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Biotechnology Advances 24 (2006) 382 – 388

www.elsevier.com/locate/biotechadv

Research review paper


Rhizobitoxine modulates plant–microbe interactions
by ethylene inhibition
Masayuki Sugawara a , Shin Okazaki a , Noriyuki Nukui a , Hiroshi Ezura b ,
Hisayuki Mitsui a , Kiwamu Minamisawa a,⁎
a
Graduate School of Life Sciences, Tohoku University, Katahira, Aoba-ku, Sendai 980-8577, Japan
b
Gene Research Center, Tsukuba University, Ten-nodai, Tsukuba 305-8572, Japan
Available online 3 March 2006

Abstract

Bradyrhizobium elkanii produces rhizobitoxine, an enol-ether amino acid, which has been regarded as a phytotoxin because it
causes chlorosis in soybeans. However, recent studies have revealed that rhizobitoxine plays a positive role in establishing symbiosis
between B. elkanii and host legumes: rhizobitoxine enhances the nodulation process by inhibiting ACC (1-aminocyclopropane-
1-carboxylate) synthase in the ethylene biosynthesis of host roots. B. elkanii rtxA and rtxC genes are required for rhizobitoxine
production. In particular, rtxC gene is involved in the desaturation of dihydrorhizobitoxine into rhizobitoxine. A legume with a
mutated ethylene receptor gene produced markedly higher numbers of rhizobial infection threads and nodule primordia. Thus,
endogenous ethylene in legume roots negatively regulates the formation of nodule primordia, which is overcome by rhiozbitoxine.
Although a plant pathogen Burkholderia andropogonis has been known to produce rhizobitoxine, the genome sequence of
Xanthomonas oryzae showed the existence of a putative rhizobitoxine transposon in the genome. The cumulative evidence suggests
that rhizobitoxine-producing bacteria modulate plant–microbe interactions via ethylene in the rhizosphere and phyllosphere
environments. In addition, rhizobitoxine-producing capability might be utilized as tools in agriculture and biotechnology.
© 2006 Elsevier Inc. All rights reserved.

Keywords: Bradyrhizobium elkanii; Ethylene; Legume; Rhizobia; Rhizobitoxine

Contents

1. Introduction . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 383
2. Effect of ethylene on nodulation . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 383
3. Biochemical functions of rhizobitoxine . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 383
4. Positive role of rhizobitoxine production in symbiosis . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 384
5. Rhizobitoxine biosynthesis genes and pathway . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 384
6. Rhizobitoxine-producing pathogens . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 385
7. Nodulation enhancement via ethylene perception . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 385
8. Alternative strategy for decreasing ethylene . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 386
9. Concluding remarks . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 386

⁎ Corresponding author. Tel./fax: +81 22 217 5684.


E-mail address: [email protected] (K. Minamisawa).

0734-9750/$ - see front matter © 2006 Elsevier Inc. All rights reserved.
doi:10.1016/j.biotechadv.2006.01.004
M. Sugawara et al. / Biotechnology Advances 24 (2006) 382–388 383

Acknowledgements . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 387
References . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 387

1. Introduction Inhibition of ethylene synthesis and responses has been


shown to enhance nodule formation in Medicago
In the symbiotic nitrogen-fixation process, bacteria of truncatula (Oldroyd et al., 2001), Medicago sativa
the family Rhizobiaceae convert atmospheric dinitrogen (Nukui et al., 2000; Peters and Crist-Estes, 1989), Lotus
(N2) to ammonia (NH3), which can be effectively utilized japonicus (Bras et al., 2000; Nukui et al., 2000), P.
by host legume plants. The family Rhizobiaceae cur- sativum (Guinel and Sloetjes, 2000; Lorteau et al.,
rently includes six genera: Rhizobium, Sinorhizobium, 2001), and Macroptilium atropurpureum (Nukui et al.,
Mesorhizobium, Allorhizobium, Azorhizobium, and 2000). In addition, a hypernodulating mutant of M.
Bradyrhizobium, which are collectively referred to as truncatula has ethylene-insensitive phenotypes (Pen-
rhizobia. They have the ability to infect the roots of metsa and Cook, 1997). Unlike in most legume species,
legumes and to produce nodules. The differentiated however, ethylene may not play a significant role in the
forms of rhizobia in the nodule, called bacteroids, fix nodulation of modern soybean cultivars (Hunter, 1993;
atmospheric nitrogen into ammonia and export the fixed Schmidt et al., 1999). Ethylene evolution in legume
nitrogen to the host plant (Long, 1989). Symbiotic ni- roots increases after application of rhizobial cells
trogen fixation is of great importance not only in the (Ligero et al., 1986; Suganuma et al., 1995), Nod
production of leguminous crops but also in the global factor (van Spronsen et al., 1995), nitrate (Caba et al.,
nitrogen cycle. 1998; Ligero et al., 1987), and illumination (Lee and
Nitrogen-fixing nodules are formed as a consequence LaRue, 1992a), suggesting that these environmental
of a series of interactions between rhizobia and legu- factors control nodulation through their effects on the
minous host plants (Fisher and Long, 1992). The sym- levels of ethylene.
biotic partners show a high degree of mutual specificity,
mediated by the exchange of chemical signals (Spaink, 3. Biochemical functions of rhizobitoxine
1996, 2000). The plant signals, flavonoids excreted by
the roots, activate the expression of nodulation genes in In 1956, Erdman et al. (1956) first reported that
rhizobia, resulting in the production of rhizobial lipo- certain strains of rhizobia induce chlorosis in new leaves
chitooligosaccharide signals called Nod factors. Al- of soybeans. Owens and colleagues (Owens and Wright,
though legumes form root nodules mainly in response to 1965a,b) purified the toxic compound from nodule
Nod factors, it has been thought that the plant perception extracts and culture media of Rhizobium japonicum
of endogenous signals, particularly plant hormones, is (now Bradyrhizobium elkanii) and demonstrated that the
also important for the establishment of proper symbiotic compound is phytotoxic to soybeans (Johnson et al.,
interactions between rhizobia and legumes (Caetano- 1959; Owens, 1973). The toxic compound was later
Anolles and Gresshoff, 1991). called rhizobitoxine. Among soybean bradyrhizobia, all
strains of B. elkanii (formerly DNA homology group II)
2. Effect of ethylene on nodulation produce rhizobitoxine, whereas those of B. japonicum
(formerly DNA homology group I) do not produce
Ethylene is produced and sensed in response to a rhizobitoxine at all (Hollis et al., 1981; Minamisawa,
wide variety of environmental and developmental cues, 1989, 1990; Minamisawa and Mitsui, 2000). Rhizobi-
including germination, flowering, drought, pathogen toxine has therefore been regarded as a phytotoxin that
attack, and nodulation (Abeles et al., 1992; Spaink, causes chlorosis symptoms in soybeans.
1997). In particular, ethylene inhibits infection of rhi- The structure of rhizobitoxine was solved in 1972
zobia and nodulation of most legumes, as shown by (Owens et al., 1972b). Rhizobitoxine is an enol-ether
many studies (Okazaki et al., 2004a). Exogenously amino acid (2-amino-4-[2-amino-3-hydroxypropoxy]-
applied ethylene or ethylene precursor inhibits nodula- trans-3-butenoic acid) with a molecular weight of 190
tion in many legumes. In Pisum sativum, exogenous (Fig. 1). The first biochemical function identified for
ethylene application inhibits elongation of infection rhizobitoxine was that of an inhibitor of β-cystathionase
threads into the inner cortex (Lee and LaRue, 1992b). in the methionine biosynthesis pathway (cystathionine
In P. sativum, endogenous ethylene exerts positions on β-lyase, E.C.4.4.1.8) (Fig. 1). β-Cystathionase catalyzes
nodule meristem morphogenesis (Heidstra et al., 1997). the conversion of cystathionine to homocysteine, pyruvate,
384 M. Sugawara et al. / Biotechnology Advances 24 (2006) 382–388

and ammonium. As an analog of cystathionine, rhizobi- atropurpureum (siratro) and enhances nodule formation
toxine irreversibly inhibits β-cystathionase in bacteria by using B. elkanii USDA94 and its mutant lacking
(Owens et al., 1968) and plants (Giovanelli et al., 1972). rhizobitoxine production (Yuhashi et al., 2000). In
Yasuta et al. (1999) found that rhizobitoxine also particular, the nodulation competitiveness of B. elkanii
strongly inhibits 1-aminocyclopropane-1-carboxylate USDA94 was significantly enhanced by rhizobitoxine
(ACC) synthase (E.C.4.4.1.14) in the ethylene biosyn- production. Duodu et al. also reported a positive role of
thesis pathway (Fig. 1), which can explain the early rhizobitoxine in the symbiosis between B. elkanii
observation of rhizobitoxine inhibition of ethylene USDA61 and Vigna radiata (mungbean) (Duodu et al.,
evolution in apple tissues (Owens et al., 1971). ACC 1999). Rhizobitoxine-minus mutants of USDA61 formed
synthase is the rate-limiting enzyme in ethylene bio- dramatically fewer mature nodules than the wild-type
synthesis in plants, catalyzing the conversion of S- strain. Interestingly, the rhizobitoxine-minus mutants
adenosylmethionine to ACC. A closely related ethoxy induced many immature nodules, indicating that the initial
analog of rhizobitoxine, aminoethoxyvinylglycine stages of root hair infection were not impaired but that the
(AVG), also inhibits ACC synthase (Devine and development to mature nodules was obstructed. Therefore,
Breithaut, 1980; Yasuta et al., 1999). The oxidized ethylene might affect abortion of the developing nodules in
form of rhizobitoxine (dihydrorhizobitoxine) is approx- the association between USDA61 and mungbean, and
imately 99% less potent than rhizobitoxine as an inhi- rhizobitoxine production by the bacterium would over-
bitor of ACC synthase, so the double bond between C3 come this effect by inhibiting ethylene biosynthesis.
and C4 may be critical for the inhibition of ACC syn- Another study on rhizobitoxine and nodulation was
thase (Yasuta et al., 1999). carried out by Parker et al. using Amphicarpaea (Parker
and Peters, 2001). Nodulation experiments using B.
4. Positive role of rhizobitoxine production in elkanii USDA61 and its rhizobitoxine-minus mutants
symbiosis revealed that efficient nodulation in A. edgeworthii but
not in A. bracteata is highly dependent on rhizobitoxine
Rhizobitoxine has been regarded as a phytotoxin ever production.
since the discovery that it induces chlorosis to soybeans.
However, recent studies have shown a positive role of 5. Rhizobitoxine biosynthesis genes and pathway
rhizobitoxine in the symbiosis between B. elkanii strains
and their host legumes. Yuhashi et al. reported that The genes involved in rhizobitoxine biosynthesis
rhizobitoxine production in B. elkanii USDA94 reduces have been identified in two B. elkanii strains, USDA61
ethylene evolution from the associated roots of M. (Ruan and Peters, 1992) and USDA94 (Yasuta et al.,

Aspartate Methionine
biosynthetic
pathway
Homoserine

S Rhizobitoxine
Cystathionine
β-cystathionase

Homocysteine
+
3 S
3 S
Ado
Methionine SAM ACC synthase Ethylene
ACC
Ethylene biosynthetic pathway

Fig. 1. Rhizobitoxine inhibition in methonine and ethylene biosynthetic pathway. SAM, S-adenosylmethionine; ACC, 1-aminocyclopropane-1-
carboxylate.
M. Sugawara et al. / Biotechnology Advances 24 (2006) 382–388 385

2001). Ruan et al. isolated Tn5-induced rhizobitoxine- dihydrorhizobitoxine by an rtxC-encoded protein is


null mutants of B. elkanii USDA61 and identified the essential for the bacterium to elicit these phenotypes in
rtxA gene, which is responsible for rhizobitoxine bio- planta.
synthesis in culture and in planta (Ruan and Peters,
1992). Yasuta et al. (2001) cloned and sequenced the 6. Rhizobitoxine-producing pathogens
genetic locus involved in rhizobitoxine biosynthesis
from B. elkanii USDA94, which produces more rhizobi- A plant pathogen, Burkholderia andropogonis, is also
toxine than USDA61 in culture. B. elkanii USDA94 known to be a rhizobitoxine producer. The pathogen
possesses several open reading frames (ORFs) down- causes chlorotic symptoms in corn and sorghum, pre-
stream of the rtxA gene. A large deletion mutant of B. sumably as a result of rhizobitoxine production in planta
elkanii, USDA94Δrtx::Ω1, which lacks rtxA, rtxC, and (Mitchell and Frey, 1988). Recently, rtx genes found in
the downstream ORFs, does not produce rhizobitoxine, the genome of Xanthomonas oryzae pathovar oryzae
dihydrorhizobitoxine, or serinol. The latter two com- KACC10331 (Lee et al., 2005), a bacterium that causes
pounds have been found to be co-produced with rhizobi- bacterial blight in rice (Oryza sativa L.), although the rtx
toxine and are regarded as intermediates (Minamisawa genes were misannotated (Lee et al., 2005). Amino acid
and Watanabe, 1986; Owens et al., 1972a; Yasuta et al., sequences of rtxA and rtxC genes are highly homologous
2001). Complementation analyses with cosmids con- with those of B. elkanii (Fig. 2). The rtx gene clusters in
taining an insertional mutagenesis within the putative X. oryzae and B. elkanii, contained additional two genes
rtx operon suggested that (i) at least rtxA and rtxC are that are relevant to glutamine (ORF2; Glutamine amido-
necessary for rhizobitoxine production in B. elkanii, transferase, ORF4; Glutamine synthetase). These genes
(ii) the newly discovered rtxC gene, which is located probably supply glutamine-related substrates for rhizo-
immediately downstream of the rtxA gene, is involved in bitoxine biosynthesis (Sugawara et al., unpublished re-
desaturation of dihydrorhizobitoxine into rhizobitoxine, sults). From the comparison, we expect rhizobitoxine
and (iii) other ORFs downstream of rtxC affect the production in X. oryzae KACC10331. Interestingly, the
levels of production of rhizobitoxine and its intermedi- rtx gene cluster in X. oryzae pv. oryzae KACC10331
ates by unknown functions. resides between two insertion sequences (ISs), and
Large amounts of dihydrorhizobitoxine are generally formed a composite transposon structure for rhizobi-
co-produced with rhizobitoxine (Minamisawa and toxine biosynthesis (Fig. 2). Therefore, such rhizobi-
Kume, 1987; Owens et al., 1972a). However, no con- toxine transpson may transfer to other plant-associated
clusive data have been reported on the biological effects bacteria in the environments.
of dihydrorhizobitoxine in planta. Okazaki et al. (2004b)
demonstrated that dihydrorhizobitoxine production does 7. Nodulation enhancement via ethylene perception
not affect the plant phenotypes of B. elkanii USDA94 in
terms of nodulation competitiveness and chlorosis Rhizobitoxine is secreted outside rhizobial cells and
induction. They thus concluded that desaturation of delivered to the plant. In fact, rhizobitoxine has been

Bradyrhizobium elkanii USDA94

rtxA rtxC ORF2 ORF3.1 ORF3.2 ORF4


N-domain C-domain

Identity (%) 55.2 72.6 64.5 48.8 30.3

ISXo5 IS1113

1 kb
Xanthomonas oryzae pv. oryzae KACC10331

Fig. 2. Comparison of rtx genes in Bradyrhizobium elkanii USDA94 and Xanthomonas oryzae pv. oryzae KACC10331. Sequence comparison were
carried out using sequence of rtx genes in B. elkanii USDA94 (accession no. AB062279) and X. oryzae pv. oryzae KACC10331 (accession no.
AE013598). Arrows show rtx genes and predicted open reading frame (ORFs). Numbers in the middle space indicate percent identity based on the
amino acids sequences. ISXo5 and IS113 are insertion sequences with transposase gene (Lee et al., 2005).
386 M. Sugawara et al. / Biotechnology Advances 24 (2006) 382–388

detected in leaves as well as in nodules of soybeans genome of the fast-growing M. loti MAFF303099
inoculated with B. elkanii (Minamisawa and Kume, presented in a database (Kaneko et al., 2000), and
1987). Moreover, ethylene evolution is blocked in le- identified ACC deaminase gene as a candidate (Uchiumi
gume root systems inoculated with B. elkanii (Yuhashi et al., 2004). Indeed, ACC deaminase was verified to
et al., 2000). Therefore, the explanation of how rhizobi- enhance nodulation and competitiveness to the host
toxine decreases endogenous levels of ethylene in le- legume by using a disruption mutant of ACC deaminase
gume roots appears straightforward. gene (mlr5932) (Uchiumi et al., 2004). Recently, genes
The next question is how a decreased ethylene level encoding ACC deaminase have been also found in other
enhances nodulation. Recently, several models have rhizobia, such as Rhizobium leguminosarum and B.
been proposed depicting the relationships between japonicum (Kaneko et al., 2002; Ma et al., 2003a,b).
signal transduction, ethylene sensing, and the develop- ACC deaminase from R. leguminosarum bv. viciae has
ment of nodulation (Gresshoff et al., 2003; Guinel and been confirmed to enhance nodulation of P. sativum as
Geil, 2002; Stearns and Glick, 2003). One promising well (Ma et al., 2003a). These recent findings on ACC
approach will be to construct transgenic legumes with deaminase suggest that rhizobia can adopt more than
altered ethylene sensitivities. The expression of ethylene one strategy to reduce the amount of ethylene syn-
receptors that cannot bind ethylene confers reduced thesized by their host legumes and thus enhance nodule
ethylene sensitivity to heterologous plants in a geneti- formation. Indeed, since many processes in nodule for-
cally dominant manner (Bleecker, 1999). In petunia and mation are blocked by ethylene, it seems reasonable
tomato, transformation with a mutant Arabidopsis that, in order to enable efficient nodulation, rhizobia
ethylene receptor gene (etr1-1) conferred reduced would decrease ethylene levels by producing both ACC
sensitivity to ethylene (Wilkinson et al., 1997). deaminase and rhizobitoxine.
To address the mechanism by which ethylene inhibits
nodulation, Nukui et al. (2004) transformed L. japonicus 9. Concluding remarks
B-129 ‘Gifu’ (Handberg and Stougaard, 1992) with a
mutated ethylene receptor gene Cm-ERS1/H70A: A point The cumulative evidence reveals general strategies
mutation was introduced into the melon ethylene receptor by which rhizobia produce an inhibitor and an enzyme
Cm-ERS1 (Sato-Nara et al., 1999) by changing the 70th to decrease ethylene levels in host roots and thereby
amino acid, histidine, to alanine, which abolished its enhance nodulation. Plant pathogens, such as B.
ethylene-binding ability. The resultant transgenic L. andropogonis and X. oryzae, probably produce rhizo-
japonicus plants showed reduced ethylene sensitivity. bitoxine to inhibit ethylene biosynthesis and reduce
When inoculated with M. loti, the transgenic L. defense reactions by the host plants. The existence of
japonicus produced markedly higher numbers of in- putative rhizobitoxine transposon in X. oryzae genome
fection threads and nodule primordia on their roots than prompts us to speculate that more plant-associated bac-
did either wild-type or azygous plants without the trans- teria produce rhizobitoxine and modulate plant–microbe
gene. In addition, the amount of transcripts of NIN, a interactions in the rhizosphere and phyllosphere
gene governing formation of infection threads (Schauser environments.
et al., 1999), increased in the inoculated transgenic plants If some rhizobial strains lack the ability to decrease
as compared with the wild-type plants. These results ethylene levels in host legumes, the introduction of
imply that endogenous ethylene in L. japonicus roots genes for rhizobitoxine biosynthesis and ACC deami-
inhibits the formation of nodule primordia, as well as nase into these rhizobia ought to enhance their sym-
other infection processes (Nukui et al., 2004). biotic interactions with host legumes. This idea may also
be extended to other plant-associated bacteria, such as
8. Alternative strategy for decreasing ethylene Rhizobium radiobacter (formerly Agrobacterium tume-
faciens), which has been used for plant transformation.
The ability to synthesize rhizobitoxine is confined to Indeed, application of AVG, an analog of rhizobitoxine,
the slow-growing B. elkanii among rhizobia so far. increased the efficiency of Agrobacterium-mediated
Thus, Yasuta et al. (1999) addressed the question as to gene transfer to explants of melons (Ezura et al.,
whether fast-growing rhizobia possess another inhibi- 2000). The ethylene-decreasing strategies of rhizobia
tory factor for ethylene biosynthesis of host plants, are interesting and suggestive for the further under-
because it could enhance nodulation (Nukui et al., standing of plant–microbe interactions and should be a
2000). They sought potential enzymes and compounds promising tool for overcoming the problem of rhizobial
for reducing ethylene biosynthesis from the entire competition and for making further progress toward
M. Sugawara et al. / Biotechnology Advances 24 (2006) 382–388 387

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