude during lab practice
Form of examination in lab practice:
 Lab report
 Pre/post-test
 Presentation
Class score (CS): Quiz (10%) + Assignment (15%), mid exam (30%), and
final exam (30%) + Student presentation (15%)
Practice score (PS): Report (30%) + pre/post-test (15%) + presentation
(15%) + final practice exam (40%)
Reading list  Freshney, R.I., 2015. Culture of animal cells: a manual of basic
technique and specialized applications. John Wiley & Sons.
 Jacquelyn G. Black and Laura J. Black, 2017, Microbiology:
Principles and Explorations, 10th Edition, Wiley Publisher.
 James G. Cappuccino and Natalie Sherman, 2014, A Laboratory
Manual, 10th edition, Pearson Education.
 Neumann KH, A Kumar, J Imani. 2009. Plant Cell and Tissue Culture
- A Tool in Biotechnology. Basics and Application. Springer-Verlag
Berlin Heidelberg.
 Madigan et al., 2019, Brock Biology of Microorganisms 15th edition,
Pearson Education.
 Meyer HP and DR. Schmidhalter. 2014. Industrial Scale Suspension
Culture of Living Cells. Willey Blackwell Germany.
 Park. 2021, Plant Tissue Culture: Techniques and Experiments.
Netherlands: Elsevier Science.
 Purohit SD. 2013. Introduction to Plant Cell, Tissue and Organ
Culture. PHI Learning Private Limited Dehli-110092.
124
Module Handbook
Evolution
Module Name: Evolution

-
Person responsible for the Prof. Sutiman Bambang Sumitro, S.U., D.Sc.
module:
Lecturer(s): 1. Prof. Drs. Sutiman B. Sumitro, SU., D.Sc.
Bachelor Programme
Compulsory Even
in Biology
Contact hours per

week
Lectures 1.7 40
assignment &
4.0 40
independent

ECTS
1.7 4.0 90.7 h 3
55%.
Recommended prerequisites The total credit units achieved is more than 78 credit units.
125
learning outcomes



CLO 1. Understand the purpose of the lecture, recognize the concept of

evolution, its benefits for understanding living systems
CLO 2. Understand the basic concepts of evolution: generality and life

history
CLO 3. Understand the basic concept of the evolution of organisms:

Biodiversity
CLO 4. Understand in detail the process of animal evolution through

examples in certain species
CLO 5. Understand in detail the process of plant evolution through

examples of certain species
CLO 6. Understand and summarize the basics of the theory of evolution
CLO 7. Gaining experience in discussing and developing the concept of

evolution
Content 1. The laws that apply in the evolution and history of life
2. Diversity of life and its relationship to evolution
3. Description and reasoning of changes in animal species
through fossil evidence and animal structures that exist today
4. Description and reasoning of changes in plant species through
fossil evidence and animal structures that exist today
5. Evaluate the possibility of misunderstanding and provide a
learning forum together
6. Studying various works of people's minds and their evidence
 Small Group Presentation
126
(15%) + Presentation (15%) + mid exam (30%) + final exam (30%).

Reading list  Carmines, E.G. and Stimson, J.A., 2021. Issue evolution. Princeton
University Press.
 C. A. . Backer & R. C. Bakhuizen Van Den Brink. 1965. Flora of
 Dahler F. and Chandra J. (edisi bahasa Indonesia): Asal dan Tujuan
manusia (ISBN 9794130591)
 Levins, R., 2020. Evolution in changing environments. Princeton
University Press.
 Wikipedia: id.wikipedia.org/wiki/Asal_Usul_Spesies
id.wikipedia.org/wiki/Charles_Darwin
 Waluyo, L., 2010. Miskonsepsi dan Kontroversi Evolusi (ISBN: 978-
979-796-115-2)
127
Module Handbook
Internship
Module Name: Internship

-
Person responsible for the Viky Vidayanti, S.Si., M.Si
module:
Lecturer(s): 1. Viky Vidayanti, S.Si., M.Si
Bachelor Programme
Compulsory Odd
in Biology
Contact hours per

week
Lectures - -
assignment &
- -
independent

ECTS
8.5 - 136 h 4.5
learning outcomes
128



CLO 1. Able to understand the field work practices and attitudes that must
be possessed as an intern.
CLO 2. Able to communicate in Indonesian.
CLO 3. Able to demonstrate scientific attitude and social attitude.

Content Students do work internships at an institution for 136
hours/semester. These activities include: Briefing at the beginning of
the semester, doing internships, making posters and disseminating
them, and/or written reports. Monitoring and evaluation are carried
out by two supervisors, an examiner and a street vendor coordinator.
requirements and forms of  Poster presentation (understanding level, systematics,
examination attractiveness and clarity)
Final score: understanding level (30%) + Poster systematics (10%) +

Poster attractiveness (5%) + Poster clarity (10%).
Reading list Varies depend on the internship topics.
129
Module Handbook
Bachelor’s Thesis Proposal Seminar
Module Name: Bachelor’s Thesis Proposal Seminar

-
module:
2. Thesis supervisors
Bachelor Programme
Compulsory Odd
in Biology
Contact hours per

week
Lectures - -
assignment &
- -
independent
Depend on the
number of students
Seminar 2.8
who enrolled this
course

ECTS
2.8 - 45.3 h 1.5
Recommended prerequisites The total credit units achieved is more than 108 credit units, and has
a prospective supervisor.
130
learning outcomes




CLO 1. Able to analyze and synthesize research data.
CLO 2. Able to describe research results in written form.
CLO 3. Able to present research results in seminar forums.

Content 1. Students analyze research results
2. Students synthesize research results
3. Students carry out resumes and report their research results to
the working group; students write research reports according to
the manual.
4. Students make presentation media, understand presentation
techniques and present their research results openly
requirements and forms of  Quality of thesis proposal writing
examination  Slide presentation
 Presentation (systematics, clarity, language, attitude and timing
management)
 Understanding level
Final score: understanding level (30%) + Quality of thesis proposal

writing (30%) + Slide presentation (10%) + Presentation (systematics
& clarity (10%) + Presentation (language) (10%) + Presentation
(attitude and timing management) (10%).
Reading list  Jurusan Biologi, 2016. Pedoman Penulisan Skripsi. Jurusan Biologi,
FMIPA, Universitas Brawijaya, Malang;
131
 Fakultas MIPA, ---. Pedoman Penulisan Tugas Akhir. FMIPA.
Universitas Brawijaya.
 Varies depend on the thesis topics.
132
Module Handbook
Research Result Seminar
Module Name: Research Result Seminar

-
module:
Bachelor Programme
Compulsory Even
in Biology
Contact hours per

week
Lectures - -
assignment &
- -
independent
Depend on the
number of students
Seminar 2.8
who enrolled this
course

ECTS
2.8 - 45.3 h 1.5
Recommended prerequisites The total credit units achieved is more than 120 credit units
learning outcomes
133




CLO 1. Understand the order of implementation of the seminar course

thesis proposal final thesis
CLO 2. Understand the rules of scientific writing and implementing them

correctly
CLO 3. Understand the technique of preparing the final project proposal

manuscript and seminar correctly
CLO 4. Understand the technique of preparing the final project proposal

manuscript and seminar correctly
Content 1. Contract / study rules
2. Procedures for writing and presenting the final thesis
proposal
3. Thesis (final project) seminar
requirements and forms of  Understanding and developing ideas
examination  Quality of thesis writing
 Slide presentation
 Presentation (systematics, clarity, language, attitude and timing
management)
 Delivering research results (presentation, interpretation,
analysis)
Final score: understanding and developing ideas (30%) + Quality of

thesis proposal writing (10%) + Presentation (systematics & clarity
(15%) + Presentation (language) (10%) + Presentation (attitude and
timing management) (5%) + Delivering research results
(presentation, interpretation, analysis) (20%)
134
 Fakultas MIPA, ---. Pedoman Penulisan Tugas Akhir. FMIPA.
Universitas Brawijaya.
 Varies depend on the thesis topics.
135
Module Handbook
Bachelor’s Thesis
Module Name: Bachelor’s Thesis

-
module:
Bachelor Programme
Compulsory Even
in Biology
Contact hours per

week
Lectures - -
assignment &
- -
independent
Depend on the
Laboratory practice / number of students
17
fieldwork who enrolled this
course

ECTS
17 - 272 h 9
Recommended prerequisites The total credit units achieved is more than 120 credit units
136
learning outcomes





CLO 1. Understand Biology and its supporting sciences and their benefits,
as well as attitudes and behavior (life skills) as a biologist

development and analysis.
CLO 4. Understand the concept of research and scientific writing

the field of biology
CLO 6. Able to communicate in Indonesian and English.
CLO 7. Skilled in basic computer operations software applications, basic

instruments, standard methods for analysis and synthesis in the field of
biology.

CLO 9. Have a Bio-entrepreneurship character (leadership, managerial,

inner motivated, responsive, working in a team, etc.)
Content 1. Knowledge deepening (theoretical basis) supporting the topic
137
2. Research variables and objects to be studied
3. Application of basic science in solving biological problems,
especially those related to the field of research.
4. Research concepts and techniques for obtaining data related
to the thesis theme taken by students.
5. Skills related to the implementation of research and its
implementation to obtain data
6. Elaboration of research results in one form of scientific work in
writing
7. Presentation of research results in seminar forums in
accordance with standards in the Department of Biology.
8. Basic computer application programs, basic instruments,
standard methods for analysis and synthesis in the field of
biology, according to the topic/field of student research
9. Research methods to solve biological problems in certain
areas of interest (student choice).
10. Good knowledge and attitudes/habits regarding scientific and
social attitudes
11. Research group/organization cooperation methods in
laboratories, Working Group or other related research groups.
Study and examination Form of thesis examination:
requirements and forms of  Understanding and developing ideas
examination  Quality of thesis writing
 Delivering research results (presentation, interpretation,
analysis)
Thesis exam score: Understanding and developing ideas (50%) +

Quality of thesis writing (10%) + Delivering research results
(presentation, interpretation, analysis) (20%)
Final score: Thesis Proposal Seminar (10%), Research Result Seminar
(20%) dan Thesis Exam (70%).
 Karjo, CH, 2020 Writing and Researching for A Thesis Proposal.
(n.p.): Penerbit Universitas Katolik Indonesia Atma Jaya.
 Mligo, ES, 2016 Introduction to Research Methods and Report
Writing: A Practical Guide for Students and Researchers in Social
Sciences and the Humanities. United Kingdom: Wipf and Stock
Publishers.
138
ELECTIVE COURSES
139
FIELD OF INTEREST
IN BOTANY
140
Module Handbook
Ethnobotany
Module Name: Ethnobotany

-
Semester/term: Odd semester
Person responsible for the Dr. Jati Batoro, M.Si
module:
Lecturer(s): 1. Dr. Jati Batoro, M.Si
Bachelor Programme
Elective Odd
in Biology
Contact hours per

week
Lectures 1.7 40-50

assignment &
4.0 40-50
self-study)

ECTS
1.7 4.0 90.7 h 3

55%.
 Diversity of Flora (MAB60005)
 Practice in Diversity of Flora (MAB60006)
141
learning outcomes



applications.
CLO 1. Able to understand the principles of ethnobiological knowledge in

society.
CLO 2. Able to identify scientific knowledge (ethics), public knowledge

(emic), community praxis about the scope of ethnobotany, ethnozoology,
ethnoecology.
CLO 3. Able to perform interview techniques or qualitative and quantitative

approach methods.
CLO 4. Able to perform data analysis, synthesizing data from the

community/ethnicity and the impacts.
CLO 5. Able to conduct research in the field of ethnobiology studies.

Content 1. Fundamentals of Ethnobiology
2. Anthropology of ethnic groups/community groups
3. Ethnobotany and scientific knowledge
4. Ethnozoology and scientific knowledge
5. Ethnoecology and scientific knowledge
6. Biological resources
7. Data collection techniques (interviews), ethics and emic
8. Practicum/fieldwork
examination  Assignment/ paper project
Final score: Paper project (10%), quiz (10%), assignment (10%), mid exam
(35%), and final exam (35%)
142
Reading list  Albuquerque, U.P., Ramos, M.A., Júnior, W.S.F. and De Medeiros,
P.M., 2017. Ethnobotany for beginners. Springer International
Publishing.
 Balick, M.J. and Cox, P.A., 2020. Plants, people, and culture: the
science of ethnobotany. Garland Science.
 Backer, C.A., & R.C. Bakhuizen Van Den Brink JR. 1963. Flora of
Java. Vol. I, II, III (Spermatophytes Only) N. V. P. Noordhoff.
Groningen- The Netherlands.
 Batoro, J. 2015. Pengelolaan lingkungan dengan pendekatan
Etnobiologi-Etnobotani. UB Press.
 Cotton, C.M. 1996. Ethnobotany: Principle and Applications. John
Wiley & Sons. Chichester, New York, Brisbane, Toronto, and
Singapore. 424 hlm.
 Dharmawan, A. H. 2008. Bahan Kuliah Gerakan Sosial dan Dinamika
Masyarakat Pedesaan. Mayor Sosiologi Pedesaan-Departemen
Komunikasi dan Pengembangan Masyarakat. Institut Pertanian
Bogor.
 Johnson, T., 2019. CRC ethnobotany desk reference. CRC Press.
 Martin, G.J. 1988. Ethnobotani. Sebuah Manual Pemeliharaan
Manusia dan Tumbuhan. Natural History Publications, Borneo. 309
hlm.
 Purwanto, Y. 2011. Valuasi Hasil Hutan Bukan Kayu (Kawasan
Lindung PT Wirakarya Sakti Jambi). Jakarta LIPI Press. Hlm 121-143.
 Primack, R.B, J.M. Supriatna, P. Indrawan, Kramadibrata. 1998.
Biologi Konservasi.Yayasan Obor Indonesia. Jakarta.
 Rugayah, E.A. Widjaya, Praptini, editor, 2004. Pedoman
Pengumpulan Data Keanekaragaman Flora. Pusat Penelitian Biologi-
LIPI. Bogor.
 Sheil, D., R.K. Puri, I.Basuki, M. van Heiizt, M. Wan, N. Liswanti,
Rukmiyati, M.A. Sardjono, L. samsoedin, K. Sudiyasa, Chrisandini,
E.Permana, E. M. Angi, F. Gatzweiler, B. Johnson & Wijaya. 2004.
Mengeksplorasi keanekaragaman Hayati, Lingkungan dan
Pandangan Masyarakat Lokal Mengenai Lanskap Hutan. Bogor:
Center for International Forestry Research (CIFOR). Indonesia.
 Soemarwoto, O. 2004. Ekologi, Lingkungan Hidup dan
Pembangunan. Jakarta: Djambatan.
143
Module Handbook
Plant Tissue Culture
Module Name: Plant Tissue Culture

-
Person responsible for the Dr. Wahyu Widoretno, M.Si
module:
Lecturer(s): 1. Dr. Wahyu Widoretno, M.Si
3. Dr. Aminatun Munawarti, M.Si
Bachelor Programme
Elective Odd
in Biology
Contact hours per

week
Lectures 1.7 40-50

assignment &
4.0 40-50
self-study)
Laboratory practice 2.8 40-50

ECTS
4.5 4.0 136 h 4.5

55%.
Recommended prerequisites Passed on Plant Physiology (MAB62019)
learning outcomes
144


and safety.

applications.
CLO 1. Able to understand and be able to utilize callus culture and cell
suspensions, in vitro hybridization, protoplast fusion, and meristem cell
cultures in various plant biology studies (ILO 5).
CLO 2. Skilled in using appropriate methods in practical activities in

understanding the induction, growth and development of callus and cell
suspensions, in vitro hybridization, protoplast fusion, and meristem cell
cultures (ILO 3, ILO 4).
CLO 3. Able to understand and explain the concepts of research and

scientific articles to develop further ideas related to development of callus
and cell suspensions, in vitro hybridization, protoplast fusion, and meristem
cell cultures (ILO 1).
CLO 4. Able to understand the importance of academic integrity especially

through the discussion process and working on structured assignments in
theory class (ILO 1).
CLO 5. Have a good personal approach as a teamwork, especially through

working on structured assignments in theory (lecture) and practice
(practicum) classes (ILO 7).
Content 1. Plants as a source of various secondary metabolites
2. Process and factors affecting the induction, growth and maintenance
of callus and cell suspensions
3. Utilization of callus culture and cell suspension to increase the
biosynthesis of secondary products
4. Somatic vs zygotic hybridization
5. Isolation, fusion and culture of protoplasts
6. Several methods of hybrid cell selection and subsequent hybrid growth
and development
7. Shoot meristem and its parts
8. Metabolism of meristem cells, meristem culture techniques and factors
that influence the success of meristem culture in producing virus-free
plants
145
 Presentation
 Lab report
 Pre/post-test
Class score (CS): Presentation (15%) + quiz (10%) + assignment (15%),

mid exam (30%) + final exam (30%)
Reading list  Bhojwani, S.S. dan P.K. Dantu. 2013. Plant Tissue Culture: An
Introductory Text. Springer.
 Gray, DJ, Trigiano, RN 2016, Plant Tissue Culture, Development,
and Biotechnology, United States, CRC Press.
 Iftikhar R 2018, Recent Advances in Plant in Vitro Culture. Canada:
Arcler Education Incorporated.
 Smith, R.H. 2012. Plant Tissue Culture: Techniques and
Experiments. Acad. Press. Elsevier. London.
146
Module Handbook
Phytohormone
Module Name: Phytohormone

-
Person responsible for the Dr. Wahyu Widoretno, M.Si
module:
Lecturer(s): 1. Dr. Wahyu Widoretno, M.Si
3. Nunung Harijati, M.S., Ph.D
4. Dr. Aminatun Munawarti, M.Si
Bachelor Programme
Elective Odd
in Biology
Contact hours per

week
Lectures 1.7 40-50

assignment &
4.0 40-50
self-study)

ECTS
4.5 4.0 136 h 4.5
55%.
Recommended prerequisites Passed on Plant Physiology (MAB62019)
learning outcomes
147


and safety.

applications.
CLO 1. Understand and be able to utilize phytohormone and its

metabolism regulation in various plant biology studies (ILO 5).

understanding phytohormone, and its cellular and molecular mechanisms
(ILO 3, ILO 4).
CLO 3. Understand and be able to explain the concepts of research and

scientific articles to develop further ideas related phytohormone (ILO 1).
CLO 4. Understand the importance of academic integrity especially through

the discussion process and working on structured assignments in theory
class (ILO 1).
CLO 5. have a good personal approach as a teamwork, especially through

Content 1. Definition and types of plant hormones (auxins, gibberellins,
cytokinins, ethylene, abscisic acid, salicylic acid, jasmonic acid,
brasinosteroids, polyamines and cystin);
2. Structure, biosynthesis and metabolism of plant hormones;
3. Detection of the presence of endogenous hormones; transport and
regulation of hormones in plants;
4. The role of hormones in plant growth and development;
5. Cellular and molecular mechanisms of hormone action in plants,
6. Hormone applications in biology and agriculture.
 Presentation
 Lab report
 Pre/post-test
148

Reading list  Khan, NA, Iqbal N, Nazar R, 2017 Salicylic Acid: A Multifaceted
Hormone. Singapore: Springer Singapore.
 Mattoo, AK, 2018 The Plant Hormone Ethylene. United Kingdom:
CRC Press.
 Pandey, GK, 2017 Mechanism of Plant Hormone Signaling Under
Stress, 2 Volume Set. Germany: Wiley.
 Smith, SM, Li, J, Li, C,2017 Hormone Metabolism and Signaling in
Plants. United Kingdom: Elsevier Science.
149
Module Handbook
Medicinal Herb
Module Name: Medicinal Herb

-
module:
Lecturer(s): 1. Rodiyati Azrianingsih, S.Si., M.Sc., Ph.D
3. Prof. Widodo, S.Si., M.Si., Ph.D.Med.Sc.
4. Dr. Aminatun Munawarti, M.Si.
Bachelor Programme
Elective Odd
in Biology
Contact hours per

week
Lectures 1.7 40-50

assignment &
4.0 40-50
self-study)

ECTS
1.7 4.0 90.7 h 3
55%.
 Plant Physiology (MAB62019)
150
learning outcomes



applications.
CLO 1. Mastering the principles of biology in a comprehensive manner and

following the development of modern biology.
CLO 2. Perform simple analysis and synthesis in solving problems in the

field of biology.
CLO 3. Able to utilize biological sciences to solve simple problems through

the application of biological knowledge, biological analysis methods, as
well as the application of relevant technology in the scope of work.

organization.
Content 1. Research exploration for medicinal herb
2. Chemotaxonomy and classification of medicinal herbs.
3. Diversity of Indonesia Herbs
4. Lesson from local wisdom
5. Phytochemicals as Medicines
6. Isolation and Characterization of Active Compound
7. Pharmacokinetic and Pharmacodynamic
8. Mechanism of Drug Activity
9. The Synergy Principle at Work with Plants and Pathogens
10. Bioassay
11. From Traditional to Industrial standard
 Paper project
Final score: Attitude (10%), paper project (15%), presentation (15%), mid
exam (30%) and final exam (30%).
Reading list  Blumenthal, M. 1998. Therapeutic Guide to Herbal Medicines,
American Botanical Council, Integrative Medicine Communications,
Boston, Massachusetts.
151
 Chevallier, A., 2016. Encyclopedia of Herbal Medicine: 550 Herbs and
Remedies for Common Ailments. Penguin.
 Schulz, V. Haensel, R. Tyler, V.E. Rational Phytotherapy, A Physicians
Guide to Herbal Medicine, Springer Publishers, Berlin, ISBN: 3-540-
67096-3
 Kapoor, L.D., 2018. CRC handbook of Ayurvedic medicinal plants.
CRC press.
 McKenna, D.J. Jones, K. Hughes K, 2004. Botanical Medicines, The
Desk Reference for Major Herbal Supplements, The Haworth Herbal
Press, New York, ISBN: 0-7890-1265-0
 Natural Medicines Comprehensive Database
(www.naturaldatabase.com).
 Pengelly, A., 2021. The constituents of medicinal plants. Cabi.
 Van Wyk, B.E. and Wink, M., 2018. Medicinal plants of the world.
CABI.
152
Module Handbook
Plant Identification Technique
Module Name: Plant Identification Technique

-
module:
Lecturer(s): 1. Rodiyati Azrianingsih, S.Si., M.Sc., Ph.D

Bachelor Programme
Elective Odd
in Biology
Contact hours per

week
Lectures 1.7 40-50

assignment &
4.0 40-50
self-study)

ECTS
7.4 4.0 181.3 h 6
55%.
 Practice in Diversity of Flora (MAB62006)
learning outcomes
153


and safety.

applications.
CLO 1. Able to understand the systematic principles of plants

(identification, classification, nomenclature and kinship), theoretical
concepts, applications and the development of the systematic world.
CLO 2. Able to do simple analysis, synthesis of taxa positions,

characterization of plants
CLO 3. Able to make collections, herbariums, descriptions, draw plants,

make determination keys and use kinship programs.
CLO 4. Able to conduct research on plant systematics, national,

international presentations and presentations in journals.
Content 1. Lecture strategy and systematic botany
2. Systematic Botany and Biodiversity
3. Botanical nomenclature
4. Collection, herbarium and specimen drawing
5. Description of flower plants
6. Terminology of organs (characterization)
Identification key analysis kunci
7. Classification theory
8. Phenetic and phylogenetic classification and use of manuals and
programs
9. Administration of herbarium
10. Preparation of research in the field of taxonomy, revision, census.
Monograph
 Presentation
 Lab report
 Pre/post-test
154

Final score: {2 (CS) + 2(PS)}/4
Reading list  Besse, P., 2021. Molecular Plant Taxonomy. Springer US.
 Lawrence, G.H.M., 2017. Taxonomy of vascular plants. Scientific
Publishers.
 Simpson, M.G., 2019. Plant systematics. Academic press.
 Backer, C. A. and R. C. Bakhuizen Van Den Brink 1963. Flora of Java.
Vol. I, II, III (Spermatophytes Only) N. V. P. Noordhoff. Groningen-
The Netherlands.
 Batoro, J. 2001. The Kalimantan Genus Licuala (Arecaceae). Post
Graduate Program Bogor Institute of Agriculture. P. 1-77.
 Batoro, J. & Rahardi B. 2016. Dasar-dasar Sistematika Tumbuhan.
Laboratorium Taksonomi dan Perkembangan Tumbuhan Universitas
Brawijaya Malang.
 Batoro, et al,. 2006. Panduan Laboratorium dan Lapang. Pengenalan
Taksa: Bacteria, Protista dan Funggi. Laboratorium Taksonomi
Tumbuhan. Jurusan Biologi Fakultas MIPA Universitas Brawijaya.
 Bell, A.D. 1991. Plant Form. An illustrated Guide to Flowering Plant
Morphology.Oxford University Press.
 Claridge, M.F., H.A. Dawah and M.R. Wilson 1997. Species the units
of Biodiversity. The Systematics Association Special Volume Series
54. London UK.
 Davis, P.H. and V.H. Heywood. 1963. Principles of Angiosperm
Taxonomy. Oliver & Boyd Edinburg and London.
 Dunn, G. And B. S. Everitt 1982. An Introduction to mathematical
Taxonomy. Cambridge University Press.
 De Vogel, E.F. 1987. Manual of Herbarium Taxonomy (Theory and
Practice). UNESCO. Jakarta.
 Gesink, R.; Leeuwenberg, A.J.M.; Ridsdale, C.E.; Veldkamp, J.F.
1981. Thorner” analytical key to the families of flowering plants. Leiden
University Press.
 Girmansyah, D.; Y. Santika; Suratman (penyunting) 2006. Index
Herbariorum Indonesianum. Puslit Biologi LIPI Bogor.
 Greuter, W. 1994. International Code of Botanical Nomenclature
(Tokyo Code).
 Kitching, I.J., P.L. Forey, C.J. Humphries, D. M. Williams 1998.
Cladistics. Second Edition.The Theory and Practise of Parsimony
Analysis. Oxford University Press.
 Radford, A.E 1986. Fundamentals of Plant Systematics. Harper &
Row Publisher Inc. New York.
 Jeffrey, C. and V.H. Heywood. 1977. Biological Nomenclature.
Edward Arnold. London.
 Keng, K. 1989. Malayan Seed Plants. Singapore University Press.
Singapore.
 Stearn, W. 1983. Botanical Latin. History, Grammar, Syntax,
Terminology and Vocabulary.North Pomfret Vermont.
155
 Swofford, D.L. 1993. PAUP. Phylogenetic Analysis Using Parsimony
Version 3.1. Laboratorium Moleculer Sistematics Smithsonian
Institution. Center for Biodiversity Illionis Natural History Survey.
Arnold. London.
 Verheij, E. W. M. and R. E. Coronel. 1992. Prosea Plant Resources
of South-East Asia 2 Edible Fruits and Nuts. Indonesia and
Backhuys Publishers. Bogor.
 Wesphal, E and P.C.M. Jansen (Editors) 1989. Plant Resources of
south-East Asia A Selection. PudocWageningen.
156
Module Handbook
Radiation Biology
Module Name: Radiation Biology
-
Person responsible for the Dr.Sri Widyarti, M.Si
module:
Lecturer(s): 1. Dr. Sri Widyarti, M.Si
2. Chomsin Sulistya, PhD
Bachelor Programme
Elective Odd
in Biology
Contact hours per

week
Lectures 1.7 40-50

assignment &
4.0 40-50
self-study)

ECTS
1.7 4.0 90.7 h 3
55%.
 Basic Physics (MAP61190)
157
learning outcomes



applications.
CLO 1. Mastering the principles of biological response to the effects of

radiation, as well as analyzing the effects of radiation in biophysics,
biochemistry, molecular, cellular and organismal processes on
mutagenesis.
CLO 2. Able to compile and present articles in accordance with the

problem.
Content 1. Irradiation of cells: direct action in cell damage by radiation, indirect
action of cell damage by radiation, fate of irradiated cells
2. Type of radiation damage: Time scale, Classification of radiation
damage, Somatic and genetic effects, Stochastic and deterministic
(non-stochastic) effects, Acute vs. chronic effects, Total body
radiation response, Fetal irradiation
3. Cell survival and dose-response curves
4. Analysis of radiation damage in tissue
5. Cell susceptibility and resistance during cell cycle and cell death
6. Classification of radiation in radiobiology
7. The effect of oxygen on the influence of radiation
8. Radioprotectors and radiosensitizers
9. Dose rate and fractionation
10. Relative biological effectiveness
requirements and forms of  Group Assignment
examination  Individual Assignment
 Comprehension
Final score: Group Assignment (25%) + Individual Assignment (40%),

Comprehension (20%) + Class participation (15%)
Reading list  Carroll, Q.B., 2018. Radiography in the Digital Age: Physics-
exposure-radiation biology. Charles C Thomas Publisher.
 Gunderson, L.L. and Tepper, J.E., 2015. Clinical radiation oncology.
Elsevier Health Sciences.
158
 Joiner, M.C. and van der Kogel, A.J. eds., 2018. Basic clinical
radiobiology. CRC press.
 Nias, A.H.W. 1998. An Introduction to Radiobiology. John Wiley &
Sons, Inc., New York.
159
Module Handbook
Biodiversity Survey and Data Management
Module Name: Biodiversity Survey and Data Management
-
module:

Bachelor Programme
Elective Odd
in Biology
Contact hours per

week
Lectures 0.8 40-50

assignment &
2.0 40-50
self-study)

ECTS
9.3 2.0 181.3 h 6
55%.
Recommended prerequisites Passed on Biodiversity Conservation (MAB62020)
160
learning outcomes


and safety.

applications.
CLO 1. Improve physical preparation and experience in applying the

concepts of population, community, ecosystem, and biodiversity
conservation in tropical field studies. Furthermore, students are able
CLO 2. Designing activities, using instruments and methods of ecological

analysis and handling specimens in field surveys according to topics,
digitizing and cataloging data, image processing
CLO 3. increase responsibility and teamwork skills for all activities starting
from fundraising, preliminary studies, field surveys, specimen handling and
transportation and data analysis to biological resource data management
using information systems
CLO 4. Able to make decisions based on the data and information obtained
CLO 5. Able to formulate oral reports, acting as academic peer review in

disseminating survey results in the form of posters and scientific articles.
Content 1. Research design: Preliminary study, gathering information, research
topic & problem formulation. Developing research design on tropical
ecosystem studies (biodiversity & culture)
2. Communication of resource persons, recording techniques,
preparation of questionnaires, deepening and verification of
information from resource persons for the use of LH biodiversity
3. Descriptive observation, morphometrics, field identification for
specimens and management of plant/animal specimens, digitizing &
cataloging data, photography, image processing RA
4. Coordinate recording, sample distribution, data management and
input, analysis of vegetation, invertebrates and vertebrates.
5. Presenting & reviewing proposals of tropical ecosystem studies
6. Fieldwork to implement proposals of tropical ecosystem studies
7. Reporting research for seminar papers or journals
161
 Presentation
 Lab report
 Pre/post-test

Reading list  Yonghong, W. 2017. Periphyton : Functions and Application in
Environmental Remediation. Elsevier. Amsterdam
 Tomback, D. F. 2017. Biodiversity and Conservation in Forests.
MDPI. Basel.
162
Module Handbook
Plant Biotechnology
Module Name: Plant Biotechnology

-
Semester/term: Even semester
Dr. Dra. Wahyu Widoretno, MSi.
module:
Lecturer(s): 1. Dr. Wahyu Widoretno, MSi.
2. Prof. Dr. Ir. Estri Laras Arumingtyas, MSc.St.
3. Dr. Aminatun Munawarti, MSi.
4. Dra. Nunung Harijati, MS., PhD.
Bachelor Programme
Elective Even
in Biology
Contact hours per

week
Lectures 1.7 40-50

assignment &
4.0 40-50
self-study)

ECTS
4.5 4.0 136 h 4.5

55%.
Recommended prerequisites Passed on Genetics (MAB61017)
learning outcomes
163


and safety.

applications.
CLO 1. Mastering the principles, techniques and applications of

biotechnology in agriculture/plant development/biopharma
CLO 2. Able to perform simple analysis and synthesis in biotechnology

field problems
CLO 3. Able to utilize plant biotechnology to produce useful products to

improve people's welfare
CLO 3. Mastering instruments related to the field of plant biotechnology

studies
CLO 4. Have responsibility in completing lectures and plant biotechnology

practicums and skilled/capable in making the right decisions based on
analysis of information and practicum data as well as supporting
references (journals and so on)
CLO 5. Able to communicate and provide input in discussion group work

and practicum related to understanding plant biotechnology material
Content 1. Definition, scope and objectives of Plant Biotechnology
2. Development of Plant Biotechnology
3. Modern Biotechnology Techniques: Plant Tissue Culture
4. Modern Biotechnology Techniques: Recombinant DNA
5. Transformation technology: direct gene transfer
6. Transformation technology: indirect gene transfer
7. Molecular farming and industrial products
8. Application of biotechnology to increase crop productivity and
performance
9. Analysis of transgenic plants
10. Prospects, regulation and biosafety of transgenic crops
examination  Presentation (Comprehension, Slide presentation)
 Paper project
164
 Lab report
 Small group presentation (Comprehension, Slide presentation)
 Quiz (pre/post-test)
 Final test
Class score (CS): paper project (10%), presentation (15%), quiz (15%),
mid test (30%), and final test (30%)
Practice score (PS): quiz (20%), report (30%), presentation (20%), and
final test (30%)

Reading list  Abdin, M.Z., Kiran, U. and Ali, A. eds., 2017. Plant biotechnology:
principles and applications. Singapore: Springer.
 Slataer A., N.Scott, M. Fowler. 2003. Plant Biotechnology. The
genetic manipulation of plants. Oxford university Press;
 Chawla H.S. 2003. Plant Biotechnology. A Practical
Approach.Science Publishers, Inc. USA;
 Chawla H.S. 2002. Introduction to Plant Biotechnology. Science
publisher, Inc. USA;
 Ricroch, A., Chopra, S. and Kuntz, M. eds., 2021. Plant
biotechnology: experience and future prospects. Springer Nature.
 Stewart Jr, C.N. ed., 2016. Plant biotechnology and genetics:
principles, techniques, and applications. John Wiley & Sons.
 Srivastava, P.S., A. Narula, S. Srivastava. 2005. Plant Biotechnology
and Molecular Markers. Kluwer Academic Publishers, New York.
165
Module Handbook
Plant Reproductive Biology
Module Name: Plant Reproductive Biology

-
Dr. Serafinah Indriyani, M.Si.
module:
Lecturer(s): 1. Dr. Serafinah Indriyani, M.Si.
2. Dr. Wahyu Widoretno, MSi.
Bachelor Programme
Elective Even
in Biology
Contact hours per

week
Lectures 1.7 40-50

assignment &
4.0 40-50
self-study)

ECTS
4.5 4.0 136 h 4.5
55%.
learning outcomes
166

and safety.

applications.
CLO 1. Mastering theoretical concepts or their application in the scope of

CLO 2. Able to utilize biological sciences to solve simple problems through

the application of biological knowledge, biological analysis methods, as
well as the application of relevant technology in the scope of work.

organization.
CLO 4. Able to provide instructions/input in a work team.

Content 1. Sexual and asexual reproduction in plants
2. Reproduction in Thallophyta, Bryophyta, and Pteridophyta
3. Reproduction in Gymnosperms
4. Reproduction in Angiosperms: The process of developing reproductive
organs
5. Pollination and fertilization
6. Embryo development
7. Development of fruit and seeds
8. Ripening and dispersal of seeds/fruits
9. Genetic variation in plant reproductive biology
10. Natural vegetative reproduction in plants
11. Artificial vegetative reproduction in plants
12. Plant reproductive biology research applications
 Paper project
 Lab report
 Final test
167
Class score (CS): paper project (10%), presentation (15%), quiz (15%),
mid test (30%), and final test (30%)
Practice score (PS): quiz (20%), report (30%), presentation (20%), and
final test (30%)

Reading list  de Craene, LPR. 2010. Floral Diagrams: An Aid to Understanding
Flower Morphology and Evolution. Cambridge University Press.
 Batygina, TB. (Ed.). 2009. Embryology of Flowering Plants:
Terminology and Concepts. Vol. 3: Reproductive Systems. Science
Publishers. Enfield New Hampshire.
 Ramawat, KG, Merillon, JM & Shivanna, KR (Eds.). 2014.
Reproductive Biology of Plants. CRC Press Taylor & Francis Group.
168
Module Handbook
Ecotourism
Module Name: Ecotourism
-
Prof. Luchman Hakim, S.Si., M.Agr.Sc., Ph.D
module:
Lecturer(s): 1. Prof. Luchman Hakim, S.Si., M.Agr.Sc., Ph.D
Bachelor Programme
Elective Even
in Biology
Contact hours per

week
Lectures 1.7 40-50

assignment &
4.0 40-50
self-study)

ECTS
4.5 4.0 136 h 4.5
55%.
learning outcomes
169

and safety.

applications.

biological resource management problems in ecotourism development.

to ecotourism development.
CLO 3. Have responsibility in completing taSCU as part of the organization

and able to provide input in a work team that works in ecotourism
development.
Content 1. Basic understanding and principles of ecotourism
2. The basic principles of tourist destinations and the role of biological
principles in the management of tourist destinations
3. Basic principles of corridor ecology
4. Basic principles of community ecology
5. The basic principles of biology and ecology of biodiversity as a tourist
attraction
6. The basic principles of community empowerment
7. Ecotourism destination planning
8. Case studies of ecotourism activities
9. Evaluation of ecotourism field learning activities
 Assignment/ Paper project
 Lab report
 Final test
Class score (CS): Assignment/ paper project (10%) + presentation (15%) +

quiz (15%) + mid test (30%) + final test (30%)
Practice score (PS): quiz (20%) + report (30%)+ presentation (20%) + final
test (30%)
170
Reading list  Baud-Bovi, M and Lawson, F (2002) Tourism and Recreation:
Handbook of Planning and Design. Architectural Press, Oxford.
 Fennell, D.A., 2020. Ecotourism. Routledge.
 Fyall, A, Garrod B and Leask A (2005) Managing Visitor Attraction.
Elsevier, Oxford.
 Gunn, C A and Var, T (2002) Tourism Planning: Basic, Concepts and
Cases. Roudledge, New York.
 Hakim, L. 2004. Dasar-dasar Ekowisata (General Ecotourism). Bayu
Media Press.
 Hakim, L.S.K. Hong, J.E. Kim and N. Nakagoshi. 2007. Nature-based
Tourism in Small
171
Module Handbook
Horticulture Biology
Module Name: Horticulture Biology

-
Person responsible for the Prof. Dr. Ir. Estri Laras Arumingtyas, MSc.St.
module:
Lecturer(s): 1. Prof. Dr. Ir. Estri Laras Arumingtyas, MSc.St.
Bachelor Programme
Elective Even
in Biology
Contact hours per

week
Lectures 1.7 40-50

assignment &
4.0 40-50
self-study)

ECTS
4.5 4.0 136 h 4.5

55%.
Practice in Plant Structure and Development (MAB62010)
learning outcomes
172


and safety.

applications.
CLO 1. Able to explain the characteristics, propagation and cultivation

techniques, and horticultural plant management.
CLO 2. Have the skills to grow and reproduce horticultural plants in a

limited environment.
CLO 3. Able to design and perform data analysis to solve horticultural crop
problems.
CLO 4. Able to take responsibility and actively contribute to a work team.

Content 1. Characteristics of horticultural crops: Classification
2. Horticultural crop characteristics: plant structure
3. Growth manipulation using plant growth hormones
4. Manipulation of plant growth using chemicals (mutagens)
5. Physical/mechanical manipulation of plant growth: pruning
6. Propagation of horticultural crops
7. Environmental influence on plant growth
8. Plant growth in a greenhouse
9. Hydroponics
10. Verticulture
11. Pests and diseases that commonly attack horticultural crops
 Paper project
 Lab report
 Final test

173
Practice score (PS): quiz (20%) + report (30%) + presentation (20%) + final
test (30%)

Reading list  Orton, TJ, 2019 Horticultural Plant Breeding. United Kingdom:
Elsevier Science.
 Geilfus, C, 2019 Controlled Environment Horticulture: Improving
Quality of Vegetables and Medicinal Plants. Germany: Springer
International Publishing.
 Halstead, A 2018 Pests and Diseases. United States: DK/Penguin
Randon House.
 Shukla, AC, Mandal, D, Siddiqui, MW, 2018 Sustainable
Horticulture, Volume 1: Diversity, Production, and Crop
Improvement. United States: Apple Academic Press.
174
Module Handbook
Biomolecular Analysis Technique
Module Name: Biomolecular Analysis Technique
-
Prof. Fatchiyah, M.Kes., Ph.D
module:
Lecturer(s):
2. Prof. Dr. Ir. Estri Laras Arumingtyas, M.Sc.St.

Bachelor Programme
Elective Even
in Biology
Contact hours per

week
Lectures 1.7 40
assignment &
4.0 40
self-study)

ECTS
7.4 4.0 182.4 h 6

55%.
 Molecular Biology (MAB60022)
 Practice in Molecular Biology (MAB60023)
175
learning outcomes


and safety.

applications.

CLO 1. Able to explain the basic concepts of molecular analysis techniques
CLO 2. Able to isolate DNA and RNA from various plant, animal, bacterial
tissues, and measuring the levels of biomolecules qualitatively
and quantitatively
CLO 3. Able to perform and analyze DNA and RNA amplification and their
applications
CLO 4. Able to explain the manufacture of cDNA or RNA probes
CLO 5. Able to analyze polyformisms of various organisms based on
genome data
CLO 6. Able to explain the concepts of genetic manipulation and the basic
techniques of molecular cloning.
CLO 7. Able to understand hybridization techniques with gene expression
identification systems: Shoutern and Northern blot.
CLO 8. Able to explain the basics of DNA sequencing
CLO 9. Able to perform protein isolation and precipitation
CLO 9. Able to create standard curves and measure protein content.
CLO 10. Able to perform SDS PAGE electrophoresis and analyze the
results.
CLO 11. Able to perform immunoblotting analysis.
CLO 12. Able to explain the basic techniques of immunohistochemistry
Content 1. Basic techniques of genetic material analysis and qualitative &
quantitative measurement of biomolecules
2. Basic DNA RNA amplification techniques and their applications
3. Probe Manufacturing
4. Polymorphism analysis
5. Genetic manipulation
6. Basic Molecular cloning techniques
7. Hybridization: Gene detection system & mRNA level
8. DNA sequencing
9. Basic techniques of protein isolation and precipitation
10. Making standard protein curve and measuring Protein content kadar
11. Protein electrophoresis
12. Protein Analysis
13. Immunohistochemistry
176
examination  Paper project
 Enthusiasm
 Lab report
 Placement test
Class score (CS): paper project (10%), enthusiasm (10%), quiz (10%), mid
test (35%), and final test (35%)
Practice score (PS): Placement test (20%), report (40%), and final practice
exam (40%)
Final score: {(CS) + (PS)}/2

Reading list  Fatchiyah, Widyarti, S. Arumingtyas, E.L. Rahayu, S. 2008, Teknik
Dasar Analisis Biologi Molekuler, Universitas Brawijaya, Malang.
 Fatchiyah, Widyarti, S. Arumingtyas, E.L. Rahayu, S. 2011. Biologi
Molekuler: Prinsip Dasar Analisis. Penerbit Erlangga, Jakarta.
USA:: Springer.
 Katoch, R. 2011. Analytical Techniques in Biochemistry and Molecular
Biology. Springer-Verlag New York
 Ochs, M.F. 2014. Methods in Molecular Biology. 2nd Edition. Humana
Press. Springer. UK.
 Rapley, R. and Whitehouse, D. eds., 2015. Molecular biology and
biotechnology. Royal Society of Chemistry.
 Wild, D. 2013. The Immunoassay Handbook: Theory and Applications
of Ligand Binding, ELISA and Related Techniques, 4 edition.Elsevier
Science.
 Andrews AT. 1986. Electrophoresis: Theory, Techniques &
Biochemical and Clinical Apllication. 2nd Ed. Clarendon Press,
Oxford.
Wiley & Sons.
 GeneBank: NCBI GeneBank: www.ncbi.nlm.nih.gov/,5

 DDBJ: http://www.ddbj.nig.ac.jp/
 Embl: http://www.ebi.ac.uk/
 Sambrook J. &Russel DW. 2001. Molecular Cloning: A laboratory
Sons.
 Harlow E. & Lane D. 1988. Antibodies: A laboratory manual. Cold
Spring
177
 Harbor Konfermann R. &Dubel S. 2001. Antibody Engeneering.
Springer Lab. Manual. www.duebel.uni-hd.de
 www.cup.org/wilson.
178
Module Handbook
Molecular Fingerprint
Module Name: Molecular Fingerprint

-
Person responsible for the Prof. Fatchiyah, M.Kes., Ph.D
module:
Lecturer(s): 1. Prof. Fatchiyah, M.Kes., Ph.D
3. Dr. Suharjono, M.Si
Bachelor Programme
Elective Even
in Biology
Contact hours per

week
Lectures 1.7 40-50

assignment &
4.0 40-50
self-study)

ECTS
4.5 4.0 136 h 4.5
55%.
179
learning outcomes


and safety.

applications.

CLO 1. Able to explain the basics of DNA fingerprinting and DNA typing in
forensics
CLO 2. Able to perform sampling, purification, storage
CLO 3. Able to perform methods of isolation and analysis of molecular
samples and sequencing
CLO 4. Able to understand the difference between genome and
mitochondrial typing
CLO 5. Able to distinguish DNA Fingerprinting & Forensic DNA system
CLO 6. Able to analyze molecular data in silico
CLO 7. Able to explain the basic theory of DNA Barcoding
CLO 8. Able to compare DNA Barcoding analysis on biodiversity and
relationship of animals, plants and microbes.
CLO 9 Able to determine biomarkers for fingerprint analysis in plants
Content 1. Fundamentals of DNA fingerprinting and DNA typing in forensics
2. Sampling, purification, storage
3. Molecular sample preparation
4. Genetic basis of DNA typing
5. Comparation of Fingerprinting DNA & Forensic DNA system
6. Molecular data analysis in silico
7. Basic theory of DNA Barcoding
8. Analysis of DNA Barcoding on biodiversity and animal kinship
9. Basics of species kinship analysis
10. Analysis of DNA Barcoding on biodiversity and kinship in microbes
11. Basic DNA Barcoding analysis for species kinship
12. Type of biomarker for fingerprint analysis in plants
13. Analysis of DNA Barcoding on biodiversity and kinship in plants
 Paper project
 Lab report
180
 Final test

test (30%)

Reading list  Butler, J.M., 2014. Advanced topics in forensic DNA typing:
interpretation. Academic Press.
 Dolf, G., 2013. DNA fingerprinting: approaches and applications (Vol.
58). Birkhäuser.
 Goodwin, W. ed., 2016. Forensic DNA typing protocols. Humana
Press.
 Gunn, A., 2019. Essential forensic biology. John Wiley & Sons.
 Ida Lopez and David L. Erickson. 2012. DNA Barcodes: Methods and
Protocols (Methods in Molecular Biology). Human Press. ISBN-13:
978-1617795909. ISBN-10: 1617795909
 John M Butler. 2009. Fundamentals of Forensic DNA Typing 1st
Edition. Academic Press. ISBN-13: 978-0123749994. ISBN-10:
0123749999
 Richads Li. 2015. Forensic Biology. 2nd Edition. CRS. • ISBN-10:
1439889708 • ISBN-13: 978-1439889701
 Jörg Epplen and Thomas Lubjuhnn. 1999. DNA Profiling and DNA
Fingerprinting. Birkhäuser. ISBN-10: 3764360186. ISBN-13: 978-
3764360184
 Nikolaus J. Sucher and James R. Hennell. 2012. Plant DNA
Fingerprinting and Barcoding: Methods and Protocols (Methods in
Molecular Biology). Human Press. ISBN-13: 978-1617796081. ISBN-
10: 1617796085
 Gene Helfman and Bruce B. Collette. 2009. The Diversity of Fishes:
Biology, Evolution, and Ecology. Wiley-Blackwell; 2 edition. ISBN-10:
1405124946. ISBN-13: 978-1405124942
 Jacques Izard and Maria Rivera. 2014. Metagenomics for
Microbiology. !rst Ed. Academic Press. ISBN-13: 978-0124104723.
ISBN-10: 012410472X
 Sandra Tscherwizek. 2008. 16S Ribosomal RNA Gene Sequencing:
Establishment of a Method for the Identification of Microorganisms in
Biopharmaceutical Production Areas. VDM Verlag Dr Muller. ISBN-
13: 978-3639109030. ISBN-10: 3639109031.
181
FIELD OF INTEREST
IN ZOOLOGY
182
Module Handbook
Animal Cell and Tissue Culture
Module Name: Animal Cell and Tissue Culture

-
Person responsible for the Prof. Muhaimin Rifa’i, S.Si., Ph.D.Med.Sc.
module:
Lecturer(s): 1. Prof. Muhaimin Rifa’i, S.Si., Ph.D.Med.Sc.
3. Dr. Sri Rahayu, M.Kes
Bachelor Programme
Elective Odd
in Biology
Contact hours per

week
Lectures 1.7 40-50

assignment &
4.0 40-50
self-study)

ECTS
4.5 4.0 136 h 4.5

55%.
learning outcomes
183


and safety.

applications.
CLO 1. Able to explain and analyze cell growth in vitro, and utilize it in
various animal biology studies (ILO 5).

understanding the growth of animal cell and tissue culture and its
maintenance (ILO 3, ILO 4).
CLO 3. Understand and be able to explain the concepts of research and

scientific articles to develop further ideas related to development of animal
cell and tissue culture (ILO 1).
CLO 4. Understand the importance of academic integrity especially through

the discussion process and working on structured assignments in theory
class (ILO 1).
CLO 5. have a good personal approach as a teamwork, especially through

Content 1. History and development of animal cell tissue culture.
2. Cell culture biology.
3. laboratory equipment preparation and sterilization.
4. Primary culture.
5. Cell line culture treatment.
6. Cell separation methods.
 Presentation
 Lab report
 Pre/post-test
184
Reading list  Al_Rubeai M. 2015. Animal Cell Culture. 9th ed. Springer
International Publishing. Switzerland
 Freshney, I. 2015. Culture of Animal Cells (7th ed.). Wiley.
Retrieved from https://www.perlego.com/book/992388/culture-of-
animal-cells-pdf (Original work published 2015)
 Healy L and Ruban L. 2015. Atlas of Human Pluripotent Stem Cells
in Culture. Springer Science. New York
185
Module Handbook
Ornithology
Module Name: Ornithology

-
Person responsible for the Drs. Aris Suwondo, M.Si.
module:
Lecturer(s): 1. Drs. Aris Suwondo, M.Si.
3. Dr. Agung Pramana Warih M, M.Si.
Bachelor Programme
Elective Odd
in Biology
Contact hours per

week
Lectures 1.7 40-50

assignment &
4.0 40-50
self-study)

ECTS
4.5 4.0 136 h 4.5

55%.
Recommended prerequisites Passed on Diversity of Fauna (MAB62007)
learning outcomes
186


and safety.

applications.
CLO 1. Able to understand and be able to explain the structure and

function, reproduction, behavior and conservation of birds, and utilize it in
further bird studies (ILO 5).

understanding the growth of birds and its cultivation (ILO 3, ILO 4).
CLO 3. Able to understand and be able to explain the concepts of research

and scientific articles to develop further ideas related to development of
birds (ILO 1).
CLO 4. Able to understand the importance of academic integrity especially

through the discussion process and working on structured assignments in
theory class (ILO 1).
CLO 5. Have a good personal approach as a teamwork, especially through

Content 1. Morphology and Field Identification
2. Anatomical structure of birds
3. Gametogenesis, ovulation and fertilization in birds
4. Breeding system
5. Endocrine glands associated with the reproductive system of birds
6. Nest structure and egg incubation
7. Nestling development
8. Respiratory system
9. Metabolism and thermoregulation
10. Vocalization and communication
11. Feeding and foraging/hunting behavior, social behavior of birds
12. Migration and Navigation
13. Conservation
 Presentation
187
 Lab report
 Pre/post-test

Reading list  Gill, F.B. and Prum, R.O. 2019. Ornithology. 4th ed.. W.H Freeman.
Newyork.
 Lovevette, I.J. and Fizpatrick, J.W. 2016. Cornell Laboratory of
Ornithology. Handbook of Bird Biology. 3th ed. John Wiley & Sons,
Ltd.West Sussex.
 Murgui, E. And Hedblom, M. 2017. Ecology and Conservationof

Birds in Urban Environment. Springer International Publishing.
 Scanes, C.G. 2015. Sturkie’s Avian Physiology. 6th ed. Elsivier.

London.
 Scout, G. 2020. Essential Ornithology. 2nd ed. Oxford University

Press. Oxford.
 Tong, W. 2020. Understanding Bird Behavior. An Illustrated Guide

What Birds Do and Why. Princeton University Press. Princeton and
Oxford.
188
Module Handbook
Ichtiology
Module Name: Ichtiology
-
Person responsible for the Dr. Agung Pramana Warih M, M.Si.
module:
Lecturer(s): 1. Dr. Agung Pramana Warih M, M.Si.
3. Drs. Aris Soewondo, M.Si.
Bachelor Programme
Elective Even
in Biology
Contact hours per

week
Lectures 1.7 40-50

assignment &
4.0 40-50
self-study)

ECTS
1.7 4.0 90.7 h 3

55%.
 Diversity of Fauna (MAB62007)
 Animal Anatomy and Physiology (MAB61013)
learning outcomes
189



applications.
CLO 1. Able to understand the basic science supporting Biology and

success life skills
CLO 2. Able to understand the structure, function and organization of life.

CLO 4. Skilled in using appropriate methods to solve simple problems
CLO 5. Able to communicate in Indonesian and English in the field of

biology
Content 1. External anatomical structure
2. Internal anatomical structure
3. Locomotion and Feeding
4. Homeostasis
5. Metabolism and energetic
6. Sensory System
7. Fish Reproduction
8. Fish as Predators
9. Fish as Prey
10. Social Activities
11. Cyclic Activity
12. Fish Geography
13. Fish Conservation
Final score: Assignment (15%) + Quiz (15%), Mid exam (35%) + Final
exam (35%)
Reading list  Baldisserotto B., Urbinati, E.C., Cyrino J.E.P.2020. Biology and
Physiology of Freshwater Neotropical Fish. Elsevier. London.
190
 Burton, D and Burton, M. 2018. Essential Fish Biology Diversity,
Structure and Function. 1st ed. Oxford University Press. Oxford.
 Evans, D.H., Caliborne, J.B.and Currie, S.2014. The Physiology of
Fishes. 4th ed. CRC Press. Taylor & Francis Group,Boca Raton.
 Hastings, P.A, Walker, H.J. and Galland, G.A. 2014. Fishes; Guide
to Diversity. University of California Press
 Wooton, R.J and Smith, C. 2015. Reproductive Biology of Teleost
Fishes. John Wiley & Sons, Ltd., Chichester
191
Module Handbook
Herpetology
Module Name: Herpetology

-
Nia Kurniawan, S.Si., M.P., D.Sc.
module:
2. Drs. Aris Soewondo, M.Si
Bachelor Programme
Elective Even
in Biology
Contact hours per

week
Lectures 0.8 40-50

assignment &
2.0 40-50
self-study)

ECTS
6.5 2.0 136 h 4.5
55%.
Recommended prerequisites Passed on Diverity of Fauna (MAB62007)
learning outcomes
192

and safety.

applications.
CLO 1. Able to understand and explain structure, function, toxicology,

behavior, ecology, systematics, and economic benefits of amphibian and
reptiles.
CLO 2. Able to design and perform data analysis to solve herpetology

conservation problems.
CLO 3. Able to take responsibility and actively contribute to a work team.

Content 1. Definition of herpetology
2. Structure and function of the body of amphibians and reptiles
3. Anatomy, physiology of respiration, metabolism and energetics,
osmoregulation, thermoregulation.
4. Modes of reproduction,
5. Toxicology,
6. Social behavior,
7. Body defense and communication,
8. Ecology: biogeography, conservation, diversity and systematics, and
9. The economic role of amphibians and reptiles.
 Paper project
 Lab report
 Final test

test (30%)
193
Reading list  Aldridge, R.D. and Sever, D.M. eds., 2016. Reproductive biology and
phylogeny of snakes. CRC Press.
 Gale Group; Zug, G.R., Vitt, L.J., and Caldwell, J.P. 2001.
Herpetology: An Introductory Biology of Amphibians and Reptiles.2nd
edition. Academic Press. San Diego;
 Hutchins, M. Murphy, J.B. and Schlager, N. 2003. Grzimek’s Animal
Life Encyclopedia: Reptiles. 2nd edition. Volume 7 Farmington Hills,
MI:
 Harding, J.H. and Mifsud, D.A., 2017. Amphibians and reptiles of the
Great Lakes region. University of Michigan Press.
 Vitt, L.J. and Caldwell, J.P., 2013. Herpetology: an introductory
biology of amphibians and reptiles. Academic press.
194
Module Handbook
Animal Reproductive Biology
Module Name: Animal Reproductive Biology

-
Person responsible for the Dr. Sri Rahayu, M.Kes.
module:
Lecturer(s): 1. Dr. Sri Rahayu, M.Kes.
3. Dr. Agung Pramana Warih M, M.S.
Bachelor Programme
Elective Even
in Biology
Contact hours per

week
Lectures 1.7 40-50

assignment &
4.0 40-50
self-study)

ECTS
4.5 4.0 136 h 4.5

55%.
Recommended prerequisites Passed on Animal Embryology (MAB61024)
learning outcomes
195


and safety.

applications.

success life skills
CLO 2. Able to understand the structure, function and organization of life

related to animal reproduction.
CLO 3. Able to communicate in Indonesian and English

CLO 5. Skilled in using appropriate methods related to animal

reproduction to solve simple problems in the field of biology
Content 1. Basic understanding of reproductive biology
2. Female and Male Reproductive Physiology
3. Intersexuality and transsexuality
4. Hormonal regulation, ovulation, puberty
5. Estrus, puberty
6. Pregnancy, placentation, parturition
7. Male and female infertility
8. Reproductive Technology and its benefits to overcome reproductive
disorders
9. Reproduction of fish
10. Conservation reproduction technology
11. Reproductive technology and therapeutic cloning
12. Parthenogenesis technology
 Paper project
 Lab report
196
 Final test

test (30%)

Reading list  Hopper MR. 2015. Bovine Reproduction. John Wiley and Sons, Inc.
USA
 Jones RE and Lopez KH. 2014. Human Reproductive Biology. 4th ed.
Academic Press. Elsevier Inc. USA
 Nieman H and Wrenzycki C. 2018. Animal Biotechnology :
Reproductive Biotechnologies. Springer International Publishing.
Switzerland
 Sharma M and Kumar A. 2017. Basic of Human Andrology. Springer
NAture. Singapore
 Singh SK. 2016. Mammalian Endocrinology and Male Reproductive
Biology. CRC Press. Taylor and Francis Group, New York
 Wooton RJ and Smith C. 2015. Reproductive Biology of Teleost
Fishes. John Wiley and Sons Ltd. Oxford.
197
Module Handbook
Ecotoxicology
Module Name: Ecotoxicology

-
Person responsible for the Dr. Catur Retnaningdyah, M.Si.
module:
3. Dr. Suharjono, M.Si.
Bachelor Programme
Elective Even
in Biology
Contact hours per

week
Lectures 1.7 40-50

assignment &
4.0 40-50
self-study)

ECTS
4.5 4.0 136 h 4.5
55%.
learning outcomes
198

and safety.

applications.
CLO 1. Able to understand the theoretical concepts about aspects of

environmental toxicology and the effect of pollutants on individual
organisms, populations, communities and ecosystems.
CLO 2. Able and skilled in analyzing and synthesizing as well as capable of

making the right decisions to design and present alternative solutions
related to management of the problem of pollutants exposed in the
ecosystem and have the skills to conduct bioassay experiments in the
laboratory
CLO 3. Able to conduct observations on ecotoxicological-related

phenomena occurring in the ecosystem using standard laboratory
equipment/instruments.
Content 1. Scope, goals, strategies & evaluation of teaching.
2. Introduction: History and understanding of ecotoxicology; classical
toxicology and ecotoxicological aspects
3. Source, type and level of pollutant toxicity in the ecosystem
4. The fate and transport (behaviour) of pollutants (organic, heavy metals
and radioactive isotopes) in organisms and ecosystems
5. Effect of pollutants on organisms (acute, short-term and long-term
toxicity tests)
6. Toxic effects of pollutants on the microorganism community
7. Toxic effects of pollutants on plant communities
8. Toxic effects of pollutants on plant and animal communities in the
waters
9. Toxic effects of pollutants on terrestrial ecosystems
10. Toxic effects of pollutants on aquatic ecosystems
11. Toxic effects of pollutants on land animal communities
12. Bioconcentration, bioaccumulation and biomagnification
13. Biomarkers, bioindicators, and biomonitoring of pollutants in
ecosystems
14. Mechanisms of stress and toxic effects of pollutants on organisms at
the molecular level
 Paper project
199
 Lab report
 Final test

test (30%)

Reading list  Erik Jorgensen. Ecotoxicology. 2010. Academic Press.
 Hybska, H. & D Samesova, 2015. Ecotoxicology. Published by
Technical University in Zvolen
 James M. Lynch, Alan Wiseman and Robert May. 2011.
Environmental Biomonitoring: The Biotechnology Ecotoxicology
Interface (Biotechnology Research), Cambridge University Press.
 Newman, M.C. 2020. Fundamentals of Ecotoxicology, fifth Edition,
CRC Press.
200
Module Handbook
Histopathology
Module Name: Histopathology

-
Drs. Aris Soewondo, M.Si.
module:
Bachelor Programme
Elective Even
in Biology
Contact hours per

week
Lectures 1.7 40
assignment &
4.0 40
self-study)

ECTS
7.4 4.0 182.4 h 6

55%.
Recommended prerequisites Passed on Animal Histology (MAB62011)
learning outcomes
201

and safety.

applications.
CLO 1. Able to understand the theoretical concepts about the

histopathology condition of various organs and tissues.

related to histopathology.
CLO 3. Able to make a histology preparate using standard laboratory

equipment/instruments in a teamwork.
Content 1. Adaptation, Cell Injury and Cell Death

2. Inflammation
3. Neoplasia
4. Gastrointestinal Histopathology
5. Histopathology of the Respiratory Tract and Lungs
6. Histopathology of the Endocrine System
7. Histopathology of the Circulatory System
8. Histopathology of the liver
9. Histopathology of the Urinary System
10. Histopathology of the Genital System
11. Histopathology of the mammary glands
12. Skin
13. Histopathology of the Nervous System
14. Histopathology of sensory organs
examination  Assignment/ Paper project
 Lab report
 Pre/post-test
Class score (CS): Assignment/paper project (20%), quiz (10%), mid test
(35%), and final test (35%)
Practice score (PS): Pre/post-test (20%), report (40%), and final practice
exam (40%)
202

Reading list  Kumar,V., Abbas, A.K. and Aster, J.C. 2018 .Robbins
Basic Pathology, 10th ed.. Elsevier Inc. Philadelphia
 Kumar,V., Abbas, A.K., Fausto, N. and Aster, J.C. 2019 .Robbins
and Cotran Pathologic Basis of Disease, 18th ed.. Saunders Elsevier
Inc. Philadelphia
 Mohan, H. 2015, Textbook of Pathology. 7th ed. Jaypee Brothers
Medical Publishers (P) Ltd. Daryaganj
 O’Dowd, G., Bell, S., and Wright, S. 2020. Weather’s Pathology. A
Text, Atlas and Review of Histopathology. 6th ed. Elsevier. London.
 Rubin, E. and Reisner, H.M. 2014. Essentials of Rubin’s pathology .
6th ed. Lippincott Williams & Wilkins, Philadelphia
 Zachary, J.F. 2017. Pathologic Basis of Veterinary Diseases. 6 thed.
Elsevier Inc. Missouri.
203
Module Handbook
Ecotourism

-
module:
Bachelor Programme
Elective Even
in Biology
Contact hours per

week
Lectures 1.7 40-50

assignment &
4.0 40-50
self-study)

ECTS
4.5 4.0 136 h 4.5
55%.
learning outcomes
204

and safety.

applications.



development.
attraction
 Paper project

 Lab report
 Final test

test (30%)
205

Elsevier, Oxford.
Media Press.
Tourism in Small.
206
Module Handbook
-
module:
Lecturer(s):

Bachelor Programme
Elective Even
in Biology
Contact hours per

week
Lectures 1.7 40
assignment &
4.0 40
self-study)

ECTS
7.4 4.0 182.4 h 6

55%.
207
learning outcomes


and safety.

applications.

and quantitatively
applications
genome data
results.
8. DNA sequencing
208
 Enthusiasm
 Lab report
 Placement test
Class score (CS): paper project (10%), enthusiasm (10%), quiz (10%), mid
test (35%), and final test (35%)
Practice score (PS): Placement test (20%), report (40%), and final practice
exam (40%)

USA:: Springer.
Science.
Oxford.
Wiley & Sons.
Sons.
Spring
209
210
Module Handbook
-
module:
Bachelor Programme
Elective Even
in Biology
Contact hours per

week
Lectures 1.7 40-50

assignment &
4.0 40-50
self-study)

ECTS
4.5 4.0 136 h 4.5
55%.
211
learning outcomes


and safety.

applications.

forensics

 Paper project
 Lab report
212
 Final test

test (30%)

58). Birkhäuser.
Press.
978-1617795909. ISBN-10: 1617795909
0123749999
1439889708 • ISBN-13: 978-1439889701
3764360184
10: 1617796085
1405124946. ISBN-13: 978-1405124942
Microbiology. 1st Ed. Academic Press. ISBN-13: 978-0124104723.
ISBN-10: 012410472X
13: 978-3639109030. ISBN-10: 3639109031.
213
FIELD OF INTEREST
IN ECOLOGY
214
Module Handbook
Biological Control
Module Name: Biological Control

-
Zulfaidah Penata Gama, S.SI., M.Si., Ph.D.
module:
Lecturer(s): 1. Zulfaidah Penata Gama, S.Si., M.Si., Ph.D.
Bachelor Programme
Elective Odd
in Biology
Contact hours per

week
Lectures 1.7 40-50

assignment &
4.0 40-50
self-study)

ECTS
7.4 4.0 182.4 h 6

55%.
Module objective/ intended ILO 1. Able to demonstrate academic integrity and the ability to develop
learning outcomes themselves through lifelong learning.
215

and safety.

applications.
Course learning outcomes after completing this module:
CLO 1. Able to analyze problems of pests, diseases, natural enemies and

their ecosystems.
CLO 2. Able to design alternative solutions and implementations on a lab

and semi-field scale.
CLO 3. Able to present them responsibly according to theory and data.

Content 1. What is the Biological control?
2. Ecology as the basis for biological control
3. Conditions for Biological Control Measures
4. Introduction,
5. Augmentation
6. Conservation
7. Integrated Biological Control (IPM)
8. Research directions for Biological Control with various biological
agents (predators, pathogens, parasites, parasitoids)
9. Development of Biological Control research as a solution problems in
the field
 Progress report
 Lab report
 Pre/post-test
Class score (CS): Quiz (20%), slide & discussion (30%),

assignments (30%), and progress report (20%)
Practice score (PS): Report (30%), test (15%), presentation (15%), and
final practice exam (40%)
216
Reading list  Askary, T.H. and Martinelli, P.R.P. eds., 2015. Biocontrol agents of
phytonematodes. CABI.
 Barbosa, P.A. ed., 1998. Conservation biological control. Elsevier.
 Flint, M.L. and Dreistadt, S.H., 1998. Natural enemies handbook: the
illustrated guide to biological pest control (Vol. 3386). Univ of
California Press.
 Hajek, A.E. and Eilenberg, J., 2018. Natural enemies: an introduction
to biological control. Cambridge University Press.
 Heimpel, G.E. and Mills, N.J., 2017. Biological control. Cambridge
University Press.
 Stirling, G.R., 2018. Biological control of plant-parasitic
nematodes (pp. 103-150). CRC Press.
 Shantharam, S., J.F. Montgomery. 1999. Biotechnology, Biosafety and
Biodiversity. Science Publ. USA.
 Poinar, G.O., 2018. Nematodes for biological control of insects. CRC
press.
 Waage, J., 2012. Biological control: measures of success. Springer
Science & Business Media.
217
Module Handbook
Aquatic Ecosystem Management
Module Name: Aquatic Ecosystem Management

-
module:
3. Viky Vidayanti, S.Si., M.Si.
Bachelor Programme
Elective Odd
in Biology
Contact hours per

week
Lectures 1.7 40-50

assignment &
4.0 40-50
self-study)

ECTS
4.5 4.0 136 h 4.5

55%.
learning outcomes
218


and safety.

applications.
CLO 1. Mastering theoretical concepts related to aquatic ecology and their

applications.

related to management of problems that exist in aquatic ecosystems.
CLO 3. Have the skills to observe phenomena that occur in aquatic

ecosystems using standard laboratory equipment/instruments.
2. Introduction: Boundaries, scope of aquatic ecosystem management,
global water problems (e.g. water scarcity, pollution, the effects of
climate change on water resources)
3. Physical and chemical properties of freshwater and marine
ecosystems
4. Biological components in freshwater and marine ecosystems
5. Assessment and monitoring of water quality using biological indicators
6. Water quality monitoring application using bioindicators in both fresh
and marine waters
7. Impacts of land use and human activities on aquatic ecosystems and
how they are managed
8. Mangrove ecosystem and its management
9. Wetland ecosystems: the problems of physical chemical and
community structure of wetland organisms
10. Agricultural water regulations & best management for agricultural
effluents treatment (Special focus: Nitrogen, Phosphorus and pesticide
removal)
 Presentation
 Lab report
 Pre/post-test
219
Laboratory practice score (PS): Report (30%) + pre/post-test (15%) +

presentation (15%) + final practice exam (40%)
Final score: Mid test (20%) + final test (20%) + laboratory practice (25%),
presentation (20%) + discussion (15%)
Reading list  Castro, P., M.E. Huber. 2003. Marine Biology Laboratory and Field
Exercises. Oxford Univ. Press, New York.
 Closs, G., B. Downes & A. Boulton. 2004. Freshwater Ecology A
Scientific Introduction. Blackwell Publishing. MA, USA.
 Duxburi, D., A.C. Duxburi, K.A. Sverdrup. 2002. Fundamentals of
Oceanography. 4th Ed. McGraw-Hill, Boston.
 Haefner, P.A. 2001. Exploring Marine Biology Laboratory and Field
Exercises. Oxford Univ. Press, New York.
 Likens, G.E. 2010. River Ecosystem Ecology. 1st edition. Academic

Press
 Retnaningdyah, C. 2019. Cyanobacterial Harmful Algal Blooms
(CyanoHABs): Blooming Microcystis di Ekosistem Perairan Tawar
dan Cara Pengendaliannya, UB Press
 Reynolds, C.S. 2006 The Ecology of Phytoplankton, Cambridge
University Press Cambridge
 Wetzel, R.G. 2001. Limnology: Lake and River Ecosystem, 3rd
Edition, Academic Press
220
Module Handbook
Biodiversity Survey and Data Management
Module Name: Biodiversity Survey and Data Management
-
module:

Bachelor Programme
Elective Odd
in Biology
Contact hours per

week
Lectures 0.8 40-50

assignment &
2.0 40-50
self-study)

ECTS
9.3 2.0 181.3 h 6
55%.
learning outcomes
221


and safety.

applications.
CLO 1. Improve physical preparation and experience in applying the

concepts of population, community, ecosystem, and biodiversity
conservation in tropical field studies. Furthermore, students are able
CLO 2. Designing activities, using instruments and methods of ecological

analysis and handling specimens in field surveys according to topics,
digitizing and cataloguing data, image processing
CLO 3. increase responsibility and teamwork skills for all activities starting
from fundraising, preliminary studies, field surveys, specimen handling and
transportation and data analysis to biological resource data management
using information systems
CLO 4. Able to make decisions based on the data and information obtained
CLO 5. Able to formulate oral reports, acting as academic peer review in

disseminating survey results in the form of posters and scientific articles.
Content 1. Research design: Preliminary study, gathering information, research
topic & problem formulation. Developing research design on tropical
ecosystem studies (biodiversity & culture)
2. Communication of resource persons, recording techniques,
preparation of questionnaires, deepening and verification of
information from resource persons for the use of LH biodiversity
3. Descriptive observation, morphometrics, field identification for
specimens and management of plant/animal specimens, digitizing &
cataloging data, photography, image processing RA
4. Coordinate recording, sample distribution, data management and
input, analysis of vegetation, invertebrates and vertebrates.
5. Presenting & reviewing proposals of tropical ecosystem studies
6. Fieldwork to implement proposals of tropical ecosystem studies
7. Reporting research for seminar papers or journals
 Presentation
222
 Lab report
 Pre/post-test

Reading list  Borcard, D., Gillet, F. and Legendre, P., 2011. Numerical ecology with
R (Vol. 2, p. 688). New York: springer.
 Gaston, K.J. 2000. Global patterns in biodiversity. Nature 405: 220-
227.
 Kumar, H.D. 1999. Biodiversity and Sustainable Conservation.
Science Publ. Inc., New Hampshire;
 Krebs, C. 1989. Ecological Method. Harper and Prw Publ. New York;
 Purvis, A. & A. Hector. 2000. Getting the measure of biodiversity.
Nature 405: 212-219;
 Wildi, O., 2017. Data analysis in vegetation ecology. CABI.
 Whitmore, N. ed., 2015. A rapid biodiversity survey of Papua New
Guinea's Manus and Mussau Islands. Wildlife Conservation Society,
Papua New Guinea Program.
223
Module Handbook
Computational Ecology
Module Name: Computational Ecology

-
Dr. Catur Retnaningdyah, M.Si
module:
Lecturer(s): 1. Dr. Catur Retnaningdyah, M.Si
2. Dr. Endang Arisoesilaningsih, M.S
3. Dr. Brian Rahardi, M.Sc.
Bachelor Programme
Elective Even
in Biology
Contact hours per

week
Lectures 0.8 40-50

assignment &
2.0 40-50
self-study)

ECTS
6.5 2.0 136 h 4.5
55%.
learning outcomes
224

and safety.

applications.
CLO 1. Able to apply the principles of information technology-based

ecological data processing.
CLO 2. Able to understand several tools that are often used in ecological
computing either independently or in a collaboration.
CLO 3. Able to design tools according to their analysis needs to give the
alternative solutions of ecological issues.
Content 1. Ecological data management.
2. Ecological data structures and systems,
3. Ecological data analysis,
4. Ecological modeling and simulation.
5. Practice in discriminant analysis, cluster, PCA, factor analysis, growth
curve time series analysis, path analysis, and PLS.
6. Interpretation of computational data analysis results.
 Lab report
 Pre/post-test
 Final test

Practice score (PS): pre/post-test (20%) + report (30%) + presentation
(20%) + final test (30%)
225
Reading list  Jørgensen, S.E., Halling-Sørensen, B. and Nielsen, S.N.,
2017. Handbook of environmental and ecological modeling. CRC
Press.
 McGarigal, K., Cushman, S.A. and Stafford, S., 2013. Multivariate
statistics for wildlife and ecology research. Springer Science &
Business Media.
 Michener, W.K. and Brunt, J.W. eds., 2009. Ecological data: Design,
management and processing. John Wiley & Sons.
 Plant, R.E., 2018. Spatial data analysis in ecology and agriculture
using R. CRC Press.
 Wheater, C.P., Bell, J.R. and Cook, P.A., 2020. Practical field
ecology: a project guide. John Wiley & Sons.
 Zhang, W., 2010. Computational ecology: artificial neural networks
and their applications. World Scientific.
226
Module Handbook
Social Ecology
Module Name: Social Ecology
-
Person responsible for the Dr. Bagyo Yanuwiadi
module:
Lecturer(s): 1. Dr. Bagyo Yanuwiadi
Bachelor Programme
Elective Even
in Biology
Contact hours per

week
Lectures 1.7 40-50

assignment &
4.0 40-50
self-study)

ECTS
1.7 4.0 90.7 h 3
55%.
learning outcomes
227


applications.
CLO 1. Able to develop the implementation of biological innovations to be

introduced to the community effectively through various strategic
approaches to the community capable of presenting them responsibly
according to theory and data.

CLO 3. Skilled in using appropriate methods in social ecology approaches

to solve simple problems.
Content 1. Ecology and biology in general as social ecology
2. Various biological innovations and their applications
3. Research results of lecturers and other researchers
4. Various biological findings from journals
5. Various strategies for approaching the community and scientific
reasons for the pluses and minuses of the action and the appropriate
selection strategy for a particular community
6. Development of biological control research as a solution to problems
in the field
Final score: Assignment (15%) + Quiz (15%), Mid exam (35%) + Final
exam (35%)
Reading list  Haberl, H., Fischer-Kowalski, M., Krausmann, F. and Winiwarter, V.,
2016. Social Ecology. Springer International Publishing.
 Grichting, A. and Zebich-Knos, M. eds., 2017. The social ecology of
border landscapes. Anthem Press.
 Kramm, J., Pichler, M., Schaffartzik, A. and Zimmermann, M. eds.,
2018. Social Ecology State of the Art and Future Prospects. MDPI.
228
Module Handbook
Ecotourism
-
module:
Bachelor Programme
Elective Even
in Biology
Contact hours per

week
Lectures 1.7 40-50

assignment &
4.0 40-50
self-study)

ECTS
4.5 4.0 136 h 4.5
55%.
learning outcomes
229

and safety.

applications.



development.
attraction
 Paper project
 Lab report
 Final test

test (30%)
230
Elsevier, Oxford.
Media Press.
Tourism in Small.
231
Module Handbook
Ecotoxicology
Module Name: Ecotoxicology
-
module:
Bachelor Programme
Elective Even
in Biology
Contact hours per

week
Lectures 1.7 40-50

assignment &
4.0 40-50
self-study)

ECTS
4.5 4.0 136 h 4.5

55%.
learning outcomes
232

and safety.

applications.
CLO 1. Able to understand the theoretical concepts about aspects of

environmental toxicology and the effect of pollutants on individual
organisms, populations, communities and ecosystems.

related to management of the problem of pollutants exposed in the
ecosystem and have the skills to conduct bioassay experiments in the
laboratory
CLO 3. Able to conduct observations on ecotoxicological-related

phenomena occurring in the ecosystem using standard laboratory
equipment/instruments.
2. Introduction: History and understanding of ecotoxicology; classical
toxicology and ecotoxicological aspects
3. Source, type and level of pollutant toxicity in the ecosystem
4. The fate and transport (behaviour) of pollutants (organic, heavy metals
and radioactive isotopes) in organisms and ecosystems
5. Effect of pollutants on organisms (acute, short-term and long-term
toxicity tests)
6. Toxic effects of pollutants on the microorganism community
7. Toxic effects of pollutants on plant communities
8. Toxic effects of pollutants on plant and animal communities in the
waters
9. Toxic effects of pollutants on terrestrial ecosystems
10. Toxic effects of pollutants on aquatic ecosystems
11. Toxic effects of pollutants on land animal communities
12. Bioconcentration, bioaccumulation and biomagnification
13. Biomarkers, bioindicators, and biomonitoring of pollutants in
ecosystems
14. Mechanisms of stress and toxic effects of pollutants on organisms at
the molecular level
 Paper project
233
 Lab report
 Final test

test (30%)

Reading list  Erik Jorgensen. Ecotoxicology. 2010. Academic Press.
 Hybska, H. & D Samesova, 2015. Ecotoxicology. Published by
Technical University in Zvolen
 James M. Lynch, Alan Wiseman and Robert May. 2011.
Environmental Biomonitoring: The Biotechnology Ecotoxicology
Interface (Biotechnology Research), Cambridge University Press.
 Newman, M.C. 2020. Fundamentals of Ecotoxicology, fifth Edition,
CRC Press.
234
FIELD OF INTEREST IN
MICROBIOLOGY
235
Module Handbook
Food Microbiology
Module Name: Food Microbiology

-
Person responsible for the Tri Ardyati, M.Agr., Ph.D
module:
Lecturer(s): 1. Tri Ardyati, M.Agr., Ph.D
2. Yoga Dwi Jatmiko, S.Si., M.App.Sc., Ph.D.
Bachelor Programme
Elective Odd
in Biology
Contact hours per

week
Lectures 1.7 40-50

assignment &
4.0 40-50
independent

ECTS
4.5 4.0 136 h 4.5
55%.
Recommended prerequisites Passed on General Microbiology (MAB62018)
learning outcomes
236


CLO 1. Able to explain, characterize, and identify the types of

microorganisms that cause food spoilage, food-borne diseases and
important microorganisms that contribute to the food production process
(fermented food).
CLO 2. Able to explain the methods used for food preservation through
controlling intrinsic and extrinsic factors.
CLO 3. Able to explain and test the microbiological quality of several types
of food ingredients.
CLO 4. Able to solve the problems related to food production by applying

standard microbiological methods.
CLO 5. Able to work together to create, present, discuss, and maintain

structured assignments, make good and correct posters and slide
presentation.
Content 1. Introduction: Scope of Food Microbiology; Factors affected food
spoilage (intrinsic & extrinsic factors)
2. Food Spoilage
3. Food Preservation and Technologies
4. Fermented and Microbial Foods
5. Agents of Food Borne Diseases
6. Detection of Food Borne Diseases
7. Methods for microbiological examination of foods and Microbial food
indicator
8. Examination of Microbial Food Indicator/ quality control
9. Probiotics
10. HACCP/ Quality control
11. Journal reading and presentation
 Presentation
 Lab report
237
 Pre/post-test
Laboratory practice score (PS): Report (30%) + pre/post-test (15%)

+ presentation (15%) + final practice exam (40%)
Class score (CS): Mid test (30%) + final test (30%) + presentation
(20%) + Quiz (10%) + Assignment (10%)
Final score: (2CS+PS)/3
Reading list  Doyle, M.P., Diez-Gonzalez, F. and Hill, C. eds., 2020. Food
microbiology: fundamentals and frontiers. John Wiley & Sons.
 Matthews, K.R., Kniel, K.E. and Montville, T.J., 2017. Food
microbiology: an introduction. John Wiley & Sons.
 Roberts, D. and Greenwood, M., 2008. Practical food microbiology.
John Wiley & Sons.
 Erkmen, O. and Bozoglu, T.F., 2016. Food Microbiology, 2 Volume
Set: principles into practice. John Wiley & Sons.
 Yousef, A.E. and Carlstrom, C., 2003. Food microbiology: a
laboratory manual. John Wiley & Sons.
 Marth, E.H. and Steele, J. eds., 2001. Applied dairy microbiology.
CRC Press.
 Spencer, J.F. and de Spencer, A.L.R. eds., 2001. Food microbiology
protocols (Vol. 14). Springer Science & Business Media.
238
Module Handbook
Virology
Module Name: Virology

-
module:
Bachelor Programme
Elective Odd
in Biology
Contact hours per

week
Lectures 1.7 40-50

assignment &
4.0 40-50
independent

ECTS
1.7 4.0 90.7 h 3
55%.
learning outcomes
239



CLO 1. Able to explain the scope of virus particle limitations as a non-living
system with a living system
CLO 2. Able to explain the development of virus discovery and the
underlying analysis technology
CLO 3. Able to explain the role of modern analytical technology in studying
and detecting viruses
CLO 4. Able to explain the structure of virus particles
CLO 5. Able to explain the basic classification of viruses
CLO 6. Able to explain how the virus transmits / spreads the virus
CLO 7. Able to explain the origin and evolution of viruses
CLO 8. Able to explain the mechanism of the entry of viruses into cells
CLO 9. Able to explain the mechanism of transcription, translation &
transport by viruses
CLO 10. Be able to explain the mechanism of viral genome replication
CLO 11. Able to explain the assembly mechanism of virus particle
components and the release of virus from the host
CLO 12. Able to explain the relationship between viruses and the
mechanism of carcinogenicity
CLO 13. Able to explain current cases (case studies on Covid-19:
replication, pathogenesis, and strategies therapy)
CLO 14. Able to explain recent cases (case studies on Covid-19: ADE
antibody-dependent enhancement)
Content 1. Overview of lecture materials
2. Discovery of viruses
3. The Method of Studying Viruses and Virus Detection
4. Virus Particle Structure 5. Virus Classification
5. Transmission Virus
6. Origin & Evolution of Virus
7. Attachment & entry virus into cell
8. Transcription, translation & transport
9. Virus Genome Replication
10. Assembly & exit of virion from cells
11. Virus & Cancer
12. COVID-19: Coronavirus replication, pathogenesis, and therapeutic
strategies
13. COVID-19: ADE (Antibody dependent Enhancement)
240
 Comprehension
Final score: Group Assignment (25%) + Individual Assignment

(40%), Comprehension (20%) + Class participation (15%)
Reading list  Fenner, F.J., Bachmann, P.A. and Gibbs, E.P.J., 2014. Veterinary
virology. Academic Press.
 Flint, S.J., Racaniello, V.R., Rall, G.F., Hatziioannou, T. and Skalka,
A.M., 2020. Principles of virology, Volume 2: pathogenesis and
control. John Wiley & Sons.
 Richman, D.D., Whitley, R.J. and Hayden, F.G. eds., 2020. Clinical
virology. John Wiley & Sons.
 https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3427559/
https://www.sciencedirect.com/science/article/pii/S120197121200119
1
 https://agrilife.org/vetmed/files/2012/10/LS_5_4_sample_lesson.pdf
 https://juniperpublishers.com/artoaj/pdf/ARTOAJ.MS.ID.556181.pdf
https://core.ac.uk/download/pdf/288872.pdf
https://link.springer.com/chapter/10.1007/978-1-4020-8761-5_7
 https://www.ccjm.org/content/ccjom/early/2020/05/12/ccjm.87a.20047
.full.pdf
 https://www.nature.com/articles/s41586-020-2538-8
https://www.nature.com/articles/s41587-020-0577-1
https://jvi.asm.org/content/94/5/e02015-19.
241
Module Handbook
Medical Microbiology
Module Name: Medical Microbiology

-
Yoga Dwi Jatmiko, S.Si., M.App.Sc., Ph.D.
module:
Lecturer(s): 1. Yoga Dwi Jatmiko, S.Si., M.App.Sc., Ph.D.
2. Prof. Muhaimin Rifa’i, S.Si., Ph.D.Med.Sc
Bachelor Programme
Elective Odd
in Biology
Contact hours per

week
Lectures 1.7 40-50

assignment &
4.0 40-50
independent

ECTS
4.5 4.0 136 h 4.5
55%.
learning outcomes
242


CLO 1. Able to analyze the role and interaction of normal flora (disease-
causing microbes) with the body's immune system in causing disease in
humans (ILO 3)
CLO 2. Able to explain the factors involved in the pathology of infectious

diseases and their treatment (ILO 3)
CLO 3. Able to analyze the positive role of microbes to improve human

health (ILO 3)
CLO 4. Able to run and design simple experiments related to medical

microbiology (ILO 1, ILO 4, ILO 7)
CLO 5. Able to communicate in English and work together in analyzing,

compiling, and presenting results in presentations (ILO 5)
Content 1. Microbial flora in humans: commensals, pathogens and pathogenicity
mechanisms
2. Pathogenesis of disease by microorganisms
3. Immune response to infectious agents
4. Epidemiology of infectious diseases and control of disease outbreaks:
One Health Concept
5. Microbial diagnostics: immunodiagnostic and molecular diagnostic
approaches
6. Antibiotic resistant microorganisms: mechanisms, types of microbes
and solutions
7. Infectious diseases in the tropics: types, distribution and control
8. Important infectious diseases caused by microorganisms: description,
pathogenesis, diagnostic procedures in the laboratory and their
treatment/therapy
9. Therapeutic microbiology: the role of microorganisms (probiotics) as
agents of disease therapy in humans
10. Recent Developments in Medical Microbiology: Human Microbiome
Project
 Final assignment
243
 Lab report
 Lab performance/ attitudes
Laboratory practice score (PS): Report (30%) + presentation (50%) +

lab performance/ attitude (20%)
Class score (CS): presentation (40%) + Quiz (20%) + Final
assignment (40%)
Reading list  Berkowitz, F.E., & Jerris, R.C., 2016. Practical Medical Microbiology
for Clinicians. Willey Blackwell. New Jersey.
 Murray, P.R., Rosenthal, K.S. & Pfaller, M.A. 2020. Medical
Microbiology. 9th Edition. Elsivier
 Riedel, S., Morse, S.A., Mietzner, T. & Miller, S. 2019. Medical
Microbiology. 28th Edition. McGraw Hill. New York.
244
Module Handbook
Environmental Microbiology
Module Name: Environmental Microbiology

-
Irfan Mustafa, S.Si., M.Si., Ph.D
module:
Bachelor Programme
Elective Odd
in Biology
Contact hours per

week
Lectures 1.7 40-50

assignment &
4.0 40-50
independent

ECTS
4.5 4.0 136 h 4.5
55%.
learning outcomes
245


CLO 1. Able to explain the role of microorganisms as the main catalyst in

driving the flow of material on the earth globally which is a basic knowledge
in the use of microorganism activities as biological agents to solve
environmental problems.
CLO 2. Able to describe the various applications of microorganisms in

producing energy as an alternative to fossil fuels, recycling wastewater,
bioremediation, improving soil structure, and as an indicator of
environmental quality.
CLO 3. Able to explain the principle of the mechanism of interaction

between microorganisms and the association of microorganisms with other
living things such as humans, animals, and plants.
CLO 4. Able to critically evaluate scientific data articles and research

journals from the internet in the field of environmental microbiology
comprehensively to improve understanding of the role of microorganisms in
the environment.
CLO 5. Able to demonstrate a range of skills in the laboratory in the use of

microorganisms to solve problems in the environment.
CLO 6. Able to work and learn effectively independently and work together
in task groups, practicums, and small research projects as a form of caring,
needing each other, and being responsible to others.
CLO 7. Able to demonstrates basic skills in formulating scientific methods

in the form of research project proposals, demonstrate laboratory and field
research skills to test and investigate hypotheses including how to collect,
organize, analyze, evaluate, and interpret experimental data relevant
especially to the field of environmental microbiology using critical thinking
skills, quantitative approach and appropriate technology.
CLO 8. Able to demonstrates writing, oral and visual presentation skills to

effectively communicate microbiological scientific principles and
information using various learning media including scientific papers, and
oral presentations in English.
246
CLO 9. Develop microbiology disciplines to improve critical thinking skills,
communicate effectively, ethically, socially, and understand in an
international environment.
Content 1. The role of microbes in the carbon, nitrogen, sulphur, and iron cycles.
2. Energy production in the form of methane gas, microbial fuel cell,
bioethanol.
3. The role of microbes in recycled water treatment, bioremediation,
biomediated geomechanical processes, and environmental quality
indicators.
4. Associations between microbes and microbes with plants and animals.
5. The problem of microbes on the environment in the modern era.
6. International Journal of Microbiology articles with material that is in
accordance with the topic of the lecture.
7. Production of methane gas, manufacture of MFC, biodegradation of
crude oil, and nitrification with biofilm reactors.
examination  Class presentation (Comprehension, Slide presentation)
 Journal presentation
Class score (CS) : (quiz + class presentation + journal presentation) /

3
Practice score (PS) : (1 quiz + 2 presentation) / 3
Reading list  Bertrand, J.C., Caumette, P., Lebaron, P., Matheron, R.,
Normand, P. and Ngando, T.S. eds., 2015. Environmental
microbiology: fundamentals and applications (pp. 3-7).
Dordrecht: Springer.
 Grant, W.D. and Long, P.E., 2013. Environmental
microbiology. Springer Science & Business Media.
 Haug, R.T., 2019. Lessons in environmental microbiology.
CRC Press.
 Madsen, E.L., 2015. Environmental microbiology: from genomes to
biogeochemistry. John Wiley & Sons.
247
Module Handbook
Microbial Diversity
Module Name: Microbial Diversity

-
Dr. Suharjono, M.Si.
module:
Lecturer(s): 1. Dr. Suharjono, M.Si.
Bachelor Programme
Elective Odd
in Biology
Contact hours per

week
Lectures 1.7 40-50

assignment &
4.0 40-50
independent

ECTS
4.5 4.0 136 h 4.5
55%.
 General Microbiology (MAB62018)
 Biosystematics (MAB60004)
learning outcomes
248



CLO 1. Able to analyze the characteristics of phenotypic and phylogenetic

as well as analyze and identify the diversity, systematic and evolution of
microbes.
CLO 2. Able to plan and apply methods to study the distribution, diversity
and potential of microbes in the environment.

compiling, and presenting results in seminars.
CLO 4. Able to analyze the diversity and potential of microbes as well as

make plans and implementation methods of their use based on the results
of the analysis, and able to present them in English presentations.
Content 1. The concept of microbial diversity and evolution, methods of detection
of distribution and diversity and identification of microbes
2. Diversity of microbial symbionts of plants and animals as well as in
extreme environments
3. Biofilm-forming microbial diversity, metagenomics and microbial
diversity prospecting
4. International Journal Presentation
 Post-test
Class score (CS): [(Quiz x1)+(Presentation x 2)+(Journal Presentation x 2)]

/5
Practice score (PS): [(Post Test 1)+ (Presentation x1)] / 2
249
Reading list  Bull, A. 2003. Microbial Diversity and Bioprospect. ASM Press,
Washington, DC.
 Dash, H.R., & Das, S. 2018. Microbial Diversity in the Genomic Era.
Elsevier Science. UK.
 Gunjal, A. & Shinde, S. 2021. Microbial Diversity and Ecology in
Hotspots. Elsevier Science. UK.
250
Module Handbook
Industrial Microbiology
Module Name: Industrial Microbiology
-
Person responsible for the Tri Ardyati, M.Agr., Ph.D
module:
Lecturer(s): 1. Tri Ardyati, M.Agr., Ph.D
2. Yoga Dwi Jatmiko, S.Si., M.App.Sc., Ph.D.
Bachelor Programme
Elective Even
in Biology
Contact hours per

week
Lectures 1.7 40-50

assignment &
4.0 40-50
independent

ECTS
4.5 4.0 136 h 4.5
55%.
learning outcomes
251


CLO 1. Able to understand and explain the important aspects of microbes

related to industry and the principle of isolation and its strain improvement
for industrial application.
CLO 2. Able to explain the principle of fermentation and downstream as

well as upstream processing
CLO 3. Able to understand the production of important industrial

metabolites (primary and secondary metabolites)
CLO 4. Able to understand the quality control and safety carried out by
certain industries which are the objectives of field study activities.
CLO 5. Able to solve the problems related to important industrial

metabolites production by applying standard microbiological methods.
CLO 6. Able to work together to create, present, discuss, and maintain

structured assignments, make good and slide presentation.
Content 1. Introduction: Important Microbes in Industrial Microbiology
(Characteristics important microbes used in industry)
2. Metabolic pathway for the Biosynthesis of Industrial Microbiology
Products
3. Overproduction of metabolites of Industrial Microorganisms
4. Selection and improvement of micro-organisms of industrial interest
5. Bioprocessing: Fermentation Technology (basic techniques in
fermentation) upstream and downstream processing
6. Industrial Process and Products: primary metabolites products
(enzymes)
7. Industrial Process and Products: secondary metabolites products
(antibiotics)
8. Case study 1: From Biomass to Biofuel (ethanol)
9. Case study 2: Biotransformation and Fermentation in pharmaceutical
industry
10. Case study 3: Production of amino acids by fermentation
11. Case study 4: Production of organic acids by fermentation
12. Case study 5: Mushroom production
13. Case study 6: Treatment of wastes in industry
252
 Presentation
 Lab report
 Small group presentation (comprehension, slide presentation)
Laboratory practice score (PS): Report (40%) + presentation (60%)

Class score (CS): Mid test (30%) + final test (30%) + presentation
(20%) + Quiz (10%) + Assignment (10%)
Reading list  El-Mansi, E.M.T., Nielsen, J., Mousdale, D. and Carlson, R.P. eds.,
2018. Fermentation microbiology and biotechnology. CRC press.
 Okafor, N. and Okeke, B.C., 2017. Modern industrial microbiology
and biotechnology. CRC Press.
 Stanbury, P.F., A. Whitaker & S.J. Hall. 2003. Principles of
Fermentation Technology, Second Edition, Butter Worth Heinemann
 Waites, M.J., N.L. Morgan, J.S. Rockey & G. Higton. 2001. Industrial
Microbiology: an introduction. Blackwell Science.
253
Module Handbook
Agricultural Microbiology
Module Name: Agricultural Microbiology

-
module:
Bachelor Programme
Elective Even
in Biology
Contact hours per

week
Lectures 1.7 40-50

assignment &
4.0 40-50
independent

ECTS
4.5 4.0 136 h 4.5
55%.
learning outcomes
254


CLO 1. Able to explain the basic concepts of soil, plant, and microbial
interactions; sustainable farming systems, and identify the factors that
influence them.
CLO 2. Able to explain and identify the types and roles of microbes in the
elemental cycle in soil as well as PGPR and endophytes.
CLO 3. Able to explain and analyze the principles of composting, pest

control, and bioindicators of agricultural ecosystem quality
CLO 4. Able to explain methods of mass development, formulation, and

quality testing of effective microbial products for agriculture.
CLO 5. Able to demonstrates writing, oral and visual presentation skills to

effectively communicate microbiological scientific principles and
information using various learning media including scientific papers, and
oral presentations in English.
Content 1. Basic concepts of soil, plant and microbial interactions
2. Sustainable farming system.
3. The role of microbes as plant pathogens.
4. The role of microbes in the cycle of chemical elements in nature.
5. PGPR, endophytes, and mycorrhizae
6. Agricultural solid waste composting process
7. Pest control with microbes
8. Microbes as an indicator of the quality of agricultural ecosystems
9. Mass production, formulation, and quality standards of Effective
Microorganisms (EM) products.
10. Review and presentation of scientific papers related to agricultural
microbiology.
255
3
Practice score (PS) : (1 quiz + 2 presentation) / 3
Reading list  Burlage R.S., Atlas R., Stahl D., Geesey G. & Sayler G. 1998.
Techniques in Microbial Ecology. Oxford University press, Inc.
 Christon J.Hurst, Ronald L. Crawford, Jay L. Garland, David A.
Lipson, Aaron L. Mills. 2007. Manual of Environmental Microbiology.
ASM Press
 Pareek, R.P. and Pareek, N., 2019. Agricultural microbiology.
 Paul E. A. 2007. Soil Microbiology, Ecology and Biochemistry. 3rdEd.
Academic Press.
 Rao, N.S. ed., 2016. Advances in agricultural microbiology. Elsevier.
 Singh, D.P., Singh, H.B. and Prabha, R. eds., 2016. Microbial
inoculants in sustainable agricultural productivity (pp. 342-342). New
Delhi: Springer.
 Tate III, R.L., 2020. Soil microbiology. John Wiley & Sons.
 Van Elsas, J.D., Trevors, J.T., Rosado, A.S. and Nannipieri, P. eds.,
2019. Modern soil microbiology. CRC press.
 Varnam A.H. & Evans M.G. 2000. Environmental Microbiology.
Manson Publishing Ltd.
256
Module Handbook
Bioremediation
Module Name: Bioremediation

-
module:
Lecturer(s): 1. Dr. Suharjono, M.Si.
Bachelor Programme
Elective Even
in Biology
Contact hours per

week
Lectures 1.7 40-50

assignment &
4.0 40-50
independent

ECTS
4.5 4.0 136 h 4.5
55%.
learning outcomes
257


CLO 1. Able to analyze theoretical concepts on waste problems and their

biological treatment in the environment based on mono, inter and
multidisciplinary approaches
CLO 2. Able to make an experimental application plan for the use of

organisms to degrade waste and remediate waste polluted ecosystems
and present it in scientific forums based on valid data.
Content 1. Introduction and historical perspective on the development of the
concept of biodegradation and bioremediation.
2. Existence and ecological impact of toxic organic chemical waste.
3. The principle of metabolism for the biodegradation of organic chemical
compounds.
4. Factors affecting the biodegradation of pollutant compounds by
microorganisms.
5. Mechanism of metabolism and resistance in the process of biosorption
and bioaccumulation of pollutants by microorganisms.
6. Mechanism of biodegradation of pesticides, hydrocarbons, and
detergents by biofilm microorganisms.
7. Utilization of bioremediation methods to improve the quality of the
ecosystem of water, soil, and air polluted by waste.
8. Phytoremediation to improve ecosystem quality.
9. Application of the latest technology and genetically engineered
organisms for bioremediation of ecosystems.
10. Review and presentation of bioremediation journal articles
 Quiz/ pre/post-test

3
Practice score (PS) : (1 quiz/ pre/post-test + 2 presentation) / 3
258

Reading list  Bharagava, R.N. ed., 2017. Environmental pollutants and their
bioremediation approaches. CRC Press.
 Catherine N. and Mulligan. 2002. Environmental Biotreatment:
Technologies for Air, Water, Soil and Wastes. Government Institutes
Publ.
 Chandra, R. ed., 2015. Advances in biodegradation and
bioremediation of industrial waste.
 Clark D. P. & Pazdernik N. J. (2012) Environmental Biotechnology in
Biotechnology, Academic Cell, Elsevier Inc.
 Evans G. M. & Furlong J. C. (2003) Environmental biotechnology:
theory and application, John Wiley & Sons, Chichester
 Gill, S.S., Gill, R., Lanza, G. and Newman, L. eds.,
2016. Phytoremediation. Springer International Publishing.
 Mackova M., Dowling D., Macek T. eds (2006) Phytoremediation and
rhizoremediation, Springer-Verlag, Dordrecht
 Prasad, R. and Aranda, E., 2018. Approaches in bioremediation.
Springer International Publishing https://www. springer.
com/de/book/9783030023683.
 Saxena, G., Kishor, R. and Bharagava, R.N., 2020. Bioremediation of
industrial waste for environmental safety. Springer Singapore.
 Singh A., Kuhad R. C., Ward O. P. eds. (2009) Advances in applied
bioremediation, Springer Verlag, Berlin Heidelberg
 Singh A. & Ward O. P. eds. (2004) Applied Bioremediation and
Phytoremediation, Springer
 Terry, N. and Banuelos, G.S. eds., 2020. Phytoremediation of
contaminated soil and water. CRC Press.
259
Module Handbook

-
module:
Bachelor Programme
Elective Even
in Biology
Contact hours per

week
Lectures 1.7 40-50

assignment &
4.0 40-50
independent

ECTS
4.5 4.0 136 h 4.5
55%.
260
learning outcomes




forensics

 Paper project
261
 Lab report
 Final test
Class score (CS): Assignment/ paper project (10%) + presentation

(15%) + quiz (15%) + mid test (30%) + final test (30%)
Practice score (PS): quiz (20%) + report (30%) + presentation (20%)
+ final test (30%)

58). Birkhäuser.
Press.
978-1617795909. ISBN-10: 1617795909
0123749999
1439889708 • ISBN-13: 978-1439889701
3764360184
10: 1617796085
1405124946. ISBN-13: 978-1405124942
ISBN-10: 012410472X
13: 978-3639109030. ISBN-10: 3639109031.
262
FIELD OF INTEREST IN
BIOMEDIC
263
Module Handbook
Immunology
Module Name: Immunology

-
Person responsible for the Prof. Muhaimin Rifa’i, PhD.Med.Sc
module:
Lecturer(s): 1. Prof. Muhaimin Rifa’i, PhD.Med.Sc
2. Prof. Dra. Fatchiah, M.Kes, PhD
3. Dr. Sri Widyarti, M.Si
Bachelor Programme
Elective Odd
in Biology
Contact hours per

week
Lectures 1.7 40-50

assignment &
4.0 40-50
independent

ECTS
4.5 4.0 136 h 4.5
55%.
learning outcomes
264


CLO 1. Able to understand the mechanism of the occurrence of the

immune system and the factors that influence it.
CLO 2. Able to explain the history of immunology, the importance and

integration of immunology with other disciplines.
CLO 3. Able to explain the factors involved in the body's defense system
CLO 4. Able to explain the factors of abnormalities in the body's defense

system
CLO 5. Able to explain the occurrence of infectious diseases, and

autoimmune diseases
CLO 6. Able to describe manipulation and therapy using regulatory cells
CLO 7. Able to design research related to immunology

Content 1. Integration of immunology with other sciences and the history of the
development of immunology, adaptive and cellular immunity.
2. B and T lymphocytes, the function of the thymus in the development of
regulatory cells, and the mechanism for the formation of regulatory T
cells
3. Regulatory T cells, Allergy and Hypersensitivity
4. Autoimmune disease
5. Antibodies and antigens
6. B, T, NK, and MHC cell receptors
7. Manipulation of the immune system
8. Immunity to tumors: general characteristics, tumor antigens, immune
response, immunotherapy
9. Serology and tropical diseases
10. Effector mechanisms of immune response: cytokines, activation
11. Innate and adaptive immunity
12. Mucosal Immunity
13. Immunotherapy
265
 Presentation
 Lab report
 Pre/post-test
Class score (CS): Presentation (15%) + quiz (10%) + assignment

(15%), mid exam (30%) + final exam (30%)
Practice score (PS): Report (30%) + pre/post-test (15%) +
presentation (15%) + final practice exam (40%)
Reading list  Abbas, A.K., Lichtman, A. and Pillai, S., 2019. Basic Immunology:
Functions and Disorders of the Immune System, 6e: Sae-E-Book.
Elsevier India.
 Abbas, A.K., Lichtman, A.H. and Pober, J.S., 2000, Cellular and
Molecular Immunology, W.B. Saunders Co., Toronto;
 Actor, J.K., 2019. Introductory Immunology, 2nd: Basic Concepts for
Interdisciplinary Applications. Academic Press.
 Bona, C.A. and Bonilla, F.A., 2019. Textbook of immunology. CRC
press.
 Coico, R., 2021. Immunology: a short course. John Wiley & Sons.
 Delves, P.J., Martin, S.J., Burton, D.R. and Roitt, I.M., 2017. Roitt's
essential immunology. John Wiley & Sons.
 Harlow, E. and Lane, D., 1988, Antibodies A Laboratory Manual, Cold
Spring Harbor Laboratory, USA;
 Roitt, I.M. and Delves, P.J., 2001, Essential Immunology, Blackwell
Science;
 Roit, I., Brostoff, J., and Male., D., 2001, Immunology, 7th ed., Mosby
Publ.
266
Module Handbook
Human Genetics
Module Name: Human Genetics

-
Person responsible for the Prof. Dra. Fatchiah, M.Kes, PhD
module:
Lecturer(s): 1. Prof. Dra. Fatchiah, M.Kes, PhD
Bachelor Programme
Elective Odd
in Biology
Contact hours per

week
Lectures 1.7 40-50

assignment &
4.0 40-50
independent

ECTS
1.7 4.0 90.7 h 3
55%.
Recommended prerequisites Passed on Genetics (MAB61017)
learning outcomes
267


CLO 1. Able to explain differences in the pattern of inheritance of diseases

in humans.
CLO 2. Able to identify gene-environment interaction in behavior related
Genomics to the study of complex diseases, epigenetic and
transgenerational inheritance, and chromosomal and genomic disorders.
CLO 3. Able to explain the potential benefits and riSCU/challenges of

genomic medicine, and the ethical challenges raised by the prevalence of
genomic data.
CLO 4. Able to perform data analysis of genomic data to solve the

problems related to inheritance diseases in humans.
Content 1. Basic concepts of human genetics
2. Identify and Compare a Mendelian inheritance pattern of different
types of inheritance patterns of human disease
3. Identify a multigenic inheritance pattern.
4. Identify Gene-environment interaction in behavior related Genomics
to the study of complex diseases
5. Explain the basics of epigenetic and transgenerational inheritance.
6. Identify Chromosomal and genomic disorders
7. Explain the potential benefits and riSCU/challenges of genomic
medicine.
8. Explain some of the ethical challenges raised by the prevalence of
genomic data
9. Analyze data from genome-wide association studies.
Final score: Assignment (15%) + Quiz (15%), Mid exam (35%) +
Final exam (35%)
Reading list  Lewis, R., 2016. Human Genetics: The Basics. Garland Science.
 Read, A.P., 2018. Human molecular genetics. Garland Science.
 Rick Lewis. 2011. Basic Human Genetics. Routledge Taylor &
Francis group, NY. ISBN-10: 0415579864 . ISBN-13: 978-
0415579865,
268
 Ricki Lewis. 2011. Human Genetics concepts and application.
McGraw-Hill Education; 10 edition ISBN-13: 978-0073525303, ISBN-
10: 0073525308 or ISBN: 007246268x
 Robert Nussbaum, Roderick R. McInnes, and Huntington F Willard.
2007. Genetics in Medicine, 7th Edition. Sounders. ISBN:
9781416030805.
 Tom Strachan & Andrew Read.2003. Human Molecular genetics.
Garland Science; 3 edition. ISBN-10: 0815341822 . ISBN-13: 978-
0815341826.
269
Module Handbook
Virology
Module Name: Virology

-
module:
Bachelor Programme
Elective Odd
in Biology
Contact hours per

week
Lectures 1.7 40-50

assignment &
4.0 40-50
independent

ECTS
1.7 4.0 90.7 h 3
55%.
learning outcomes
270




CLO 1. Able to explain the scope of virus particle limitations as a non-living
system with a living system
CLO 2. Able to explain the development of virus discovery and the
underlying analysis technology
CLO 3. Able to explain the role of modern analytical technology in studying
and detecting viruses
CLO 4. Able to explain the structure of virus particles
CLO 5. Able to explain the basic classification of viruses
CLO 6. Able to explain how the virus transmits / spreads the virus
CLO 7. Able to explain the origin and evolution of viruses
CLO 8. Able to explain the mechanism of the entry of viruses into cells
CLO 9. Able to explain the mechanism of transcription, translation &
transport by viruses
CLO 10. Able to explain the mechanism of viral genome replication
CLO 11. Able to explain the assembly mechanism of virus particle
components and the release of virus from the host
CLO 12. Able to explain the relationship between viruses and the
mechanism of carcinogenicity
CLO 13. Able to explain current cases (case studies on Covid-19:
replication, pathogenesis, and strategies therapy)
CLO 14. Able to explain recent cases (case studies on Covid-19: ADE
antibody-dependent enhancement)
Content 1. Overview of lecture materials
2. Discovery of viruses
3. The Method of Studying Viruses and Virus Detection
4. Virus Particle Structure 5. Virus Classification
5. Transmission Virus
6. Origin & Evolution of Virus
7. Attachment & entry virus into cell
8. Transcription, translation & transport
9. Virus Genome Replication
10. Assembly & exit of virion from cells
11. Virus & Cancer
12. COVID-19: Coronavirus replication, pathogenesis, and therapeutic
strategies
13. COVID-19: ADE (Antibody dependent Enhancement)
271
 Understanding level

(40%), Understanding level (20%) + Class participation (15%)
Reading list  Fenner, F.J., Bachmann, P.A. and Gibbs, E.P.J., 2014. Veterinary
virology. Academic Press.
 Flint, S.J., Racaniello, V.R., Rall, G.F., Hatziioannou, T. and Skalka,
A.M., 2020. Principles of virology, Volume 2: pathogenesis and
control. John Wiley & Sons.
 Richman, D.D., Whitley, R.J. and Hayden, F.G. eds., 2020. Clinical
virology. John Wiley & Sons.
 https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3427559/
https://www.sciencedirect.com/science/article/pii/S120197121200119
1
 https://agrilife.org/vetmed/files/2012/10/LS_5_4_sample_lesson.pdf
 https://juniperpublishers.com/artoaj/pdf/ARTOAJ.MS.ID.556181.pdf
https://core.ac.uk/download/pdf/288872.pdf
https://link.springer.com/chapter/10.1007/978-1-4020-8761-5_7
 https://www.ccjm.org/content/ccjom/early/2020/05/12/ccjm.87a.20047
.full.pdf
 https://www.nature.com/articles/s41586-020-2538-8
https://www.nature.com/articles/s41587-020-0577-1
https://jvi.asm.org/content/94/5/e02015-19
272
Module Handbook
Module Handbook
Radiation Biology
Virology
Module Name: Radiation Biology

-
module:
2. Chomsin Sulistya, PhD
Bachelor Programme
Elective Odd
in Biology
Contact hours per

week
Lectures 1.7 40-50

assignment &
4.0 40-50
independent

ECTS
1.7 4.0 90.7 h 3
55%.
273
learning outcomes



CLO 1. Mastering the principles of biological response to the effects of

radiation, as well as analyzing the effects of radiation in biophysics,
biochemistry, molecular, cellular and organismal processes on
mutagenesis.
CLO 2. Able to compile and present articles in accordance with the

problem.
Content 1. Irradiation of cells: direct action in cell damage by radiation, indirect
action of cell damage by radiation, fate of irradiated cells
2. Type of radiation damage: Time scale, Classification of radiation
damage, Somatic and genetic effects, Stochastic and deterministic
(non-stochastic) effects, Acute vs. chronic effects, Total body
radiation response, Fetal irradiation
3. Cell survival and dose-response curves
4. Analysis of radiation damage in tissue
5. Cell susceptibility and resistance during cell cycle and cell death
6. Classification of radiation in radiobiology
7. The effect of oxygen on the influence of radiation
8. Radioprotectors and radiosensitizers
9. Dose rate and fractionation
10. Relative biological effectiveness
 Comprehension

(40%), Comprehension (20%) + Class participation (15%)
Reading list  Carroll, Q.B., 2018. Radiography in the Digital Age: Physics-
exposure-radiation biology. Charles C Thomas Publisher.
274
 Gunderson, L.L. and Tepper, J.E., 2015. Clinical radiation oncology.
Elsevier Health Sciences.
 Joiner, M.C. and van der Kogel, A.J. eds., 2018. Basic clinical
radiobiology. CRC press.
 Nias, A.H.W. 1998. An Introduction to Radiobiology. John Wiley &
Sons, Inc., New York.
275
Module Handbook
Medical Microbiology
Module Name: Medical Microbiology

-
Yoga Dwi Jatmiko, S.Si., M.App.Sc., Ph.D.
module:
Lecturer(s): 1. Yoga Dwi Jatmiko, S.Si., M.App.Sc., Ph.D.
2. Prof. Muhaimin Rifa’i, S.Si., Ph.D.Med.Sc
Bachelor Programme
Elective Odd
in Biology
Contact hours per

week
Lectures 1.7 40-50

assignment &
4.0 40-50
independent

ECTS
4.5 4.0 136 h 4.5
55%.
learning outcomes
276



CLO 1. Able to analyze the role and interaction of normal flora (disease-
causing microbes) with the body's immune system in causing disease in
humans (ILO 3)
CLO 2. Able to explain the factors involved in the pathology of infectious

diseases and their treatment (ILO 3)
CLO 3. Able to analyze the positive role of microbes to improve human

health (ILO 3)
CLO 4. Able to run and design simple experiments related to medical

microbiology (ILO 1, ILO 4, ILO 7)

compiling, and presenting results in presentations (ILO 5)
Content 1. Microbial flora in humans: commensals, pathogens and pathogenicity
mechanisms
2. Pathogenesis of disease by microorganisms
3. Immune response to infectious agents
4. Epidemiology of infectious diseases and control of disease outbreaks:
One Health Concept
5. Microbial diagnostics: immunodiagnostic and molecular diagnostic
approaches
6. Antibiotic resistant microorganisms: mechanisms, types of microbes
and solutions
7. Infectious diseases in the tropics: types, distribution and control
8. Important infectious diseases caused by microorganisms: description,
pathogenesis, diagnostic procedures in the laboratory and their
treatment/therapy
9. Therapeutic microbiology: the role of microorganisms (probiotics) as
agents of disease therapy in humans
10. Recent Developments in Medical Microbiology: Human Microbiome
Project
277
 Final assignment
 Lab report
Laboratory practice score (PS): Report (30%) + presentation (50%) +

lab performance/ attitude (20%)
Class score (CS): presentation (40%) + Quiz (20%) + Final
assignment (40%)
Reading list  Berkowitz, F.E., & Jerris, R.C., 2016. Practical Medical Microbiology
for Clinicians. Willey Blackwell. New Jersey.
 Murray, P.R., Rosenthal, K.S. & Pfaller, M.A. 2020. Medical
Microbiology. 9th Edition. Elsivier
 Riedel, S., Morse, S.A., Mietzner, T. & Miller, S. 2019. Medical
Microbiology. 28th Edition. McGraw Hill. New York.
278
Module Handbook
Vaccine Engineering
Module Name: Vaccine Engineering
-
Prof. Muhaimin Rifai, S.Si., Ph.D.Med.Sc.
module:
Lecturer(s): 1. Prof. Widodo, S.Si., M.Si., Ph.D.Med.Sc
2. Prof. Muhaimin Rifai, S.Si., Ph.D.Med.Sc.
Bachelor Programme
Elective Even
in Biology
Contact hours per

week
Lectures 1.7 40-50

assignment &
4.0 40-50
independent

ECTS
1.7 4.0 90.7 h 3
55%.
learning outcomes
279



CLO 1. Able to able to understand and explain the basic principles of

vaccine manufacture.
CLO 2. Able to understand the vaccine technology development in order to

solve problems in the field of biology

Content 1. History of vaccine technology development.
2. The use of hybridoma.
3. B cell recognition and antibody production
4. Antibody binding.
5. Antigen Presenting cell and antigen presentation.
6. From genome to vaccine.
7. Genetic diversity, and mechanism of pathogen escape from
immunocompetent cells.
8. Map of epitopes based on base sequence and three-dimensional
structure.
9. Peptide formation design for immunization.
10. DNA vaccine design, and DNA vaccine adjuvant.
11. Manufacture of immunostimulators (natural and artificial
immunostimulators).
12. Antigen delivery strategies in immunization.
13. Mucosal adjuvants (Adjuvants in vaccines for non-infectious
diseases).
Final exam (35%)
Reading list  Bloom, B.R. & Lambert, P.H. 2016. The vaccine book. Elsevier
Science. UK
280
 Virgil E J.C. Schijns and Derek T. O’hagan, 2006,
immunopotentiators in modern vaccine, Elsevier, USA.
 Mark Saltzman, Hong shen and Janet L. Brandsma, DNA Vaccine:
methods and protocols, 2006, Human press, USA.
 Flower Darren R. Bioinformatics for Vaccinology Publisher: UK, John
Wiley & Sons Inc. 2008. ISBN: 9780470027110.
 Flower Darren R. Immunoinformatics: Predicting Immunogenicity In
Silico Publisher: New Jersey, Humana Press. 2007. ISBN:
9781603271189.
 Kindt, Thomas J., Osborne Barbara A. Goldsby Richard A. Kuby
Immunology 6th Edition. Publisher: New York, W. H. Freeman. 2007.
ISBN: 9780716785903.
 Lund Ole, Nielsen Morten, Lundegaard Claus, Kesmir Can, Brunak
SÃ ̧ren. Immunological Bioinformatics. Publishesr: London, MIT
PRess 2005 ISBN: 0262122804.
 Foundation Novartis.Immunoinformatics: Bioinformatic Strategies for
Better Understanding of Immune Function. Publisher: Chichester,
John Wiley & Sons Inc. 2003. ISBN: 0470853565.
 Roitt Ivan Delves Peter. Roitt's Essential Immunology 10th
Edition.Publisher: Canada, Blackwell. 2001, ISBN: 0632059028.
 Ellis Ronald W. Vaccines: New Approaches to Immunological
Problems. Publisher.
281
Module Handbook
Bioinformatics
Module Name: Bioinformatics

-
module:
Bachelor Programme
Elective Even
in Biology
Contact hours per

week
Lectures 0.8 40-50

assignment &
2.0 40-50
independent

ECTS
6.5 2.0 136 h 4.5
55%.
- Basic Biocomputation (MAB60002)
- Genetics (MAB61017)
282
learning outcomes




CLO 1. Able to understand the basics of computational biology and
bioinformatics, including browsing and searching raw data on
GeneBank: Nucleotide Database.
CLO 2. Able to analyze basic nucleotide sequence using BLAST, primary
design & Identification restriction mapping.
CLO 3. Able to analyze SNP mapping & genome diversity and identify
polymorphism and genome variation.
CLO 4. Able to create a phylogenetic tree and identify taxon organisms in
the molecular hierarchy.
CLO 5. Able to analyze protein sequence and design 3D protein modeling.
CLO 6. Able to analyze protein folding: homology modeling, threading, ab
initio methods, and make protein network pathway.
CLO 7. Able to present their abilities with the chosen topics as a teamwork.
Content 1. Raw data
2. Blast analysis, Primary design
3. dbSNP Sequence Variation, Physical mapping
4. Polymorphism Identification, Submission Sequence
5. Phylogenetic analysis
6. Taxonomy database. Hierarchical mapping
7. Protein sequence analysis
8. 3D protein analysis
9. Protein folding
10. Protein network pathway
11. Nucleotide database to genome mapping and analysis Genome
mapping and analysis
12. Polymorphism to taxonomy mapping Taxonomy analysis
13. 3D protein to protein folding & network pathway Proteomic analysis
283
 Lab report
 Pre/post-test
 Final test

Practice score (PS): pre/post-test (20%) + report (30%) +
presentation (20%) + final test (30%)

Reading list  Baxevanis, A.D., Bader, G.D. and Wishart, D.S. eds.,
2020. Bioinformatics. John Wiley & Sons.
 Cynthia Gibas and Per Jambeck, 2001, Developing Bioinformatics
Computer Skills, O’Reilly Media publisher.
 Jean-Michel Claverie, Ph. D., Cedric Notredame, Ph.D. 2006,
Bioinformatics For Dummies, 2nd Edition, For Dummies Publisher
 Lesk, A., 2019. Introduction to bioinformatics. Oxford university press.
 Marketa Zvelebil and Jeremy O. Baum, 2008, Understanding
bioinformatic, Garland Science, Taylor and Francis group publisher.
 Huaiyu Mi and Paul Thomas Methods in Molecular Biology, 2009,
Volume 563, Part 2, 123-140
 GeneBank: NCBI GeneBank: www.ncbi.nlm.nih.gov/,
 DDBJ: http://www.ddbj.nig.ac.jp/
 Embl: http://www.ebi.ac.uk/
 Protein analysis: http://www.expasy.ch/sprot/sprot-top.html
 protein characterization http://www.mips.biochem.mpg.de dan
http://www.protomap.cs.huji.ac.il
 Database alligment sequence: Hovergen http://pbil.univ-
lyon1.fr/databases/hovergen.html (vertebrate alignments)
 Pfam http://www.sanger.ac.uk/Software/Pfam/ (protein domain
alignments and profile HMMs)
 BLOCKS http://blocks.fhcrc.org/
 Ribosomal Database Project http://rdp.cme.msu.edu/html/ alignments
and trees derived from rRNA sequences2.
284
Module Handbook
Cancer Biology
Module Name: Cancer Biology

-
Prof. Widodo, S.Si., M.Si., Ph.D.Med.Sc
module:
Lecturer(s): 1. Prof. Widodo, S.Si., M.Si., Ph.D.Med.Sc
2. Prof. Muhaimin Rifai, S.Si., Ph.D.Med.Sc.
Bachelor Programme
Elective Even
in Biology
Contact hours per

week
Lectures 1.7 40-50

assignment &
4.0 40-50
independent

ECTS
1.7 4.0 90.7 h 3
55%.
learning outcomes
285



CLO 1. Able to understand the cell cancer phenomena and its preventive
strategies and developing its therapy.

Content 1. Introduction (basic principles and conceptual framework of cancer).
2. Diet, environmental factors, and cancer.
3. Tumor viruses, growth factors and oncogenes, and signal
transduction.
4. Tumor suppressor genes, cell cycle, p53, apoptosis.
5. Cell immortalization and tumorigenesis.
6. Angiogenesis, invasion, and metastasis.
7. Tumor immunity, immunosurveillance, and immunotherapy.
Final exam (35%)
Reading list  Adami, H.O. Hunter, D. & Trichopoulos, D. 2008. Textbook of Cancer
Epidemiology. Oxford University Press, USA
 Greenstein, J.P., 2016. Biochemistry of cancer. Elsevier.
 Tannock, I.F., P Hill, R., Bristow, R.G. and Harrington, L., 2013. The
basic science of oncology. McGraw-hill.
 Pecorino, L. 2005. Molecular Biology of Cancer. Oxford University
Press, USA
 Weinberg, R.A., 2013. The biology of cancer. Garland science.
 Watson, M. 2006. Oncology. Oxford University Press, USA.
286
Module Handbook
Science Perspective of Traditional Medicine
Module Name: Science Perspective of Traditional Medicine

-
Prof. Sutiman Bambang Sumitro, S.U., D.Sc.
module:
Lecturer(s): 1. Prof. Sutiman Bambang Sumitro, S.U., D.Sc.
Bachelor Programme
Elective Even
in Biology
Contact hours per

week
Lectures 1.7 40-50

assignment &
4.0 40-50
independent

ECTS
1.7 4.0 90.7 h 3
55%.
Recommended prerequisites Passed on Biochemistry and Instrumentation (MAB61014)
learning outcomes
287


CLO 1. Able to understand the theory or concept of good clinical trial

guidelines for herbal products and be able to get an overview of clinical
trials conducted from scientific articles.
CLO 2. Have the opportunity to further develop their abilities, think

critically, and dare to express opinions, so as to increase their self-
confidence, also train students' skills in using information technology
(internet) to access information through scientific journals both nationally
and internationally, and train teamwork and skills in making presentations.
Content 1. Introduction (philosophy, culture and local wisdom, legal basis, scope
of discussion, terminology)
2. Research on herbal medicine based on community service
3. Herbal medicine scientific methodology.
4. Guidelines for traditional medicine clinical trials
5. Guidelines for good clinical trials in Indonesia
requirements and forms of  Quiz/Assignment
Final score: Presentation (15%) + Quiz (15%), Mid exam (35%) +
Final exam (35%)
Reading list  Direktorat Pengawasan Obat Tradisional, 2000, Pedoman
Pelaksanaan Uji Klinik Obat Tradisional, Direktrorat Jenderal
Pengawasan Obat dan Makanan, Departemen Kesehatan RI,
Jakarta
 Badan POMRI, 2001, Pedoman Cara Uji Klinik yang Baik di
Indonesia, Jakarta
 Badan POM, 2005, Peraturan perundang-undangan di bidang obat
tradisional, obat herbal terstandar, dan fitofarmaka, Badan Pengawas
Obat & Makanan, Jakarta.
 Peletier, M.A., Van Santen, R.A. and Steur, E. eds., 2019. Complexity
science: an introduction. World Scientific.
288
Module Handbook
Histopathology
Module Name: Histopathology

-
Drs. Aris Soewondo, M.Si.
module:
Bachelor Programme
Elective Even
in Biology
Contact hours per

week
Lectures 1.7 40
assignment &
4.0 40
self-study)

ECTS
7.4 4.0 182.4 h 6

55%.
Recommended prerequisites Passed on Animal Histology (MAB62011)
learning outcomes
289

and safety.

applications.
CLO 1. Able to understand the theoretical concepts about the

histopathology condition of various organs and tissues.

related to histopathology.
CLO 3. Able to make a histology preparate using standard laboratory

equipment/instruments in a teamwork.
Content 1. Adaptation, Cell Injury and Cell Death

2. Inflammation
3. Neoplasia
4. Gastrointestinal Histopathology
5. Histopathology of the Respiratory Tract and Lungs
6. Histopathology of the Endocrine System
7. Histopathology of the Circulatory System
8. Histopathology of the liver
9. Histopathology of the Urinary System
10. Histopathology of the Genital System
11. Histopathology of the mammary glands
12. Skin
13. Histopathology of the Nervous System
14. Histopathology of sensory organs
examination  Assignment/ Paper project
 Lab report
 Pre/post-test
Class score (CS): Assignment/paper project (20%), quiz (10%), mid test
(35%), and final test (35%)
Practice score (PS): Pre/post-test (20%), report (40%), and final practice
exam (40%)
290

Reading list  Kumar,V., Abbas, A.K. and Aster, J.C. 2018 .Robbins
Basic Pathology, 10th ed.. Elsevier Inc. Philadelphia
 Kumar,V., Abbas, A.K., Fausto, N. and Aster, J.C. 2019 .Robbins
and Cotran Pathologic Basis of Disease, 18th ed.. Saunders Elsevier
Inc. Philadelphia
 Mohan, H. 2015, Textbook of Pathology. 7th ed. Jaypee Brothers
Medical Publishers (P) Ltd. Daryaganj
 O’Dowd, G., Bell, S., and Wright, S. 2020. Weather’s Pathology. A
Text, Atlas and Review of Histopathology. 6th ed. Elsevier. London.
 Rubin, E. and Reisner, H.M. 2014. Essentials of Rubin’s pathology .
6th ed. Lippincott Williams & Wilkins, Philadelphia
 Zachary, J.F. 2017. Pathologic Basis of Veterinary Diseases. 6thed.
Elsevier Inc. Missouri.
291
Module Handbook

-
module:
Bachelor Programme
Elective Even
in Biology
Contact hours per

week
Lectures 1.7 40-50

assignment &
4.0 40-50
independent

ECTS
4.5 4.0 136 h 4.5
55%.
292
learning outcomes




forensics
 Paper project
 Lab report
293
 Final test

Practice score (PS): quiz (20%) + report (30%) + presentation (20%)
+ final test (30%)

58). Birkhäuser.
Press.
978-1617795909. ISBN-10: 1617795909
0123749999
1439889708 • ISBN-13: 978-1439889701
3764360184
10: 1617796085
1405124946. ISBN-13: 978-1405124942
ISBN-10: 012410472X
13: 978-3639109030. ISBN-10: 3639109031.
294
Module Handbook
Parasitology
Module Name: Parasitology
-
Dr. Bagyo Yanuwiadi
module:
Lecturer(s): 1. Dr. Bagyo Yanuwiadi
Bachelor Programme
Elective Even
in Biology
Contact hours per

week
Lectures 1.7 40-50

assignment &
4.0 40-50
independent

ECTS
1.7 4.0 90.7 h 3
55%.
Recommended prerequisites Passed on Diversity of Fauna (MAB62007)
learning outcomes
295


CLO 1. Able to develop implementation of various sampling methods for

Parasitology research so that it can be used to conduct research
CLO 2. Able to develop solutions to overcome the problems related to

parasite and present it with full responsibility according to theory and data.
Content 1. Introduction: What is the Parasitology?
2. Systematics and biology in general
3. Various biological innovations and their application to Parasitology
4. Research results from lecturers and other researchers
5. Various biological findings from journals
6. Various sampling methods and scientific reasons of the action and
the selection strategy for Parasitology research
7. Development of Parasitology research as a solution to problems in
the field
Final exam (35%)
Reading list  Bogitsh, B.J., Carter, C.E. and Oeltmann, T.N., 2018. Human
parasitology. Academic Press.
 Garcia, L.S. ed., 2021. Practical guide to diagnostic parasitology.
John Wiley & Sons.
 Janovy, J & Larry, R. 2007. Foundations of Parasitology.
McGrawHill-Higher Education, Boston.
 Loker, E. and Hofkin, B., 2015. Parasitology: a conceptual approach.
Garland Science.
 Prianto, J. Tjahaya, PU. & Darwanto, 2002. Atlas Parasitologi
Kedokteran. PT Gramedia Utama, Jakarta.
 Taylor, M.A., Coop, R.L. and Wall, R.L., 2015. Veterinary
parasitology. John Wiley & Sons.
296
Module Handbook
Microscopic Technique
Module Name: Microscopic Technique
-
Dr. Sri Widyarti, M.Si
module:
2. Prof. Sutiman Bambang Sumitro, S.U., D.Sc
Bachelor Programme
Elective Even
in Biology
Contact hours per

week
Lectures 1.7 40-50

assignment &
4.0 40-50
independent

ECTS
4.5 4.0 136 h 4.5
55%.
learning outcomes
297



success life skills through understanding the basics of light microscopy and
various contrast systems in microscopes.
CLO 2. Able to understand the coordination of life, regulation of growth and

development of living things and their analysis through knowledge of
microphotography techniques
CLO 3. Able to understand the concept of research and scientific writing

through the preparation and presentation of reports in groups
Content 1. Basics of light microscopy
2. Contrast system in light microscope
3. Microphotography and videomicrograph - recording techniques
4. Electron Microscopy
5. Micrography
 Lab report
 Pre/post-test
Class score (CS): Assignment (15%) + Quiz (15%), Mid exam (35%)
+ Final exam (35%)
Practice score (PS): Pe/post-test (20%), report (40%), and final
practice exam (40%)
Reading list  Goldstein, J.I., Newbury, D.E., Michael, J.R., Ritchie, N.W., Scott,
J.H.J. and Joy, D.C., 2017. Scanning electron microscopy and X-ray
microanalysis. Springer.
 Herman, B., 2020. Fluorescence microscopy. Garland Science.
298
 Jerome, W.G. and Price, R.L., 2018. Basic confocal microscopy.
Berlin: Springer.
 Mertz, J., 2019. Introduction to optical microscopy. Cambridge
University Press.
 Ratcliff, M.J., 2016. The quest for the invisible: microscopy in the
Enlightenment. Routledge.
 Ul-Hamid, A., 2018. A beginners' guide to scanning electron

microscopy (Vol. 1, p. 402). Cham: Springer International Publishing.
299
Module Handbook

-
module:
Lecturer(s):

Bachelor Programme
Elective Even
in Biology
Contact hours per

week
Lectures 1.7 40
assignment &
4.0 40
independent

ECTS
7.4 4.0 182.4 h 6
55%.
300
learning outcomes




and quantitatively
applications
genome data
results.
8. DNA sequencing
301
 Enthusiasm
 Lab report
 Placement test
Class score (CS): paper project (10%), enthusiasm (10%), quiz

(10%), mid test (35%), and final test (35%)
Practice score (PS): Placement test (20%), report (40%), and final
practice exam (40%)

USA:: Springer.
Science.
Oxford.
Wiley & Sons.
302
Sons.
Spring
303
NON-FIELD OF INTEREST
304
Module Handbook
Bioentrepreneur
Module Name: Bioentrepreneur
-
Prof. Luchman Hakim, M.Agr.Sc.,Ph.D.
module:
Lecturer(s): Prof. Luchman Hakim, M.Agr.Sc.,Ph.D.
Bachelor Programme
Elective Odd
in Biology
Contact hours per

week
Lectures - -
assignment &
- -
self-study)
Depend on the student
Laboratory practice 8.5 number who enrolled
this course

ECTS
8.5 - 136 h 4.5
55%.
learning outcomes
305

and safety.

applications.
ILO 8. Able to understand and has basic entrepreneurship characters

relevant to biology.
CLO 1. Able to explain the basic principles of bio-entrepreneurship which is

the integration of conservation biology and entrepreneurship.
CLO 3. Able to demonstrate a practical implementation of scientific

foundations and biological thinking as a basis for entrepreneurship
development.
CLO 2. Able to prepare activity proposals and run the bio-entrepreneurship

pilot projects in a teamwork.
Content 1. Introduction to bio-entrepreneurship: conservation-entrepreneurship
integration
2. Case studies and best practical bio-entrepreneurship
3. Preparation of bio-entrepreneurship proposals
4. Bio-entrepreneurship feasibility study
5. Implementation of the bio-entrepreneurship project

requirements and forms of  Pilot project report
Practice score: Pilot project report (30%) + pre/post-test (20%) + class

participation/ discussion (20%) + final practice exam (30%)

Reading list  Agarwal, S., Kumari, S. and Khan, S., 2021.
Bioentrepreneurship and Transferring Technology Into Product
Development. IGI Global.
 Cromie, S., McGowan, P., & Hill, J. 1995. Marketing and
entrepreneurship in SMEs: An innovative approach (Vol. 1).
London: Prentice Hall.
 Steyaert, C., & Hjorth, D. (Eds.). 2008. Entrepreneurship as
social change: A third new movements in entrepreneurship
book. Edward Elgar Publishing.
306
 Langer, R., 2018. Mastering Bioentrepreneurship. Innovative
Research in Life Sciences: Pathways to Scientific Impact,
Public Health Improvement, and Economic Progress, p.291.
 Drucker, P. 2014. Innovation and entrepreneurship. Routledge.
 Schaper, M. (Ed.). 2012. Making ecopreneurs: developing sustainable
entrepreneurship. Gower Publishing, Ltd.
307
Module Handbook
Population Genetics
Module Name: Population Genetics
-
Prof. Dr. Ir. Estri Laras Arumingtyas, M.Sc.St
module:
2. Mufidah Afiyanti, S.P., Ph.D
Bachelor Programme
Elective Even
in Biology
Contact hours per

week
Lectures 1.7 40-50

assignment &
4.0 40-50
independent

ECTS
1.7 4.0 90.7 h 3
55%.
308
learning outcomes



CLO 1. Able to analyze population structure based on allele frequencies,

genes, and genotypes.
CLO 2. Able to apply the application of Hardy Weinberg's law to

populations in nature and can explain the factors that influence it.
CLO 3. Have population structure analysis skills, perform secondary data

analysis to understand changes in population structure
CLO 4. Able to take responsibility and actively contribute to a teamwork.

Content 1. Definition of population, gene pool, allele frequency and genotype
Calculation of allele frequency, genotype frequency.
2. Hardy Weinberg Law and its Requirements
3. The relationship between allele frequency, genotype frequency,
gamete formation and the formation of new individuals (offspring)
4. Homozygosity and heterozygosity analysis
5. Selection, mutation, migration and their effect on allele and genotype
frequencies
6. Marriage types: random and non-random
7. Changes in allele frequency due to directed mating
8. Effect of genetic drift on population structure
9. Multi-locus evolution and heterogeneity in fitness (Adaptive
landscape, Spatial variation, and Temporal variation)
10. Quantitative genetics: Measuring natural selection, G-Matrix, and
QTL simplified
11. Inbreeding depression and mating systems (Evolution of selfing rate,
Modifier models, and Breeding system evolution)
12. Population substructure (F statistics. Migration, Hierarchical F,
derived from coalescent theory, and Likelihood, Bayesian statistics)
13. Evolution of recombination
309
Final exam (35%)
Reading list  Crow, J.F., 2017. An introduction to population genetics theory.
 Hamilton, M.B., 2021. Population genetics. John Wiley & Sons.
 Hartl DL & Clark AG 2007 Principles of Population Genetics, 4th
Edition. Sinauer Associates: Sunderland, Massachusetts;
 Perry GH, Dominy NJ, Claw KG, et al. 2007. Diet and the evolution of
human amylase gene copy number variation. Nature Genetics 39,
1256-1260
 Novembre J, Pritchard JK, Coop G. 2007. Adaptive drool in the gene
pool. Nature Genetics 39, 1188-1190.
310
Module Handbook
Special Topics Supporting Thesis
Module Name: Special Topics Supporting Thesis
-
Ir. Retno Mastuti, M.Agr.Sc., D.Agr.Sc.
module:
Lecturer(s): 1. Ir. Retno Mastuti, M.Agr.Sc., D.Agr.Sc.
3. Undergraduate thesis supervisor candidates
Bachelor Programme
Elective Even
in Biology
Contact hours per

week
Lectures - -
assignment &
- -
self-study)
this course

ECTS
8.5 - 136 h 4.5
55%.
Recommended prerequisites  The total credit units achieved is more than 120 credit units
 The GPA ≥ 2,0
 It is not programmed in the same semester as Thesis Proposal
311
Seminar (MAB60032)
learning outcomes


and safety.

applications.
CLO 1. Able to implement and understand the research techniques related

to thesis
CLO 2. Able to compile a thesis research proposal draft
CLO 3. Able to present the preliminary research report and thesis research
proposal draft to get some inputs.
Content 1. Reviewing articles/journals/textbooks to compile a synthesis to
improve the theoretical basis of the proposal draft.
2. Reviewing articles/journals/textbooks to develop research methods to
improve proposal drafts.
3. Reviewing articles/journals/textbooks to make data
analysis/interpretation to improve the proposal draft.
4. Presentation of the undergraduate thesis proposal draft
5. Deepening of laboratory/field work techniques.
Study and examination Final score : discipline and independence (20%), quality of work (25%),
requirements and forms of academic integrity (15%), thesis proposal draft (20%), creativity and idea
examination development (20%).

Reading list  Varies depend on the thesis topics
 Fakultas Matematika dan Ilmu Pengetahuan Alam, 2020 PEDOMAN
PENDIDIKAN PROGRAM SARJANA TAHUN AKADEMIK 2020/2021.
Fakultas Matematika dan Ilmu Pengetahuan Alam, Universitas
Brawijaya. viewed 27 October 2021. https://mipa.ub.ac.id/wp-
content/uploads/2020/08/pedoman-pendidikan-S1-BIO-2020-2021-
24.08.2020-1.pdf.
312
ENRICHMENT PROGRAM
313
Enrichment Program Information
The Merdeka-Belajar-Kampus Merdeka (MBKM) program launched by the government in 2020 with aim
to develop conditions and provide opportunities for students to learn and self-actualize so that they can
be absorbed into the world of work. One of the strategies for achieving MBKM is the formulation of a
student apprentice system at prospective institutions as their target workplace after graduation.
Students are encouraged to carry out activities both lectures and/or practical internships for 1-3
semesters which are equivalent to 20 credit units/semester.
The flexibility demanded by the MBKM program requires adjustments to the 2019 Bachelor Programme
in Biology (BPB) curriculum so that the integration of Enrichment Program (EP) in the MBKM program
is needed, especially regarding the plan to implement learning rights for a maximum of three semesters
outside the study programme as well as the management and mechanism for implementing the
curriculum. The EP, which is planned to be implemented for the next two years (when the 2019 batch of
students are in semester 7), must be accelerated and implemented this year. The initial step to
integrate EP into MBKM is carried out by creating a linkage matrix (Table 1).
Table 1. The relationship between five learning schemes outside the BPB Enrichment Program (EP)
with eight learning activities launched by the Ministry of Education and Culture
Overseas
EP Schema/ Community Industrial
Research Entrepreneurship Internship/
MBKM Activities Development Internship
Credit Transfer
Student ✓
exchange
Internship ✓
Research ✓ ✓
Independent ✓ ✓ ✓
study/ project
Projects in the ✓
village
Humanity project ✓
Teaching in ✓
schools
Entrepreneurial ✓
activities
314
The EP design is an activity with a total load of 17 credits as shown in Table 2.
Table 2. Enrichment Program design in BPB curriculum

Community Industrial
Research Entrepreneurship Credit Transfer
Development Internship
Internship Internship Internship

Internship Internship (3 SCU)
(3 SCU) (3 SCU) (3 SCU)
Research Community Industrial

Main Business Initiation
Internship Development Internship
Project (5 SCU)
(5 SCU) (5 SCU) (5 SCU)
Community
EP Research Business Research and
Development
Supporting Management Management Development Credit transfer
Appraisal
Course 1 (3 SCU) (3 SCU) (3 SCU) in Indonesian
(3 SCU)
and overseas
EP Scientific Business Community Business university.
Supporting Communication Communication Communication Communication
Course 2 (3 SCU) (3 SCU) (3 SCU) (3 SCU)
EP Attitude, Ethics, Attitude, Ethics, Attitude, Ethics, Attitude, Ethics,

Supporting and Leadership and Leadership and Leadership and Leadership
Course 3 (2 SCU) (2 SCU) (2 SCU) (2 SCU)
Proposal Seminar Proposal Seminar Proposal Seminar Proposal

Seminar
(1 SCU) (1 SCU) (1 SCU) Seminar (1 SCU)
315
Module Handbook
Attitude, Ethics, and Leadership
Module Name: Attitude, Ethics, and Leadership

-
Dian Siswanto, S.Si., M.Sc., M.Si., Ph.D
module:
Lecturer(s): 1. Dian Siswanto, S.Si., M.Sc., M.Si., Ph.D
2. Internship supervisors
Bachelor Programme
Elective Odd
in Biology
Contact hours per

week
Lectures - -
assignment &
- -
self-study)
this course

ECTS
5.67 - 90.7 h 3
learning outcomes
316
CLO 1. Able to recognize the importance of ethical issues in

research/society/business/entrepreneurial/cross-cultural and leadership in
research/social/business/entrepreneurial/education activities abroad.
CLO 2. Able to demonstrate the importance of ethics in social, economic,

and cultural environments.
CLO 3. Able to demonstrate critical thinking skills in managing

research/society/business/entrepreneurship/education abroad according to
the culture of the local community.
CLO 4. Able to demonstrate confidence in research/society/initiating

business/industrial business//education abroad, disseminating research
results/action research/promoting business products/services/portfolios,
making decisions and the importance of the activities to other parties.
CLO 5. Able to be responsible for the choice of doing research / community

/ business / entrepreneurship / cross-cultural, risk and success obtained.
Content 1. Application of ethical principles.
2. Corporate social responsibility.
3. Global ethics, rights, and obligations of interested parties.
4. Consumer rights and halal, safe and healthy products.
5. Ethics in publication/dissemination/marketing, report generation.
investment management and the environment.
Study and examination Form of examination:

requirements and forms of  Interaction process with the supervisors and others
examination  Interview / oral test
Final score : interaction process (40%) + interview/ oral test (60%).

Reading list Varies depend on the internship topics
317
Module Handbook
Research Internship
Module Name: Research Internship

-
module:
Bachelor Programme
Elective Odd
in Biology
Contact hours per

week
Lectures - -
assignment &
- -
self-study)
this course

ECTS
14.17 - 226.7 h 7.5

learning outcomes
318
CLO 1. Able to recognize the importance of ethical issues in

research/society/business/entrepreneurial/cross-cultural and leadership in
research/social/business/entrepreneurial/education activities abroad.
CLO 2. Able to demonstrate the importance of ethics in social, economic,

and cultural environments.
CLO 3. Able to demonstrate critical thinking skills in managing

research/society/business/entrepreneurship/education abroad according to
the culture of the local community.
CLO 4. Able to demonstrate confidence in research/society/initiating

business/industrial business//education abroad, disseminating research
results/action research/promoting business products/services/portfolios,
making decisions and the importance of the activities to other parties.
CLO 5. Able to be responsible for the choice of doing research / community

/ business / entrepreneurship / cross-cultural, risk and success obtained.
Content 1. Determination of research topics in accordance with research activities
at the targeted institution.
2. Making research plans according to topics.
3. Research preparation.
4. Research implementation.
5. Compiling and analyzing research data.
6. Presentation of research results.
7. Making research reports.
8. Evaluating research internship results.

examination  Draft of research proposal
Final score : Assignment (40%) + draft of research proposal (60%).

319
Module Handbook
Business Initiation
Module Name: Business Initiation

-
module:
Bachelor Programme
Elective Odd
in Biology
Contact hours per

week
Lectures - -
assignment &
- -
self-study)
this course

ECTS
14.17 - 226.7 h 7.5

learning outcomes
320

and safety.

applications.

CLO 1. Able to gain work experience in a unit either at home country or

overseas in the context of business initiation related to biological
sciences.
Content The form of business initiation is an internship by carrying out activities in

accordance with the job description given by the supervisor where the
student is doing the internship.
After starting with observation activities through Internship, the students

are given a problem (mini project) related to business initiation to find a
solution with a scientific approach related to biological sciences (problem-
based learning).
The output of this mini project is that one of them can be used as a
preliminary study for the final project (thesis) which in the end can be used
to prepare a thesis proposal.
After completing this research internship, students prepare a written

internship report and can proceed to become a thesis proposal.

321
Module Handbook
Community Development
Module Name: Community Development

-
module:
Bachelor Programme
Elective Odd
in Biology
Contact hours per

week
Lectures - -
assignment &
- -
self-study)
this course

ECTS
14.17 - 226.7 h 7.5

learning outcomes
322

and safety.

applications.

CLO 1. Able to gain work experience in a unit either at home country or

overseas in the context of business initiation related to biological
sciences.
Content The form of community development is an internship by carrying out

activities in accordance with the job description given by the supervisor
where the student is doing the internship.

are given a problem (mini project) related to community empowerment to
find a solution with a scientific approach related to biological sciences
(problem-based learning).


323
Module Handbook
Industrial Internship
Module Name: Industrial Internship

-
module:
Bachelor Programme
Elective Odd
in Biology
Contact hours per

week
Lectures - -
assignment &
- -
self-study)
this course

ECTS
14.17 - 226.7 h 7.5

learning outcomes
324

and safety.

applications.

CLO 1. Able to gain professional work experiences in a business

unit/industry either at home country or overseas related to biological
sciences.
Content The form of industrial internship is an internship by carrying out activities in
accordance with the job description given by the supervisor where the
student is doing the internship.

are given a problem (mini project) related to community empowerment to
find a solution with a scientific approach related to biological sciences
(problem-based learning).


325
Module Handbook
Research Internship Abroad
Module Name: Research Internship Abroad

-
module:
Bachelor Programme
Elective Odd
in Biology
Contact hours per

week
Lectures - -
assignment &
- -
self-study)
this course

ECTS
14.17 - 226.7 h 7.5

learning outcomes
326

and safety.

applications.

CLO 1. Able to gain experience in college, doing research or community

service related to biological sciences in overseas research institutions.
Content 1. Determining the topic of lectures/research/community service in

accordance with research activities at the targeted institution.
2. Making plans for lectures/research/community service according to
the topic.
3. Preparation of lectures/research/community service.
4. Conducting lectures/research/community service.
5. Report/ Presentation of lectures/research/community service results.
6. Evaluation of research internship results.


327
Module Handbook
Research Management
Module Name: Research Management

-
module:
Bachelor Programme
Elective Odd
in Biology
Contact hours per

week
Lectures - -
assignment &
- -
self-study)
this course

ECTS
8.5 - 136 h 4.5

learning outcomes
328

and safety.

applications.
CLO 1. Able to gain experience in managing a research activity with a

specific topic related to the biological sciences.
Content 1. Making a schedule of research activities.
2. Recording research activities in a logbook.
3. Managing research implementation time according to schedule.
4. Carrying out research according to plan.
5. Evaluating research results and outputs according to targets.


329
Module Handbook
Business Management
Module Name: Business Management

-
module:
Bachelor Programme
Elective Odd
in Biology
Contact hours per

week
Lectures - -
assignment &
- -
self-study)
this course

ECTS
8.5 - 136 h 4.5

learning outcomes
330

and safety.

applications.
CLO 1. Able to gain experience in managing an entrepreneurial activity

with a specific topic related to the biological sciences.
Content 1. Making a schedule for entrepreneurial activities.
2. Recording activities in a logbook.
3. Managing implementation time according to schedule.
4. Implementing entrepreneurial activities according to plan.
5. Evaluating entrepreneurial results and outputs according to targets


331
Module Handbook
Community Development Appraisal
Module Name: Community Development Appraisal

-
module:
Bachelor Programme
Elective Odd
in Biology
Contact hours per

week
Lectures - -
assignment &
- -
self-study)
this course

ECTS
8.5 - 136 h 4.5

learning outcomes
332

and safety.

applications.
CLO 1. Able to gain experience in analyzing and solving problems in the

context of community empowerment with certain topics related to the
biological sciences.
Content 1. Making a schedule for community development activities.
4. Implementing community development activities according to plan.
5. Evaluating entrepreneurial results and outputs according to targets.


333
Module Handbook
Research and Development
Module Name: Research and Development
-
module:
Bachelor Programme
Elective Odd
in Biology
Contact hours per

week
Lectures - -
assignment &
- -
self-study)
this course

ECTS
8.5 - 136 h 4.5

learning outcomes
334

and safety.

applications.
CLO 1. Able to gain experience in conducting research and development in

the context of industrial work internships with certain topics related to
biological sciences.
Content 1. Making a schedule for research and development activities.
4. Implementing research and development activities according to plan.
5. Evaluating results and outputs according to targets.


335
Module Handbook
Scientific Communication
Module Name: Scientific Communication
-
module:
Bachelor Programme
Elective Odd
in Biology
Contact hours per

week
Lectures - -
assignment &
- -
self-study)
this course

ECTS
8.5 - 136 h 4.5

learning outcomes
336

and safety.

applications.
CLO 1. Able to communicate effectively in all scientific activities carried out

during the internship not only with the staffs of the research institution but
also with both supervisors.
Content 1. Consultation and discussion of research activity schedule.
2. Presentation of research internship plan proposal.
3. Presentation of research progress report I.
4. Presentation of research progress report II.
5. Presentation of research results.
6. Consultation and discussion of research report.


337
Module Handbook
Business Communication
Module Name: Business Communication
-
module:
Bachelor Programme
Elective Odd
in Biology
Contact hours per

week
Lectures - -
assignment &
- -
self-study)
this course

ECTS
8.5 - 136 h 4.5

learning outcomes
338

and safety.

applications.
CLO 1. Able to communicate effectively in all business activities carried out

during the internship not only with the staffs of the institution but also with
both supervisors.
Content 1. Consultation and discussion of business activity schedule.
2. Presentation of business plan.
3. Presentation of business progress report I.
4. Presentation of business progress report II.
5. Presentation of business results.
6. Consultation and discussion of business report.


339
Module Handbook
Community Communication
Module Name: Community Communication
-
module:
Bachelor Programme
Elective Odd
in Biology
Contact hours per

week
Lectures - -
assignment &
- -
self-study)
this course

ECTS
8.5 - 136 h 4.5

learning outcomes
340

and safety.

applications.
CLO 1. Able to communicate effectively in all community development

activities carried out during the internship not only with the community but
also with both supervisors.
Content 1. Consultation and discussion of community development activity
schedule.
2. Presentation of community development plan.
3. Presentation of community development progress report I.
4. Presentation of community development progress report II.
5. Presentation of community development results.
6. Consultation and discussion of community development report.


341

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Updated on 30 October 2021

Bachelor Programme in Biology

TABLE OF CONTENT ................................................................................................................... i

ILO 7. Have a capacity for teamwork with respecting biodiversity.

Module Name: General Biology

Contact hours per

Contact hours Private/self- Semester

ILO 6. Able to demonstrate good communication skills in delivering

Course learning outcomes (CLO) after completing this module:

CLO 3. Skilled in using appropriate methods to solve simple problems in

CLO 4. Able to communicate in Indonesian and English (ILO 6).

Class score (CS): Paper project (10%), quiz (10%), presentation

Module Name: Basic Physics

Contact hours per

Contact hours Private/self- Semester

Course learning outcomes (CLO) after completing this module:

Content 1. Basic concepts of physics

Module Name: Practice in Basic Physics

Contact hours per

Contact hours Private/self- Semester

Module Name: Basic Chemistry

Contact hours per

Contact hours Private/self- Semester

Course learning outcomes (CLO) after completing this module:

Content 1. Introduction: Chemistry in life

Contact hours per

Contact hours Private/self- Semester

Content 1. Introduction of chemical tools and materials

Study and examination Form of examination in laboratory practice:

Module Name: Basic Biocomputation

Contact hours per

Contact hours Private/self- Semester

ILO 3. Able to understand the methodology of biological science and

ILO 4. Able to work independently in the laboratory and the field in

CLO 1. Able to explain and understand the application of computational

CLO 2. Able to explain and understand simple programming principles in

CLO 3. Able to explain and perform various computer applications in the

Module Name: Civilization

Contact hours per

Contact hours Private/self- Semester

Course learning outcomes (CLO) after completing this module:

CLO1. Able to understand the nature of civic education in developing the

CLO 3. Able to understand the supremacy of the constitution and the

CLO 4. Able to understand, identify, and maintain national identity from

CLO 5. Able to build awareness and believe in the importance of

CLO 6. Able to examine Pancasila as the philosophical foundation of

CLO 7. Able to understand the concept of geopolitics and geopolitics in

Contact hours per

Contact hours Private/self- Semester

CLO 1. Able to remind the basics of English grammar.

CLO 2. Able to understand English reading which is related to the

CLO 3. Able to write several types of paragraphs and present academic

Module Name: Method of Bioresearch and Scientific Writing I

Contact hours per

Contact hours Private/self- Semester

ILO 6. Able to demonstrate good communication skills in delivering

Course learning outcomes (CLO) after completing this module:

CLO 1. Mastering theoretical concepts or their applications in the scope of

CLO 2. Able to design and present alternatives.

CLO 3. Mastering instruments related to the field of biological studies they