Routine Fecalysis
Routine Fecalysis
DEFINITION
Routine fecalysis or stool analysis is the macroscopic, microscopic and chemical analysis of feces
or stool. A Stool analysis is performed for the purpose of detection and identification of parasites
(helminths or protozoa), detection of bleeding in the gastrointestinal tract, disorders of the biliary
ducts and liver, diseases of the pancreas, inflammation, malabsorption and maldigestion
syndromes and investigation of the causes of diarrhea and steatorrhea.
SPECIMEN COLLECTION
1. The patient will collect in a clean container such as a bread pan, leak-proof, plastic disposable
container and transfer the stool into a laboratory container.
2. The stool sample must not to be contaminated by urine or toilet water
Toilet water may contain chemical disinfectants or deodorizers that can interfere with
chemical testing
Containers that contain preservatives for ova and parasites must not be used to collect
specimens for other tests.
Random specimens suitable for qualitative testing for blood and microscopic examination
for leukocytes, muscle fibers, and fecal fats are usually collected in plastic or glass
containers with screw-tops similar to those used for urine specimen
Material collected on a physician’s glove and samples applied to filter paper in occult blood
testing kits are received.
For quantitative testing, such as for fecal fats, timed specimens are required. Because of the
variability of bowel habits and the transit time required for food to pass through the
digestive tract, the most representative sample is a 3-day collection. These specimens are
frequently collected in large containers to accommodate the specimen quantity and
facilitate emulsification before testing.
Care must be taken when opening any fecal specimen to slowly release gas that has
accumulated within the container. Patients must be cautioned not to contaminate the
outside of the container.
Advise patients to label sample container to be submitted properly and completely
Advise patients to complete necessary details on the laboratory request form
3. The standard size of the stool sample for analysis is “thumb size” for formed specimens, 2-5
tablespoons for mucoid or watery specimens.
A. MACROSCOPIC SCREENING
A. COLOR - The brown color of the feces results from intestinal oxidation of stercobilinogen to
urobilin.
B. APPEARANCE and CONSISTENCY
B. CHEMICAL ANALYSIS
1. Occult Blood Test - occult blood has a high positive predictive value for detecting colorectal
cancer in the early stages
INTERFERENCE IN FECAL OCCULT BLOOD TESTING
2. Fecal Enzymes – enzymes that are produced by the pancreas is necessary in degradation of
dietary carbohydrates, fats and proteins.
A. Fecal chymotrypsin – sensitive indicator of less severe pancreatic insufficiency
B. Fecal elastase I – sensitive indicator of exocrine pancreatic insufficiency
3. Carbohydrates – marker of osmotic diarrhea from the osmotic pressure of the unabsorbed sugar
C. MICROSCOPIC ANALYSIS
Detect the presence of leukocytes associated with microbial diarrhea and undigested muscle fibers
and fats associated with steatorrhea.
Presence of leukocytes – neutrophils are the predominant leukocyte in a stool specimen on
patients having bacterial dysentery and colitis
All preparation must be made from a fresh stool sample
Wet preparation are stained with methylene blue while dried preparation can be stained
with Wright’s or Gram stain
Gram stain can differentiate bacteria and can aid in the diagnosis and treatment
A count of as few as three neutrophils per high power field is indicative of bacterial
invasion.
The sensitivity of finding any neutrophils in an invasive condition using an oil immersion
objective is 70%
Microscopic examination of undigested striated muscle fibers in feces can be a helpful tool
in diagnosing pancreatic insufficiency
Fecal fats are also examined in conjunction with the microscopic examination of muscle
fibers.
Fecal fats can be stained by Sudan III stain
2. Take a dry microscope slide and label it with the name or number of the patient.
3. Put one drop of normal saline solution in the middle of the left half of the slide; and one drop of the iodine-acetic
acid solution in the middle of the right half of the slide
4. Using an applicator stick, take a small portion (about 2–3 mm diameter) of the stool.
(a) If the stools are formed, take the portion from the center of the sample and from the surface to look for parasite
eggs.
(b) If the stools contain mucus or are liquid, take the portion from the mucus on the surface or from the surface of
the liquid to look for amoebae.
5. Mix the sample with the drop of sodium chloride solution on the slide.
6. Using the applicator or wire loop, take a second portion of stool from the specimen as described above and mix it
with the drop of iodine–acetic acid solution.
Discard the applicator stick after use.
7. Place a coverslip over each drop (avoid the formation of air bubbles).
8. Examine the preparations under the microscope. For the saline preparation use the x 10 and x 40 objectives and a
x 5 eyepiece. Unstained preparation in the saline solution preparation must be examined under low light since
certain protozoan cysts are colorless
Examine the first preparation with the x10 objective, starting at the top left hand corner as indicated. Focus on the
edge of one coverslip using the x10 objective and examine the whole area under each coverslip for the presence of
ova and larvae of Strongyloides stercoralis. Then switch to the x40 objective and again examine the whole area of
the coverslip over the saline for motile trophozoites and the area of the coverslip over the iodine for cysts.
9. Lugol iodine–acetic acid solution causes the trophozoite forms to become non-motile. The nucleus is clearly
stained but it may be diffificult to distinguish between trophozoite and cystic forms.
10. Using a clean Pasteur pipette, allow a drop of methylene blue solution to run under the coverslip over the saline
preparation. This will stain the nuclei of any cells present and distinguish the lobed nuclei of polymorphs from the
large single nuclei of mucosal cells.
11. If a drop of eosin solution is added, the whole field becomes stained except for the protozoa (particularly
amoebae), which remain colourless and are thus easily recognized.
REPORTING
Report parasite with complete scientific name and stage of the parasite
The parasite count is prone to subjectivity, as per standard operating procedures, the
parasite requested by physicians to evaluate parasitic burden or severity of the parasitism
Human-derived microscopic elements such as Charcot-Leyden crystals, fat globules, and
white blood cells/pus cells must be reported with corresponding count
Example of reporting:
Positive for Entamoeba histolytica trophozoite
Positive for Capillaria philippinensis ova and larva
Pus Cells = 2-4/hpf
No Intestinal Parasite Seen or No Ova or Parasite Seen
Process and perform microscopic analysis within 30 mins to 1 hour to increase the chance
of detecting motile trophozoites.
Process samples promptly in order to maintain the parasite morphology
Samples should not be contaminated with urine
Fecal samples should not be collected within seven (7) days after the administration of
antimicrobial agents, antacids, antidiarrheal medications, bismuth, mineral oil and barium.
Check the reagents and stains used in routine fecalysis and microscopy
Turbidity is a common observation in bacterial and/or fungal contamination in
normal saline solution
Iodine solution must have a strong tea-like hue; discard the solution if the color is
light.
The cytoplasm of trophozoite should stain pale blue and the nuclei should stain a
darker blue with the methylene blue stain.
Cyst stained with iodine should appear gold or yellow, the glycogen vacuole will be
stained brown, nuclei is pale and refractile
Human white blood cells (buffy coat cells) mixed with negative stool can be used as
a quality control (QC) specimen. The human cells when mixed with negative stool
can be used as a quality control specimen. The human cells will stain with the same
color as that seen in the protozoa.
Calibrate microscope once a year or whenever necessary, perform daily cleaning and
maintenance of light microscope to maintain par centrality and par focality
Use clean or new glass slides and cover slips
HELMINTH OVA
VARIOUS PROTOZOAN TROPHOZOITE AND CYSTS
MICROSCOPIC HUMAN-DERIVED ELEMENTS
MICROSCOPIC NON-HUMAN-DERIVED ELEMENTS THAT CAN BE MISTAKEN AS PARASITE
Image sources:
https://cmr.asm.org/content/31/1/e00025-17/figures-only#sec-32
Reference:
http://www.med-chem.com
Urinalysis and Body Fluids 6th Edition by S. Strasinger and M. Lorenzo
WHO Manual Techniques of Basic Health Laboratory 2nd Edition
A refrigerated urine samples for chemical testing must first return to room
temperature because enzymatic reactions on the reagent strip will react
best at room temperature (20 – 25 deg. Celsius)
The laboratory must also establish a rejection criteria or specimen
acceptability criteria
Nonmatching label details with the pertinent data on the request form
Unlabeled specimen containers
Urine samples contaminated with fecal material
Insufficient quantity of urine samples submitted
Improperly transported samples
PHYSICAL EXAMINATION OF URINE
a. Color – variation in color of urine will be dependent on the pathologic
condition, metabolism, physical activity and diet of the patient.
DIFFERENT URINE COLORS AND CAUSES (Adopted from Analysis of Urine
and Body Fluids 6th Edition
by S. Strasinger and M. Lorenzo)
Recent fluid
COLORLESS
consumption
Polyuria or diabetes insipidus
PALE YELLOW Diabetes mellitus
Dilute random specimen
DARK YELLOW Concentrated specimen
B complex vitamins
Dehydration
Bilirubin
Acriflavine
Nitrofurantoin
Phenazopyridine (Pyridium)
ORANGE-YELLOW
Phenindione
Bilirubin oxidized to
YELLOW-GREEN
biliverdin
GREEN Pseudomonas infection
Amitriptyline
Methocarbamol (Robaxin)
Clorets
BLUE-GREEN
Indican
Methylene blue
Phenol
PINK RBCs
Hemoglobin
Myoglobin
RED Beets
Rifampin
Menstrual contamination
PORT WINE Porphyrins
RBCs oxidized to
RED-BROWN methemoglobin
Myoglobin
BROWN Homogentisic acid
(alkaptonuria)
Malignant melanoma
Melanin or melanogen
Phenol derivatives
BLACK
Argyrol (antiseptic)
Methyldopa or levodopa
Metronidazole (Flagyl)
B. CHEMICAL EXAMINATION
The chemical testing of urine is performed using a reagent strip. Simple,
rapid, convenient testing are the advantages of reagent strip testing.
QUALITY CONTROL IN THE CHEMICAL EXAMINATION OF URINE
Clean and organized work area
Adequate lighting and optimal temperature
Theoretical knowledge of the reagent strips
Awareness in the presence of interfering substances that may
occur during testing
Check reagent strip expiry
Quality control of reagent strips are done every day or every
shift using premade control materials (abnormal and normal)
Document and record the results of quality control procedure
Dip the reagent strip in an uncentrifuged, well-mixed urine
sample
In testing using the reagent strip, it is necessary to dip the strip
in the urine briefly to avoid carry-over of other chemical
Remove excess urine on the strip by touching the edge of the
container to avoid carry-over and other potential errors that
may affect reagents in the strip
Blot briefly the reagent strip on an absorbent pad
Monitor specified time of each of the chemical reactions, read
and document the result
C. MICROSCOPIC EXAMINATION OF URINE
The detection and identification as well as quantitative evaluation of the
urine sediments are done in the microscopic examination of urine.
QUALITY CONTROL IN THE MICROSCOPIC EXAMINATION OF
URINE
Adequate sample is important (10 to 15 mL)
Adequate lighting is important
Consistent centrifuge speed and the duration must be
consistent (5 mins at 400 RCF)
A volume of 0.5 to 1 ml after decantation is frequently used
In the glass slide, the recommended volume is 20 microliter
(0.02 mL) covered by a glass cover slip. Excess urine may
result in overflowing and will affect the count and identification
of heavier elements (e.g. casts) due to settling on the sides of
the slide
Consistency in the microscopic examination is necessary.
Observation of a minimum of 10 fields under both low (10×)
and high (40×) power, in this manner, the distribution of
sediments will be assessed. The LPO will be used as a
scanning objective while the HPO will be used to identify
smaller sediments and for identification of casts and various
epithelial cells
Unstained urine sediments have lower refractive index,
reduced light is necessary in the microscopic analysis.
Follow standard operating procedures in the reporting of
sediments
Charts or visual aids of urinary sediments must be posted or
present in the microscopy area.
Correlate microscopic results with physical and chemical
examination findings
Check and maintain microscope regularly to maintain par
focality and par centrality
Use various stains to aid in the identification of sediments
Training or refresher course in microscopy is important to
maintain quality standards and reduce per observer variability
or subjectivity
Image source: https://www.idexx.com/files/sedivue-urine-sediment-guide.pdf
References: Analysis of Urine and Body fluids, 6th Edition by Strasinger and Lorenzo
Graff’s Textbook of routine urinalysis and body fluids by Mundt and Shanahan
PHYSIOLOGIC VARIABLES
POSTURE - change from a lying to an upright position results in a
reduction of the person’s blood volume of about 10% (≈600 to 700 mL)
VENOUS OCCLUSION
A tourniquet or a blood pressure cuff is applied on the intended site not
exceeding 3 minutes to avoid hemoconcentration which in turn may affect
the accuracy of the level of analytes (esp. protein-bound substances)
REFERENCE:
TIETZ TEXTBOOK OF CLINICAL CHEMISTRY AND MOLECULAR DIAGNOSTICS 5TH
Through the years, the gradual process of change in terms of economics and
finances in the clinical laboratory business became more and more evident. At
this day and age, clinical laboratory functions in line with the overall quality
management is a fertile soil for a good business direction. At the end of the day,
one patient satisfaction rooting from all of these improvements is a key for an
exponential growth in profit.
The potential expansion of the test menu requires the need of acquiring new
laboratory equipment and machinery. Upgrading automated machine will not
just ease the work and improve turn around time of tests, it will also increase
the reliability, accuracy and precision in the aspect of testing. An example of
which is the procurement of new automated machine in clinical chemistry with
added procalcitonin, quantitative C-reactive protein and serum ferritin tests. The
addition is due to the high demand in testing of these analytes especially this
time of pandemic.
The supply of the laboratory is the most crucial and probably a well-budgeted
element of all. In order to keep the laboratory functional and operational,
maintaining an adequate supply is very important. Example of which are the
reagents of the clinical chemistry automated machines, supply of blood
collection devices and colored evacuated tubes for various tests.