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Cell Ultrastructure

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2A: Cell Ultrastructure

• Eukaryotic cells: Plant cells + Animal cells

Have membrane enclosed organelles

• Prokaryotes: bacterial cells

Have NO membrane enclosed organelles

Types of microscopes
Light microscope = beam of light

Electron microscope = beam of electrons and a magnetic field

Why to use microscopes?


• Improve magnification: how much an image is compared to its actual size
under a microscope

M = observed size (image) / actual size

The higher magnitude of magnification = the larger is the image.

Magnification by 10x is larger than by 5x

• Improve resolution: the minimum distance between any two points that are
seen as different

The smaller the magnitude of resolution (numerical measure) the higher is the
resolving power

Example: 5 micrometer resolution is better than 10 micrometer resolution


• When using a microscope, you need to stain the specimens

à to highlight the details and structures of a cell


Example: using acetic orcein stain to highlight chromosomes during mitosis

à to add a contrast

• Electron microscope uses a beam of electrons à shorter wavelength à


higher resolving power

• Light microscope uses a beam of light à longer wavelength à lower


resolving power

Question:
An experiment was conducted to view ribosomes in animal cells.

Explain why an electron microscope and not a light microscope should be used in
this experiment. (2)

• Ribosomes are very small


• Light microscopes have limited magnifying and resolving powers
Organelle Structure Function Drawing
1. Nucleus • Double Stores DNA that
membrane codes for making
• Nuclear pores proteins
• Nucleolus
inside

2. Nucleolus • No membrane Making ribosomes


Shown within the diagram of a nucleus
• Dark dense part
3. Rough • Flattened sacs Protein synthesis
endoplasmic • Has ribosomes (translation on
reticulum (80S) ribosome), folding
(rER) • Single and packaging inside
membrane vesicles

4. Smooth • Tubular sacs Lipid synthesis and


endoplasmic • Single packaging
reticulum membrane
(sER) • (No ribosomes)

5. Golgi • Cisternae are Protein modification


apparatus not connected
to each other
• Usually of
decreasing size
• Vesicles around
• Single
membrane
6. Mitochondria • Double Aerobic respiration
membrane to release ATP
• Inner
membrane
folded into
cristae
• Matrix
containing
enzymes
• 70S ribosomes
• Loop of DNA
7. Centrioles • Hollow Produce spindle
cylinders at during cell division
right angles to
each other
• No membrane
8. Lysosomes Membrane sacs Cell apoptosis
with digestive (programmed cell
enzymes death)

Electron micrographs

Nucleus Mitochondria

Lysosome Rough endoplasmic reticulum


Golgi apparatus Centrioles

Centriole Centrioles

Organelles found only in Animal cells vs found only in plant cells:


Animal cells only Plant cells only
• Centrioles • Cellulose cell wall
• Lysosomes • Chloroplast
• Cilia • Starch granules
• Glycogen droplets
Ribosomes

Two subunits of proteins (one large, one small) and rRNA

• 80 S à eukaryotic cells in cytoplasm + rough endoplasmic reticulum


• 70 S à prokaryotic cells + inside mitochondria and chloroplast in eukaryotic cells

RIBOSOMES HAVE NO MEMBRANES

========

Double membrane Single membrane No membrane


Rough endoplasmic
Nucleus (most dense) Nucleolus
reticulum (rER)
Smooth endoplasmic
Mitochondria Centrioles
reticulum (sER)
Chloroplast Golgi apparatus Ribosomes

Lysosome

More membranes = more dense organelles

Dense = bottom of the test tube


Light = top of the test tube

Fractionation experiments
Centrifuge cells and separate the organelles by their densities
Most bottom: nucleus à mitochondria / chloroplast

Middle: Rough endoplasmic reticulum (rER)


Smooth endoplasmic reticulum (sER)
Golgi apparatus
Lysosome

Top: ribosomes,

Protein Trafficking

Describe the role of the nucleus, the rough endoplasmic reticulum and Golgi apparatus in the
synthesis of glycoproteins (carbohydrate group + protein) (5)

Nucleus has the genetic code that gives the code for synthesis of proteins
Proteins are synthesized on the surface of the ribosomes on the rough endoplasmic reticulum
Proteins are folded inside the cavity of the rER
Proteins are packaged in vesicles from rER to Golgi apparatus
Vesicles fuse with Golgi apparatus where a carbohydrate group is added to the protein to make
glycoproteins

Lipoprotein
Nucleus has the genetic code that gives the code for synthesis of proteins
Proteins are synthesized on the surface of the ribosomes on the rough endoplasmic reticulum
Proteins are folded inside the cavity of the rER
Proteins are packaged in vesicles from rER to Golgi apparatus
Vesicles fuse with Golgi apparatus where a lipid group is added to the protein to make
lipoprotein
Pulse-chase experiments

Radioactive amino acids were supplied to pancreatic cells. Straight after, a large dose of non-
radioactive amino acids was supplied. The quantity of radioactive amino acid in different parts of
the cell was monitored over time. The results are shown below.

Pancreatic cells + radioactive amino acids = radioactive proteins that can be tracked

• Amino acids will be joined together to form a polypeptide chain during translation = high
radioactivity in rER

• Radioactive proteins will leave in a vesicle to fuse with the Golgi apparatus

• Vesicles fuse with Golgi apparatus (radioactivity in GA to increase)

• As vesicles leave the GA, the radioactivity drops in GA and increases in secretory
vesicles

Why does radioactivity drop in Golgi apparatus to 50% from 100% in rER.
• Not all of the radioactive proteins go the Golgi apparatus
• Background losses in radioactivity
• This experiment did not measure the radioactivity in vesicles in transit between rER and
Golgi apparatus
Question
One way to investigate protein trafficking is to use radioactive amino acids.
A tissue was soaked in a solution of radioactive amino acids for a short period of time and then
transferred to a solution with non-radioactive amino acids.
The table below shows the amount of radioactivity as a percentage of the total radioactivity of
the total radioactivity in the cells of this tissue, found in three organelles, at three different times
being transferred to the non-radioactive solution.

Percentage of total radioactivity in cells after tissue


Organelle transferred to non-radioactive solution
5 min 10 min 45 min
Vesicles 0 5 60
rER 80 10 5
Golgi apparatus 10 80 30
Total radioactivity 90 95 95

(a) The vesicles containing radioactivity can either come from rER or the Golgi apparatus.
Using evidence from the table, suggest whether these vesicles come from rER or the
Golgi apparatus.

• Vesicles come from Golgi apparatus


• Radioactivity increases in rER and then decreases but does not increase in
vesicles
• While, when radioactivity decreased in Golgi apparatus and increased at 45
minutes in vesicles, so this vesicle was pinched off the Golgi apparatus

(b) Suggest an explanation for the difference in the total radioactivity between 5 minutes and
10 minutes.

It is possible due to the large time intervals, some radioactive proteins are inside vesicles in
transit between rER and GA but were not measured at 5 minutes.
The total % of radioactivity does not reach 100% because of several reasons: background
losses in radioactivity, or some vesicles are lost in between rER and GA.

(c) Comment on the reliability of the data collected.

Experiment was not repeated.


Very large time intervals.

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