Crick Brenner Watts-Tobin 1961
Crick Brenner Watts-Tobin 1961
Crick Brenner Watts-Tobin 1961
reverts not by reversing the original mutation but by duced as suppressors of these suppressors. Again all
producing a second mutation at a nearby point on these new suppressors are non-leaky r mutants, and
the genetic map. That is, by a 'suppressor' in the all map within the Bl segment for one site in the
same gene. In one case (or possibly two cases) it B2 segment.
may have reverted back to true wild, but in at least Once again we have repeated the process on two
18 other cases the 'wild type' produced was really a of the new suppressors, with the samo general results,
double mutant with a 'wild' phenotype. Other as shown in Fig. 2, lines i and j.
workers 11 have found a similar phenomenon with All these mutants, except the original FO 0,
ru mutants, and Jinks 12 has made a detailed analysis occurred spontaneously. We have, however, pro-
of suppressors in the hm gene. duced one set (as suppressors of FO 7) using acridine
The genetic map of these 18 suppressors of FO 0 yellow as a. mutagen. The spectrum of suppressors
is shown in Fig. 2, line a. It will be seen that they we get (see Fig. 2, line h) is crudely similar to the
all fall in the Bl segment of the gene, though not all spontaneous spectrum, and all the mutants are
of them are very close to FO 0. They scatter over non-leaky r's. We have also tested a (small) selection
a region about, say, one-tenth the size of the B of all our mutants and shown that their reversion-
cistron. Not all are at different sites. We have rates are increased by acridine yellow.
found eight sites in all, but most of them fall into Thus in all we have about eighty independent r
or near two close clusters of sites. mutants, all suppressors of FO 0, or suppressors of
In all cases the suppressor was a non-leaky r. That suppressors, or suppressors of suppressors of sup·
is, it gave an r plaque on Band would not grow on K. pressors. They all fall within a limited region of
This is the phenotype shown by a complete deletion the gene and they are all non-leaky r mutants.
of the gene, and shows that the function is lacking. The double mutants (which contain a. mutation
The only possible exception was one case where the plus its suppressor) which plate on K have a. variety
suppressor appeared to back-mutate so fast that we of plaque types on B. Some are indistinguishable
could not study it. from wild, some can be distinguished from wild with
Each suppressor, as we have said, fails to grow on difficulty, while others are easily distinguishable and
K. Reversion of each can therefore be studied by produce plaques rather like r.
the same procedure used for FO 0. In a few cases We have checked in a. few cases that the pheno-
these mutants apparently revert to the original wild- menon is quite distinct from 'complementation',
type, but usually they revert by forming a. double since the two mutants which separately are pheno-
mutant. Fig. 2, lines b-g, shows the mutants pro- typically r, and together are wild or pseudo-wild,
..------. r----t
22 101
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ALL 10 12 I FCO(+) 15 18
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+ FCII(-) 72 69
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81
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Bla segment B1bt Bib2.
J.'ig. 2. A tentative map---<mly very roughly to scale-of the left-hand end of the B cistron, showing the position of the FO family of
mutants. The order of sites within the regions covered by brackets (at the top of the llgure) Is not known. Mutants in italics have
only been located approximately. Each line represents the suppressors picked up from one mutant, namely, that marked on the line
in bold llgures
W, wild or pseudo-wild phenotype; ll', wild or pseudo-wlld com- across the 'unacceptable' regions for the -<- shifts,
bination used to Isolate the suppressor; r, r phenotype.
• Double mutants formed with FC 58 (or with l!'C 34) give sharp but these we can avoid by a proper choice of mutants.
plaques on K. We have so far examined the six cases listed in
Table 3 and in all cases the triples are wild or pseudo-
We have tested this prediction in the 28 cases wild.
shown in Table 2. We expected 19 of these to be The rather striking nature of this result can be
wild, or pseudo-wild, and 9 of them to have the r seen by considering one of them, for example, the
phenotype. In all cases our prediction was correct. triple (FO 0 with FO 40 with FO 38). These three
We regard this as a striking confirmation of our mutants are, by themselves, all oflike type ( + ). We
theory. It may be of interest that the theory was can say this not merely from the way in which they
constructed before these particular experimental were obtained, but because each of them, when
results were obtained. combined with our mutant FO 9 (-),gives the wild,
or pseudo-wild phenotype. However, either singly
Rigorous Statement of the Theory or together in pairs they have an r phenotype, and
So far we have spoken as if the evidence supported will not grow on K. That is, the function of the
a triplet code, but this was simply for illustration. gene is absent. Nevertheless, the combination of all
Exactly the same results would be obtained if the three in the same gene partly restores the function
code operated with groups of, say, 5 bases. Moreover, and produces a pseudo-wild phage which grows on K.
our symbols + and - must not be taken to mean This is exactly what one would expect, in favourable
literally the addition or subtraction of a. single base. cases, if the coding ratio were 3 or a multiple of 3.
It is easy to see that our symbolism is more exactly Our ability to find the coding ratio thus depends
as follows: on the fact that, in at least one of our composite
mutants which are 'wild', at least one amino-acid
+ represents +m, modulo n must have been added to or deleted from the poly-
- represents -m, modulo n peptide chain without disturbing the function of the
gene-product too greatly.
where n (a positive integer) is the coding ra.tio (that This is a very fortunate situation. The fact that we
is, the number of bases which code one amino-acid) can make these changes and can study so large a
and m is any integral number of bases, positive or region probably comes about because _this part
negative. of the protein is not essential for its functwn. That
It can also be seen that our choice of reading this is so has already been suggested by Champe
direction is arbitrary, and that the same results (to and Benzer 18 in their work on complementation in the
a first approximation) would be obtained in whichever ru region. By a special test (combined infection on
direction the genetic material was read, that is, K, followed by plating on B) it is possible to examine
whether the starting point is on the right or the left the function of the A cistron and the B cistron
of the gene, as conventionally drawn. separately. A particular deletion, 1589 (see Fig. 5)
covers the right-hand end of the A cistron and part
Triple Mutants and the Coding Ratio of the left-hand end of the B cistron. Although
1589 abolishes the A function, they showed that it
The somewhat abstract description given above is allows the B function to be expressed to a considerable
necessary for generality, but fortunately we have extent. The region of the B cistron deleted by 1589
convincing evidence that the coding ratio is in fact is that into which all our FO mutants fall.
3 or a multiple of 3.
This we have obtained by constructing triple Joining two Genes Together
mutants of the form ( + with + with +)or (- with -
with - ). One must be careful not to make shifts We have used this deletion to re-inforce our idea
that the sequence is read in groups from a fixed
Table 3. TRIPLE MUTANTS HAVING A WILD OR PSEUDO-WU.D PHENO· starting point. Normally, an alteration confined
TYPE to the A cistron (be it a deletion, an acridine mutant,
FO (0 + 40 + 38) or any other mutant) does not prevent the _expre~si~n
FC (0 + 40 + 68)
FC (0 + 40 + 67) of the B cistron. Conversely, no alterat10n w1thm
FC (0 + 40 + 64) the B cistron prevents the function of the A cistron.
FC (0 + 40 + 65)
FC (1 + 21 + 23) This implies that there may be a region between the
-
WT2 WTI WT5
We argued that the deletion 1589 will have lost
this separating region and that therefore the two W l6
·"'
(partly damaged) cistrons should have been joined
together. Experiments show this to be the case, Fig. 6. Genetic map of P 83 and its suppressors, W'l' l, etc.
for now a.n alteration to the left-hand end of the The region falls within segment B9a near the right-hand end of
the B cistron. It is not yet known which way round the map i,;
A cistron, if combined with deletion 1589, can prevent in relation to the other figures
the B function from appearing. This is shown in
Fig. 5. Either the mutant P43 or Xl42 (both of close to the FO 9 site. By a suitable choice of
which revert strongly with acridines) will prevent the partners, we have been able to show that two are +
B function when the two cistrons are joined, although and two are -. Secondly, we have two mutants
both of these mutants are in the A cistron. This is (X146 and X225), produced by hydrazine10 , which
also true of X142 Sl, a suppressor of Xl42 (Fig. 5, fall on or near the site FO 30. These we have been
case b). However, the double mutant (X142 with able to show are both of type - .
X142 81), of the type ( + with -),which by itself is Thus unless both acridines and hydrazine usually
pseudo-wild, still has the B function when combined delete (or add) an even number of bases, this evidence
with 1589 (Fig. 5, case c). We have also tested in this supports a coding ratio of 3. However, as tho action
way the 10 deletions listed by Benzer', which fall of these mutagens is not understood in detail, we
wholely to the left of 1589. Of these, three (386, 168 cannot be certain that the coding ratio is not 6,
and 221) prevent the B function (Fig. 5, case j), although 3 seems more likely.
whereas the other seven show it (Fig. 15, case e). We We have preliminary results which show that other
surmise that each of these seven has lost a number of acridine mutants often revert by means of close
bases which is a multiple of 3. There are theoretical suppressors, but it is too sketchy to report here.
reasons for expecting that deletions may not be A tentative map of some suppressors of P 83, a
random in length, but will more often have lost a mutant at the other end of the B cistron, in segment
number of bases equal to an integral multiple of the B 9a, is shown in Fig. 6. They occur within a shorter
coding ratio. region than the suppressors of FO 0, covering a
It would not surprise us if it were eventually shown distance of about one-twentieth of the B cistron.
that deletion 1589 produces a protein which consists The double mutant WT (2 + 5) has the r phenotype,
of part of the protein from the A cistron and part, as expected.
of that from the B cistron, joined together in the same
polypeptide chain, and having to some extent the Is the Code Degenerate l
function of the undamaged B protein. If the code is a triplet code, there are 64 (4 x 4 x 4)
possible triplets. Our results suggest that it is unlikely
Is the Coding Ratio 3 or 6 ? that only 20 of these represent the 20 amino-acids
It remains to show t.hat the coding ratio is pro- and that the remaining 44 are nonsense. If this
bably 3, rather than a multiple of 3. Previous rather were the case, the region over which suppressors of
rough extimatesl0• 14 of the coding ratio (which are the FO 0 family occur (perhaps a quarter of the B
admittedly very unreliable) might suggest that the cistron) should be very much smaller than we observe,
coding ratio is not far from 6. This would imply, on since a shift of frame should then, by chance, pro-
our theory, that the alteration inFO 0 was not to one duce a nonsense reading at a much closer distance.
base, but to two bases (or, more correctly, to an even This argument depends on the size of the protein
number of bases). which we have assumed the B cistron to produce.
We have some additional evidence which suggests We do not know this, but the length of the cistron
that this is unlikely. First, in our set of 126 mutants suggests that the protein may contain about 200
produced by acridine yellow (referred to earlier) amino-acids. Thus the code is probably 'degenerate',
we have four independent mutants which fall at or that is, in general more than one triplet codes for
each amino-acid. It is well known that if this were
F'unction so, one could also account for the major dilemma of
o!B the coding problem, namely, that while the base
~A ciatron~ ~Bdstron~ cistron
composition of the DNA can be very different in
J
different micro-organisms, the amino-acid composi-
I tion of their proteins only changes by a moderate
amounta. However, exactly how many triplets
I code amino-acids and how many have other functions
we are unable to say.
)(
@J @x
Future Developments
)fl(
@l @x
Our theory leads to one very clear prediction.
(i)J CDx Suppose one could examine the amino-acid sequence
\\\'\ of the 'pseudo-wild' protein produced by one of our
double mutants of the ( + with -) type. Conven-
1'
deletion
1589
tional theory suggests that since the gene is only
Fig. 5. Summary of the results with deletion 1589. The first two
lines show that without 1589 a mutation or a deletion in the A altered in two places, only two amino-acids would
cistron does not prevent the B cistron from functioning. Deletion be changed. Our theory, on the other hand, predicts
1589 (line 3) also allows the B cistron to function. The other that a string of amino-acids would be altered, covering
cases, in some of which an alteration in the A cistron prevents
the function of the B cistron (when 1589 is also present), are the region of the polypeptide chain corresponding
discussed in the text. They have been labelled (a.), (b). etc., for to the region on the gene between the two mutants.
convenience of reference, although cases (a) and (d) are not
discu&!ed in this paper. ./implies function; x implies no function A good protein on which to test this hypothesis is
the lysozyme of the phage, at present being studied are particularly grateful to Prof. C. F. A. Pantin for
chemically by Dreyer 17 and genetically by Streisin- allowing us to use a room in the Zoological Museum,
gerto. Cambridge, in which the bulk of this work was done.
At the recent Biochemical Congress at Moscow, the
1
audience of Symposium I was startled by the Wittman, H. G., Symp. 1, Fifth Intern. Cong. Biochem., 1961 for
refs. (in the press). '
announcement of Nirenberg that he and Matthaeits • Tsuglta, A., and Fraenkel-Conrat, H., Proc. U.S. Nat. Acad. Sci., 48,
had produced polyphenylalanine (that is, a poly- 636 (1960); J. Mol. Bioi. (In the press) .
peptide all the residues of which are phenylalanine) 'Brenner, S., Proc. U.S. Nat. Acad. Sci., 43, 687 (1957).
• For refs. see Watson, H. C., and Kendrew, J. C., Nature,l80 670
by adding polyuridylic acid (that is, an RNA the bases (1961). •
of which are all uracil) to a cell-free system which can 1
Crick, F. H. C., Griffith , J. 8., and Orgel, L. E., Proc. U.S. Nat.
synthesize protein. This implies that a sequence of Acad. Sci., 43, 416 (1957).
macils codes for phenylalanine, and om work suggests
1
Benzer, S., Proc. U.S. Nat. Acad. Sci., 45, 1607 (1959), for refs. to
earlier papers.
that it is probably a triplet of uracils. ' Benzer, 8., Proc. U.S. Nat. A cad. Sci. , 47, 403 (1961); see his Fig. 3.
It is possible by various devices, either chemical or 1 Brenner, S., Benzer, S., and Barnett, L., Nature, 182, 983 (1958).
enzymatic, to synthesize polyribonucleotides with • Brenner, 8., Barnett, L., Crick, F. H. C., and Orgel, A., J. Mol.
Bioi., 3, 121 (1961).
defined or partly defined sequences. If these, too, "Streislnger, G. (personal communication and in the press).
will produce specific polypeptides. the coding problem 11 Feynman, R. P.; lBenzer, 8.; Freese, E. (all personal communi·
is wide open for experimental attack, and in fact cations).
many laboratories, including our own, are already "Jinks, J. L., Hereditv, 18, 153, 241 (1961).
"Champe, S., and Benzer, S. (personal communication and in pre·
working on the problem. If the coding ratio is indeed paration).
3, as our results suggest, and if the code is the same "Jacob, F., and Wollman, E. L., Sea:ualitv and the Genetic~! of Bacteria
throughout Nature, then the genetic code may well (Academic Press, New York, 1961). Levlntbal, C. (personal
communication).
be solved within a year. " Orgel, A., and Brenner, S. (in preparation).
We thank Dr. Alice Orgel for certain mutants and "Sueoka, N. Cold Spring Barb. Svmp. Quam. Bioi. (in the press).
for the use of data from her thesis, Dr. Leslie Orgel "Dreyer, W. J., Symp. 1, Fifth Intern. Cong. Biochem., 1961 (In the
press).
for many useful discussions, and Dr. Seymour 11 Nirenberg, M. W., and Matthael, J. H., Proc. U.S. Nat. Acad. Sci.,
Benzer for supplying us with certain deletions. We 47, 1588 (1961).