Biology Lecture Notes: (Stemer'S Guide)
Biology Lecture Notes: (Stemer'S Guide)
Nagah
Biology Lecture
Notes
(STEMer’s guide)
2023
Lecture (2)
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BI.3.02: students will describe how the structure of the neuron and the transmission of a nerve
impulse allow communication within an organism and with the external environment.
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C D A B C B A A B B D D A A A
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B D A B B C D A C D B B B C D
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A C A B A
7: Both prokaryotic cells and eukaryotic cells have vesicles. Membrane vesicles (MVs) are
lumen-containing spheres of lipid bilayers secreted by all prokaryotes into the
extracellular milieu. They have multifunctional roles in stress response, virulence transfer,
biofilm formation, and microbial interactions.
Q.12 & 14
URT (Passage I)
1. C 2. C 3. B 4. D 5. C 6. D
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Practical work
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Ion Channels
• When ion channels are open, they allow specific ions to move across the
plasma membrane, down their electrochemical gradient—a concentration
(chemical) difference plus an electrical difference.
• Recall that ions move from areas of higher concentration to areas of lower
concentration (the chemical part of the gradient).
• Also, positively charged cations move toward a negatively charged area, and
negatively charged anions move toward a positively charged area (the electrical
aspect of the gradient).
• As ions move, they create a flow of electrical current that can change the
membrane potential.
• Ion channels open and close due to the presence of “gates.” The gate is a part
of the channel protein that can seal the channel pore shut or move aside to
open the pore.
• The electrical signals produced by neurons and muscle fibers rely on four
types of ion channels: leak channels, ligand-gated channels, mechanically gated
channels, and voltage-gated channels:
1. The gates of leak channels randomly alternate between open and closed
positions. Typically, plasma membranes have many more potassium ion
(K+) leak channels than sodium ion (Na+) leak channels, and the potassium
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ion leak channels are leakier than the sodium ion leak channels. Thus, the membrane’s
permeability to K+ is much higher than its permeability to Na+.
• Leak channels are found in nearly all cells, including the dendrites, cell bodies, and axons of all
types of neurons.
2. A ligand-gated channel opens and closes in response to the binding of a ligand (chemical)
stimulus. A wide variety of chemical ligands—including neurotransmitters, hormones, and
particular ions—can open or close ligand-gated channels. The neurotransmitter acetylcholine, for
example, opens cation channels that allow Na+ and Ca2+to diffuse inward and K+ to diffuse
outward.
• Ligand-gated channels are located in the dendrites of some sensory neurons, such as pain
receptors, and in dendrites and cell bodies of interneurons and motor neurons.
• Examples of mechanically gated channels are those found in auditory receptors in the ears, in
receptors that monitor stretching of internal organs, and in touch receptors and pressure
receptors in the skin.
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Ion pump and ion channels establish the resting potential of a neuron
As you know, ions are unequally
distributed between the interior of cells
and the fluid that surrounds them. As a
result, the inside of a cell is negatively
charged relative to the outside. Because
the attraction of opposite charges across
the plasma membrane is a source of
potential energy, this charge difference, or
voltage, is called the membrane potential.
• The membrane potential of a resting
neuron—one that is not sending a signal—
is its resting potential and is typically
between 60 and 80 mV (millivolts).
• Inputs from other neurons or specific
stimuli cause changes in the neuron’s
membrane potential that act as signals,
transmitting and processing information.
• Rapid changes in membrane potential
are what enable us to see a flower, read a
book, or climb a tree. Thus, to understand
how neurons function, we first need to
examine how chemical and electrical
forces form, maintain, and alter membrane
potentials.
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The excess negative charges inside the cell exert an attractive force that opposes the flow of
additional positively charged potassium ions out of the cell. The separation of charge (voltage)
thus results in an electrical gradient that counterbalances the chemical concentration gradient of
K+.
the few open sodium channels in a resting neuron. The concentration gradient of Na + has a
direction opposite to that of K+ (see Table). Na+ therefore diffuses into the cell, making the inside
of the cell less negative.
• If we model a membrane in which the only open channels are selectively permeable to Na +, we
find that a tenfold higher concentration of Na+ in the outer chamber results in an equilibrium
potential (ENa) of 62 mV (Figure b).
In an actual neuron, the resting potential (60 to 80 mV) is much closer to EK than to ENa because
there are many open potassium channels but only a small number of open sodium channels.
Because neither K +nor Na+ is at equilibrium in a resting
neuron, each ion has a net flow (a current) across the membrane. The resting potential remains
steady, which means
that the K+ and Na+ currents are equal and opposite. Ion concentrations on either side of the
membrane also remain steady.
• Keep in mind that the extent of ion movement required to generate the resting potential is
extremely small (about 10-12 mole/cm2 of membrane), far less than would be required to alter the
chemical concentration gradient.
• Under conditions that allow Na+ to cross the membrane more readily, the membrane potential
will move toward E Na and away from EK. As we will see in the next section, this is precisely what
happens during the generation of a nerve impulse.
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of the stimulus, with a larger stimulus causing a greater change in the membrane potential.
Graded potentials induce a small electrical current that leaks out of the neuron as it flows along
the membrane.
• Graded potentials thus decay with distance from their source. Although graded potentials are
not the nerve signals that travel along axons, they have a major effect on the generation of nerve
signals.
• If a depolarization shifts the membrane potential sufficiently, the result is a massive change in
membrane voltage called an action potential.
• Unlike graded potentials, action potentials have a constant magnitude and can regenerate in
adjacent regions of the membrane.
• Action potentials can therefore spread along axons, making them well suited for transmitting a
signal over long distances.
• Action potentials arise because some of the ion channels in neurons are voltage-gated ion
channels, opening or closing when the membrane potential passes a particular level.
If a depolarization opens voltage-gated sodium channels, the resulting flow of Na+ into the neuron
results in further depolarization. Because the sodium channels are voltage
gated, an increased depolarization causes more sodium channels to open, leading to an even
greater flow of current. The result is a process of positive feedback, that triggers a very rapid
opening of all voltage-gated sodium channels and the marked change in membrane potential that
defines an action potential (Figure c).
Action potentials occur whenever a depolarization increases the membrane voltage to a particular
value, called the threshold.
• For mammalian neurons, the threshold is a membrane potential of about 55 mV. Once initiated,
the action potential has a magnitude that is independent of the strength of the triggering stimulus.
Because action potentials occur fully or not at all, they represent an all-or-none response to
stimuli. This all-or-none property reflects the fact that depolarization opens voltage-gated sodium
channels, and the opening of sodium channels causes further depolarization.
• The positive-feedback loop of depolarization and channel opening triggers an action potential
whenever the membrane potential reaches the threshold.
The discovery of how action potentials are generated dates to the 1940s and 1950s, with the work
of British scientists Andrew Huxley and Alan Hodgkin.
Because no techniques were available for studying electrical events in
small cells, they
took electrical recordings from the giant neurons of the squid.
Their experiments led to a model, presented in the next section, that
earned them a Nobel Prize in 1963.
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3- Once the threshold is crossed, the positive-feedback cycle rapidly brings the membrane
potential close to ENa. This stage of the action potential is called the rising phase.
4- Two events prevent the membrane potential from actually reaching E Na: Voltage-gated sodium
channels inactivate soon after opening, halting Na+ inflow; and most voltage-gated potassium
channels open, causing a rapid outflow of K+.
5- Both events quickly bring the membrane potential back toward EK. This stage is called the falling
phase. In the final phase of an action potential, called the undershoot, the membrane’s
permeability to K+ is higher than at rest, so the membrane potential is closer to EK than it is at the
resting potential. The gated potassium channels eventually close, and the membrane potential
returns to the resting potential.
The sodium channels remain inactivated during the falling phase and the early part of the
undershoot. As a result, if a second depolarizing stimulus occurs during this period, it will be
unable to trigger an action potential. The “downtime” when a second action potential cannot be
initiated is called the refractory period. This interval sets a limit on the maximum frequency at
which action potentials can be generated.
As we will discuss shortly, the refractory period also ensures that all signals in an axon travel in one
direction, from the cell body to the axon terminals.
Note that the refractory period is due to the inactivation of sodium channels, not to a change in
the ion gradients across the plasma membrane. The flow of charged particles during an action
potential involves far too few ions to change the concentration on either side of the membrane
significantly.
For most neurons, the interval between the onset of an action potential and the end of the
refractory period is only 1–2 milliseconds (msec). Because action potentials are so brief, a
neuron can produce hundreds per second. Furthermore, the frequency with which a neuron
generates action potentials varies in response to input. Such differences in action potential
frequency convey information about signal strength.
In hearing, for example, louder sounds result in more frequent action potentials in neurons
connecting the ear to the brain. Differences in the time interval between action potentials are in
fact the only variable in transmission of information by an axon.
Gated ion channels and action potentials have a central role in all nervous system function. As a
consequence, mutations in genes that encode ion channel proteins can cause disorders affecting
the nerves, muscles, brain, or heart. The type of disorder depends largely on where in the body the
gene for the ion channel protein is expressed.
For example, mutations affecting voltage-gated sodium channels in skeletal muscle cells can cause
myotonia, a periodic spasming of those muscles; and mutations affecting sodium channels in the
brain can cause epilepsy, in which excessive synchronized firing of groups of nerve cells causes
seizures.
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N.B.
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If the question is
The structures that recieve most of stimul ior neurotransmiters are …….
A. 1 and 4
B. 2 and 3
C. 5 and 6
D. 6 and 7
If the question is
The structure that synthesizes most of neurotransmiters is …….
A. 1
B. 4
C. 6
D. 7
If the question is
The structure that synthesizes large sizeed neurotransmiters is …….
2
A. 1
B. 4
C. 6
D. 7
If the question is
The structure that releases neurotransmiters is …….
A. 1
B. 4
C. 6
D. 7
The evolutionary adaptation that enables fast conduction in vertebrate axons is electrical
insulation, analogous to the plastic insulation that covers many electrical wires. Insulation causes
the depolarizing current associated with an action potential to spread farther along the axon
interior, bringing more distant regions to the threshold sooner. The electrical insulation that
surrounds vertebrate axons is called a myelin sheath (as shown in the figure).
• Myelin sheaths are produced by two types of glia—oligodendrocytes in the CNS and Schwann
cells in the PNS.
• During development, these specialized glia wrap axons in many layers of membrane.
The membranes forming these layers are mostly lipid, which is a poor conductor of electrical
current.
Myelination
• As you have already learned, axons surrounded by a multilayered lipid and protein covering,
called the myelin sheath, are said to be myelinated.
• The sheath electrically insulates the axon of a neuron and increases the speed of nerve impulse
conduction.
• Axons without such a covering are said to be unmyelinated.
Two types of neuroglia produce myelin sheaths: Schwann cells (in the PNS) and oligodendrocytes (in
the CNS).
1- Schwann cells begin to form myelin sheaths around axons during fetal development. Each Schwann cell
wraps about 1 millimeter.
• Eventually, multiple layers of glial plasma membrane surround the axon, with the Schwann cell’s
cytoplasm and nucleus forming the outermost layer.
• The inner portion, consisting of up to 100 layers of Schwann cell membrane, is the myelin sheath. The
outer nucleated cytoplasmic layer of the Schwann cell, which encloses the myelin sheath, is the
neurolemma (sheath of Schwann).
• A neurolemma is found only around axons in the PNS. When an axon is injured, the neurolemma aids
regeneration by forming a regeneration tube that guides and stimulates regrowth of the axon.
• Gaps in the myelin sheath, called nodes of Ranvier, appear at intervals along the axon.
• Each Schwann cell wraps one axon segment between two nodes.
2- In the CNS, an oligodendrocyte myelinates parts of several axons.
• Each oligodendrocyte puts forth about 15 broad, flat processes that spiral around CNS axons, forming a
myelin sheath.
• A neurolemma is not present, however, because the oligodendrocyte cell body and nucleus do not
envelop the axon.
• Nodes of Ranvier are present, but they are fewer in number.
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• Axons in the CNS display little regrowth after injury. This is thought to be due, in part, to the absence of
a neurolemma, and in part to an inhibitory influence exerted by the oligodendrocytes on axon regrowth.
• The amount of myelin increases from birth to maturity, and its presence greatly increases the speed of
nerve impulse conduction.
• An infant’s responses to stimuli are neither as rapid nor as coordinated as those of an older child or an
adult, in part because myelination is still in progress during infancy.
• In myelinated axons, voltage-gated sodium channels are restricted to gaps in the myelin sheath called
nodes of Ranvier. The extracellular fluid is in contact with the axon membrane only at the nodes. As a
result, action potentials are not generated in the regions between the nodes. Rather, the inward current
produced during the rising phase of the action potential at a node travels all the way to the next node,
where it depolarizes the membrane and regenerates the action potential (as shown in the figure).
Thus, the time-consuming process of opening and closing of ion channels occurs at only a limited number
of positions along the axon. This mechanism for action potential propagation is called saltatory conduction
(from the Latin saltare, to leap) because the action potential appears to jump along the axon from node to
node.
The major selective advantage of myelination is its space efficiency. A myelinated axon 20 μm in diameter
has a conduction speed faster than that of a squid giant axon with a diameter 40 times greater.
Furthermore, more than 2,000 of those myelinated axons can be packed into the space occupied by just
one giant axon.
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Questions
1) For a neuron with an initial membrane potential at -70 mV, an increase in the movement of potassium
ions out of that neuron's cytoplasm would result in
A) the depolarization of the neuron.
B) the hyperpolarization of the neuron.
C) the replacement of potassium ions with sodium ions.
D) the replacement of potassium ions with calcium ions.
E) the neuron switching on its sodium-potassium pump to restore the initial conditions.
2) Although the membrane of a "resting" neuron is highly permeable to potassium ions, its membrane
potential does not exactly match the equilibrium potential for potassium because the neuronal
membrane is also
A) fully permeable to sodium ions.
B) slightly permeable to sodium ions.
C) fully permeable to calcium ions.
D) impermeable to sodium ions.
E) highly permeable to chloride ions.
3) The operation of the sodium-potassium "pump" moves
A) sodium and potassium ions into the cell.
B) sodium and potassium ions out of the cell.
C) sodium ions into the cell and potassium ions out of the cell.
D) sodium ions out of the cell and potassium ions into the cell.
E) sodium and potassium ions into the mitochondria.
4) A cation that is more abundant as a solute in the cytosol of a neuron than it is in the interstitial fluid
outside the neuron is
A) HCO3-. B) Cl-. C) Ca++. D) Na+. E) K+.
5) The membrane potential that exactly offsets an ion's concentration gradient is called the
A) graded potential. B) threshold potential. C) equilibrium potential.
D) action potential. E) inhibitory postsynaptic potential.
6) ATP hydrolysis directly powers the movement of
A) K+ out of cells. B) Na+ out of cells. C) Na+ into cells.
D) Ca++ into cells. E) Cl- into cells.
7) Two fundamental concepts about the ion channels of a "resting" neuron are that the channels
A) are always open, but the concentration gradients of ions frequently change.
B) are always closed, but ions move closer to the channels during excitation.
C) open and close depending on stimuli, and are specific as to which ion can traverse them.
D) open and close depending on chemical messengers, and are nonspecific as to which ion can traverse
them.
E) open in response to stimuli, and then close simultaneously, in unison.
8) Opening all of the sodium channels, with all other ion channels closed, which is an admittedly artificial
setting on an otherwise typical neuron should move its membrane potential to
A) -90 mV. B) -70 mV. C) 0 mV.
D) +30 mV. E) +62 mV.
9) A graded hyperpolarization of a membrane can be induced by
A) increasing its membrane's permeability to Na+.
B) decreasing its membrane's permeability to H+.
C) decreasing its membrane's permeability to Cl-.
D) increasing its membrane's permeability to Ca++.
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54) Assume that excessive consumption of ethanol increases the influx of negative chloride ions into
"common sense" neurons whose action potentials are needed for you to act appropriately and not harm
yourself or others. Thus, any resulting poor decisions associated with ethanol ingestion are likely due to
A) increased membrane depolarization of "common sense" neurons.
B) decreased membrane depolarization of "common sense" neurons.
C) more action potentials in your "common sense" neurons.
D) more EPSPs in your "common sense" neurons.
E) fewer IPSPs in your "common sense" neurons.
55) In the sequence of permeability changes for a complete action potential, the first of these events
that occurs is
A) the activation of the sodium-potassium "pump."
B) the inhibition of the sodium-potassium "pump."
C) the opening of voltage-gated sodium channels.
D) the closing of voltage-gated potassium channels.
E) the opening of voltage-gated potassium channels.
56) Saltatory conduction is a term applied to
A) conduction of impulses across electrical synapses.
B) an action potential that skips the axon hillock in moving from the dendritic region to the axon terminal.
C) rapid movement of an action potential reverberating back and forth along a neuron.
D) jumping from one neuron to an adjacent neuron.
E) jumping from one node of Ranvier to the next in a myelinated neuron
57)By using the opposite graph answer the following:
1- which area(s) of the graph indicate(s) the opening of Na+ ion
channels and the diffusion of Na+ ions into the nerve cells? Explain your
answer.
2- repolarization occurs in which areas? Explain
your answer.
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URT
Biology Test
25 Questions – 45 Minutes
Passage II
In the 1940s, scientists thought all genetic material was contained in structures called chromosomes and
that chromosomes had been found only in the nucleus of a cell (not in the cytoplasm):
Chromosomes are composed of 2 types of molecules, proteins and deoxyribonucleic acid (DNA). Proteins
are composed of subunits called amino acids. DNA consists of
chains of subunits called nucleotides. The parts of that
responsible for the transmission of genetic information are called
genes. Two scientists in the 1940s debate whether genes are
made of proteins or DNA.
Protein Hypothesis
Genes are made only of proteins. Proteins make up 50% or more
of a cell’s dry weight. Cells contain 20 different amino acids that
can be arranged in a virtually infinite number of ways to make
different proteins. The number and arrangement of different amino acids within a protein form the codes
that contain hereditary information. In contrast, only 4 different nucleotides make up the DNA found in
cells, and they are believed to form chains only in certain ratios. As a result, the number of different
combinations that DNA can carry is much smaller than the number that proteins can carry.
DNA Hypothesis Genes are made only of DNA. DNA is found exclusively in the cell’s nucleus, whereas
proteins are found throughout the nucleus and cytoplasm. Additionally, the amount of protein in a cell
varies from cell type to cell type, even within the same animal. Though DNA is less abundant than proteins,
the amount is consistent from cell type to cell type within the same animal, except for the gametes (the
reproductive cells). Gametes have half the amount of as other cells in the body. Gametes also have half the
typical number of chromosomes. Thus, the amount of DNA in cell is correlated with the number of
chromosomes in the cell. No such correlation is found for proteins.
Question numbers 1to 7 are related to this Passage II.
1. Which of the following statements is most consistent with the DNA Hypothesis? The amount of DNA
will generally increase from cell type to cell type as the number of:
A. Amino acids in the nucleus increases from cell type to cell type.
B. Amino acids in the nucleus increases from cell type to cell type.
C. Chromosomes in the nucleus increases from cell type to cell type.
D. Chromosomes in the nucleus increases from cell type to cell type.
2. By referring to the observation that DNA is found exclusively in the nucleus while proteins are found
throughout the cell, the scientist supporting the DNA Hypothesis implies that genes are made only of
DNA because which of the following are also found only in the nucleus?
A. Chromosomes B. Gametes C. Vitamins D. Fatty acids
3. According to the passage, a difference between DNA and proteins is that both types of molecules:
A. Proteins are found only in gametes while DNA is not.
B. Proteins and DNA are abundant in the cytoplasm.
C. Proteins contain 20 different amino acids while DNA contain 4 types of nucleotides.
D. Protein contain nitrogen base while DNA contain peptides.
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4. According to the Protein Hypothesis, which of the following observations provides the strongest
evidence that genes are composed of proteins?
A. Proteins composed of 20 amino acids.
B. Protein is composed of smaller subunits than are DNA.
C. Proteins are abundant in the nucleus only.
D. The concentration of proteins is generally consistent from cell to cell.
5. Mitochondria are organelles located in the cytoplasm that are responsible for energy transformation
in a cell. After the 1940s, it was observed that mitochondria contain their own genes. This observation
contradicts evidence stated in which hypothesis?
A. The Protein Hypothesis, because if genes are made of proteins, the observation would show that
proteins are present inside the nucleus.
B. The DNA Hypothesis, because if genes are made of DNA, the observation would show that DNA is
present outside the nucleus.
C. The DNA Hypothesis, because if genes are made of DNA, the observation would show that DNA is
present inside the nucleus.
D. The Protein Hypothesis, because if genes are made of proteins, the observation would show that
proteins are present outside the nucleus.
6. The scientist who describes the DNA Hypothesis implies that the Protein Hypothesis is weakened by
which of the following observations?
A. Proteins are found only in the nucleus.
B. Protein molecules are composed of many subunits.
C. For a man, the amount of protein in different types of cells is not the same.
D. For a man, the amount of protein in the gametes is half that found in other types of cells.
7. Which of the following illustrations of a portion of a
protein molecule is consistent with the description in
the passage?
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