Biodegradation of Micro-Polyethylene Particles by Bacterial
Biodegradation of Micro-Polyethylene Particles by Bacterial
Biodegradation of Micro-Polyethylene Particles by Bacterial
Chemosphere
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h i g h l i g h t s
a r t i c l e i n f o a b s t r a c t
Article history: In this study, we investigated the decomposition of micro-sized polyethylene (PE) by mesophilic mixed
Received 6 August 2018 bacterial culture isolates obtained from a municipal landfill sediment. Among these, Bacillus sp. and
Received in revised form Paenibacillus sp. were more specifically enriched in the non-carbonaceous nutrient medium (i.e., Basal
17 January 2019
medium) as they were the most dominant species when they were exposed to PE microplastics. They
Accepted 27 January 2019
Available online 28 January 2019
reduced the dry weight of particles (14.7% after 60 d) and the mean particle diameter (22.8% after 60 d;
obtained by field-emission scanning electron microscopy analysis). In the gas chromatography-mass
Handling Editor: Y Liu spectrometer analysis of biologically aged particles, the amount and types of organic contents eluted
from the PE microplastics were far lower in the early decomposition phase; however, they increased in
Keywords: the later phase. Thermal gravimetric analysis showed that the aged particles had higher thermal stability
Microplastics at temperatures greater than 570 C compared to the control, thereby suggesting that microplastics were
Polyethylene degraded by enzymatic chain scission, which could in turn be ascribed to the greater refractory fractions
Bacillus sp. of aged particles remaining at a high combustion temperature. It was further verified that PE particles
Paenibacillus sp.
could be biologically utilized as a sole carbon source and broken down during the test period.
Biodecomposition
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528 S.Y. Park, C.G. Kim / Chemosphere 222 (2019) 527e533
2.2. Isolation and identification of mixed bacterial culture Twenty single colonies were obtained from four bacterial cul-
tures (A2, A5, B2, and B5 indicating the sampling site by letter and
A number of sediment samples were collected from a decom- depth in meters from the ground surface) by streaking into LB agar
missioned landfill site, as shown in Fig. 1, located in Incheon, Korea plates (containing 1.5% agarose). Extraction of the genomic DNA
S.Y. Park, C.G. Kim / Chemosphere 222 (2019) 527e533 529
from each of the single colonies was conducted using a HiGene™ broth were filtered out using a 0.45 mm cellulose acetate membrane
Genomic DNA Prep Kit (BIOFACT, Korea). The bacterial 16S rDNA filter (ADVANTEC®, Tokyo Roshi Kaisha Ltd., Japan). Additionally,
was amplified using the primer sets of 27F (50 -AGA GTT TGA TCM the filtrate was collected to measure SCOD using the same pro-
TGG CTC AG-30 ) and 1492 R (50 -TAC GGY TAC CTT GTT ACG ACT T-30 ). cedure as that described in Section 2.2 to monitor temporal varia-
Amplifications were performed using a thermal cycler instrument tion in organic contents that possibly originated from the break-up
(Tprofessional Thermocycler, Biometra, Germany) in a final volume of the mother compound after the incubation progressed. At the
of 25 mL, with each containing 2 Taq Reaction Buffer, 1 mM of end of the test, the bacterial films that colonized around the surface
dNTPs, 1 mM of each primer, 1.5 U of Taq polymerase (BIOFACT™ of the plastic particles were washed with 2% (w/v) sodium dodecyl
TaqBasic DNA Polymerase, BIOFACT, Koreas), and 3 mL of template sulfate (SDS) solution for 4 h and dried in an oven at 50 C over-
DNA. The PCR conditions were 1 cycle (95 C for 15 min) for initial night. The extent of the amount degraded during the test period
denaturation, 30 cycles (95 C for 20 s, 50 C for 40 s, and 72 C for was determined by the amount of dried polymer weight compared
5 min) for denaturation, annealing, and extension, and 1 cycle before and after the test using an analytical balance (HR-200, AND,
(72 C for 5 min) for the final extension of the amplified DNA. Next, Korea) with a readability of 0.0001 g. From this, the percentage
the PCR products were purified and sequenced with a primer set of weight loss of the PE microplastics due to degradation was deter-
518F (50 -CCA GCA GCC GCG GTA ATA C-30 ) and 805 R (50 -GAC TAC mined using Eq. (2):
CAG GGT ATC TAA TC-30 ) using a BigDye® Terminator v3.1 Cycle
Sequencing Kit through an automatic sequencer (ABI 3730XL DNA W0 W
% Weight loss ¼ 100 (2)
Analyzer, Applied Biosystems, USA). A similarity search was con- W0
ducted using the BLAST database of the National Center for
Biotechnology Information, from which more than 95% matched Where W0 is the initial weight of the PE microplastic (g) and W is
bacterial strains were selected. Finally, a phylogenetic tree was the residual weight of the PE microplastic (g).
constructed using the neighbor-joining method supplied by MEGA
7.0 software (https://www.megasoftware.net). 2.6.2. FE-SEM analysis of PE microplastics
The morphology and particle size distribution of the degraded
PE microplastics were compared to those of raw PE microplastics
2.4. Screening of bacterial strains for PE degradation
using a FE-SEM (S-4300SE, Hitachi High Technologies Co., Japan).
For this, they were sputter coated with a platinum layer under an
The bacterial isolates were screened out according to their
argon atmosphere followed by visualization using a SEM at a
ability to make use of PE microplastics as a sole carbon source. For
magnification of 40 (for particle size distribution analysis) and
this, a mixed bacterial culture was grown on Basal medium con-
8000 (for observing surface morphology, including the bacterial
taining 2.34 g of K2HPO4, 1.33 g of KH2PO4, 1.0 g of (NH4)2SO4, 0.5 g
colonization on the microplastic surface). Finally, the particle size
of NaCl, 0.2 g of MgSO4$7H2O, and 1 mL of trace element solution
distribution was obtained through the image processing software
(21.8 mg L1 CoCl2$6H2O, 21.6 mg L1 NiCl2$6H2O, 24.6 mg L1
Image Pro Plus 6.0 (Media Cybernetics, USA).
CuSO4$5H2O, 1.62 g L1 FeCl3$6H2O, 0.78 g L1 CaCl2, and
14.7 mg L1 MnCl2$4H2O) per liter of distilled water (Jeon and Kim,
2.6.3. FTIR analysis of microplastic polymers
2015), which was amended with 1% (w/v) sterilized PE micro-
The changes in the surficial structure of the microplastic poly-
plastics. The microorganisms were incubated for a period of 20 d at
mers after incubation were analyzed using FTIR spectroscopy
30 C under aerobic conditions. Subsequently, the incubated cul-
(VERTEX 80V, Bruker, Germany) in the frequency range of 4000-
tures were cultivated in the LB agar plate for 24 h at 30 C. In the
400 cm1 with 4 cm1 of scanning mode. It was also conducted for
following, a single colony was each incubated in the same condition
the uninoculated PE microplastic as the control. For this purpose,
as for the previous and then they were identified as described in
100 mg of KBr and 5 mg of dried PE particles were grinded in an
Section 2.3. From this, the number of colonies have been counted to
agate mortar and pelletized using an Atlas™ manual hydraulic
coincidently match to its identification so that the dominant spe-
press (SPECAC Inc., USA), which was used for FTIR spectroscopic
cies should be verified.
analysis. Background scanning of FTIR was conducted under vac-
uum conditions, and it was compared with the FTIR observation of
2.5. Microbial inoculum preparation and assay for PE microplastic the sample. It consequently revealed its own spectrum for the given
degradation sample.
The bacterial strains previously screened as the microplastic 2.6.4. GC-MS analysis
degraders were inoculated into fresh LB broth and allowed to grow To extract organic matters formed around the surface of the PE
in a rotating incubator at 30 C until their population density particles during the test, a procedure suggested in the literature
attained log phase in terms of absorbance intensity of 1.00 ± 0 (Contat-Rodrigo et al., 2001) was modified and implemented. That
0.05 at 600 nm. Ten percent of the strains were inoculated into is, a total of 50 mg of sample was mixed with 10 mL of chloroform
Erlenmeyer flasks containing 100 mL of basal medium in the (99.5%, Daejung Chemicals, Korea) in a 20 mL glass vial and
presence of 100 mg of sterilized PE microplastics. For the negative ultrasonicated in a Branson 5510 apparatus for 2 h in a hot water
control test, an uninoculated basal medium supplemented with PE bath held at 55 C. The residual PE particles were removed using
microplastics was prepared in the same manner as that of the test filter paper (Whatman™ Grade 2 Qualitative Cellulose Filter Paper,
with the addition of 1 mL of 1% (w/v) sodium azide (NaN3, 99%, 8 mm, GE Healthcare Life Science, United Kingdom). The aliquot was
Samchun Chemicals) to prevent any possible growth from the then concentrated up to 1 mL by evaporating chloroform with ni-
medium. All the assays were performed in triplicate. trogen gas purged in a TurboVap® II Automated Solvent Evapora-
tion System (Biotage®, Sweden). The extracts were characterized
2.6. Analytical procedures with a GC-MS (1200 L Single Quadrupole GC-MS system with
3800 GC, Varian Inc., USA) using helium as the carrier gas, which
2.6.1. Determination of dry weight of residual PE microplastics was equipped with DB-5MS (30 m 0.25 mm ID, film thickness
After the incubation period ended, the PE microplastics in the 0.25 mm, Agilent, USA) of non-polarity. The oven temperature was
530 S.Y. Park, C.G. Kim / Chemosphere 222 (2019) 527e533
kept at 40 C for 3 min, increased to 280 C at 10 C min1, and then Aeromonas caviae, as shown in Fig. 2. Among these, Aeromonas sp.,
finally held at 280 C for 4 min (Roy et al., 2008). Unknown com- an obligatory anaerobe, was commonly detected at 2 and 5 m for
pounds that originated from the incubation were identified by site B, which had been buried earlier than site A, while Bacillus spp.
comparing their mass spectra with the NIST/WILEY database. were found in the more recently buried site A.
Selectively isolated PE degraders from the sediments were
inoculated in the basal medium containing 1% (w/v) PE micro-
2.6.5. Thermogravimetric analysis of PE microplastics
plastics for 20 d under aerobic conditions. It was evident that Ba-
Thermogravimetric analyses of PE particles were performed
cillus sp. and Paenibacillus sp. were dominantly present at more
using TGA Instruments (TG 209 F3 Tarsus®, NETZSCH, Germany).
than 85% as PE degraders that had been enriched from the A2
Approximately 10 mg of decomposed microplastics were subjected
bacterial isolates among others, which showed the highest PE
to heating at a rate of 10 C min1, starting from 30 C ramping and
degradation efficiency of approximately 15%. These bacterial strains
increasing to 600 C under ambient conditions.
are capable of degrading various types of polymer materials,
including low-density polyethylene (LDPE) (Das and Kumar, 2015a),
3. Results and discussion polyester polyurethane (Shah et al., 2016), and poly(lactic acid)
(Teeraphatpornchai et al., 2003). Particularly, Bacillus amylolique-
3.1. Isolation and identification of bacterial strains faciens contributed to reducing the dry weight of LDPE film by 16%
after 60 d (Das and Kumar, 2015b). In addition, the mixture of Ba-
The bacterial strains for screening PE-degrading bacteria were cillus sp. and Paenibacillus sp. isolated from an extinct volcano
obtained from four different points (A2, A5, B2, and B5) where crater could decrease the dry weight of LDPE film (type FGNX23-
plastic wastes were buried in the landfill site. Each sample had a D022) by 7.53% and 13.54% after 75 d and 150 d, respectively
different environmental organic content with 4385 mg O2 L1 (A2), (Nowak et al., 2011). Thus, we undertook a subsequent biodegra-
4106 mg O2 L1 (A5), 1914 mg O2 L1 (B2), and 1714 mg O2 L1 (B5) dation experiment by employing the blended PE degraders
of SCOD. The varying organic concentration among the samples composed of Bacillus sp. and Paenibacillus sp. for 60 d to assess the
was derived from the difference in historical backgrounds variation in physicochemical changes in granular PE microplastics.
depending on the reclamation period of wastes and relevant de-
gradability. Sampling point A had more recently buried wastes than 3.2. Determination of weight loss of PE and variation in SCOD
sampling point B. Nevertheless, regardless of the location, the
deeper sites showed a lower concentration than that of shallower The apparent degradation efficiency of PE particles was assessed
sites, thereby indicating that more active decomposition occurred by comparing the dry weight loss of PE microplastics. To do this,
at deeper sites. they were washed with 2% (w/v) SDS solution to remove the cell
Different historical backgrounds of the organic content and and its debris from the collected sample after the microbial
types of plastic wastes buried at each sampling point and depth degradation test (Fig. 3 (a)). The weight loss of PE microplastic was
might have directly induced different microbial diversity. From this, 14.7% after 60 d of incubation where the dry weight loss was sig-
we chose 7 microbial strains among the 20 single colonies grown nificant in the early phase of incubation. In the negative control
on the LB agar plates. These were strain numbers 21, 22, 23, and 25 (without inoculation), weight loss of PE microplastic was lower
from A2; 26 from B2; 51 from A5; and 56 from B5; respectively than 5%. The difference in weight loss might have been due to
(Fig. 2). Based on the 16S rDNA gene sequencing, the bacterial microbial metabolism and partial dissolution of PE particles. Recent
cultures isolated from the site mainly belonged to four genera of studies reported that the rate of degradation of PE polymer mate-
class Bacilli in terms of Bacillus, Paenibacillus, Fontibacillus, and rials widely ranged from 1.5% to 13% according to varying experi-
Enterococcus together with a genus of order Aeromonadales (Aer- mental conditions and types of microbes. Out of these, the
omonas). They included strains of Bacillus velezensis, Bacillus pseu- degradation efficiency observed in this study was comparable to
domycoides, Paenibacillus alvei, Paenibacillus motobuensis, that of LDPE film degraded by mixed microbial cultures of Bacillus
Fontibacillus phaseoli, Enterococcus avium, Aeromonas veronii, and sp. and Paenibacillus sp. mentioned in Section 3.1. Additionally,
Fig. 3 (b) shows that the growth patterns of microbes under the
presence of PE microplastic were consistent with its own degra-
dation efficiency compared to that of the control.
The organic matter content was measured as SCOD during the
incubation. For the control, 675 mg O2 L1 of SCOD was observed,
while approximately 60 mg O2 L1 originated from the liquid me-
dium itself. After the inoculation, SCOD decreased to less than
60 mg O2 L1. This clearly verified that the given microbes could
biologically attack the structure of PE particles that were eventually
decomposed.
Fig. 3. (a) Weight loss of PE microplastic and (b) microbial population density of
attached and suspended cells observed for 20, 40, and 60 d after the mixed bacterial
strains mainly composed of Bacillus sp. and Paenibacillus sp. were incubated.
4. Conclusion
association with the FTIR and TGA. As incubation time increased, Harshvardhan, K., Jha, B., 2013. Biodegradation of low-density polyethylene by
marine bacteria from pelagic waters, Arabian Sea, India. Mar. Pollut. Bull. 77,
daughter compounds appeared, so their size decreased to conse-
100e106.
quently lose weight, which could in turn be attributed to keeping Horton, A.A., Walton, A., Spurgeon, D.J., Lahive, E., Svendsen, C., 2017. Microplastics
their stability much stronger compared to that of the control. in freshwater and terrestrial environments: evaluating the current under-
Nonetheless, the SCOD gradually decreased when incubation time standing to identify the knowledge gaps and future research priorities. Sci. Total
Environ. 586, 127e141.
increased, which meant that relatively more labile organic contents Jeon, H.J., Kim, M.N., 2015. Functional analysis of alkane hydroxylase system derived
were clearly decomposed to decrease their SCOD concentration, from Pseudomonas aeruginosa E7 for low molecular weight polyethylene
even though the types and levels of daughter compounds were biodegradation. Int. Biodeterior. Biodegrad. 103, 141e146.
Lambert, S., Wagner, M., 2016. Formation of microscopic particles during the
increasingly released into the media. degradation of different polymers. Chemosphere 161, 510e517.
Lau, A.K., Cheuk, W.W., Lo, K.V., 2009. Degradation of greenhouse twines derived
Acknowledgments from natural fibers and biodegradable polymer during composting. J. Environ.
Manag. 90, 668e671.
Li, W.C., Tse, H.F., Fok, L., 2016. Plastic waste in the marine environment: a review of
This research was supported by the Basic Science Research sources, occurrence and effects. Sci. Total Environ. 566e567, 333e349.
Program through the National Research Foundation of Korea (NRF) Mukherjee, S., Chowdhuri, U.R., Kundu, P.P., 2015. Bio-degradation of polyethylene
waste by simultaneous use of two bacteria: Bacillus licheniformis for produc-
funded by the Ministry of Education (NRF- tion of bio-surfactant and Lysinibacillus fusiformis for bio-degradation. RSC
2017R1D1A1B03034029). Adv. 6, 2982e2992.
Nowak, B., Pajak, J., Drozd-Bratkowicz, M., Rymarz, Grazyna, 2011. Microorganisms
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