MANAS, Biochem Lab June 29 PDF

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MANAS, Sandra Alexis A.

June 29, 2020


BIOCHEM LAB

DNA REPLICATION
1. Make a concept map illustrating the process of DNA replication

2. Differentiate leading and lagging strands

A leading strand is the strand which is synthesized in the 5'-3'direction


while a lagging strand is the strand which is synthesized in the 3'-5' direction.
The leading strand is moving towards the replication fork so it is synthesized
continuously while a lagging strand is moving away from the replication fork so it
is synthesized in fragments which are called Okazaki fragments.

3. 3. What are the enzymes involved in DNA replication and what are their functions?
• Helicase – they unwind the DNA double helix
• Gyrase – they relieve the buildup of torque during unwinding
• Primase – they are the ones who lays down RNA primers
• DNA polymerase III - these are the main DNA synthesis enzyme
• DNA polymerase I - they replace RNA primers with DNA
• Ligase – the ones who fills in the gaps

4. What are Okazaki fragments?


Okazaki Fragments are short sequences of DNA nucleotides which are
synthesized discontinuously and later linked together by the enzyme DNA
ligase to create the lagging strand during DNA replication.

5. Describe the process of transcription and translation


Transcription is the process by which DNA is copied (transcribed) to
mRNA, which carries the information needed for protein synthesis. Transcription
takes place in two broad steps. First, pre-messenger RNA is formed, with the
involvement of RNA polymerase enzymes. The process relies on Watson-Crick
base pairing, and the resultant single strand of RNA is the reverse-complement
of the original DNA sequence. Second, the pre-messenger RNA is then "edited"
to produce the desired mRNA molecule in a process called RNA splicing.

Translation is the process by which mRNA directs protein synthesis with


the assistance of tRNA. The mRNA formed in transcription is transported out of
the nucleus, into the cytoplasm, to the ribosome (the cell's protein synthesis
factory). Here, it directs protein synthesis. Messenger RNA is not directly
involved in protein synthesis − transfer RNA (tRNA) is required for this.

6. Try to decode a protein. Indicate where it stops and ends. How did you arrive at
your answer? Explain.
According to the third video the peptide formed was Met-Pro-Arg-Val-Ser
from the chain {GACCAUGCCGCGAGUGUCGUGACCAG}, in order to identify
the peptides formed in a chain the first step is to find the Starting codon which is
AUG this codon equates to Met and throughout the translation process continue
to identify the different each codon and identify their equivalent peptide name using
the given sheet, until you come across either UAA, UAG, or UGA which is the
indication that the translating process is to be stopped, in the example given the
stop codon signal is UGA.

7. You may indicate the answers to the other questions in your concept map except
for 5 and 6. Please highlight for easy identification.

REFERENCES

Transcription, Translation and Replication. (n.d.). Retrieved June 29, 2020, from
https://www.atdbio.com/content/14/Transcription-Translation-and-Replication

Schafferer, S. (n.d.). Retrieved June 29, 2020, from


http://www.rnomics.at/index.php/projects/protsynthanddecgroupmenu

Decoding DNA-Modeling Protein Synthesis. (2020, March 04). Retrieved June 29, 2020,
from https://kscorn.com/lesson/dnalesson/

What enzymes are used in DNA replication?: Socratic. (2014, October 19). Retrieved
June 29, 2020, from https://socratic.org/questions/what-enzymes-are-used-in-dna-
replication

Berg JM, Tymoczko JL, Stryer L. Biochemistry. 5th edition. New York: W H Freeman;
2002. Section 27.4, DNA Replication of Both Strands Proceeds Rapidly from Specific
Start Sites.Available from: https://www.ncbi.nlm.nih.gov/books/NBK22587/

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