Chapter On p1
Chapter On p1
Chapter On p1
Electrons
➢ All of the characteristics of a cell depend on the molecules it contains.
➢ A molecule is a cluster of atoms held together by covalent bonds
• in which electrons are shared rather than transferred between
atoms.
➢ The shared electrons complete the outer shells of the interacting atoms.
➢ In the simplest possible molecule—a molecule of hydrogen (H2):
• two H atoms:
o each with a single electron
o share their electrons
o thus, filling their outermost shells.
➢ The shared electrons form:
• a cloud of negative charge:
o that is densest between the two positively charged nuclei.
• This electron density
o helps to hold the nuclei together
o by opposing the mutual repulsion between their positive
charges that would otherwise force them apart.
➢ The attractive and repulsive forces are in balance when the nuclei are
separated by a characteristic distance, called the bond length.
➢ The four covalent bonds that can form around a carbon atom, for example,
• are arranged as if pointing to the four corners of a regular
tetrahedron.
• The precise orientation of the covalent bonds around carbon
produces the three-dimensional geometry of organic molecules.
• C • C
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Electrostatic attractions
➢ The ionic bonds that hold together the Na+ and Cl– ions in a salt crystal:
• are a form of noncovalent bond called an electrostatic attraction.
➢ Electrostatic attractions are strongest when the atoms involved are fully
charged, as are Na+ and Cl–.
➢ But a weaker electrostatic attraction also occurs between molecules that
contain polar covalent bonds.
➢ These bonds:
• are much weaker than covalent bonds and are easily broken by
random thermal motions.
o Thus each bond lasts only an exceedingly short time.
• But the combined effect of many weak bonds is far from trivial.
➢ Each water molecule
• can form hydrogen bonds through its two H atoms to two other
water molecules,
• producing a network in which hydrogen bonds are being continually
broken and formed.
➢ The hydrogen atom in such a bond has given up its electron almost
entirely to the companion atom, so it exists as an almost naked positively
charged hydrogen nucleus—in other words, a proton (H+).
➢ Most importantly
• one carbon atom can join to other carbon atoms
o through highly stable covalent C–C bonds
▪ to form chains and rings
o and hence generate large and complex molecules with no
obvious upper limit to their size.
Chemical groups
➢ Certain combinations of atoms, such as:
• the methyl (–CH3)
• hydroxyl (–OH)
• carboxyl (–COOH).
• carbonyl (–C=O)
• phosphoryl (–PO32– )
• amino (–NH2) groups
→occur repeatedly in organic molecules.
➢ The small organic molecules are much less abundant than the organic
macromolecules
• accounting for only about one-tenth of the total mass of organic
matter in a cell.
➢ Sets of molecules with the same chemical formula but different structures
are called isomers
• and mirror-image pairs of such molecules are called optical isomers.
• Isomers:
o are widespread among organic molecules in general
o they play a major part in generating the enormous variety of
sugars.
➢ The way sugars are linked together illustrates some common features of
biochemical bond formation.
• A bond is formed between an –OH group on one sugar and an –OH
group on another by a condensation reaction, in which a molecule of
water is expelled as the bond is formed.
it is the absence or presence of these double bonds that accounts for the
difference between hard (saturated) and soft (polyunsaturated) margarine.
Lipids
➢ Fatty acids and their derivatives, including triacylglycerols:
• are examples of lipids.
➢ Lipids:
• are loosely defined:
o as molecules that are insoluble in water but soluble in fat and
organic solvents such as benzene.
• They typically contain:
o long hydrocarbon chains, as in the fatty acids
o or multiple linked aromatic rings, as in the steroids.
➢ With their two hydrophobic fatty acid tails and a hydrophilic, phosphate-
containing head, phospholipids are strongly amphipathic.
• This characteristic amphipathic composition and shape gives them
different physical and chemical properties from triacylglycerols,
which are predominantly hydrophobic.