The Quantum Mechanical Model of Atom
The Quantum Mechanical Model of Atom
Model of Atom
Electron Configuration
It gives the representation of how the electrons are distributed
in an atom
Models of Atoms
Electron
Thomson's Plum Pudding Model Positive charged
particles
s=0 d=2
p=1 f=3
s = 1 orbital d = 5 orbitals
0 +2, +1, 0, -1, -2
p = 3 orbitals f = 7 orbitals
+1, 0, -1 +3, +2, +1, 0, -1, -2, -3
z
s - Orbital is a spherical shape centered around
the nucleus. The spherical shape means that the
electron is moving with 90% probability in a region y
of space within the sphere.
x
p - Orbitals have two lobes in dumbbell shape that lie along
three axes (x, y, z).
z z z
y y y
x x x
x y x y x y
z z
x y x y
note:
The four quantum numbers describe the state of a particular electron in a given orbital.
Each electron has its own set of four quantum numbers, and no two electrons in the
atom can have the same set.
Four Quantum Numbers
1. 3p5 n= 3 2. 4d4 n= 4 3. 5f13 n= 5
ℓ= 1 ℓ= 2 ℓ= 3
mℓ = 0 mℓ = 1 mℓ = 2
ms = -1/2 ms = +1/2 ms = -1/2
Electron Configuration
Degenerate
- Orbitals having the same or equal energy leads to a listing of
increasing energies of the orbitals.
Above the 3p level, there are overlaps of the sublevels of the
principal energy that cause a change in the order of their energies.
n + ℓ rule, the orbital with the lowest energy is usually the sum
of n and ℓ is the lowest.
example:
3d sublevel 4s sublevel
n+ℓ 3+2=5 4+0=4
Mnemonic
- Means assisting or designed to assist memory.
- A device to help determine the order by which orbitals are filled.
It is separated by:
Listing all the orbitals in the principal energy levels and sublevels.
Draw diagonal parallel arrows that would strike the tabular listing,
starting at the first principal level and sublevel.
1s, 2s, 2p, 3s, 3p, 4s, 3d, 4p, 5s, 4d, 5p, 6s, 4f, 5d, 6p, 7s
Orbital Diagrams
- Shows the arrangement of electrons in an atom.
- Uses boxes containing small arrows indicating the electrons represent
the orbitals
Stability of Atoms
Magnetic Property
Metals, Nonmetals, and Metalloids
Atomic Properties and Their Trends in Periodic Table
Stability of Atoms
Special stability is associated with certain electron
configurations in an atom.
Magnetic Property
Paramagnetic Diamagnetic
Elements that made up of Elements consisting of atoms
atoms with unpaired electrons. with paired electrons.
Attracted to magnetic fields. Weakly repelled or not affected
by the magnetic fields.
example:
example:
1s2, 2s2, 2p4
- 2 unpaired electrons 1s2, 2s2, 2p6, 3s2
- all have paired electrons
Properties of metals
Luster - mirror-like shine that reflects light well.
Conductivity - ability to transfer heat and electricity well.
Malleability - ability to be rolled or hammered into thin sheets.
Ductility - ability to be drawn into wire.
Nonmetals Metalloids
- Brittle, lackluster, and have - Both have metallic and
poor conductivities nonmetallic properties.
In the periodic table, metals are located on the left except for hydrogen,
and nonmetals are located on the right. The zigzag separating the two are
the metalloids.
If the atom does not bond, one-half of the distance between the nuclei of two
adjacent atoms is measured as its radius when they are closest together.
Van der Waals radius
If the atom is a metal, one-half the distance between the nuclei of two adjacent
atoms in the metallic crystal is measured.
Metallic Atomic radius
Radii - Measured in angstroms and picometer as the unit to express atomic radii.
Issue:
02 IONIZATION OF ENERGY
- The energy needed to remove an atom's most loosely held electron
is called first ionization energy
Issue:
03 ELECTRON AFFINITY
- The measure of the energy change that occurs when an atom gains
a single electron and forms a negative ion.
The more energy released by the atom, the more stable it becomes
when it gains electrons.
When the energy is released, electron affinity is negative; when
energy is absorbed, electron affinity is positive.
Issue:
Issue:
Henry Moseley
- Determined the atomic numbers of elements and rearranged the
elements in the periodic table according to increasing atomic
numbers.
The Periodic Law
- The properties of elements are periodic functions of their atomic
numbers.
Periods and Groups in the Periodic Table
Periods are the horizontal rows, and groups are the
vertical columns.
Periods
- Horizontal row of elements in the periodic table.
- 7 periods
Groups
- Vertical columns of elements
IUPAC Notation
- Begins with group 1 on the left side and continues through
group 18 on the right side
US Notation
- Uses Roman numerals (I - VIII) and the letters A and B to indicate
the A and B families.
Elements in the same group in the periodic table have similar outer electron
configuration, giving them similar properties.
Group 1 (IA), Group 2 (IIA), Group 17 (VIIA), Group 18 (VIIIA) have strong similarities.
01 GROUP 1 (IA)
- Called alkali metals except for hydrogen note:
02 GROUP 2 (IIA)
note:
- Called alkaline earth metals Alkaline earth metals have
- Less metallic character than the two valence electrons with
alkali metal. ns2
Alkaline earth metals form 2+
- Reactive and do not occur as a free
ions
element in nature.
- Soluble in water
Beryllium, Magnesium, Calcium, Strontium, Barium, and Radium
Beryllium Magnesium
- Poisonous even when low - Light and lustrous metal
concentrations
Strontium and Barium
Calcium - Soft and reactive metals
- Fairly hard silvery metal - Stored in mineral oil
Radium
- Radioactive and extremely
dangerous to handle.
03 GROUP 3 (IIIA)
2 1
- Has three valence electrons with the configuration of ns np .
Boron, Aluminum, Gallium, Indium, Thallium
Boron
- Does not form 3+ ion readily as the other elements in
the group.
- It is a metalloid.
- Brownish powder when impure and yellow crystals
when pure.
Aluminum
- Most abundant metal in the Earth's Crust.
- Light, shiny, and noncorroding metal.
04 GROUP 14 (IVA)
- Has four valence electrons with the configuration of ns 2np 2.
- Shows a progression of metallic character: from Carbon (nonmetal)
to Silicon (metalloid) to Tin and Lead (metal).
Carbon, Silicon, Germanium, Tin, Lead note:
Silicon
- Dull solid and somewhat metallic in appearance.
- Second most abundant element in Earth's crust.
- When refined to an extremely high purity is used as a
semiconductor in transistors.
- Major component of sand and gravel in the form of silicon
dioxide known as silica.
Silica is used in the production of glass.
note:
05 GROUP 15 (VA)
- Has five valance electrons with ns2np3 configuration
- Shows a progression of nonmetallic to a metallic character: from
Nitrogen and Phosphorus (nonmetal) to Arsenic and Antimony
(metalloids) to Bismuth (metal).
Nitrogen
- Exist in nature as stable diatomic (N2) molecules in a gaseous
state.
- Comprises 80% of the air.
Phosphorus
- Soft solid
- Exist in white and red allotropic forms
Both forms are very toxic when touched by skin, ingested, or
inhaled as a vapor.
The red form is fairly stable.
Arsenic
- Exist in three allotropic forms: black metallic, gray metallic, and
waxy yellow nonmetallic.
- Used as poisons.
The yellow nonmetallic is very unstable that it cannot be kept at
room temperature.
Antimony
- Exist in gray metallic form and unstable.
Bismuth
- Soft lustrous metal.
06 GROUP 16 (VIA)
- Has six valance electrons with ns2np 4 configuration
- Ions with 2- charge.
Oxygen
- Exist in two allotropic forms: Oxygen (02) and Ozone (03)
Oxygen is an odorless and colorless gas, but is pale in liquid
form is reactive, and can combine with all other elements
except with some of the noble gases.
Ozone is more reactive and in pure form is explosive as it
decomposes to oxygen.
07 GROUP 17 (VIIA)
- Halogens
- Has seven valance electrons with ns2np5 configuration.
Fluorine Bromine
-Exist as pale yellow gas. - Dense, dark, red liquid which
- Very reactive and toxic. readily evaporates to a
reddish-brown gas that stays
Chlorine
on the surface of the liquid.
- Exist as greenish-yellow gas.
- Toxic and been used as a
poison gas.
Iodine
- Bluish black lustrous solid that sublimes to a purple vapor.
- It is used as an antiseptic called tincture of iodine when dissolved
in ethyl alcohol.
Astatine
- Radioactive element that occurs in very small amounts on the Earth.
08 GROUP 18 (VIIIA)
- Has eight valence electrons with ns2np6 except for Helium.
Helium has only two valence electrons, it is associated with the
group because its properties are very much like the other elements.
- Known as the noble gases.
- Colorless and exhibit little or no reactivity at all.
Osmium
- The most dense metal.
note:
ACTINIDES
- Belong to period 7, but are not classified to any group.
- All are radioactive.
note:
Ionic Bonds
s
Atoms react to become stable. Stability is attained when the atom
acquires a valence level that is isoelectronic with the valence level of
noble gases.
Transferring Electrons
Cation
Positively charged ions.
Smaller than its parent atom.
When an atom loses an electron, a negative charge is
removed leaving behind a positively charged particle.
Anion
Negatively charged ions.
Larger than its parent atom.
When an atom gains an electron, it takes on the negative charge of
the additional electron and becomes a negatively charged ion.
note:
Atoms that lose electrons have an octet on the lower energy level,
and those that gain electrons need a few electrons to complete
an octet in the outer energy level.
The group number of a representative element on the periodic
table tells the number of valence electrons its atom has.
Polyatomic Ions
- Groups of atoms that carry electrical charges as unit particles.
- Act as a single unit and maintain their identity in combining with other
ions to form an ionic compound.
2-
O
All the oxide ions: O2 : 2- x 3 = 6-
C All the carbon ions C4+ : 4+ x 1 = 4+
CO ionic charge = (6-) = (4+) = 2
O O
Ionic Bond
- Electrostatic attraction that holds the ions together.
Ionic Compound
- Substance formed by the combination of ions.
The Lewis symbol or formula can illustrate the transfer
of electrons between atoms.
1 Al + O
3+
Symbol of the positive ion is written first.
02 If the valences of the positive and negative parts are the same,
there is no need for crisscrossing.
example:
Ca + O
2-
Ca + O
2+
Sn O Sn2/2 O4/2
2-
SnO2
4+
(NH4)2CO3
-2
NH4+ CO3
The element with positive valence is named first, then the element
with negative valence is given with the suffix -ide.
example:
a. Greek Prefixes
di-, tri-, tetra-, penta- for the negative part.
b. Suffixes
-ous and -ic for the Latin name of the positive part to denote
lower and higher valences.
c. Roman Numerals
Indicate the specific valences of the cations with multiple
charge
example:
a b c
FeCl2 iron dichloride ferrous Chloride iron (II) chloride
FeCl3 iron trichloride ferric Chloride iron (III) chloride
Cl
-
Arrhenius Theory
Acid
- Compound that dissociates into a hydrogen ion, H , and an anion
+
example:
Base
-
- Compound that dissociates to give hydroxide (OH ) ions and cations
when dissolved in water.
- Also called an alkali.
- Form solutions that conduct electricity.
- Bitter taste, feel slippery to touch and react with acids.
example:
b. Binary acids in water solutions are taken from the name of the
element combined with hydrogen, using prefix hydro-, suffix -ic and
adding the word acid.
example:
When middle elements of oxyacids can assume two valences, the one
corresponding to the lower state is given the -ous ending and the other in
a higher state, the -ic ending then adding the word acid.
example:
When there are more than two oxyacids of different valences, the prefix
hypo- is used for the lower valence than that of the -ous acid and prefix
per- for that with valence higher than that of the -ic acid.
example:
b. Salts that are derived from polyprotic acids are best named by
indicating the number of hydrogen atoms that are unneutralized.
example:
note:
NaH2PO 4 sodium dihydrogen phosphate
Polyprotic acids are
acids more than one
H+ as positive part
CHAPTER 14
Covalent Bonds
note:
Electron-Dot Symbols
A neutral particle that results
Illustrate the sharing of electrons. from the union of two or
more atoms is called a
example:
molecule.
H +H H H
A hydrogen atom has only one valence electron. It needs one more
electron to have a stable electron configuration. Two hydrogen atoms
share a pair of electrons to become stable as the hydrogen molecule, H2.
Cl Cl Cl
A chlorine atom has seven valence electrons. It needs just one more
electron to complete an octet and attain a stable electron configuration.
It can share its unpaired electron with another chlorine atom.
Remember:
Except H2, which is stable with two valence electrons, they conform
with the octet rule of stability.
01 Get the sum of the valence electrons of the atoms in the molecule
02 Write the sequential arrangement of atoms after choosing the central
atom.
The central atom is often the first atom in the molecular formula, the
atom with the higher covalency, or is capable of a higher oxidation
number.
example:
Resonance
Observation regarding the molecules NO2, O2, and O3 is that two electron
dot structures can be written for each of them.
Resonance Structure
Resonance Hybrid
The structure of a molecule cannot be
It is the actual molecule.
accurately represented by a single Lewis
formula rather, two formulas taken
together can describe the molecule better.
02 Pi (π) Bond
Conditions:
Two atomic orbitals that will overlap must have one electron each of
opposite spins, or alternately, one must have two electrons of
opposite spins and the other, unoccupied.
The energies of the atomic orbitals that will overlap must be of
comparable magnitude.
The atomic orbitals that will overlap have the same symmetry relative
to the internuclear axis.
Antibonding MO
Electronegativity
Predict the polar character of the bond that holds the atom.
Nonpolar if the electronegativity difference between the bonded
atom is 0 - 0.3 units.
Polar if the electronegativity difference between the bonded atom
is 0.4 - 1.6 units
Ionic if the electronegativity difference is equal or greater than 1.7
units.
Bond Length
- Distance between two nuclei along the bond axis in which the
stabilizing effects of overlapping orbitals are balanced by repulsion
between the positively charged nuclei.
Measured in Angstrom units (1A = 1 x 10-8 cm)
Bond Energy
- The energy necessary to dissociate the bonded atoms to their
ground state.
Bond Angle
- Predicted from the orientation and direction of the bonding orbitals
and all together indicate the shape or configuration of the whole
molecule.
2 linear
3 trigonal planar
4 tetrahedral
5 trigonal bipyramidal
6 octahedral
Polarity of Molecules
Molecules are classified as polar or nonpolar depending on the
polarity of the individual bonds and the overall shape of the
molecule,
Polar Molecules
Have one polar bond or if there are more, their individual bond
dipoles do no cancel.
Nonpolar Molecules
Carbon atoms have the unique ability to form strong bonds with
each other in different ways.
Carbon atoms can be bonded to each other by single, double, or
triple bonds.
Four or more carbons in a molecule may be arranged differently
that corresponds to a different compound.
Concepts:
z z
y y sp 3
x x
s Px sp 3 109.5°
z z
y y sp 3
x x
Py Pz sp 3
Together, the four sp hybrid orbitals have bonded angles of 109°28' (109.5°).
3
Methane (CH4)
H
Formed when each of the sp orbitals overlaps with
the s orbital of a hydrogen atom. C
H H
The first member of a series of organic compounds.
H
Ethane (C2H6)
H H
Simples molecule containing a sigma carbon-carbon
H C C H
bond.
All the angles are near the tetrahedral value of 109°28. H H
+
Ethylene (C2H4 )
Hybridize
Acetylene (C2H2)
MOLECULAR GEOMETRY
Predicted using the valence bond approach where the directional
properties of the orbitals involved in bonding are taken into account.
Prediction for a specific molecule:
01 The molecular formula is inspected to see how many
atoms (A) are bonded to the central atom (C).
02 The orbital condition of C is determined.
03 The geometry is decided based on the molecular formula
type and orbital conditional.
CA 2 sp
CA 2 sp3
CA 3 sp 2
linear angular trigonal pyramidal trigonal planar
CA 3 sp3
CA 4 sp3
CA 4 dsp 2
CA 5 sp3d
2 tetrahedral square planar trigonal bipyramidal octahedral
CA 6 sp3d
Structure
Organic Compounds Inorganic Compounds
Structures are of varying Structures are simple.
complexities.
Physical Properties
Organic Compounds Inorganic Compounds
Exist as gases, liquids, and Exist predominantly as solids
solids at room temperature. at room temperature.
Have low boiling and melting Have high boiling and melting
points. points.
Solutions are nonelectrolytes. Solutions are strong electrolytes.
Chemical Properties
Organic Compounds Inorganic Compounds
Easily affected by heat, many Not easily affected by heat,
of which are flammable. and mostly flammable.
Exhibit covalent bonding. Exhibit ionic bonding.
Exhibit isomerism. Isomers are limited to a few
exceptions.
Chemical reaction are generally
slow but more specific. Chemical reaction happens fast.
Hydrocarbon
The simplest organic compounds contain only carbon and hydrogen.
Open-Chain Hydrocarbon: Alkanes, Alkenes, Alkynes
Alkanes
Also known as paraffins, They are continuous hydrocarbons with
single covalent bonds only between the carbon atoms. Compounds
with a single bonds only are saturated.
The names of the alkanes all end with the suffix -ane.
The alkanes are arranged from the top to bottom in increasing
number of Cs and Hs.
Isomerism
When there are four or more carbon atoms in an organic compound,
there can be different structural formulas for the same molecular
formula.
Constitutional Isomers
The substances that have the same molecular formula but different
structural formula.
The Hydrogen Derivatives
Hydrocarbon Derivatives
Halogen-containing Compounds
Aliphatic Halides
Organic compounds containing the halogen atom bonded to a simple
aliphatic group.
Polyhaloalkanes
Compounds obtained by replacing two or more H atoms in a
hydrocarbon with halogen atoms.
Aromatic Halides
Compounds in which the halogen atom is bonded to the ring C of a
planar, conjugated, cyclic group of ArX.
Oxygen-containing Compounds
Alcohols and Phenols
Alcohols are derivatives in which one or more H atoms in aliphatic
hydrocarbons have been replaced by hydroxyl groups. Phenols are
compounds in which one or more H atoms in the aromatic nucleus
have been replaced by OH groups. Aromatic alcohols are compounds
that the OH group has replaced an H atom in a side chain.
Ethers
Alkyl oxides, two alkyl radicals are attached to an oxygen atom.
Derivatives of the alcohols in which the hydrogen atom of the OH group
has been replaced by an alkyl (R-) group.
Nitrogen-containing Compounds
Amines
Have amino functional group. They are soluble in water and more basic
than ammonia.
Sulfur-containing Compounds
Thiols
It is the sulfur analog of alcohol. Sulfur equivalents of RO-H.
Thioethers
It is the S analogs of ethers which are oxidize readily.
Metal-containing Compounds
Organo-metallic
Compunds contain a metal bound to a C by linkage which may be either
covalent or ionic.
CHAPTER 16
Polymers
Polymer Properties
Thermoplastic Thermosetting
Soften on reheating. Become infusible solids and
Formed when monomer do not soften on reheating
molecules join end to end in Macromolecules in which the
a linear chain with little or no polymeric chains are cross-
cross-linking between chains. linked to form a network
structure.
Addition Polymers
Formed from unsaturated monomers undergoing polymerization.
example: Polyisoprene rubber
Neoprene
Used in gasoline pump hoses and rubber tubings in automobile engines.
Condensation Polymers
Formed by the head-to-jail joining of monomer units.
Accompanied by the loss of water from the reacting monomers and
the formation of water as a reaction product
Polyesters are polymers consisting of many repeating units of
dicarboxylic acids and dihydroxy alcohols joinedby ester bonds.
Polyester Formation
Polyethylene Terephthalate
Most common synthetic polyester.
Used in films, clothing, tires, plastic drink bottles, soda, ore
vegetable oils.
Sold under the trade names of Dacron, Mylar, and Terylene.
Polyamide Formation
Nylons are polyamides produced by the reaction of diamines with
diacids.
Kevlar
Designed by Stephanie L. Kwolek.
Produced by the reaction of an aromatic dicarboxylic acid with an
aromatic diamine.
Known for its great strength but are lightweight and flame resistant.
CHAPTER 17
Biomolecules
01 Carbohydrates
Defined as an aldehyde or ketone derivatives of polyhydric
alcohols.
Referred to as saccharides, from the Greek word sakkharon
meaning something sweet.
Named using the ending -ose.
Monomers are monosaccharides.
note:
Monosaccharides
- Simplest group of carbohydrates.
- Consist of single saccharide units.
- Subclassified as trioses, tetroses, pentoses, hexoses, or heptoses.
- Usually crystalline, have a sweet taste and readily soluble in water.
Glucose
Fructose
Galactose
Oligosaccharides
- Carbohydrates that contain 2-10 monosaccharides.
- Most common are the disaccharides.
02 Lipids
Organic molecules of varying chemical composition grouped on
the basis of their solubility in nonpolar solvents.
Monomers are glycerol and fatty acids.
Simple Lipids
Neutral Lipids
Waxes
Simple Proteins
- Yield primarily amino acids upon hydrolysis.
example: Egg albumin
Conjugated Proteins
Derived Proteins
Structures of Proteins
Primary
- Given by its amino acid sequence. Tertiary
Secondary
Secondary
- Specific geometric orientation of the
amino acids in space. Primary
Alpha helix and beta pleated sheet Quartenary
Tertiary
- Characteristic conformation of a protein molecule.
Globular structure
Quartenary
- Shape of entire complex molecule with two or more subunits.
Essential Amino Acids
- Not synthesized by the body
- Indispensable for the biological needs of the body
Non-essential Amino Acids
- Produced by the body.
04 Nucleic Acid
Chain-like molecules with very large molecular masses.
Monomers are nucleotides.
Contains the blueprint of life.
note:
Deoxyribonucleic acid and Ribonucleic acid
Nitrogen-containing
bases are pyrimidines
J.D. Watson and F.H. Crick and purine.
1953
Proposed structure of DNA consists of two helical polynucleotide
chains that are connected by hydrogen bonding between pairs.
DNA
- Deoxyribonucleic Acid
- Carrier of genetic information.
- Stores the instruction for making every living thing.
Adenine, Guanine, Thymine, Cytosine
A-T and C-G