Sci 313.313L - Genetics-Learning Material - Vol. I
Sci 313.313L - Genetics-Learning Material - Vol. I
Sci 313.313L - Genetics-Learning Material - Vol. I
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DISCLAIMER
This learning material is used in compliance with the flexible teaching and learning
approach espoused by CHED in response to the pandemic that has globally affected
educational institutions. Authors and publishers of the contents are well
acknowledged. As such, the College and its faculty do not claim ownership of all
sourced information. This learning material will solely be sued for instructional
purposes not for commercialization.
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TABLE OF CONTENTS
Page number
Title page 1
Disclaimer 2
Table of contents 3
Introduction and Course guide 4
Study guide and house rules 7
References
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INTRODUCTION AND COURSE GUIDE
Sci 313/313L Genetics is a 4 unit course (3 units lecture and 1 unit laboratory) that
deals with the principles of heredity and variation, its application in plant and animal
breeding together with the problems involved in it. It also includes biometrical
treatment of qualitative and quantitative characters of both plants and animals.
As for the laboratory session, this course deals with exercises on chromosomal basis
of inheritance, structure of genetic material and Mendelian and Non-Mendelian
inheritance.
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MIDTERM EXAMINATION 1.5 hours
Course Requirements
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Evaluation
Students will be graded based on the following (Per Board Resolution No.3,4 or 4s.
2016
Distribution of grades
Quizzes (10%): Short and long quizzes to be given on selected topics or units
Home works/problem set (20%): Assignments/problem sets in selected
topics in the module should be submitted on or before the deadline.
Performance/skills-based psychomotor (40%): Consists of research
works, case studies, article reviews, etc.
Midterm exam (30%)
Course Policies
A. Students with reasonable absences from the class will be given consideration for
the missed quizzes/examinations upon presentation of duly signed excuse letter.
B. Students who incurred more than 20% of the required number of hours shall be
dropped from the rolls.
C. Submission of projects shall be on or before the due date agreed upon by the
students and the faculty. Late submission will earn a grade of 3.0.
D. Cheating and plagiarism are strictly prohibited. Students caught doing these acts
shall be dealt with in accordance with the provisions in the Student Handbook.
E. Cell phone use during classes is strictly prohibited.
F. Wearing of appropriate school uniform and ID shall be strictly implemented
Academic Honesty
Academic dishonesty will not be tolerated. As a registered student in this course and
at the Catanduanes State University, you are expected to be honest in all academic
works and must adhere to the commitment of academic honesty. Failure to comply
with this commitment may result in disciplinary action. If you are caught plagiarizing
or cheating on exams or assignments, an appropriate disciplinary action will be
imposed.
Grade Dispute Policy: Students have an allowance of 48 hours or two days after the
grades are posted to discuss concerns about their grades on assignments and exams. Please
contact your professor within the allowance given; otherwise, all grades are undisputedly
final.
Make-up Policy: Make-up work will be given for students who miss or fail to submit
requirements on the pre-determined date due to unavoidable circumstances (i.e. poor
internet connection, health problems, LGU imposed lockdown, etc.). Documentation
(doctor’s note, etc.) is required to substantiate your missed submissions.
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STUDY GUIDES AND HOUSE RULES
The key to successfully finish this course lies in your hands. This module was prepared
for you to learn diligently, intelligently, and independently. As you advance in your
course, the key concepts that you will learn in this subject is very important. Therefore,
meeting the content and performance standards of this course by accomplishing the
given activities are necessary. At the end of this module, you will also be able to learn
other invaluable learning skills which you will be very proud of as a responsible
independent learner. The following guides and rules will help you further to be on
track.
1. Secure a copy of this module.
2. Schedule and manage your time to read and understand every part of the module.
Read it over and over until you understand the concepts discussed.
3. Study on how you can manage to do the activities on this course in consideration
of your other modules from other courses. Be very conscious of your study
schedule.
4. Answer all the assignments/research work and exercises in this module. This will
be submitted on or before the midterm exam.
5. At the end of each unit, there is a Unit quiz which you are required to answer and
submit on a specified date. Late submissions will not be accepted.
6. DO NOT PROCRASTINATE. Remember, it is not others who will be short-changed
if you will not do your work on time.
7. Before you start doing your tasks, read and understand the assessment tools
provided. DO NOT SETTLE WITH LOW STANDARDS, target the highest standards
in doing your assigned tasks. I KNOW YOU CAN!
8. You are highly encouraged to browse and read different materials even prior to
doing your assigned tasks.
9. Due to problems with erratic internet connection, online courses will be
scheduled asynchronously. A group chat will also be created which will be utilized
to post announcements, provide immediate feedback, and track your progress.
10. Laboratory activities will be scheduled.
11. All activities, assignments, exercises, as well as quizzes should be submitted on or
before midterm examination or on the agreed deadline.
12. DO NOT PLAGIARIZE AND DO NOT PATCH WRITE. Patch writing is also a form of
plagiarism. It refers to an act of making small changes and substitutions to copied
source materials (Merriam-Webster, 2020).
13. Follow the schedule of course activities. Always remind yourself of deadlines.
Read in advance and anticipate possible conflicts between your personal schedule
and the course schedule, and make appropriate adjustments. Inform your course
professor for any “unavoidable delays” or other concerns.
14. Lastly, you are the LEARNER. Hence, you must do the module ON YOUR OWN.
Your family members at home and your friends may support you, but the
activities must be done by you. As a student of Catanduanes State University, you
must always demonstrate our core values of respect, integrity, social responsibility,
excellence and commitment.
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Icons used in this learning guide
Icons appear in the left margin to draw your attention to things that occur on a regular
basis. Here’s what each icon means:
This icon gives the suggested time to be spent for each unit.
This icon contains the unit quiz that needs to be answered and
submitted.
Since face to face classes are not allowed this time of pandemic, you can reach me
through the following platforms if you have questions or you need clarifications for the
assigned tasks:
Email: [email protected]
Facebook messenger: @Karmela Idanan Del Rosario
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UNIT I: THE SCIENCE OF GENETICS
LEARNING OBJECTIVES
1. Describe the science of Genetics and its importance as a discipline.
2. Discuss the scope, fields and applications of genetics.
3. Discuss the role of genetics in plant and animal improvement.
William Harvey (1578-1657), an English anatomist, was credited for his earlier
statement of the theory of epigenesis, that an organism is derived from substances
present in the egg that differentiate into adult structures during embryonic
development. Epigenesis holds that structures such as body organs are not initially
present in the early embryo, but instead are formed de novo (anew).
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Matthias Schleiden and Theodore Schwann in 1830, proposed the Cell Theory, stating
that all organisms are composed of basic units called cells, which are derived from
similar preexisting structures.
Another influential notion prevalent in the nineteenth century, that animal and plant
groups have remained unchanged in form since the moment of their appearance on
Earth. This doctrine was embraced by those who believed in special creation, including
the Swedish physician and plant taxonomist, Carolus Linnaeus (1707–1778), who is
better known for devising the binomial system of species classification.
In 1850, Gregor Mendel, provided the foundation for interpreting Darwin’s proposal.
It gradually became clear that inherited variation is dependent on genetic information
residing in genes contained in chromosomes.
Since then, the science of genetics has progressed from Mendel to DNA in less than a
century (shown in the timeline below).
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Where it all began?
The true starting point of our understanding of genetics began in a monastery garden
in central Europe in the 1860s, where Gregor Mendel, an Augustinian monk, conducted
a decade-long series of experiments using pea plants.
Mendel’s work was published in 1866, but was largely unknown until it was partially
duplicated and cited in papers by Carl Correns and others around 1900. Having been
confirmed by others, Mendel’s findings became recognized as basis for explaining the
transmission of traits in pea plants and all other higher organisms. Mendel’s work
forms the foundation for Genetics, a branch of biology concerned with the study of
heredity and variation.
Since then, several advances in the science of genetics has unfold to include but not
limited to mutation, gene cloning and recombination (genetically altered plants and
animals), understanding expression of genes, recombinant DNA technology, and
biotechnology. In recent years, the human chromosomes have been mapped and the
location of some genes whose mutant forms causing hereditary diseases were known
(see figure below). This discovery has led to the advances in medicine and treatment
of human diseases.
With the discovery of modern molecular methods in studying DNA and other
hereditary materials, several advances in genetics has progressed. We will discuss
more of these in the succeeding units of this module.
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UNIT II: CHROMOSOMES: BASIS OF HEREDITY
LEARNING OBJECTIVES
1. Familiarize with the structure of the cell and its organelles as well as
chromosome structure.
2. Compare the stages of mitosis and meiosis.
3. Describe the consequences of mitosis and meiosis.
4. Illustrate the stages and life cycles of meiosis.
SUGGESTED TIME FRAME: Seven (7) hours and thirty (30) minutes
Introduction
Genetic continuity between generations of cells and between generations of sexually
reproducing organisms is maintained through the processes of mitosis and meiosis,
respectively. Diploid eukaryotic cells contain their genetic information in pairs of
homologous chromosomes, with one member of each pair being derived from the
maternal parent and one from the paternal parent. Mitosis provides a mechanism by
which chromosomes, having been duplicated, are distributed into progeny cells during
cell reproduction. Mitosis converts a diploid cell into two diploid daughter cells. The
process of meiosis distributes one member of each homologous pair of chromosomes
into each gamete or spore, thus reducing the diploid chromosome number to the
haploid chromosome number. Meiosis generates genetic variability by distributing
various combinations of maternal and paternal members of each homologous pair of
chromosomes into gametes or spores. During the stages of mitosis and meiosis, the
genetic material is condensed into discrete structures called chromosomes.
Cell Structure
Early knowledge about the structure of the cell was limited to what was seen using the
light microscope (before 1940). However, around 1940, the transmission electron
microscope was discovered, and by 1950, many details of cell ultrastructure had
emerged. Under electron microscope, cells were seen as highly varied, highly
organized structures whose form and function are dependent on specific gene
expression by each cell type. Many cell components such as the nucleolus, ribosomes,
and centriole, are involved directly or indirectly with genetic processes. Other
components such as mitochondria and chloroplasts also contain their own unique
genetic information (see figure of a generalized animal cell below).
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Generalized structure of animal cell showing cellular components
Cellular components
All cells are surrounded by a plasma membrane, an outer covering that defines the
cell boundary and delimits the cell from its immediate external environment. This
membrane is not passive but instead actively controls the movement of materials into
and out of the cell. In addition to this membrane, plant cells have an outer covering
called the cell wall whose major component is a polysaccharide called cellulose.
Many, if not most, animal cells have a covering over the plasma membrane, referred to
as the glycocalyx or cell coat. Consisting of glycoproteins and polysaccharides, this
covering has a chemical composition that differs from comparable structures in either
plants or bacteria. The glycocalyx, among other functions, provides biochemical
identity at the surface of cells, and the components of the coat that establish cellular
identity are under genetic control. For example, various cell-identity markers that you
may have heard of—the AB, Rh, and MN antigens—are found on the surface of red
blood cells, among other cell types. On the surface of other cells, histocompatibility
antigens, which elicit an immune response during tissue and organ transplants, are
present. Various receptor molecules are also found on the surfaces of cells. These
molecules act as recognition sites that transfer specific chemical signals across the cell
membrane into the cell.
Living organisms are categorized into two major groups depending on whether or not
their cells contain a nucleus. The presence of a nucleus and other membranous
organelles is the defining characteristic of eukaryotic organisms. The nucleus in
eukaryotic cells is a membrane-bound structure that houses the genetic material, DNA,
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which is complexed with an array of acidic and basic proteins into thin fibers. During
non-divisional phases of the cell cycle, the fibers are uncoiled and dispersed into
chromatin. During mitosis and meiosis, chromatin fibers coil and condense into
chromosomes. Also present in the nucleus is the nucleolus, an amorphous component
where ribosomal RNA (rRNA) is synthesized and where the initial stages of ribosomal
assembly occur. The portions of DNA that encode rRNA are collectively referred to as
the nucleolus organizer region, or the NOR.
Prokaryotic organisms, of which there are two major groups, lack a nuclear envelope
and membranous organelles. For the purpose of our brief discussion here, we will
consider the eubacteria, the other group being the more ancient bacteria referred to
as archaea. In eubacteria, such as Escherichia coli, the genetic material is present as a
long, circular DNA molecule that is compacted into an unenclosed region called the
nucleoid. Part of the DNA may be attached to the cell membrane, but in general the
nucleoid extends through a large part of the cell. Although the DNA is compacted, it
does not undergo the extensive coiling characteristic of the stages of mitosis, during
which the chromosomes of eukaryotes become visible nor is the DNA associated as
extensively with proteins as is eukaryotic DNA.
Prokaryotic cells do not have a distinct nucleolus but do contain genes that specify
rRNA molecules. The remainder of the eukaryotic cell within the plasma membrane,
excluding the nucleus, is referred to as cytoplasm and includes a variety of
extranuclear cellular organelles. In the cytoplasm, a non-particulate, colloidal material
referred to as the cytosol surrounds and encompasses the cellular organelles. The
cytoplasm also includes an extensive system of tubules and filaments, comprising the
cytoskeleton, which provides a lattice of support structures within the cell. Consisting
primarily of microtubules, which are made of the protein tubulin, and microfilaments,
which derive from the protein actin, this structural framework maintains cell shape,
facilitates cell mobility, and anchors the various organelles.
Mitochondria are found in most eukaryotes, including both animal and plant cells,
and are the sites of the oxidative phases of cell respiration. These chemical reactions
generate large amounts of the energy-rich molecule adenosine triphosphate (ATP).
Chloroplasts, which are found in plants, algae, and some protozoans, are associated
with photosynthesis, the major energy-trapping process on Earth. Both mitochondria
and chloroplasts contain DNA in a form distinct from that found in the nucleus. They
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are able to duplicate themselves and transcribe and translate their own genetic
information. It is interesting to note that the genetic machinery of mitochondria and
chloroplasts closely resembles that of prokaryotic cells. This and other observations
have led to the proposal that these organelles were once primitive free-living
organisms that established symbiotic relationships with primitive eukaryotic cells.
This theory concerning the evolutionary origin of these organelles is called the
endosymbiont hypothesis. Animal cells and some plant cells also contain a pair of
complex structures called centrioles. These cytoplasmic bodies, located in a
specialized region called the centrosome, are associated with the organization of
spindle fibers that function in mitosis and meiosis. In some organisms, the centriole is
derived from another structure, the basal body, which is associated with the formation
of cilia and flagella (hair-like and whip-like structures for propelling cells or moving
materials). Over the years, many reports have suggested that centrioles and basal
bodies contain DNA, which could be involved in the replication of these structures.
This idea is still being investigated. The organization of spindle fibers by the centrioles
occurs during the early phases of mitosis and meiosis. These fibers play an important
role in the movement of chromosomes as they separate during cell division. They are
composed of arrays of microtubules consisting of polymers of the protein tubulin.
Chromosome structure
Genetic materials are organized into structures called chromosomes that reside in the
cell nucleus. Each chromosome contains a single strand of DNA. Chromosomes consist
of DNA, macromolecule coding genetic information, and specific proteins called
histones.
Chromosomes are most easily visualized during mitosis since chromosomes condense
just before cell division. When they are examined carefully, distinctive lengths and
shapes are apparent. Each chromosome contains a constricted region called the
centromere, whose location establishes the general appearance of each chromosome.
The regions of a condensed chromosome that stain more darkly than other regions are
called heterochromatin. Heterochromatin gives stained chromosomes a banded
appearance with alternating dark (heterochromatin) and light bands. These bands are
useful as markers for stock identification.
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Diagram of chromosomes 17-21 of Chinook salmon showing the location and relative
size of stained bands called Q bands. Banding patterns may vary between individuals
and between populations (Kapuscinski & Miller, 2007)
Chromosomes also change their structure depending on the phase of mitosis.
Chromosomes reach maximum compactness at the stage of mitotic metaphase, when
they are located at equatorial plane of division forming the metaphase plate. The
counting of chromosomes and investigation of their structure are performed by
analysis of metaphase plates. Metaphase chromosomes consist of two chromatids
joined by a centromere, a special structure, to which the mitotic spindle fibers attach.
Parts of chromosomes separated by the centromere are named chromosome arms.
Depending on the location of centromere the following types of chromosomes may be
distinguished.
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The shorter arm, by convention, is shown above the centromere and is called the p
arm (p, for petite). The longer arm is shown below the centromere and is called the q
arm (q because it is the next letter in the alphabet).
Centromere locations and chromosome designations that are based on them. Note
that the shape of the chromosome during anaphase is determined by the position of
the centromere during metaphase (Source: Klug et al., 2012)
The number of chromosomes in somatic cells (cells that are not egg or sperm) differs
widely among species but is relatively constant among individuals of the same species.
The number of chromosomes in a cell is normally an even number (2n) because both
parents contribute an equal number of chromosomes to their progeny. The number of
chromosomes contributed by each parent through either the egg or sperm is called the
haploid number and is denoted by n. Normal individuals of most species are said to
be diploid because they have 2n chromosomes in each somatic cell. Polyploidy
(duplication of entire chromosomes sets so that they are 4n, 8n, etc.).
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healing and other forms of cell replacement in certain tissues. For example, the
epidermal cells of the skin and the intestinal lining of humans are continuously
sloughed off and replaced. Cell division also results in the continuous production of
reticulocytes that eventually shed their nuclei and replenish the supply of red blood
cells in vertebrates. In abnormal situations, somatic cells may lose control of cell
division, and form a tumor.
The genetic material is partitioned into daughter cells during nuclear division, or
karyokinesis. This process is quite complex and requires great precision. The
chromosomes must first be exactly replicated and then accurately partitioned. The end
result is the production of two daughter nuclei, each with a chromosome composition
identical to that of the parent cell.
Karyokinesis is followed by cytoplasmic division, or cytokinesis. This less complex
process requires a mechanism that partitions the volume into two parts, then encloses
each new cell in a distinct plasma membrane. As the cytoplasm is reconstituted,
organelles either replicate themselves, arise from existing membrane structures, or
are synthesized de novo (anew) in each cell.
Following cell division, the initial size of each new daughter cell is approximately one-
half the size of the parent cell. However, the nucleus of each new cell is not appreciably
smaller than the nucleus of the original cell. Quantitative measurements of DNA
confirm that there is an amount of genetic material in the daughter nuclei equivalent
to that in the parent cell.
The Cell Cycle
Many cells undergo a continuous alternation between division and non-division. The
events that occur from the completion of one division until the completion of the next
division constitute the cell cycle (see figure below).
Interphase is the initial stage of the cell cycle. It is the interval between divisions. It
was once thought that the biochemical activity during interphase was devoted solely
to the cell’s growth and its normal function. However, there is another biochemical
step critical to the ensuing mitosis that occurs during interphase - the replication of
the DNA of each chromosome. This period, during which DNA is synthesized, occurs
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before the cell enters mitosis and is called the S phase. The initiation and completion
of synthesis can be detected by monitoring the incorporation of radioactive precursors
into DNA. Investigations of this nature demonstrate two periods during interphase
when no DNA synthesis occurs, one before and one after the S phase. These are
designated G1 (gap I) and G2 (gap II), respectively. During both of these intervals, as
well as during S, intensive metabolic activity, cell growth, and cell differentiation are
evident. By the end of G2, the volume of the cell has roughly doubled, DNA has been
replicated, and mitosis (M) is initiated. Following mitosis, continuously dividing cells
then repeat this cycle (G1, S, G2, M) over and over, as shown in the cell cycle figure
above.
Stages of mitosis
The following figure depicts the stages of mitosis in animal cell with a diploid number
of 4.
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Prophase
The centrioles migrate to establish poles at opposite ends of the cell. After migrating,
the centrioles are responsible for organizing cytoplasmic microtubules into the spindle
fibers that run between these poles, creating an axis along which chromosomal
separation occurs. Interestingly, the cells of most plants (there are a few exceptions),
fungi, and certain algae seem to lack centrioles. Spindle fibers are nevertheless
apparent during mitosis. Therefore, centrioles are not universally responsible for the
organization of spindle fibers.
As the centrioles migrate, the nuclear envelope begins to break down and gradually
disappears. In a similar fashion, the nucleolus disintegrates within the nucleus. While
these events are taking place, the diffuse chromatin fibers have begun to condense,
until distinct threadlike structures, the chromosomes, become visible. It becomes
apparent near the end of prophase that each chromosome is actually a double
structure split longitudinally except at a single point of constriction, the centromere.
The two parts of each chromosome are called sister chromatids because the DNA
contained in each of them is genetically identical, having formed from a single
replicative event. Sister chromatids are held together by a multi-subunit protein
complex called cohesin. This molecular complex is originally formed between them
during the S phase of the cell cycle when the DNA of each chromosome is replicated.
Thus, even though we cannot see chromatids in interphase because the chromatin is
uncoiled and dispersed in the nucleus, the chromosomes are already double
structures, which becomes apparent in late prophase. In humans, with a diploid
number of 46, a cytological preparation of late prophase reveals 46 chromosomes
randomly distributed in the area formerly occupied by the nucleus.
The distinguishing event of the two ensuing stages is the migration of every
chromosome, led by its centromeric region, to the equatorial plane. The equatorial
plane, also referred to as the metaphase plate, is the midline region of the cell, a plane
that lies perpendicular to the axis established by the spindle fibers. In some
descriptions, the term prometaphase refers to the period of chromosome movement,
and the term metaphase is applied strictly to the chromosome configuration following
migration. Migration is made possible by the binding of spindle fibers to the
chromosome’s kinetochore, an assembly of multilayered plates of proteins associated
with the centromere. This structure forms on opposite sides of each paired
centromere, in intimate association with the two sister chromatids. Once properly
attached to the spindle fibers, cohesin is degraded by an enzyme, appropriately named
separase, and the sister chromatid arms disjoin, except at the centromere region. A
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unique protein family called shugoshin (from the Japanese meaning guardian spirit)
protects cohesin from being degraded by separase at the centromeric regions.
Anaphase
Events critical to chromosome distribution during mitosis occur during anaphase, the
shortest stage of mitosis. During this phase, sister chromatids of each chromosome,
held together only at their centromere regions, disjoin (separate) from one another—
an event described as disjunction—and are pulled to opposite ends of the cell. For
complete disjunction to occur: (1) shugoshin must be degraded, reversing its
protective role; (2) the cohesin complex holding the centromere region of each sister
chromosome is then cleaved by separase; and (3) sister chromatids of each
chromosome are pulled toward the opposite poles of the cell. As these events proceed,
each migrating chromatid is now referred to as a daughter chromosome.
The location of the centromere determines the shape of the chromosome during
separation. The steps that occur during anaphase are critical in providing each
subsequent daughter cell with an identical set of chromosomes. In human cells, there
would now be 46 chromosomes at each pole, one from each original sister pair.
Telophase
Telophase is the final stage of mitosis. At its beginning, two complete sets of
chromosomes are present, one set at each pole. The most significant event of this stage
is cytokinesis, the division or partitioning of the cytoplasm. Cytokinesis is essential if
two new cells are to be produced from one cell. The mechanism of cytokinesis differs
greatly in plant and animal cells, but the end result is the same: two new cells are
produced. In plant cells, a cell plate is synthesized and laid down across the region of
the metaphase plate. Animal cells, however, undergo a constriction of the cytoplasm,
much as a loop of string might be tightened around the middle of a balloon.
It is not surprising that the process of cytokinesis varies in different organisms. Plant
cells, which are more regularly shaped and structurally rigid, require a mechanism for
depositing new cell wall material around the plasma membrane. The cell plate laid
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down during telophase becomes a structure called the middle lamella. Subsequently,
the primary and secondary layers of the cell wall are deposited between the cell
membrane and middle lamella in each of the resulting daughter cells. In animals,
complete constriction of the cell membrane produces the cell furrow characteristic of
newly divided cells.
Other events necessary for the transition from mitosis to interphase are initiated
during late telophase. They generally constitute a reversal of events that occurred
during prophase. In each new cell, the chromosomes begin to uncoil and become
diffuse chromatin once again, while the nuclear envelope reforms around them, the
spindle fibers disappear, and the nucleolus gradually reforms and becomes visible in
the nucleus during early interphase. At the completion of telophase, the cell enters
interphase.
The cell cycle, culminating in mitosis, is fundamentally the same in all eukaryotic
organisms. This similarity in many diverse organisms suggests that the cell cycle is
governed by a genetically regulated program that has been conserved throughout
evolution. Because disruption of this regulation may underlie the uncontrolled cell
division characterizing malignancy, interest in how genes regulate the cell cycle is
particularly strong.
Vast research efforts over the past 15 years have paid high dividends, and we now have
knowledge of many genes involved in the control of the cell cycle. This work was
recognized by the awarding of the 2001 Nobel Prize in Medicine or Physiology to Lee
Hartwell, Paul Nurse, and Tim Hunt. As with other studies of genetic control over
essential biological processes, investigation has focused on the discovery of mutations
that interrupt the cell cycle and on the effects of those mutations. Many mutations are
now known that exert an effect at one or another stage of the cell cycle. First
discovered in yeast, but now evident in all organisms, including humans, such
mutations were originally designated as cell division cycle (cdc) mutations. The
normal products of many of the mutated genes are enzymes called kinases that can
add phosphates to other proteins. They serve as “master control” molecules
functioning in conjunction with proteins called cyclins. Cyclins bind to these kinases
(creating cyclin-dependent kinases), activating them at appropriate times during the
cell cycle. Activated kinases then phosphorylate other target proteins that regulate the
progress of the cell cycle. The study of cdc mutations has established that the cell cycle
contains at least three major checkpoints, where the processes culminating in normal
mitosis are monitored, or “checked,” by these master control molecules before the next
stage of the cycle commences.
Checkpoints are named according to where in the cell cycle monitoring occurs. The
first of three, the G1/S checkpoint, monitors the size the cell has achieved since its
previous mitosis and also evaluates the condition of the DNA. If the cell has not reached
an adequate size or if the DNA has been damaged, further progress through the cycle
is arrested until these conditions are “corrected.” If both conditions are “normal” at
G1/S, then the cell is allowed to proceed from G1 to the S phase of the cycle. The second
checkpoint is the G2/M checkpoint, where DNA is monitored prior to the start of
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mitosis. If DNA replication is incomplete or any DNA damage is detected and has not
been repaired, the cell cycle is arrested. The final checkpoint occurs during mitosis and
is called the M checkpoint (sometimes referred to as the Spindle Assembly checkpoint).
Here, both the successful formation of the spindle fiber system and the attachment of
spindle fibers to the kinetochores associated with the centromeres are monitored. If
spindle fibers are not properly formed or if attachment is inadequate, mitosis is
arrested.
The process of meiosis, unlike mitosis, reduces the amount of genetic material by one-
half. Whereas in diploids mitosis produces daughter cells with a full diploid
complement, meiosis produces gametes or spores with only one haploid set of
chromosomes. During sexual reproduction, gametes then combine through
fertilization to reconstitute the diploid complement found in parental cells. The figure
below compares the two processes by following two pairs of homologous
chromosomes.
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The events of meiosis must be highly specific since by definition, haploid gametes or
spores contain precisely one member of each homologous pair of chromosomes. If
successfully completed, meiosis ensures genetic continuity from generation to
generation.
The process of sexual reproduction also ensures genetic variety among members of a
species. As you study meiosis, you will see that this process results in gametes that
each contain unique combinations of maternally and paternally derived chromosomes
in their haploid complement. With such a tremendous genetic variation among the
gametes, a huge number of maternal-paternal chromosome combinations are possible
at fertilization. Furthermore, you will see that the meiotic event referred to as crossing
over results in genetic exchange between members of each homologous pair of
chromosomes. This process creates intact chromosomes that are mosaics of the
maternal and paternal homologs from which they arise, further enhancing the
potential genetic variation in gametes and the offspring derived from them. Sexual
reproduction therefore reshuffles the genetic material, producing offspring that often
differ greatly from either parent. Thus, meiosis is the major source of genetic
recombination within species.
In mitosis, each paternally and maternally derived member of any given homologous
pair of chromosomes behaves autonomously during division. By contrast, early in
meiosis, homologous chromosomes form pairs; that is, they synapse (or undergo)
synapsis. Each synapsed structure, initially called a bivalent, eventually gives rise to a
tetrad consisting of four chromatids. The presence of four chromatids demonstrates
that both homologs (making up the bivalent) have, in fact, duplicated. Therefore, to
achieve haploidy, two divisions are necessary.
Like mitosis, meiosis is a continuous process. We assign names to its stages and sub-
stages only to facilitate discussion.
Prophase I: From a genetic standpoint, three events characterize the initial stage,
prophase I (see figure below). First, as in mitosis, chromatin present in interphase
thickens and coils into visible chromosomes. And, as in mitosis, each chromosome is a
double structure, held together by the molecular complex called cohesin. Second,
unlike mitosis, members of each homologous pair of chromosomes pair up,
undergoing synapsis. Third, crossing over occurs between chromatids of synapsed
homologs. Because of the complexity of these genetic events, this stage of meiosis is
divided into five sub-stages: leptonema, zygonema, pachynema, diplonema, and
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diakinesis. As we discuss these sub-stages, be aware that, even though it is not
immediately apparent in the earliest phases of meiosis, the DNA of chromosomes has
been replicated during the prior interphase.
Leptonema: During the leptotene stage, the interphase chromatin material begins to
condense, and the chromosomes, though still extended, become visible. Along each
chromosome are chromomeres, localized condensations that resemble beads on a
string. Evidence suggests that a process called homology search, which precedes and
is essential to the initial pairing of homologs, begins during leptonema.
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Zygonema: The chromosomes continue to shorten and thicken during the zygotene
stage. During the process of homology search, homologous chromosomes undergo
initial alignment with one another. This so-called rough pairing is complete by the end
of zygonema. In yeast, homologs are separated by about 300 nm, and near the end of
zygonema, structures called lateral elements are visible between paired homologs. As
meiosis proceeds, the overall length of the lateral elements along the chromosome
increases, and a more extensive ultrastructural component called the synaptonemal
complex begins to form between the homologs. This complex is believed to be the
vehicle responsible for the pairing of homologs. In some diploid organisms, this
synapsis occurs in a zipper-like fashion, beginning at the ends of chromosomes
attached to the nuclear envelope. It is upon completion of zygonema that the paired
homologs are referred to as bivalents. Although both members of each bivalent have
already replicated their DNA, it is not yet visually apparent that each member is a
double structure. The number of bivalents in each species is equal to the haploid (n)
number.
Pachynema: In the transition from the zygotene to the pachytene stage, the
chromosomes continue to coil and shorten, and further development of the
synaptonemal complex occurs between the two members of each bivalent. This leads
to synapsis, a more intimate pairing. Compared to the rough-pairing characteristic of
zygonema, homologs are now separated by only 100 nm. During pachynema, each
homolog is now evident as a double structure, providing visual evidence of the earlier
replication of the DNA of each chromosome. Thus, each bivalent contains four member
chromatids. As in mitosis, replicates are called sister chromatids, whereas chromatids
from maternal and paternal members of a homologous pair are called non-sister
chromatids. The four-membered structure, also referred to as a tetrad, contains two
pairs of sister chromatids.
Diplonema: During the ensuing diplotene stage, it is even more apparent that each
tetrad consists of two pairs of sister chromatids. Within each tetrad, each pair of sister
chromatids begins to separate. However, one or more areas remain in contact where
chromatids are intertwined. Each such area, called a chiasma (pl. chiasmata), is
thought to represent a point where non-sister chromatids have undergone genetic
exchange through the process referred to above as crossing over. Although the
physical exchange between chromosome areas occurred during the previous
pachytene stage, the result of crossing over is visible only when the duplicated
chromosomes begin to separate. Crossing over is an important source of genetic
variability, and as indicated earlier, new combinations of genetic material are formed
during this process.
Diakinesis: The final stage of prophase I is diakinesis. The chromosomes pull farther
apart, but non-sister chromatids remain loosely associated at the chiasmata. As
separation proceeds, the chiasmata move toward the ends of the tetrad. This process
of terminalization begins in late diplonema and is completed during diakinesis. During
this final substage, the nucleolus and nuclear envelope break down, and the two
centromeres of each tetrad attach to the recently formed spindle fibers. By the
completion of prophase I, the centromeres of each tetrad structure are present on the
metaphase plate of the cell.
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Metaphase I, Anaphase I and Telophase I
After meiotic prophase I, stages similar to those of mitosis occur. In the first division,
metaphase I, the chromosomes have maximally shortened and thickened. The
terminal chiasmata of each tetrad are visible and appear to be the major factor holding
the non-sister chromatids together. Each tetrad interacts with spindle fibers,
facilitating its movement to the metaphase plate. The alignment of each tetrad prior to
the first anaphase is random: Half of the tetrad (one of the dyads) will subsequently be
pulled to one or the other pole, and the other half moves to the opposite pole. During
the stages of meiosis I, a single centromeric region holds each pair of sister chromatids
together. It appears as a single unit, and a kinetechore forms around each one. As in
our discussion of mitosis, cohesin plays the major role in keeping sister chromatids
together. At anaphase I, cohesin is degraded between sister chromatids, except at the
centromere region, which, as in mitosis, is protected by a shugoshin complex. Then,
one-half of each tetrad (a dyad) is pulled toward each pole of the dividing cell. This
separation process is the physical basis of disjunction, the separation of homologous
chromosomes from one another. Occasionally, errors in meiosis occur and separation
is not achieved. The term nondisjunction describes such an error. At the completion of
the normal anaphase I, a series of dyads equal to the haploid number is present at each
pole. If crossing over had not occurred in the first meiotic prophase, each dyad at each
pole would consist solely of either paternal or maternal chromatids. However, the
exchanges produced by crossing over create mosaic chromatids of paternal and
maternal origin. In many organisms, telophase I reveals a nuclear membrane forming
around the dyads. In this case, the nucleus next enters into a short interphase period.
If interphase occurs, the chromosomes do not replicate because they already consist
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of two chromatids. In other organisms, the cells go directly from anaphase I to meiosis
II. In general, meiotic telophase is much shorter than the corresponding stage in
mitosis.
During prophase II, each dyad is composed of one pair of sister chromatids attached
by the common centromeric region. During metaphase II, the centromeres are
positioned on the equatorial plate. When the shugoshin complex is degraded, the
centromeres separate, anaphase II is initiated, and the sister chromatids of each dyad
are pulled to opposite poles. Because the number of dyads is equal to the haploid
number, telophase II reveals one member of each pair of homologous chromosomes
present at each pole. Each chromosome is now a monad. Following cytokinesis in
telophase II, four haploid gametes may result from a single meiotic event. At the
conclusion of meiosis II, not only has the haploid state been achieved, but if crossing
over has occurred, each monad contains a combination of maternal and paternal
genetic information. As a result, the offspring produced by any gamete will receive a
mixture of genetic information originally present in his or her grandparents.
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Formation of gametes
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Oogenesis
The development of female sex cells begins with mitotic divisions of oogonia. As a
result, their number significantly increases. In interphase before meiosis, the
replication of DNA occurs. Each chromosome reduplicates with formation of two sister
chromatids. Female sex cells coming into meiosis are named oocytes. Until completion
of the first meiotic division they are referred as primary oocytes. The process of oocyte
development in fish is divided into four basic periods:
A. Duplication phase - The ovary and oogonia develop from primordial germ cells,
which are endodermal in origin. The reserve oogonia undergo repeated mitotic
divisions (remaining diploid), and are no longer oogonia after mitosis stops—
this is the starting point for oocytes.
B. Primary growth phase - The secondary oocyte undergoes a second meiotic
division resulting in a mature ovum and another polar body. The first polar
body may divide into two polar bodies (i.e., results in three polar bodies and
one ovum), and the polar bodies are eventually resorbed.
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Nuclear transformations in oocytes during maturation period
Follicle development, yolk vesicle formation, vitellogenesis, and envelope formation
are occurring during the maturation phase.
C. Follicle development - This refers to the structure formed surrounding the
developing oocytes, which is formed by two layers of cells that are the outside
theca cells and the inside follicle cells (also called the glandular granulosa).
D. Yolk vesicle formation - The formation of yolk vesicles—a misnomer because
they are not true yolk, but instead, they contain polysaccharides; they are also
known as cortical alveoli. Generally, cortical alveoli are found around the
periphery of the oocyte.
E. Vitellogenesis - This is stimulated by pituitary gonadotropin and is a true yolk
formation where the yolk forms and pushes the cortical alveoli to the margins.
The microvilli extend from follicle cell (or oocyte) cytoplasm through pore
canals providing passageways to transport yolk material and nutrients across
membranes to oocytes. Proteins produced in the liver are carried by blood
vessels to the follicles, which transfer them to the oocyte cytoplasm where they
are assembled into yolk.
Spermatogenesis
The development of male sex cells begins with mitotic divisions of spermatogonia. As
a result of their proliferation, cysts are formed – groups of cells originated from one
spermatogonium and surrounded with a common capsule. Further development of
male sex cells occurs in cysts located in the walls of seminiferous tubules. The cells in
each cyst develop synchronously.
The process of spermatogenesis may be divided to three periods:
Growth
Maturation
Formation
The male sex cells coming into meiosis are called primary spermatocytes. During the
growth period, transformations of chromosomes in primary spermatocytes are similar
with those described above for oocytes at the chromatin-nucleolus stage. During this
period some increase in size of sex cells is observed.
During the maturation period two consecutive meiotic divisions occur. In the first
meiotic division the homologous chromosomes detach; therefore, two daughter
secondary spermatocytes are produced with haploid numbers of chromosomes,
each of which consists of two chromatids. The result of second meiotic division, in
which sister chromatids detach, is that two spermatids are formed.
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During the period of formation, the process of spermiogenesis occurs, i.e.
transformation of spermatids to spermatozoa capable of active movement. After the
completion of spermiogenesis the cyst capsules break out and spermatozoa are
released to the lumens of seminiferous tubules.
Scheme of spermatogenesis
During spermatogenesis from one primary spermatocyte four spermatozoa are
formed, and a significant decrease in the size of male sex cells is observed.
Fertilization
Fertilization is the process whereby male and female gametes (spermatozoon and
egg, respectively) join to form a zygote, which is capable of developing into a new
organism. Fertilization is the first stage of embryonic development, which begins with
insemination - the contact of a spermatozoon (passed through micropylar canal) with
the egg cytoplasm, and ending with karyogamy - the fusion of haploid nuclei of gametes
resulting in the formation of a zygote with a diploid nucleus. Soon after penetration of
the spermatozoon into the egg's cytoplasm, its head swells and transforms into the
male pronucleus. Simultaneously the second meiotic division in the egg is completed -
the second polar body is extruded and the remaining haploid chromosome set
transforms into the female pronucleus. The male and female pronuclei migrate into
the depth of the cytoplasm and meet at the central part of the animal pole. During
migration and closing of the pronuclei, the reduplication of chromosomes occurs with
formation of two daughter chromatids. Later the membranes surrounding the
pronuclei disappear and the male and female chromosomes fuse forming the
metaphase plate of the first mitotic cleavage division. After its completion, two
embryonic cells (blastomeres) are formed.
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Page | 33
Laboratory Exercise 1
THE PHYSICAL BASIS OF HEREDITY
LEARNING OBJECTIVES
1. Illustrate the chromosomal behavior during mitosis and meiosis in somatic
and germ cells.
2. Identify specific events in mitosis and meiosis that allow the inheritance of
traits and generation of genetic variation.
Procedure:
1. Get one onion root fixed with 70% ethyl alcohol from a vial using a pair of
forceps.
2. Place the fixed root on a slide. Note the whitish tip of the root. This is the root cap.
Cut the terminal 1 mm of the root using a piece of razor to remove the root cap.
Discard the root cap. Actively dividing cells will be found in the meristematic
region of the root, which follows the root cap.
3. Cut a very thin section of the meristematic region. Discard the rest of the root.
4. Add one drop of acetocarmine on the thin root section. Let the preparation stand
for 1 minute.
5. Cover the stained root section with a coverslip. Heat the slide gently by passing it
over the flame of an alcohol lamp. This will facilitate staining of the chromosomes
and will clear the cytoplasm. Be careful that the specimen does not dry out.
6. Using a straight needle, drop the tip of the needle perpendicular to the specimen;
repeat this until there is an even thin spread of cells.
7. Observe the specimen under the low power objective (LPO) to assess if the
chromosomes have been properly stained.
a. IF THE CHROMOSOMES ARE DEEPLY STAINED – Destain them using 45%
acetic acid. Place a drop of acetic acid on one side of the coverslip. Place a
piece of filter paper against the opposite side of the coverslip to draw the
acetic acid across the specimen. Destaining can be hastened by passing
the slide 3-4 times over a flame. Take care not to boil the sample. Reassess
the staining of the chromosomes.
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b. IF THE CHROMOSOMES ARE POORLY STAINED – restain them using
acetocarmine. Place a drop of acetocarmine on one side of the coverslip.
Place a piece of filter paper against the opposite side of the coverslip to
draw the stain across the specimen. Heat the slide by passing it 3-4 times
over a flame to facilitate staining. Reassess the staining of the
chromosomes.
8. Once the chromosomes have been properly stained, seal the specimen with
paraffin. Heat a bent needle over a flame, place it on the paraffin and apply the
melted paraffin to the edges of the coverslip.
9. Using the LPO, look for cells undergoing mitosis. Focus an area of dividing cells at
the center of the field of view. Switch to the high power objective (HPO) to
identify the stage of mitosis exhibited by the dividing cell. Observe the
arrangement and morphology of the chromosomes at each stage of mitosis. Draw
one cell (to scale) per stage of mitosis in the WORKSHEET. Each circular drawing
blank represents the field of vision using HPO. Take note of the theoretical
magnification you used in observing the cells in your worksheet.
Materials:
Prepared microscopic slides
Procedure:
1. Your instructor will mount prepared slides of animal cells undergoing mitosis,
and plant and animal cells undergoing meiosis. Cells featuring different stages of
cell division will be focused under HPO, and will be indicated by the ocular’s
pointer. Consult your instructor to verify which cell is to be observed.
2. Draw the focused cells in your worksheet and identify the stage of cell division
exhibited by the cells. Note the theoretical magnification used in your worksheet.
Materials:
Twelve (12) pieces of wire:
2 long green 2 short green
2 long red 2 short red
1 long green with a red segment at the tip
1 long red with a green segment at the tip
1 short green with a red segment at the tip
1 short red with a green segment at the tip
Masking tape
Marking pen
Procedure:
1. Get 2 long wires (1 red and 1 green) and 2 short wires (1 red and 1 green). This
will represent the original chromatin fibers in a cell. Wires of the same length are
homologous to each other. Red wires represent chromatin from the female parent
of the cell, and the green wires represent chromatin from the male parent.
2. Using a masking tape, mark the centromeres of each chromatin fiber. Place the
tape exactly at the middle of the short wires, and at a point ¾ the length from the
end of the long wires.
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3. Using a tape, label the chromatin at their tips as follows:
Long green – 1p long red – 1m
Short green – 2p short red – 2m
4. Simulate what happens as the cell goes through the S phase. Replicate each
chromatin fiber by getting an identical set of wires. Connect sister chromatids to
each other by placing tape around their centromeres.
5. Convert the chromatin fibers into chromosomes by coiling the wires.
6. Follow the instruction in your worksheet and answer the questions accordingly.
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WORKSHEET FOR LABORATORY EXERCISE 1
THE PHYSICAL BASIS OF HEREDITY
MICROSCOPIC EXAMINATION
A. Mitosis in Allium cepa L.
For each of the stages of mitosis identified below, draw one root tip cell (as
observed under HPO). Indicate the theoretical magnification used.
B. Prepared slides of mitosis in animal cells, and meiosis in plant and animal cells
Draw one animal cell undergoing mitosis and another undergoing meiosis
in the respective blanks below (as observed under HPO). Beside each drawing,
write the specimen from which the cells came from. Identify the stage of cell
division in each specimen, and indicate the theoretical magnification used.
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Draw the focused plant cells undergoing meiosis in the blanks provided
below (as seen under HPO). Identify the specific stage of meiosis in each specimen,
and indicate the theoretical magnifications used.
1. Mitosis
After completing steps A to E (in the produce above), simulate
mitosis using the provided wires. Follow the instructions given below and answer
the questions.
Draw and label the chromosomes at
metaphase. Identify the types of
chromosomes in the genome. Give the
chromosome number and chromosome
composition of the cell.
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Draw and label the chromosomes at
anaphase. Label the poles of the cell as
well.
In terms of chromosome composition, are the two daughter cells identical? _______
Are the two daughter cells identical to the parent cell? ________________________
If so, cite three (3) ways by which daughter cells and their parent cell are identical.
1. _________________________________________________________________________
2. _________________________________________________________________________
3. _________________________________________________________________________
What events in the interphase and in the division stage of the cell cycle are
responsible for this? Explain.
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Using the same set of wires, pair homologous chromosomes. What stage is this?
_______________________
Assume crossing over between non-sister chromatids. Use green wires with a red
segment at the tip and red wires with a green segment at the tip to indicate crossed
over regions. At what stage does this occur? Draw and label the chromosomes
showing interchanged segments.
Chromosome composition
________________________________________________
________________________________________________
________________________________________________
________________________________________________
________________________________________________
________________________________________________
Stage: _____________________________
Chromosome composition
__________________________________________________
__________________________________________________
__________________________________________________
__________________________________________________
Metaphase I
Page | 40
Draw and label the chromosomes at
anaphase I. Label the poles of the cell.
Page | 41
Draw and label the chromosomes of the
four daughter cells formed after
telophase II. Label the cells as well.
Are the four daughter cells formed during meiosis identical? _____________________
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STUDY QUESTIONS FOR UNIT I
1. The table below presents the criteria to be used in comparing mitosis and
meiosis. Provide the missing information.
d. Presence of synapsis
e. Presence of crossing
over
f. Cell type that
undergoes division
g. Number of daughter
cells formed
h. DNA content of cells
at start of division
i. DNA content of
daughter cells
j. Genetic consequences
3. Give the genetic content (C) and chromosome number (n) of a diploid cell
during the following phases:
a. G1
b. S-phase
c. G2
d. Metaphase
e. Anaphase
f. Telophase after cytokinesis
4. Where do you expect genetic differences between cells to arise, from mitosis
or from meiosis? Why?
Page | 43
5. By what mode of cell division would you expect sperm cells to be formed in
the haploid male bee?
7. Suppose mitotic and meiotic processes had never evolved, what do you think
would have been the consequence(s)?
11. In Coleus, the somatic cells are diploid with 24 chromosomes. How many of
each of the following is present in each cell at the stage of mitosis and meiosis
indicated below?
a. Kinetochore at prophase
b. Chromosomes at anaphase
c. Chromatids at metaphase I
d. Chromosomes at telophase after cytokinesis
e. Centromeres at anaphase
f. Chromosomes at telophase II after cytokinesis
g. Centromeres at anaphase I
h. Chromatids at metaphase
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13. A diploid male organism has two homologous chromosomes. A and B are
from its maternal parent, while A’ and B’ are from its paternal parent. Draw
the chromosomes at the following stages:
a. Anaphase of mitosis
b. Anaphase of the first meiotic division
c. Anaphase of the second meiotic division
REFERENCES:
Klug, W.S., M.R. Cumming, C.A. Spencer and M.A. Palladino. 2012. Concepts of
Genetics 10th ed. Pearson Education, Inc.
Mendioro, M.S., R.P. Laude, M.G.Q. Diaz, J.C. Mendoza and D.A. Ramirez. 2013.
Genetics Laboratory Manual. 13th Revision. Genetics and Molecular Biology Division.
Institute of Biological Science. College of Arts and Sciences, UP Los Banos
Tiu, M.C.T. 2014. Cytogenetic screening of chemicals from water leachate of plastic
slippers using Allium test. CSU Research Digest. Vol. 2 No. 2
Page | 45
UNIT III: MENDELISM: THE BASIC PRINCIPLES OF INHERITANCE
LEARNING OBJECTIVES
1. Discuss the principles of heredity by Mendel.
2. Define sex linkage and sex determination.
3. Illustrate sex-linked inheritance using concept maps.
SUGGESTED TIME FRAME: Seven (7) hours and thirty (30) minutes
Mendelian Genetics
Gregor Johann Mendel, the father of Genetics, was responsible for the laws governing
inheritance of traits by experimenting on a pea plant.
Mendel have used pea plant in his experiments due to the following reasons:
1. Available in many varieties with distinct heritable features (characters)
and different variants (traits)
2. It has strict control over which plant mated with which
3. Each pea plant has male (stamens) and female (carpal) sexual organs
Page | 46
4. In nature, pea plants typically self-fertilize, fertilizing ova with their own
sperm
5. Move pollen from one plant to another to cross pollinate
Because of his experiments, Mendel concluded that physical traits are inherited as
“particles.” Little did Mendel know that these “particles” were actually chromosomes
and DNA. Mendel’s quantitative analysis of F 2 plants revealed the two fundamental
principles of heredity:
a. Law of segregation
The above diagram illustrates simple inheritance of body color in medaka fish. In
medaka, normal color (B) is dominant over red (b). Color is controlled by genes that
assort independently. A homozygous normal (BB) is crossed with a homozygous red
(bb) medaka. All the F1 medaka are heterozygous normal (Bb). Further crossing the
F1 generation will produce both homozygous and heterozygous normal as well as
homozygous red medaka.
To illustrate the above test cross between organisms with different characteristics,
consider the following:
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Parental gene: BB – homozygous normal
bb - homozygous red
To predict the types of offspring that result from this cross, we first determined which
gametes will be produced by each parent. The principle of segregation tells us that the
two alleles in each parent separate, and one allele passes to each gamete. All gametes
from the homozygous BB normal and homozygous bb red color will receive a single
normal (B) allele and 1 red (b) allele. The normal color in this cross is heterozygous
(Bb); so 50% of its gametes will receive a normal allele (B) and the other 50% will
receive a red allele (b).
Crossing the parental gene BB x bb
F1 generation
Gametes (♀/♂) B B
b Bb Bb
B bB bB
Gametes (♀/♂) B b
B BB Bb
b bB bb
To summarize the genotype and phenotypes of this cross, you will have the following:
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the two loci assort independently, then equal number of gametes with haplotypes DP,
Dp, dP, and dp will be produced see table below.
If two individuals with genotype DdPp mate, a 4 x 4 Punnett square can be used to
predict the simultaneous inheritance of both traits in offspring (see Punnett square
below). Independent assortment of genes on different chromosomes should come as
no surprise. It is surprising, however, that the principle of independent assortment
holds generally for genes far from each other on the same chromosome, because of
crossing over during meiosis.
Punnett square depicting the expected genotype and phenotype frequencies in
offspring of two heterozygous parents at two loci (DdPp)
Gametes (♀/♂) DP Dp dP dp
DP DDPP DDPp DdPP DdPp
Normal fins Normal fins Normal fins Normal fins
Pigment Pigment Pigment Pigment
Dp DDPp DDpp DdPp Ddpp
Normal fins Normal fins Normal fins Normal fins
Pigment Albino Pigment Albino
dP DdPP DdPp ddPP ddPp
Normal fins Normal fins No fin rays No fin rays
Pigment Pigment Pigment Pigment
dp DdPp Ddpp ddPp ddpp
Normal fins Normal fins No fin rays No fin rays
Pigment Albino Pigment Albino
Genotypic ratio:
Genotype Frequency
DDPP 1
DDPp 2
DdPP 2
DdPp 4
DDpp 1
Ddpp 2
ddPP 1
ddPp 2
ddpp 1
Total 16
Phenotypic ratio
Normal fins and pigment - 9
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Normal fins and albino - 3
Note that genes on the same chromosome that do not assort in a completely
independent manner are linked and the strength of the linkage is measured by the
degree to which independent assortment is observed. Consider the two linked genes
carried by an individual with genotype DdPp (DP on one homologous chromosome
and dp on the other homologous chromosome). Independent assortment (no linkage)
would result in gametes with equal numbers of each haplotype listed above. Gametes
with only two haplotypes (DP and dp) would be produced in the complete absence of
independent assortment (complete linkage). With incomplete linkage all four
haplotypes would be produced but with an excess of DP and dp and a deficiency of Dp
and dP.
The color of skin in fish is determined by the combination of color pigments. There are
several types of specialized pigment-containing cells (chromatophores) in fish skin.
Each type of chromatophores contains a certain kind of pigment.
Melanophores contain the black pigment melanin.
Erythrophores accumulate red pigments
Xanthophores accumulate yellow pigments.
Iridophores contain crystals of colorless pigment guanine, which refracts and
reflects light giving fish their typical metallic appearance.
In fish, as in other animals, the hereditary variability in body color results from
mutations of genes controlling the synthesis of pigments or the structure and
distribution of pigment cells. The absence, decreased or increased amount of some
pigment in the skin result in changes in body color, i.e. appearance of color morphs.
Numerous color variants have been described in ornamental fish cultivated in aquaria.
For ornamental species such as guppy, goldfish, medaka, and angelfish, the genetic
basis for color variability has been revealed and many color-modifying genes have
been described. For aquaculture species and fish inhabiting natural waters the
information on color variability is much more scarce. Color modifications have been
revealed only in a few species. The appearance of albino individuals in many fish
species may be regarded as an exception.
A. Albinism and its inheritance - The most frequent color modification observed
in fish is albinism. Albinism is the absence of black pigment, melanin, both
in the skin and in the eyes. The albino animals have a yellowish body and pink
eyes. The eyes look pink or red since the blood vessels and capillaries in the
iris and retina become visible due to the absence of melanin. Albino mutants
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have been found among fish of very different systematic groups: lampreys,
sharks, sturgeons and many teleost fish. Albino individuals have been
described in many aquarium fish, several aquaculture species including
rainbow trout, channel catfish, grass carp, and among fish inhabiting natural
waters. The inheritance of albinism has been analyzed in many aquarium fish
and several aquaculture species - rainbow trout, channel catfish and grass
carp. In all cases the albinism was controlled by autosomal recessive mutation.
The crossings of parental wild-type color fish (AA) with albino fish (aa) results
in appearance of wild-type color fish in F1.
Consider the cross of parental wild type color fish (AA) and an albino fish (aa)
will result in the appearance of wild type color fish in F1:
P: ♀ AA (wild-type) x ♂ aa (albino)
F1: Aa (all wild-type)
The crosses between F1 fish give the classical Mendelian ratio phenotypic ratio
of 3:1 (wild type: albino)
F1 x F1: ♀ Aa (wild-type) x ♂ Aa (wild-type)
F2: 1 AA (wild-type): 2 Aa (wild-type): 1 aa (albino)
In test-crosses of F1 fish with albino fish the classical ratio of 1:1 was observed: Aa
(wild-type) x aa (albino) --- 1 Aa (wild type): 1 aa (albino).
A useful tool for analyzing genetic crosses is the testcross, in which one individual of
unknown genotype is crossed with another individual with a homozygous recessive
genotype for the trait in question. Testcrosses reveal the genotype/s of the first
individual.
Dominance revisited
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INCOMPLETE Phenotype of the heterozygote is intermediate (falls
DOMINANCE within the range) between the phenotypes of the two
homozygotes
CO-DOMINANCE Phenotype of the heterozygote includes the
phenotypes of both homozygotes
In complete dominance, the phenotype of the offspring is the same as the phenotype
of any of the parents (see example below), while for incomplete dominance, the
phenotypes of the offspring fall within the range between the phenotypes of the two
parents.
When the heterozygote has a phenotype intermediate between the phenotypes of the
two homozygotes, the trait is said to display intermediate dominance.
The seven characters in pea plants that Mendel studied extensively all exhibited
dominance. However, not all characters have traits that exhibit dominance. Mendel
conducted some crosses concerning the length of time that pea plants take to flower.
When he crossed 2 homozygous varieties that differed in their flowering time by an
average of 20 days, the length of time taken by the F1 plants to flower was intermediate
between those of the two parents.
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The fruit color in eggplant is inherited as an incompletely dominant trait.
With incomplete dominance, a cross between organism with two different phenotypes
produces offspring with a third phenotype that is a blending of the parental traits
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When each allele of a gene is associated with specific substance, co-dominance is
present if both substance appear together in the heterozygote. It occurs when both of
the contribution of both alleles are visible and do not over-power each other in the
phenotype (see example below).
Co-dominance reveals that both allele pairs are fully expressed in a heterozygote form.
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References
Klug, W.S., M.R. Cumming, C.A. Spencer and M.A. Palladino. 2012. Concepts of Genetics
10th ed. Pearson Education, Inc.
Mendioro, M.S., R.P. Laude, M.G.Q. Diaz, J.C. Mendoza and D.A. Ramirez. 2013. Genetics
Laboratory Manual. 13th Revision. Genetics and Molecular Biology Division. Institute
of Biological Science. College of Arts and Sciences, UP Los Banos
Pierce, B.A. 2012. Genetics: A conceptual approach, 4th ed. W.H. Freeman and Company
Ramirez, D.A., M.S. Mendioro and R.P. Laude. 2013. Lectures in Genetics. 10 th ed.
University of the Philippines Los Banos
Tiu, M.C.T. 2014. Cytogenetic screening of chemicals from water leachate of plastic
slippers using Allium test. CSU Research Digest. Vol. 2 No. 2
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