Supplementary Material: Azole-Based Inhibitors of P. Falciparum LDH
Supplementary Material: Azole-Based Inhibitors of P. Falciparum LDH
Supplementary Material: Azole-Based Inhibitors of P. Falciparum LDH
falciparum LDH
Supplementary Material
In order to establish a structure-activity relationship (SAR) for the azole family, a wide
range of derivatives were prepared. The parent compounds (hydroxyacid azoles) and their
hydroxyesters derivatives from the oxadiazole (OXD1) and isoxazole groups (IOA1-
IOA3, IOA6 and IOA8), were prepared using the methods previously described in the
literature, with slight modifications to facilitate gram scale process (see references in
Table S1). The compoundsfrom the thiadiazole (TDA1 - TDA2) and triazole groups
(TRZ1-TRZ5), were acquired from external sources for screening purposes. The
experimental procedures for the synthesis of novel compounds described in the text, and
reflux. The progress of the reaction was monitored by HPLC. After 8 hours of heating, the
starting material was consumed. The reaction mixture was cooled to room temperature and
the solvent was removed under reduce pressure. The mixture was re-dissolved in water
(pH of the solution = 11) and extracted with Et2 O to remove any non acidic residue
1
Azole-based inhibitors of P. falciparum LDH
formed in the reaction. The aqueous phase was acidified to pH=1 using concentrated HCl
and then extracted with Et2 O. The combined ether extracts were washed with brine and the
solvent removed under reduce pressure to yield 1.04 g of the expected compound as a
white solid (Yield 50%). 1 H-RMN (DMSO, δ): 1.30 (t, J=7.15, 3H), 4.36 (q, J=7.15, 2H),
13.4 (bs, 1H, OH). 13 C-RMN (DMSO, δ): 14.0, 62.3, 140.5, 157.34, 162.8.
(OXD6 )
After 3H of reaction no starting material was detected. The precipitant formed during the
reaction was filtered, and the mother liquor was concentrated under reduced pressure,
obtaining a thick melange that was re-dissolved in EtOAc and extracted with NH4 Cl (1N).
The combined organic extracts were washed with brine, dried over Na2 SO4 , and
concentrated under reduced pressure. The yellowish residue obtained was purified by flash
recrystallisation with ethyl ether: hexane. Finally 150 mg of the pure expected compound
was obtained in a 24% yield of a white crystalline solid. 1H-RMN (DMSO, δ): 5.29 (s,
2
Azole-based inhibitors of P. falciparum LDH
2H), 7.44 (d, 1H, J=8.25), 7.65 (d, 1H, J=8.25), 7.73 (s, 1H). 13 C-RMN (DMSO δ): 64.3,
cooled to 0ºC and, under stirring, 20 ml of MeONa (30% in MeOH) were slowly added.
The formation of an abundant white precipitate (NaCl) was observed during the
dissolved in 100 ml of methanol were added to the reaction media. After 25 min of
reaction no starting material could be detected by TLC. The product was purified by
initially filtering the NaCl formed, and removing the methanol used as solvent under
reduced pressure. The brown mixture obtained was redissolved in a 1:1 mixture of ethyl
acetate and NH4 Cl, and the phases were separated. The organic phase was conserved and
the aqueous layer was treated with concentrated HCl to adjust the pH to pH=4. The
mixture was further extracted with ethyl acetate (3x200 ml) to remove any traces of the
isomer from the media. The combined organic extracts were collected, washed with brine,
dried over Na2 SO4 and evaporated under reduced pressure to yield a mixture that
contained the major isomer, which was purified by crystallisation from methanol to yield
45% of IOA7. 1 H-RMN (DMSO, δ): 2.52 (t, s, 3H), 3.73 (s, 3H). 13 C-RMN (CD3 OD, δ):
14.6, 61.2, 88.3, 152.5, 163.1, 172.1 The corresponding data are given below. The
aqueous phase that was originally adjusted to pH=4 contained the minor isomer, which
3
Azole-based inhibitors of P. falciparum LDH
was isolated in 37% yield after acidification to pH=1: IOA3e: 1 H-RMN (DMSO, δ): 2.28
All ethers were synthesised from the ethyl esters of the corresponding parent compounds.
The synthesis of each compound required two steps: first, the introduction of the
substituent in the hydroxyl functional group, and secondly the saponification of the ester
Using an oven-dried two-neck flask equipped with a reflux condenser and flushed with N2
after the addition of 2.5g of Cs2 CO3 (3.81 mmol), a solution of IOA6 (600 mg, 3.81
mmol) in 10 ml of acetone was added to the base and the heterogeneous mixture was
stirred and heated at 60ºC over one hour (release of CO2 was observed during the
generation of the anion). After this period, the mixture was left to reach room temperature
and 356 ul of MeI (5.72 mmol) was added, and the mixture was stirred for an additional
hour. The progress of the reaction was monitored by TLC. After 1 hour at the same
temperature all the starting material had been consumed. The expected compound was
isolated by addition of 20 ml of saturated NH4 Cl and extracted with ethyl ether (3x50
mL). The combined organic extracts were washed in brine, dried over MgSO4 and the
solvent was evaporated under reduced pressure. The crude obtained was purified by flash
4
Azole-based inhibitors of P. falciparum LDH
chromatography (Hexane: AcOEt, 9:1), to yield the expected compound in 64% yield. 1 H-
NMR (CDCl3, δ): 1.33 (t, J=7.14, 3H), 4.31(s, 3H), 4.31, (q, J=7.14, 2H), 8.67 (s, 1H).
13
C-NMR (CDCl3, δ): 14.2, 57.9, 61.0, 105.2, 160.2, 164.6, 169.4
In a dried oven flask, flushed with N2 and under inert atmosphere (N 2 ), was placed a
solution of IOA6 (300 mg , 1.9 mmol) in 5ml of dry dichloromethane. The solution was
cooled to 0ºC and 1.9 mL of TMSCHN 2 (3.81 mmol of 2M solution in hexane) was added
drop-wise to the mixture. The release of N2 was observed during the reaction. The
progress of the reaction was monitored by TLC and after 10 min of reaction no starting
material was detected. The reaction was stopped by evaporation of the solvent under
reduced pressure and the crude directly purified by flash chromatography (Hex: AcOEt,
10:1). The expected compound was isolated as the less polar compound in a 45% yield.
1
H-NMR (CDCl3, δ): 1.33 (t, J=7.14, 3H), 3.55 (s, 3H), 4.31, (q, J=7.14, 2H), 8.42 (s, 1H).
13
C-NMR (CDCl3, δ): 14.2, 32.9, 61.1, 108.6, 160.2, 163.0, 175.4
anhydrous THF and under N2 atmosphere, 1.04 molar equivalents of PPh3 were added.
The reaction mixture was cooled to 0ºC, before the consecutive addition of 1 molar
5
Azole-based inhibitors of P. falciparum LDH
alcohol. After addition of the alcohol the cooling bath was removed and the reaction
mixture was left stirring overnight. The solvent was removed under reduced pressure. The
crude obtained was washed with hexane and the remaining solid was directly purified by
(OXD8e)
This compound was prepared following the general method A starting from 119 mg of
OXD7 (0.75 mmol) and 100 mg of the 3-phenyl-2-propen-1-ol (cinnamyl alcohol, 0.75
mmol) and the corresponding amounts of PPh3 (273mg, 0.78 mmol) and DEAD (130 mg,
0.75 mmol). The crude from the reaction mixture was purified by flash chromatography,
using a gradient from AcOEt: Hex (1:10) to pure AcOEt. Yield 42%. 1 H-NMR (CDCl3 δ):
1.45 (t, J=7.13, 3H), 4.48 (q, J=7.14, 2H), 5.07 (dd, J1 =6.54, J2 =1.28, 2H), 6.45 (dt,
J1 =15.93, J2 =6.40, J3 =6.40, 1H), 6.83 (d, J=15.74, 1H), 7.29-7.44 (m, 5H).
(OXD9e).
OXD9e was prepared following the general method A starting from 150 mg of OXD7
(0.95 mmol) and 133 mg of 4- methoxy benzyl alcohol (0.95 mmol) and the corresponding
amounts of PPh3 (343mg, 0.99 mmol) and DEAD (165 mg, 0.95 mmol). The crude from
the reaction mixture was purified by flash chromatography, using a gradient from AcOEt:
6
Azole-based inhibitors of P. falciparum LDH
Hex (1:3) to pure AcOEt. Yield 49%. 1 H-NMR (CDCl3, δ): 1.40 (t, J=7.14, 3H), 3.82(s,
3H), 4.44, (q, J=7.14, 2H), 5.36 (s, 2H), 6.92, (d, J= 8.8, 2H), 7.43, (d, J= 8.8, 2H). 13 C-
NMR (CDCl3, δ): 14.0, 55.3, 62.3, 74.4, 114.0, 126.3, 130.4, 139.6, 157.2, 160.2, 163.8 .
Over a cooled (0ºC) solution of the starting hydroxyester in methanol (2M solution), 4
equivalents of LiOH (1.25 N) were slowly added while stirring and the mixture was left to
reach room temperature on its own. The reaction was monitored by TLC, and usually a
period of 40 to 60 min was enough to complete the hydrolysis. The isolation procedure
was performed by removal of the methanol under reduced pressure, extraction with
precipitate formed was filtered as the pure acid. When a significant precipitate was not
formed after acidification, the aqueous phase was extracted several times with AcOEt
(3x50 ml). The organic extracts were combined, washed with brine and dried over
Na2 SO4 . The expected compounds were obtained as pure compounds and usually did not
isoxazolecarboxilic acid (IOA4e) (0.31 mmol) were hyd rolysed over 90 minutes. A
further chromatographic purification was necessary (Hex: AcoEt (3:1) to AcOEt) to obtain
7
Azole-based inhibitors of P. falciparum LDH
38 mg of the pure expected compound in 60% yield. 1 H-NMR (DMSO, δ): 2.93 (s, 3H),
9.09 (s, 1H), 13.0 (s, 1H). 13 C-NMR (DMSO, δ): 33.6, 108.1, 160.3, 167.0, 171.3 .
acid, ethyl ester (IOA5e) (0.31 mmol), were hydrolysed over 90 minutes. A furthe r
of the pure expected compound in 60% yield. 1 H-NMR (DMSO, δ): 3.93 (s, 3H), 9.29 (s,
1H), 13.0 (s, 1H). 13 C-NMR (DMSO, δ): 57.5, 105.0, 160.9, 166.7, 169.1
oxadiazole-3-carboxylic acid, ethyl ester (OXD8e) (0.16 mmol), were hydrolysed over 90
min in a 64% yield. 1 H-RMN (CD3 OD δ): 5.04 (dd, J1 =6.42, J2 =1.29, 2H), 6.50 (dt,
J1 =15.94, J2 =6.42, J3 =6.42, 1H), 6.85 (d, J=15.94, 1H), 7.25-7.47 (m, 5H). 13 C-RMN
(CD3 OD, δ): 74.4, 122.9, 127.8, 129.4(4xC), 129.7 (4xC), 136.9, 137.5, 141.7, 159.8,
165.3.
8
Azole-based inhibitors of P. falciparum LDH
oxadiazole-3-carboxylic acid, ethyl ester (IOA9) (0.31 mmol), were hydrolysed over 90
AcOEt) to obtain 38 mg of the pure expected compound in 60% yield. 1 H-RMN (DMSO,
δ): 5.37 (s, 2H), 3.81 (s, 3H), 6.92, (d, J= 8.8, 2H), 7.44, (d, J= 8.8, 2H). 13 C-RMN
(DMSO, δ):55.3, 74.4, 113.0 (4xC), 126.5, 129.4 (4xC), 139.9, 157.5, 160.3, 165.8.
carboxylic acid ethyl ester (TDA3e) (0.16 mmol), were hydrolysed over 90 min in a 60%
yield with a purity >95% (HPLC). 1 H-RMN (CD3 OD, δ): 4.13 (s, 3H). 13 C-RMN (CD3 OD,
group
To an oven-dried flask, flushed with N2 and containing 3Å molecular sieves, were added
20 ml of dry THF, and 563 mg of 1,1' carbonyl diimidazole. The mixture was heated to 65
9
Azole-based inhibitors of P. falciparum LDH
ºC and left stirring for 4 hours. After this period the mixture was cooled to room
temperature and 362 uL of methyl sulphonamide (3.5 mmol) and 524 µL of 1,8-
diazabycyclo-[5,4,0]-7-undecene (3.5 mmol) were added. The mixture was heated again to
65ºC overnight. After this period, the crude was diluted with ethyl acetate and filtered over
Celite®. The Celite ® was carefully washed with AcOEt and methano l until all of the
substrate had been eluted from the silica (TLC). The combined organic extracts were dried
over Na2 SO4 , and the solvent removed under reduced pressure. The oily residue obtained
was further purified by flash chromatography to isolate a ma in fraction that contained the
expected compound together with the amine used as base. This mixture was redissolved in
HCl (1N) and extracted with ACOEt (2x100 mL). The aqueous phase was discarded. The
organic solvent was removed under reduced pressure and the expected compound was
finally isolated as the lithium salt by treatment with a basic solution of NaOH (pH=6-7)
and subsequent lyophilisation. The sulphonamide OXD10 was obtained with >90% purity
To an oven-dried flask, flushed with N2 and containing 3Å molecular sieves, were added
THF, and 563 mg of 1,1' carbonyl diimidazole. The mixture was heated at 70 ºC and left
stirring for 2 hours. After this period the mixture was cooled to room temperature and 204
10
Azole-based inhibitors of P. falciparum LDH
undecene (2.14 mmol) were added. The mixture was then heated to 65ºC overnight. After
this period the solvent was removed under reduced pressure and the oily residue was
partitioned in dichloromethane and NH4 Cl (1N). The aqueous phase was acidified to pH=
3 and then extracted with AcOEt (4x75ml). The different organic extracts were collected,
dried over Na2 SO4 and the solvent was removed under reduced pressure to yield a
yellowish residue that was macerated with acetonitrile to yield 20 mg of a white solid with
purity > 95 % (HPLC) in a 10% yield. The yield of the reaction was not improved since
the compound was used just for screening purposes. 1 H-RMN (CD3 OD, δ): 3.34 (s, 3H,
9.03 (s, 1H). 13 C-RMN (CD3 OD δ): 41.7, 107.2, 160.5, 166.2, 168.4
To an oven-dried flask, flushed with N2, were added 140mg of 3-hydroxy- isooxazole-4-
carboxylic acid (1.08 mmol) and 2 mL of thionyl chloride. The mixture was heated at
reflux under stirring for 3 hours. After this period the mixture was concentrated at reduced
pressure and the residue containing the corresponding acid chloride was redissolved in
anhydrous THF (5mL). This solution was added while stirring to a cooled (0ºC) solution
of 360 mg of methyl hydroxylamine (4.4 mmol) and 900 uL of triethylamine (6.5 mmol)
in 5ml of dry THF. The reaction mixture was then left to reach room temperature and
stirred overnight. The expected compound was isolated by acidification of the reaction
mixture with HCl (1N) and extraction with dichloromethane (3x50mL). The organic
extracts were combined, washed with brine and dried over Na2 SO4 . The solvent was
removed under reduced pressure to obtain a solid that was purified by flash
11
Azole-based inhibitors of P. falciparum LDH
30% yield with a purity >95% (HPLC). 1 H-RMN (CD3 OD, δ): 3.34 (s, 3H, CH3 ), 8.95 (s,
1H, CH). 13 C-RMN (CD3 OD δ): 36.2, 102.7, 163.8, 164.2, 171.7.
12
Azole-based inhibitors of P. falciparum LDH
O
Strelenko, Yu. A.; Sheremetev, A. B.; Khmel'nickii, L. I. Monosubstituted
H 2N
OH
OXD2 N N furazans. I. NMR investigations. Khimiya Geterotsiklicheskikh Soedinenii
O
O Bought from external sources: Catalog Name: Chemical Block Building Blocks
OH
OXD4 N N Registry Number: 88598-08-7 , CHEMCATS
O
13
Azole-based inhibitors of P. falciparum LDH
O H. Wieland, Z. Kitasato and S. Utzino. Liebigs Ann. Chem. 478 (1930), p. 43
HO
OH
OXD5 N N
O
O Described in Section S1.2
HO Cl
O
OXD6 N N
O Cl
O Willson, Timothy M.; Charifson, Paul S.; Baxter, Anthony D.; Geddie, Nora G.
HO
OEt
N N
Bone targeted drugs. 1. Identification of heterocycles with hydroxyapatite affinity.
OXD7 O
Bioorganic & Medicinal Chemistry Letters (1996), 6(9), 1043-1046. Also
O
Described in Section S1.6, S1.12
O
OH
OXD8
N N
O
O
O Described in Section S1.8, S1.9, S1.13
O
OXD9 N
O
N
14
Azole-based inhibitors of P. falciparum LDH
H O Described in Section S1.15
O N
S
Me
O
OXD10 HO
N
N O
15
Azole-based inhibitors of P. falciparum LDH
Table S1B: Synthesis of 1,2/1,5-isoxazole (IOA) series:
O Willson, Timothy M.; Charifson, Paul S.; Baxter, Antho ny D.; Geddie, Nora G. Bone targeted
IOA1 HO
OH
N drugs. 1. Identification of heterocycles with hydroxyapatite affinity. Bioorganic & Medicinal
O
Chemistry Letters (1996), 6(9), 1043-1046
O Willson, Timothy M.; Charifson, Paul S.; Baxter, Anthony D.; Geddie, Nora G. Bone targeted
HO
IOA2 OH
N drugs. 1. Identification of heterocycles with hydroxyapatite affinity. Bioorganic & Medicinal
O
Chemistry Letters (1996), 6(9), 1043-1046
16
Azole-based inhibitors of P. falciparum LDH
O Described in Section S1.4, S1.11
IOA5 O
H3C OH
N
O
O Willson, Timothy M.; Charifson, Paul S.; Baxter, Anthony D.; Geddie, Nora G. Bone targeted
HO
IOA6
OEt drugs. 1. Identification of heterocycles with hydroxyapatite affinity. Bioorganic & Medicinal
N
O Chemistry Letters (1996), 6(9), 1043-1046
Section S1.3
O Willson, Timothy M.; Charifson, Paul S.; Baxter, Anthony D.; Geddie, Nora G. Bone targeted
IOA8 HO OEt
drugs. 1. Ident ification of heterocycles with hydroxyapatite affinity. Bioorganic & Medicinal
O
N
Chemistry Letters (1996), 6(9), 1043-1046
O
HO
IOA9
N Described in Section S1.17
N S O
O O Me
17
Azole-based inhibitors of P. falciparum LDH
Me Described in Section S1.18
IOA10 O N
OH
HO
N O
18
Azole-based inhibitors of P. falciparum LDH
O J.M. Ross and W.C. Smith. J. Am. Chem. Soc. 86 (1964), p. 2861
TDA1 HO
OH
N N
S
O J.M. Ross and W.C. Smith. J. Am. Chem. Soc. 86 (1964), p. 2861
TDA3 H3C O OH
Modified as described in Section 1.14
N N
S
19
Azole-based inhibitors of P. falciparum LDH
TRZ1 O Screening Compound but the synthesis is described in: Y. A. Rozin, E. A. Saveleva, Y. Y.
HO
OH
N N Morzherin, W, Dehaen, S. Toppet, L. Van Meervelt, V. A. Bakulev, J. Chem. Soc, Perkin
N
O
TRZ2 GSK Screening Compound
HO
OH
N N
N
Ph
TRZ5 N Scifinder Search: Katritzky, Alan R.; Zhang, Yuming; Singh, Sandeep K. 1,2,3-triazole
O
N
N
HO H formation under mild conditions via 1,3-dipolar cycloaddition of acetylenes with azides.
21
Azole-based inhibitors of P. falciparum LDH
Heterocycles (2003), 60(5), 1225-1239.
22