UV-Vis Analyst Software Manual
UV-Vis Analyst Software Manual
SOFTWARE MANUAL
Drawell Scientific
TABLE OF CONTENTS
1. Functions…………………………………………………………………………………………………… 1
1.1 Main Functions……………………………………………………………………………………………. 1
1.2 Spectrum Processing Function………………………………………………………………………….. 1
1.3 System Check and Calibration Function……………………………………………………………….. 2
2. Setup…………………………………………………………………………………………………………. 3
2.1 System Requirements for the UV-Vis Analyst………………………………………………………….. 3
2.2 Setup the UV-Vis Analyst to PC…………………………………………………………………………. 3
2.3 Remove the UV-Vis Analyst from PC…………………………………………………………………… 4
2.4 Install the dongle………………………………………………………………………………………….. 4
2.5 Run the UV-Vis Analyst…………………………………………………………………………………... 4
2.6 Set Comm. Port…………………………………………………………………………………………… 5
3. Introduction………………………………………………………………………………………………... 6
3.1 Main Interface……………………………………………………………………………………………... 6
3.2 Menu bar and Toolbar…………………………………………………………………………………….. 6
4. Operation…………………………………………………………………………………………………… 11
4.1 Single Wavelength Photometric Measurement………………………………………………………... 11
4.2 Fixed Point Measurement………………………………………………………………………………... 11
4.2.1 Multi-wavelength Photometric Measurement……………………………………………………... 11
4.2.2 Concentration Measurement……………………………………………………………………….. 13
4.2.2.1 Set Up Linear Regression Curve…………………………………………………………….. 13
4.2.2.2 Measure Concentration by using the linear regression curve…………………………….. 15
4.2.3 Assistant functions…………………………………………………………………………………… 16
4.2.3.1 Delete a Result…………………………………………………………………………………. 16
4.2.3.2 Modify a Result…………………………………………………………………………………. 16
4.2.3.3 Recalculate Concentration……………………………………………………………………. 16
4.2.3.4 Set Data Font…………………………………………………………………………………… 16
4.2.3.5 Edit Measurement Information……………………………………………………………….. 16
4.3 Wavelength Scanning……………………………………………………………………………………. 16
4.3.1 Scan Sample…………………………………………………………………………………………. 16
4.3.2 Spectrum Processing………………………………………………………………………………... 18
4.3.2.1 Auto List Peaks and Valleys…………………………………………………………………... 18
4.3.2.2 Rescale…………………………………………………………………………………………. 18
4.3.2.3 Original Scales…………………………………………………………………………………. 18
4.3.2.4 Zoom Selected Area…………………………………………………………………………… 18
4.3.2.5 Trace a Spectrum………………………………………………………………………………. 19
4.3.2.6 Select a Spectrum as Current………………………………………………………………… 20
4.3.2.7 Derivative……………………………………………………………………………………….. 20
4.3.2.8 Moving Window Averaging……………………………………………………………………. 21
4.3.2.9 Savitzky-Golay Smoothing Filter……………………………………………………………... 22
4.3.2.10 Resample……………………………………………………………………………………….. 22
4.3.2.11 Spectrum Addition……………………………………………………………………………… 23
4.3.2.12 Spectrum Subtraction………………………………………………………………………….. 24
4.3.2.13 Spectrum Multiplication………………………………………………………………………... 25
4.3.2.14 Spectrum Division……………………………………………………………………………… 26
4.3.3 Assistant Functions………………………………………………………………………………….. 27
4.3.3.1 Define Display Information……………………………………………………………………. 27
4.3.3.2 Edit Print Information…………………………………………………………………………... 27
4.4 Time Scanning…………………………………………………………………………………………….. 28
4.4.1 Scan Sample…………………………………………………………………………………………. 28
4.4.2 Graph Processing……………………………………………………………………………………. 29
4.4.3 Assistant Functions………………………………………………………………………………….. 29
4.4.3.1 Calculate Rate………………………………………………………………………………….. 29
4.4.3.2 Define Display Information……………………………………………………………………. 29
4.4.3.3 Edit Print Information…………………………………………………………………………... 30
4.5 DNA/Protein Measurement………………………………………………………………………………. 30
4.5.1 DNA/Protein Measurement…………………………………………………………………………. 30
4.5.2 Assistant Functions………………………………………………………………………………….. 32
5. Instrument Validity………………………………………………………………………………………. 33
5.1 Validity Measurement…………………………………………………………………………………….. 33
5.1.1 Photometric Validity Measurement………………………………………………………………… 33
5.1.2 Wavelength Validity Measurement………………………………………………………………… 34
5.1.3 Assistant Functions………………. ………………………………………………………………… 36
5.1.3.1 Recalculate……………………………………………………………………………………... 36
5.1.3.2 Set Data Font…………………………………………………………………………………… 36
5.1.3.3 Edit Measurement Information……………………………………………………………….. 36
5.2 Energy Scan………………………………………………………………………………………………. 36
5.3 Spectrum 37
Slitwidth…………………………………………………………………………………………
5.4 View Dark Current………………………………………………………………………………………… 37
6. Assistant Functions…………………………………………………………………………………….. 38
6.1 Control the Instrument……………………………………………………………………………………. 38
6.1.1 Connect/Disconnect to 38
Spectrophotometer………………………………………………………..
6.1.2 Scan System Baseline………………………………………………………………………………. 38
6.1.3 Switch On/Off W Lamp……………………………………………………………………………… 38
6.1.4 Switch On/Off D2 Lamp……………………………………………………………………………... 38
6.1.5 Setting the Lamp Switching Wavelength Position………………………………………………... 38
6.1.6 Locate 656.1nm……………………………………………………………………………………… 39
6.1.7 Change Slitwidth……………………………………………………………………………………... 39
6.2 File Operation……………………………………………………………………………………………... 39
6.2.1 Save a File……………………………………………………………………………………………. 39
6.2.2 Load a File……………………………………………………………………………………………. 39
6.2.3 Open a File From Instrument……………………………………………………………………….. 39
6.3 Password Protection……………………………………………………………………………………… 40
6.3.1 Setting a Password………………………………………………………………………………….. 40
6.3.2 Changing a Password……………………………………………………………………………….. 40
6.4 Auto Sampling…………………………………………………………………………………………….. 40
Functions
1. Functions
This section introduces the functions of the UV-Vis Analyst.
Concentration Measurement
2 methods to set up the regression curve.
Up to 20 standards to set up the regression curve. The UV-Vis Analyst will calculate the working
curve using a linear equation that fits the data. Enter factor values to generate regression curve.
3 methods for curve fit.
Linear fit, Quadratic fit and Cubic fit.
Wavelength Scanning
Allow user to set scan step (0.1, 0.2, 0.5, 1.0 and 5.0nm).
Spectrum display mode can be changed (Wavelength-%Transmittance or Wavelength-Absorbance).
Peaks and valleys will be automatically detected after scanning (User can define the peak threshold).
Powerful spectrum processing functions are provided.
Time Scanning
Allow user to set scan Interval (0.5, 1.0, 2.0, 5.0, 10, 30 and 60s).
Spectrum display mode can be changed (Time-%Transmittance or Time-Absorbance).
Peaks and valleys will be automatically detected after scanning (User can define the peak threshold).
Powerful spectrum processing functions are provided.
DNA/Protein Measurement
Wavelength points and ratios can be set up.
Results will be grouped into a table format automatically.
Scale Expansion
Simultaneous expansion of the X and Y axes are provided with the “Zoom” function. Display range can also
be changed though the “Display Setup” function.
Differentiation
You can calculate and display the first through to the fourth derivative spectrum for a given spectrum.
Derivative spectrum is useful for enhancing spectrum data that are not readily apparent in an absorbance
spectrum.
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Functions
Calculate Spectrum
You can calculate addition, subtraction, multiplication and division between two spectrum with the resulting
data displayed on the screen.
Reset Wavelength
It affords to relocate the 656.1nm.
-2-
Setup
2. Setup
This section introduces how to setup the UV-Vis Analyst to PC.
7. Select program fold (Fig. 2-5). Click Next to copy files to PC (Fig. 2-6).
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Setup
Fig. 2-7
Fig. 2-8
-4-
Setup
Fig. 2-9
The UV-Vis Analyst can not control the Instrument before plugged the dongle into USB
port and set the Comm. Port.
-5-
Introduction
3. Introduction
This chapter introduces the interface of the UV-Vis Analyst.
Fig. 3-1
-6-
Introduction
Status of
Display status of spectrophotometer
Spectrophotometer
-7-
Introduction
Link
Connect to the Instrument
Spectrophotometer
Reset
Reset parameters of instrument
Spectrophotometer
Calibrate System
Scan system baseline
Baseline
Automatic Blank
UV-Photometer Do blank
Calibration
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Introduction
-9-
Introduction
About UV-Vis
Help Display the information about the UV-Vis Analyst
Analyst
Undo Scale
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Operation
4. Operation
This chapter introduces the operation of the UV-Vis Analyst.
1. Click on the toolbar, appears Goto specified wavelength form (Fig. 4-1).
Fig. 4-1
2. Key in the desired wavelength position, click Goto. The minimum wavelength step is 0.1nm in a
range from 190-1100nm.
3. Place a reference in the sample compartment, click Zero.
4. Place a sample in the sample compartment. The wavelength position and photometric value will be
displayed in the Readout box.
Fig. 4-2
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Operation
2. Click the Method tab.
3. Type the number of wavelength points in the Number of WL Points box, or click the up/down
arrows next to the box set the wavelength points. Leave the two boxes Calculate Concentration
and Use Standard Samples.
4. Key in the wavelength in the Wavelength box.
Fig. 4-3
7. Place a sample in the sample compartment. Click Start or to run a new measurement. The
display will change to the following (Fig. 4-4). Key in the sample name in the Name box.
Fig. 4-4
8. Click OK. The photometric data for sample will be listed in the Sample table.
9. Repeat steps 7-8 to measure all samples (Fig. 4-5).
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Operation
Fig. 4-5
(2) Place the reference into the sample holder. Click to do blank.
(3) Click the Standard tab.
(4) Place Standard 1 in the sample compartment. Click Start to run a measurement.
(5) Key in the concentration value of Standard 1 in the Conc. box.
(6) Key in the sample name for the standard in the Name box.
(7) Click OK. The photometric data, △A and concentration will be shown in the standard table.
(8) Repeat steps 4-7 to measure all the prepared standards (Fig. 4-6).
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Operation
Fig. 4-6
(9) Click down arrow in Curve Fit box to select curve fit method.
Method 2: Input the factor of the linear regression curve.
(1) Leave the Use Standard Samples check box.
(2) Click down arrow in Curve Fit box to select curve fit method.
(3) Input the factor of the linear regression curve.
7. Click Fitting tab to view the linear regression curve (Fig. 4-7). Click Display Setting tab to set the
display parameters and unit of concentration (Fig. 4-8).
Fig. 4-7
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Operation
Fig. 4-8
1. Set up linear regression curve (Refer 2.2.1) or click to open a file of linear regression curve
(*.QUA).
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Operation
Fig. 4-9
4.2.3 Assistant Functions
The following procedure shows how to modify, delete and recalculate results.
Click the Sample name label to select the result you want to delete, click or button Delete.
Click the Sample name label to select the result you want to modify, click or button Modify.
1. Click on the toolbar to new a sample scan measurement, appears the following form (Fig. 4-10).
Fig. 4-10
2. Click on the toolbar, appears the following form (Fig. 4-11). Input start wavelength in From box
(range: 190-1100nm), end wavelength in To box (range: 190-1100nm), select scan interval (0.1, 0.2,
0.5, 1.0, 2.0 or 5.0nm) and Filter times (1, 3, 5, 10 or 30), click OK.
- 16 -
Operation
Fig. 4-11
3. Click on the toolbar to select %Transmittance mode or click to select Absorbance mode.
Fig. 4-12
6. Place sample into the sample holder. Click to scan sample, the real time spectrum will be
Fig. 4-13
- 17 -
Operation
4.3.2 Spectrum Processing
After you have acquired a spectrum, the spectrum processing options are available.
Click on the toolbar to set the peak/Valley threshold (range: 0 to 1.000, step: 0.001, Fig. 4-14), Input
the threshold value, click OK. Click to list peaks and click to list valleys (Fig. 4-15).
Fig. 4-14
Fig. 4-15
4.3.2.2 Rescale
Click on the toolbar to activate zoom function. Position the cursor in the upper-left corner of the area
you want to select. Hold the left mouse button to drag the cursor to outline the spectrum area you want to
enlarge (Fig. 4-16). Release the mouse button. The part of the spectrum which is displayed within the
outlined area will be enlarged (Fig. 4-17). Click to undo scale. To cancel zoom to click again.
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Operation
Fig. 4-16
Fig. 4-17
Click on the toolbar, A crosshair cursor appears, move the cursor on the spectrum. Move the
crosshair cursor left or right on the spectrum. The data in the cursor window indicate the X-axis and Y-axis
values for the current cursor location (Fig. 4-18). Double click the left mouse button to release the crosshair
cursor.
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Operation
Fig. 4-18
Fig. 4-19
4.3.2.7 Derivative
Click on the toolbar. The following dialogue box appears (Fig. 4-20). Key in the class of derivative
(1-10, depending on whether 1st, 2nd, … 10th derivative is required) and type a name for the result
spectrum, then click OK. The result spectrum will be displayed overlaid with the original one (Fig. 4-21).
Fig. 4-20
- 20 -
Operation
Fig. 4-21
Click on the toolbar. Appears following form (Fig. 4-22). Click up/down arrow of the Range box to
select range value, key a file name in the Name box, click OK. The result spectrum will be displayed
overlaid with the original one (Fig. 4-23).
Fig. 4-22
Fig. 4-23
- 21 -
Operation
4.3.2.9 Savitzky-Golay Smoothing Filter
On the Computer menu, click Savitzky-Golay Smoothing Filter. Appears following form (Fig. 4-24). Click
up/down arrow to select the parameters, key a file name in the Name of Result box, click OK. The result
spectrum will be displayed overlaid with the original one (Fig. 4-25).
Fig. 4-24
Fig. 4-25
4.3.2.10 Resample
Click on the toolbar. The following dialogue box will be displayed (Fig. 4-26). Click Up/Down arrow
to select Sample times. Click OK. The new spectrum displays (Fig. 4-27).
Fig. 4-26
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Operation
Fig. 4-27
Click on the toolbar. The following dialogue box will be displayed (Fig. 4-28). Click the down arrow
next to File 1 to select a spectrum and define it as source 1. Select a spectrum for File 2 in the same way. It
will not allow you to select the same spectrum twice. Key in a name for the Result spectrum and click OK.
The result spectrum will be displayed on the screen (Fig. 4-29).
UV-Vis Analyst will only add, subtract, multiply and divide two spectrums that are already
displayed on the screen. Before arithmetic processing, load or collect two spectrums from
memory.
Fig. 4-28
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Operation
Fig. 4-29
Click on the toolbar. The following dialogue box will be displayed (Fig. 4-30). Click the down arrow
next to File 1 to select a spectrum and define it as source 1. Select a spectrum for File 2 in the same way. It
will not allow you to select the same spectrum twice. Key in a name for the Result spectrum and click OK.
The result spectrum will be displayed on the screen (Fig. 4-31).
Fig. 4-30
- 24 -
Operation
Fig. 4-31
Click on the toolbar. The following dialogue box will be displayed (Fig. 4-32). Click the down arrow
next to File 1 to select a spectrum and define it as source 1. Select a spectrum for File 2 in the same way. It
will not allow you to select the same spectrum twice. Key in a name for the Result spectrum and click OK.
The result spectrum will be displayed on the screen (Fig. 4-33).
Fig. 4-32
- 25 -
Operation
Fig. 4-33
Click on the toolbar. The following dialogue box will be displayed (Fig. 4-34). Click the down arrow
next to File 1 to select a spectrum and define it as source 1. Select a spectrum for File 2 in the same way. It
will not allow you to select the same spectrum twice. Key in a name for the Result spectrum and click OK.
The result spectrum will be displayed on the screen (Fig. 4-35).
Fig. 4-34
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Operation
Fig. 4-35
Select the spectrum you want to unload as the Current Spectrum, Click on the toolbar to remove
the spectrum from the display.
Click on the toolbar, appears the Settings to display and print the spectra form, click the Legend
tab (Fig. 4-36), type the information for display.
Fig. 4-36
4.3.3.2 Edit Print Information
Click on the toolbar, appears the Settings to display and print the spectra form, click the Print tab
(Fig. 4-37), type the information for print out.
Fig. 4-37
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Operation
4.4 Time Scanning (Kinetic Analysis)
This chapter tells you how to obtain the absorbance or transmittance value for a sample as a function of
time at a given wavelength.
1. Click on the toolbar, the following dialog box will appear (Fig. 4-38).
Fig. 4-38
2. Click on the toolbar to select the %transmittance mode or click to select the absorbance
mode.
3. Click on the toolbar. A dialogue box will be displayed (Fig. 4-39). Key in the wavelength, total
time (in seconds) and scan step in the above dialog box. The wavelength range should be within 190 to
1100 nm. The upper limit for total time is 100000 seconds. Seven scan intervals can be selected from
0.5S, 1S, 2S, 5S, 10S, 30S and 60S. Click OK.
Fig. 4-39
6. Place a sample in the sample holder. Click on the toolbar. The instrument will start scanning
automatically. The graph will be displayed on the screen during time scanning (Fig. 4-40). You can stop
scanning by clicking .
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Operation
Fig. 4-40
Click on the toolbar, appears the Settings to display and print the spectra form, click the
Dynamic Analysis tab (Fig. 4-41), type the begin time in Time Begin box, type the end time in Time End
box, and type the K factor in K Factor box, click Calculate, the result will be displayed.
Fig. 4-41
Click on the toolbar, appears the Settings to display and print the spectra form, click the Legend
tab (Fig. 4-42), type the information for display.
- 29 -
Operation
Fig. 4-42
Click on the toolbar, appears the Settings to display and print the spectra form, click the Legend
tab (Fig. 4-43), type the information for display.
Fig. 4-43
1. Click on the toolbar, the following dialog box will appear (Fig. 4-44).
Fig. 4-44
2. Click the down arrows of the method to select the test method. Key in the wavelength position in the
Wavelength box. Key in the value of DNA/Protein Conc.
- 30 -
Operation
3. Place a reference in the sample holder. Click on the toolbar to do blank.
4. Click the Sample tab. It will display the following (Fig. 4-45). The control menu contains six buttons:
Start, Delete, Modify, Recalculate, Font and Print.
Fig. 4-45
5. Place a sample in the sample holder. Click Start or to run a new measurement. The display will
change to the following (Fig. 4-46).
Fig. 4-46
6. The UV-Vis Analyst will read the photometric value of sample 1 at the fixed wavelength automatically.
Key in the sample name in the Name box. Click OK after the measurement is complete. The
photometric data for sample 1 will be listed in the sample table.
7. Repeat steps 5-6 to test all samples (Fig. 4-47).
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Operation
Fig. 4-47
- 32 -
Instrument
Validity
5. Instrument Validity
This chapter describes how to perform Instrument Validity.
Fig. 5-1
2. Click the down arrows of the method to select Photometric Validity Test.
3. Type the number of wavelength points in the Number of Points box, or click the up/down arrows next
to the box set the wavelength points. Key in the wavelength position in the Wavelength box and key in
the standard value in the Standard box. Key in the tolerance in the Parameters box.
Fig. 5-2
- 33 -
Instrument
Validity
6. Place the Photometric Standard Filter in sample holder, click to run a new measurement,
appears following form (Fig. 5-3). Click OK to list the data in the table (Fig. 5-4).
Fig. 5-3
Fig. 5-4
Fig. 5-5
2. Click the down arrows of the method to select Wavelength Validity Test.
3. Type the number of wavelength points in the Number of Points box, or click the up/down arrows next
- 34 -
Instrument
Validity
to the box set the wavelength points. Key in the wavelength position in the Wavelength box. Key in the
tolerance in the Parameters box.
Fig. 5-6
6. Place the Wavelength Standard Filter in sample holder, click to run a new measurement,
appears following form (Fig. 5-7). Click OK to list the data in the table (Fig. 5-8).
Fig. 5-7
Fig. 5-8
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Instrument
Validity
5.1.3 Assistant Functions
5.1.3.1 Recalculate
If you change the parameters, you need not remeasure the samples, click button Recalculate to get new
values.
Fig. 5-9
Fig. 5-10
- 36 -
Instrument
Validity
5.3 Spectrum Slitwidth
1. Click on the toolbar to new a sample scan measurement.
, the peak and the spectrum slitwidth value list in the data table (Fig. 5-11).
Fig. 5-11
Fig. 5-12
- 37 -
Assistant
Functions
6. Assistant Function
6.1 Control the Instrument
6.1.1 Connect / Disconnect to Spectrophotometer
Click to connect to spectrophotometer, and appears the following form (Fig. 6-1) if connected
successfully. Click again to disconnect.
Fig. 6-1
6.1.2 Scan System Baseline
You must warm up the W lamp about 10 minutes before measure samples.
You must warm up the D2 lamp for about 20 minutes before measure samples.
Fig. 6-2
If the switching point of the lamps is changed, a new baseline correction must be
performed.
- 38 -
Assistant
Functions
6.1.6 Locate 656.1nm
Keep the light clear. Click UV-Photometer→Locate 656.1nm on the menu, the Spectrophotometer will
search the 656.1nm.
Click , a new dialog box will be displayed as follow (Fig. 6-3). Type in a file name, click Save.
Fig. 6-3
6.2.2 Load a File
Click , the display will change to the following (Fig. 6-4). Select a folder and filename. Click Open to
open the selected file.
Fig. 6-4
6.2.3 Open a File From Instrument
Click , the display will change to the following (Fig. 6-5). Select a file type and filename. Click Open
to open the selected file.
Fig. 6-5
- 39 -
Assistant
Functions
Fig. 6-6
Any characters can be used, but the password is case-sensitive. Ensure you use the same
case when entering characters in both fields. If exactly the same characters are not
entered in both fields, you will be prompted to try again. If you wish to abort setting a
password, clear both fields by deleting all characters there in. Once a password is selected,
the next time you start the UV-Vis Analyst, the following prompt will appear (Fig. 6-7) Input
your password and click Login.
Fig. 6-7
the name in the Name box. Click OK. Click on the toolbar, it will complete measuring automatically.
Fig. 6-8
- 40 -
Assistant
Functions
- 41 -