Imaging Data Acquisition Assignment Help

For any Assignment related queries, Call us at : - +1 678 648 4277

You can mail us at : - [email protected] or
reach us at : - https://www.matlabassignmentexperts.com/
Problem 1

Spatial attention has been hypothesized to be an emergent function of a “Tri-nodal

Cortical Network”.

a) Name each of the three cortical regions that comprise the “Tri-nodal Cortical
Network” for spatial attention Frontal eye fields, posterior parietal cortex and
cingulate gyrus.

Solution.

Frontal eye fields, posterior parietal cortex and cingulate gyrus

b) Design your own or describe a published experimental paradigm to probe the

attention network. Your answer must include a clearly stated hypothesis (5 points), a
briefly, but accurately described paradigm , and predicted or reported outcome.

Solution.

Several described in textbook and in Brad Dickerson’s lecture notes; levels of arousal, visual
or spatial directed attention, domain or modality specific attentional modulation.

matlabassignmentexperts.com
c) Choose an appropriate acquisition sequence for collecting this scan noting type of
sequence, and relevant parameters.

Solution.

For example:
Gradient echo EPI at 3T, TR = 2000 ms, TE = 30 ms, 20 slices, 5 mm thickness, 1 mm gap,
FOV = 220 mm, matrix size = 64x64, BW = 2520 Hz/pixel, etc.

Problem 2 :

Standard functional imaging at the Martinos Center uses an echo planar (EPI) imaging
paradigm (30 slices, 4 mm slice thickness, TE = 30 ms, TR = 2000 ms, matrix size =
64x64).

a) What is the phenomenon that causes EPI distortions called?

Solution.

Magnetic susceptibility, which leads to Bo-field inhomogeniety

b) What regions of the brain are most susceptible to these distortions. Explain.

matlabassignmentexperts.com
Solution.

orbitofrontal, medial-temporal- areas that are at air tissue interfaces.

c) What relaxation parameter allows the generation of contrast through the BOLD effect?

Solution.

T2*; the paramagnetic nature of deoxyhemoglobin will slightly alter the local magnetic
field, leading to spin dephasing. This is a concentration-dependent phenomenon; as the
amount of dHb changes, so will the local T2*. T2 is also acceptable; SE-BOLD also produces
functional contrast that is more sensitive to changes around smaller vessels (why?).

Problem 3:

After a short fMRI scan during which your subject performed a carbon dioxide inhalation
task (block design paradigm in which she alternates between breathing room air and
breathing room air enriched with 10% carbon dioxide), she takes a coffee break. The
caffeine in her coffee is a known vasoconstrictor (i.e. decreases the radius of arterioles).

a) Will caffeine cause a global increase or decrease in baseline cerebral blood flow
(CBF)? Explain.
matlabassignmentexperts.com
Solution.

CBF is proportional to r4 , so a vasoconstriction will decrease blood flow. The major way
blood flow is regulated in the brain is by vasoconstriction/ dilation of arterioles perfusing
tissue and capillary beds. A change in arteriolar diameter results in a change in vascular
resistance, leading to a change in flow. Vasodilation decreases vascular resistance, resulting
in an increase in blood flow. Vasoconstriction increases vascular resistance, resulting in a
decrease in blood flow.

b) Carbon dioxide inhalation is thought to (increase/ decrease/ not affect) oxygen

metabolism (CMRO2). Explain

Solution.

Carbon dioxide inhalation should not alter CMRO2. Carbon dioxide is a potent vasodilator
and will cause arteriolar smooth muscle to relax, thereby increasing CBF; however, it should
not alter neuronal activity in an appreciable way. CMRO2 is thus not expected to change.
This is a key assumption made in Hoge and Davis' seminal work, and is one that is still made
in state-of the-art studies. The hemoneural hypothesis, if correct, may challenge this idea.

matlabassignmentexperts.com
Happily caffeinated, she returns to the magnet and you resume scanning using the exact
same carbon dioxide inhalation task. Assume that the absolute change in CBF during
carbon dioxide inhalation is the same as in the original scan (i.e. before coffee).

c) Do you expect the BOLD percentage change during carbon dioxide inhalation to
(increase/ decrease/ stay the same), compared to the original scan (i.e. before coffee)?

Solution.

To help you answer this problem, consider the BOLD/flow relationship derived by Hoge
and Davis; feel free to plot this curve if it helps you answer the problem.

Since CO2 is a potent vasodilator ΔCBF should be positive during CO2 inhalation blocks.
We are also told that ΔCBF will stay the same before and after caffeine ingestion. Since
CBFo decreases due to caffeine, and ΔCBF is positive and stays the same, the percentage
change (ΔCBF/ CBFo) increases.

The flow-BOLD relationship is drawn below. A increase in (ΔCBF/ CBFo) moves us to the
right and up on the curve. Therefore, the percentage BOLD response (ΔBOLD/BOLDo) also
increases.

matlabassignmentexperts.com
Problem 4:

The post stimulus undershoot (PSU) is a consistent feature of the BOLD hemodynamic
response. Provide a possible explanation for the PSU that considers dynamic changes
in physiology during activation. Feel free to use hand drawn diagrams and/or graphs.

Solution.

matlabassignmentexperts.com
One possible explanation: after neural activity ceases, blood flow returns to baseline faster
than the venous vasculature can shrink back to its original size (venous vessels are compliant
and increase in volume in response to increased pressure and flow). Since flow returns to
baseline more quickly than blood volume, there ends up being a greater amount of
deoxyhemoglobin present transiently. Once volume returns to baseline, the BOLD signal
does as well (as seen below).

matlabassignmentexperts.com
Problem 5:

What are two different types of experimental manipulation used in fMRI tasks for
relating specific mental processes to specific brain regions? For each, give an example
from something presented in class or a published study.

Solution.

I was initially looking for:

1) Hold the stimulus constant and vary the task:

For the self reference task, the stimulus (trait adjectives) is held constant and the task varies
between self reference and semantic questions.

2) Hold the task constant and vary the stimulus

For the SIRP task, the task (maintain information in WM) is constant and the stimulus varies
(parametric modulation of working memory LOAD)

I also accepted (because the wording of the question is sufficiently vague that nearly all of
you interpreted it this way!):

matlabassignmentexperts.com
1) Block design
2) Event-related

Problem 6:

It is well known that fMRI data is very noisy. Considerable effort is being made on
multiple fronts to improve activation detection sensitivity (improve signal to noise). For
each of the domains listed describe one way to improve sensitivity to fMRI signal
changes and explain why it would work.

a) Image acquisition
b) experimental design
c) image analysis (post-processing)

Solution.

a) Higher field strengths, Multi-channel imaging coils, Restrict head motion, Monitor
respiratory and cardiac signal to use as regressors, Gate to cardiac signal, Choose
better TE to optimize BOLD contrast, averaging, larger voxel size

b) More trials, Longer blocks, Design experiments s.t. design vectors are orthogonal to drift
vectors, Create tasks that better isolates cognitive area of interest, fast event

matlabassignmentexperts.com
c) crelated with more trials c) Smooth data (optimize smoothing kernel), Temporally filter
data to remove autocorrelation, Use FIR analysis if HRF is not well known, Use model-free
analysis if there is no prior info about expected signals, ROI based analysis.

Problem 7:

Diffusion Weighted Imaging is used to investigate white matter integrity and pathology
associated with normal aging and neurological disorders such as multiple sclerosis that
are known to disrupt axonal function and/or myelination. a) What would you expect to
observe about FA values in areas of disruption along a white matter tract, such as the
cortico-spinal tract? Explain.

Solution.

Goes down relative to the FA value of a healthy subject at that same point along the tract.
Fractional anisotropy (FA) is a metric of the variance of the eigenvalues fo the tensor D.
White matter tracts have high FA values since they are directional, i.e. the diffusion along a
specific direction is evident. Multiple Sclerosis (MS) patients that have a disruption along a
WM tract will therefore have low FA values at that point.

matlabassignmentexperts.com
b) What would you expect to observe about FA values in areas of disruption along a
white matter tract at the site of crossing with an unaffected tract? Explain.

Solution.

Goes up relative to the FA value of a healthy subject at that same point of crossing between
the two tracts.

The FA value would be roughly the same as the FA value of the unaffected tract since the
contribution of the disrupted path to the FA measure is minimal.

matlabassignmentexperts.com