Microbiology
Microbiology
Microbiology
REVIEW NOTES
CULTURE AND STERILISATION 2
MICROBIOLOGY REVIEW NOTES
CONTENTS
CULTURE AND STERILISATION ...................................................................................................................................... 9
CULTURE ................................................................................................................................................................... 9
STERILISATION........................................................................................................................................................... 9
DISINFECTION ......................................................................................................................................................... 10
BACTERIAL GENETICS .................................................................................................................................................. 11
GENERAL FEATURES OF BACTERIA.......................................................................................................................... 11
GRAM POSITIVE AND GRAM NEGATIVE ORGANISMS............................................................................................. 12
LIGAND AND HOST RECEPTORS FOR MICROORGANISMS ...................................................................................... 12
MULTIPLICATION OF BACTERIA .............................................................................................................................. 13
BACTERIAL RESISTANCE .......................................................................................................................................... 13
BIOTERRORISM AND VESICANTS ............................................................................................................................ 14
BACTERIOLOGY ........................................................................................................................................................... 15
GENERAL FEATURES OF BACTERIA.......................................................................................................................... 15
FEATURES OF STAPHYLOCOCCUS ........................................................................................................................... 17
SPECIES OF STAPHYLOCOCCUS ............................................................................................................................... 18
DISEASES CAUSED BY STAPHYLOCOCCUS ............................................................................................................... 19
TOXINS OF STAPHYLOCOCCUS ................................................................................................................................ 19
STAPHYLOCOCCAL FOOD POISONING .................................................................................................................... 20
FEATURES OF STREPTOCOCCUS.............................................................................................................................. 20
SPECIES OF STREPTOCOCCUS.................................................................................................................................. 21
DISEASES CAUSED BY STREPTOCOCCUS ................................................................................................................. 22
TOXINS OF STREPTOCOCCUS .................................................................................................................................. 22
CROSS SENSITIVITY OF STREPTOCOCCAL ANTIGEN ................................................................................................ 23
ENTEROCOCCUS...................................................................................................................................................... 23
PNEUMOCOCCUS.................................................................................................................................................... 23
GENERAL FEATURES OF NEISSERIA ......................................................................................................................... 24
NEISSERIA GONORRHOEA ....................................................................................................................................... 24
NEISSERIA MENINGITIDIS........................................................................................................................................ 25
GENERAL FEATURES OF CLOSTRIDIA....................................................................................................................... 26
CLOSTRIDIUM PERFRINGENS .................................................................................................................................. 26
GAS GANGRENE ...................................................................................................................................................... 27
CLOSTRIDIUM TETANI ............................................................................................................................................. 27
CULTURE AND STERILISATION 3
MICROBIOLOGY REVIEW NOTES
CHOLERA ................................................................................................................................................................. 47
HALOPHILIC VIBRIO ................................................................................................................................................. 47
ATYPICAL MYCOBACTERIA ...................................................................................................................................... 48
GENERAL FEATURES OF RICKETTSIA ....................................................................................................................... 49
ENDEMIC TYPHUS ................................................................................................................................................... 49
EPIDEMIC TYPHUS................................................................................................................................................... 49
SCRUB TYPHUS........................................................................................................................................................ 50
RICKETTSIAL POX..................................................................................................................................................... 50
ROCKY MOUNTAIN SPOTTED FEVER ....................................................................................................................... 50
Q FEVER................................................................................................................................................................... 51
EHRILICHIA .............................................................................................................................................................. 51
CHLAMYDIA............................................................................................................................................................. 51
MYCOPLASMA......................................................................................................................................................... 52
NON VENERAL TREPONEMES.................................................................................................................................. 53
Yaw and Pinta ............................................................................................................................................................. 53
LEPTOSPIRA............................................................................................................................................................. 54
BORRELIA ................................................................................................................................................................ 54
VIROLOGY ................................................................................................................................................................... 55
GENERAL FEATURES OF VIRUS ................................................................................................................................ 55
HERPES VIRUS ......................................................................................................................................................... 57
PARVOVIRUS ........................................................................................................................................................... 58
EBSTEIN BARR VIRUS............................................................................................................................................... 58
CYTOMEGALOVIRUS ............................................................................................................................................... 59
ROSEOLA INFANTUM .............................................................................................................................................. 59
VARICELLA ZOSTER VIRUS ....................................................................................................................................... 59
ADENOVIRUS........................................................................................................................................................... 60
ROTAVIRUS ............................................................................................................................................................. 61
SMALL POX.............................................................................................................................................................. 61
PAPOVA VIRUS ........................................................................................................................................................ 61
POLIO VIRUS............................................................................................................................................................ 62
ENTEROVIRUS ......................................................................................................................................................... 63
COXSACKIE VIRUS.................................................................................................................................................... 63
INFLUENZA VIRUS ................................................................................................................................................... 63
MEASLES ................................................................................................................................................................. 64
CULTURE AND STERILISATION 5
MICROBIOLOGY REVIEW NOTES
MUMPS ................................................................................................................................................................... 65
RABIES ..................................................................................................................................................................... 66
GENERAL FEATURES OF ARBOVIRUS....................................................................................................................... 67
DENGUE .................................................................................................................................................................. 67
CHIKUNGUNYA........................................................................................................................................................ 68
YELLOW FEVER ........................................................................................................................................................ 68
JAPANESE ENCEPHALITIS ........................................................................................................................................ 68
WEST NILE FEVER .................................................................................................................................................... 69
KYASANUR FOREST DISEASE ................................................................................................................................... 69
HANTA VIRUS .......................................................................................................................................................... 69
RESPIRATORY SYNCITIAL VIRUS .............................................................................................................................. 70
REOVIRUS................................................................................................................................................................ 70
RUBELLA .................................................................................................................................................................. 70
FEATURES OF HIV .................................................................................................................................................... 71
TRANSMISSION OF HIV ........................................................................................................................................... 72
EPIDEMIOLOGY OF HIV ........................................................................................................................................... 73
MANIFESTATIONS OF AIDS ..................................................................................................................................... 73
KAPOSI’S SARCOMA ................................................................................................................................................ 74
DIAGNOSIS OF AIDS ................................................................................................................................................ 75
TREATMENT OF AIDS .............................................................................................................................................. 75
PREVENTION OF HIV ............................................................................................................................................... 77
PRIONS AND SLOW VIRUS....................................................................................................................................... 78
MYCOLOGY ................................................................................................................................................................. 79
GENERAL FEATURES OF FUNGI ............................................................................................................................... 79
DIMORPHIC FUNGI.................................................................................................................................................. 80
DERMATOPHYTES ................................................................................................................................................... 80
CRYPTOCOCCUS ...................................................................................................................................................... 80
CANDIDA ................................................................................................................................................................. 81
PNEUMOCYSTIS JEROVECI ...................................................................................................................................... 82
BLASTOMYCOSIS ..................................................................................................................................................... 82
HISTOPLASMOSIS .................................................................................................................................................... 82
ASPERGILLUS........................................................................................................................................................... 83
MUCOR ................................................................................................................................................................... 83
MADURELLA ............................................................................................................................................................ 84
CULTURE AND STERILISATION 6
MICROBIOLOGY REVIEW NOTES
SPOROTRICHOSIS .................................................................................................................................................... 84
CHROMOBLASTOMYCOSIS...................................................................................................................................... 84
PROTOZOA .................................................................................................................................................................. 84
GENERAL FEATURES OF PROTOZOA ....................................................................................................................... 84
ENTAMOEBA HISTOLYTICA ..................................................................................................................................... 85
AMOEBIC MENINGOENCEPHALITIS ........................................................................................................................ 86
GIARDIA................................................................................................................................................................... 86
LEISHMANIA............................................................................................................................................................ 86
TRYPANOSOMA....................................................................................................................................................... 88
TOXOPLASMA.......................................................................................................................................................... 89
BABESIOSIS.............................................................................................................................................................. 90
CRYPTOSPORIDIOSIS ............................................................................................................................................... 90
ISOSPORA ................................................................................................................................................................ 90
CYCLOSPORA ........................................................................................................................................................... 90
BALANTIDIUM COLI................................................................................................................................................. 90
FEATURES OF PLASMODIUM .................................................................................................................................. 91
FEATURES OF MALARIA .......................................................................................................................................... 92
EPIDEMIOLOGY OF MALARIA .................................................................................................................................. 93
DIAGNOSIS OF MALARIA ......................................................................................................................................... 93
TREATMENT OF MALARIA ....................................................................................................................................... 93
HELMINTHS ................................................................................................................................................................. 95
GENERAL FEATURES OF HELMINTH ........................................................................................................................ 95
CLONORCHIS ........................................................................................................................................................... 96
DIPHYLLOBOTHRIUM LATUM ................................................................................................................................. 96
FASCIOLA HEPATICA................................................................................................................................................ 96
FASCIOLOPSIS BUSKI ............................................................................................................................................... 96
ASCARIS................................................................................................................................................................... 97
TAENIA SOLIUM ...................................................................................................................................................... 97
NEUROCYSTICERCOSIS ............................................................................................................................................ 97
TAENIA SAGINATA................................................................................................................................................... 98
ECHINOCOCCUS ...................................................................................................................................................... 98
FEATURES OF FILARIASIS......................................................................................................................................... 99
MANAGEMENT OF FILARIASIS .............................................................................................................................. 100
ENTEROBIUS.......................................................................................................................................................... 100
CULTURE AND STERILISATION 7
MICROBIOLOGY REVIEW NOTES
CULTURE
STERILISATION
DISINFECTION
assessment of
Standard against which disinfectants are measured Phenol
Disinfection of water by routine chlorination can be Precurrent disinfection
classified as
Precurrent disinfection Hand washing, pasteurization of milk,
chlorination of water
Chlorine exerts disinfectant action in Bleaching powder, Halozone tablets, Sodium
hypochlorite
Required amount of bleaching powder necessary to 50 gm/lit
disinfect choleric stools
Disinfection of sputum by Boiling, autoclaving, burning, cresol
Disinfectant used for blood spills Sodium hypochlorite
Most powerful chemical disinfectant Lysol
Ethylene oxide is an Intermediate disinfectant
Disinfectant acting by causing plasma membrane Ammonium compounds
damage
Castellani’s paint for disinfecting skin Phenol, resorcinol, basic fuschin, boric
contains acid, acetone
Frequency of microwaves for disinfection 2450 MHz
Sputum can NOT be disinfected by Chorhexidine
NOT true about spaulding’s criteria Semi critical items need low level disinfection
NOT an disinfectant 100% alcohol
NOT a test to test the efficiency of disinfectant Hugh Leifson test (to differentiate micrococci from
staphlococci)
Most likely cause of infection after Clostridia
disinfection procedure that killed
vegetative cells but does not kill spores
BACTERIAL GENETICS
MULTIPLICATION OF BACTERIA
BACTERIAL RESISTANCE
Bacteria may acquire characteristics by Taking up soluble DNA fragments across their cell wall,
through bacteriophage, through conjugation
Antibiotic resistance MC mechanism is production of neutralizing enzymes
by bacteria, Complete elimination of target is the
mechanisms by which enterococci develop resistance to
vancomycin, Alteration of target lesions lead to
development of resistance in pneumococci, Drug
resistance commonly acquired horizontally
Bacterial drug resistance in tuberculosis is via Mutation
MDR acts by Cause efflux of drug
Tranferable resistance High degree of resistance, Involves resistance to
multiple drug, Plasmids play a role
F factor integrates with bacterial chromosome to form Hfr
Ability to form or grow in multicellular masses Biofilm
Phenomenon responsible for antibiotic resistance in Biofilm formation
bacteria due to slime production
Bacteria can NOT acquire characteristics by Incorporating part of host DNA
NOT true about antibiotic resistance Plasmid mediated antibiotic resistance is always
transmitted vertically
Not used to introduce genome into the bacteria FISH
NOT true about Bacteriophage It transfers only by chromosomal gene
Does NOT transfer drug resistance Hfr
Organ of attachment of bacteria Fimbriae
BACTERIAL GENETICS 14
MICROBIOLOGY REVIEW NOTES
Category A bioterrorism agents Anthrax, Botulism, plague, small pox, tularemia, viral
hemorrhagic fever
Category B bioterrorism agents Brucellosis, Epsilon of clostridium perfringens, Glanders
(Burkholderia mallei), Melidiosis, Psittacosis, Q fever,
Ricinus communis, Straphylococcal enterotoxin B, Typhus
fever, viral encephalitis, food safety threat, water safety
threat
Category C bioterrorism agents Nipah, Hanta, SARS and emerging infections
Strain used in anthrax bioterrorism Ames strain
Vesicants Mustard, lewisite, phosgene
Vesicants Mechlorethamine, vincristine,
doxorubicin, BAL, phosgene oxime
Treatment of mechlorethamine induced Thiosulphate
vesicles
BACTERIOLOGY 15
MICROBIOLOGY REVIEW NOTES
BACTERIOLOGY
Stool examination is required for diagnosis of infection Staphylococcal food poisoning, Clostridia, Shigella,
with Campylobacter, Enterobius vermicularis
Pus cell in diarrhea seen in Shigella, campylobacter
Microorganisms invading GIT causing gasteroenteritis Shigella, Vibrio parahemolyticus, Campylobacter,
Salmonella
Biosafety precaution grade III is followed in Human influenza virus, Coxiella burnetti,
Mycobacterium tuberculosis
Organism known to survive intracellularly N.meningitits, Salmonella typhi, legionella
pneumophilia
Intracellular organisms Virus, Chlamydia, rickettsia
Obligatory intracellular Chlamydia
Obligate intracellular parasites Prions, virus, rickettsia, chlamydia
Rhabdomyolysis is associated with Clostridium perfringens, Streptococcus, Clostridium
tetani
F fever Spirillium minus, Leptospira canicola, streptobacillus
moniliformis
Sodoku Spirillum infection
Rat bite fever is caused by Spirillum minus
Rat bite fever is caused by Streptobacillus moniliformis
Haverhill fever is caused by Streptobaciilus moniliformis
Strongly urease positive H.pylori > Proteus
Urease positive bacteria Proteus, klebsiella, staphylococci
Ureaplama urealyticum Non gonococcal urethritis, epididymitis, bacterial
vaginosis
Acinetobacter baumannii Combat related infection in Iraq and Afghanistan, resistant,
treated with sulbactam, carbopenem resistant
Acinetobacter baumannii is treated with colistin and
polymyxin
Superinfection is common with Immunocompromised host
Treatment for aeromonas infection Ciprofloxacin
Treatment for chrysobacterium infection Fluoroquinolones
FEATURES OF STAPHYLOCOCCUS
SPECIES OF STAPHYLOCOCCUS
TOXINS OF STAPHYLOCOCCUS
FEATURES OF STREPTOCOCCUS
SPECIES OF STREPTOCOCCUS
TOXINS OF STREPTOCOCCUS
ENTEROCOCCUS
PNEUMOCOCCUS
NEISSERIA GONORRHOEA
NEISSERIA MENINGITIDIS
CLOSTRIDIUM PERFRINGENS
GAS GANGRENE
CLOSTRIDIUM TETANI
MANAGEMENT OF TETANUS
PREVENTION OF TETANUS
Complete immunization against tetanus 10 years ago, Human tetanus globulin and single dose of toxoid
clean wound without any laceration injury sustained 2.5
hours ago
Active immunity offered by tetanus toxoid is effective 100% of patients
nearly
Administration of Tetanus antitoxin serum Neutralizes toxin
Neonatal tetanus is said to be eliminated when the rate < 0.1 per 1000
is
CLOSTRIDIUM BOTULINUM
BOTULISM
CORYNEBACTERIUM DIPHTHERIA
FEATURES OF DIPHTHERIA
MANAGEMENT OF DIPHTHERIA
HEMOPHILUS
BORDETELLA PERTUSSIS
BRUCELLA
BARTONELLA
ACTINOMYCES
NOCARDIA
LISTERIA
BACILLUS ANTHRACIS
BACILLUS CEREUS
LEGIONELLA
CAMPYLOBACTER
HELICOBACTER
Helicobacter pylori Even with chronic infection, urease breath test remains
positive. H.pylori remains life long if untreated,
Endoscopy is diagnostic. Toxigenic strains usually cause
ulcer, 75% of ulcers associated with H.pylori, Medical
therapy is the treatment of choice
H.pylori Gram negative bacilli, curved rod, flagellated. Causes
chronic gastritis in adults due to reinfection, Treatment
prevents gastric lymphoma, C14 urease breath test is
used in diagnosis, Transmitted from man to man,
fecoorally and by orogastric route. Common in adults of
developing countries, Controlled urease breath is
negative with massive infection, Anti urease antibody
are produced only by invasive strains, Urease activity
provide protective environment to the bacilli
H. pylori Vacuolated cytotoxin
H.pylori found in Mucosa
NOT true about H.pylori It should be eradicated in all cases whenever detected
Helicobacter pylori NOT associated with Gastric leiomyoma
Most sensitive test for H.pylori Rapid urease test
PASTEURELLA
FRANSCIELLA
YERSINIA
PSEUDOMONAS
BURKHOLDERIA
E.COLI
Many E.coli isolated from UTI Attach to uroplakin by mannose binding type I pili
E.coli Labile toxin in ETEC act via CAMP, UTI causing E.coli
attaches through pili, EIEC invasiveness under plasmid
control
E.coli Aerobe and facultative anaerobe, E.coli is motile by
peritrichate flagella
E.coli Non capsulated
E.coli attached to surface with the help of Fucose
Lactose fermenting colonies on EMB agar E. coli
Serotype of E.coli causing hemorrhagic colitis O157:H7
Enterohemorrhagic E.coli Hemolytic uremic syndrome
EHEC Ferments sorbitol, Causes HUS, Elaborates shiga like
exotoxin
Enteroaggregative E.coli Persistent diarrhea
Stacked brick pattern of adherence Enteroaggregative E. coli
Enterotoxigenic E.coli Traveller’s diarrhea
BACTERIOLOGY 43
MICROBIOLOGY REVIEW NOTES
PROTEUS
SALMONELLA
TYPHOID
SHIGELLA
FEATURES OF VIBRIO
locality
Cholera red reaction is tested by adding Sulphuric acid
Selective media and best suitable media for vibrio TCBS
Transport medium for Cholera VR Medium
Selective medium for vibrio cholera TCBS-Thiosulphate, Citrate, Bile salt, Sucrose
CHOLERA
HALOPHILIC VIBRIO
ATYPICAL MYCOBACTERIA
M.marinum
NOT a treatment of MAC (avium) Pyrazimanide
ENDEMIC TYPHUS
EPIDEMIC TYPHUS
SCRUB TYPHUS
RICKETTSIAL POX
Q FEVER
EHRILICHIA
CHLAMYDIA
MYCOPLASMA
LEPTOSPIRA
BORRELIA
VIROLOGY
choriomeningitis
Transovarian transmission is seen in Bunyaviridae eg. Nairo virus, Hanta virus
Bunyaviridiae cause Orapouche, Punta toro infection, Sandfly fever, Toscana
fever
Ganjam virus belongs to Bunyaviridae
Mayor fever is transmitted by Heamagogus virus
Ebola virus Flavivirus
Bowl of sphagetti appearance Ebola virus
Ebola virus is diagnosed by Bromide green dye for PCR
HERPES VIRUS
Herpes group virus Ether sensitive, may cause malignancy, HSV II involve
below diaphragm
Lipid envelope is found in Herpes virus
HSV is a Double stranded DNA virus
Varicella, EBV belong to Herpes virus
Focal degeneration (pocks in Herpes
chorioallantoic membrane)
Cold sore is caused by HSV-1
Encephalitis is caused by HSV 1
Scrum pox is common in Rugby players
HSV II Primary infection is usually widespread, Recurrent
attacks are due to reactivation of latent infection,
Encephalitis can be caused by HSV II, Newborn can
acquire infection via birth canal at the time of labour,
Treatment is with acyclovir
Neonatal herpes is caused by HSV II
Virus B6-7 is causative agent in Focal encephalitis
Roseola infantum or Exanthem subictum is caused by HHV 6
HHV 6B cause Focal encephalitis
Nagayama spot Exanthema subictum
Rash usually appears after fever has Exanthema subictum and erythema
subsided infectiosum
Kaposi sarcoma caused by HHV8
Castleman disease is caused by HHV- 8
Herpetic whitlow in Finger
NOT a treatment of herpetic whitlow Surgery
Herpetic gladiatorum Wrestler
Herpes virus may remain dormant in Sacral ganglia
Genital herpes simplex can be diagnosed by Tzank smear
Biopsy of herpes simplex viral lesion Multinucleated keratinocytes
Cowdry A intranuclear acidophilic Herpes simplex, varicella zoster
inclusion bodies
Drug of choice for Herpes simplex Acyclovir
Acyclovir Inhibits DNA synthesis and viral replication, low toxicity
for host cells, renal impairment necessitates dose
reduction
VIROLOGY 58
MICROBIOLOGY REVIEW NOTES
PARVOVIRUS
EBV HHV 4
EBV belongs to Herpes group
EBV Double stranded DNA virus
EBV Gp350 binds to CD21
Virus spreading through both EBV
hematogenous and neural route
Infectious mononucleosis is caused by Epstein barr virus
Diseases associated with EBV Infectious mononucleosis, Nasopharyngeal carcinoma,
Oral hairy leukoplakia, Hodgkin’s and Non Hodgkin’s
lymphoma, Ca tonsil, Burkitt’s lymphoma
Infectious mononucleosis is caused by EBV
Oral hairy leukoplakia is associated with EBV
Patient with sore throat having positive paul bunnel Epstein Barr virus
test
Lymphoid interstitial pneumonitis in HIV infected EBV
individual is commonly caused by
Epitrochlear lymphadenopathy is EBV
associated with
African Burkitt’s lymphoma is caused by EB virus
EBV cause autoimmunity by Polyclonal B cell activation
Sore throat and positive paul bunnel test EBV
VIROLOGY 59
MICROBIOLOGY REVIEW NOTES
CYTOMEGALOVIRUS
Cytomegalovirus is HHV 5
Post kidney transplantation caused by CMV
Mononucleosis like syndrome is caused by CMV
MC presentation of congenital CMV Hepatosplenomegaly
Maternal viremia most commonly spreading to fetus in CMV
utero
CMV rarely cause CNS infection
In CMV infection of brain, viruses are present in WBC
Owl eye appearance on picture CMV
Congenital CMV infection Hepatosplenomegaly
Great concern for CMV infection 2nd month after transplantation
Congenital CMV infection in infant established by Urine culture of CMV, Intranuclear inclusion bodies in
hepatocytes, CMV viral DNA in blood by polymerase
chain reaction
Does NOT establish diagnosis of congenital CMV in IgG CMV antibodies in blood
neonate
Drug used in CMV infection Gancyclovir
Famciclovir is a prodrug of Penciclovir
ROSEOLA INFANTUM
A patient had fever and coryza for last 3 days developed Roseola infantum
maculopapular erythematous rash which lasted for 48
hours and disappeared without leaving behind
pigmentation is commonly due to
Roseola infantum HHV 6 and 7, Rash appear in trunk, During
deferverescence rash appears
Fever stops and rash begins is diagnostic of Roseola infantum
ADENOVIRUS
ROTAVIRUS
Rota virus Culture can NOT be done, Rota B can grow in cell
culture, Rota C can cause diarrhea in children
Segmented gene Rota virus
Rota virus VP6, virus shed in stool
Reassortment is typically seen in Rotavirus
Virus enterotoxin detected as a possible mechanism of Rota virus
action
Rota virus commonly affects Children
Rota virus infection in children below 5 years
MC cause of gastroenteritis in children Rotavirus
Rota virus Terminal ileum villi destroyed
Diarrhea in Rotavirus infection due to Decreased absorption by villi
Rota virus are responsible for Infantile diarrhea
Rota virus detected by Antigen in stool
Rota virus is diagnosed by Presence of antigen in stools by ELISA
Best vaccine for Rota virus Genetic reassortment
SMALL POX
PAPOVA VIRUS
Papova virus DNA virus, non enveloped icosahedral virus, warts and
VIROLOGY 62
MICROBIOLOGY REVIEW NOTES
papilloma, SV 40 is oncogenic
Warts Viral warts resolve spontaneously, Plantar warts should
not be excised, Callosity are formed occupationally
POLIO VIRUS
ENTEROVIRUS
COXSACKIE VIRUS
INFLUENZA VIRUS
MEASLES
Moribilli Measles
Measles Single stranded negative sense RNA virus
Measles virus Paramyxovirus
Syncitium formation is associated with Measles
NOT a teratogenic virus Measles
Measles Higher secondary attack rate, Only one strain cause
infection, Infectious in prodromal period, Infections
confer lifelong immunity, Meningoencephalitis can
precede parotitis, Flaring up of TB
Measles Fever occurs 7-10 days after occurrence of infection,
immunity develops after 7 days of vaccination, single
dose of vaccine gives 95% protection
Measles Immunosuppression
Measles Koplik spots appear in prodromal stage, Fever stops
after onset of rash
Epidemiology of measles Secondary attack rate of measles is less than that of
rubella
VIROLOGY 65
MICROBIOLOGY REVIEW NOTES
MUMPS
RABIES
Arboviral disease KFD, West Nile fever, Ganjam virus, Puumala virus
Arboviruses are Heat labile
Suckling mice used for cultivation of Arbovirus
Arboviral diseases Yellow fever, Japanese encephalitis, Dengue
Only group A arbovirus causing epidemic disease in Dengue, Chikungunya fever
India
DENGUE
CHIKUNGUNYA
YELLOW FEVER
JAPANESE ENCEPHALITIS
HANTA VIRUS
REOVIRUS
RUBELLA
rd
3 day disease Rubella
8 years following URTI developed maculopapular rash Rubella
rd
on jaw spreading on to trunk which cleared on 3 day
without desquamation and tender postauricular and
suboccipial lymphadenopathy
Maculopapular rash on jaw cleared on 3rd day without Rubella
desquamation and tender postauricular and
suboccipital lymphadenopathy
Exanthema spreads from hairline to downwards and clears Rubella
as it spreads
Rubella causes Microphthalmia, Congenital cataract, Salt pepper
fundus
Multiple sites of narrowing of peripheral pulmonary Rubella
arteries
Forscheimer spots are seen in Rubella, infectious mononucleosis, scarlet fever
Incubation period of rubella 2-3 weeks
Complications of Rubella Arthritis, Arthralgia, Encephalitis
Uncommon clinical feature of Rubella Encephalitis
Most severely affected in Rubella infection Unborn child
MC age group affected by rubella Women of child bearing age
Average incubation period of Rubella is equal to that of Sleeping sickness
Features of Congenital rubella PDA, Deafness, Cataract
Congenital rubella syndrome is associated with VSD, PDA
Multiple sites of narrowing of peripheral pulmonary artery Rubella embryopathy
NOT true about congenital rubella Infection after 16 weeks of gestation results in major
congenital defects
Risk of fetal damage in rubella is maximum if mother 6-12 weeks of pregnancy
gets infected in
Chance of transmission of rubella In 9 – 10 weeks 40%
pregnancy
Rubella infected a mother at 10-14 weeks of Gestation, 5-10%
Chances of congenital malformation
NOT true about rubella Incubation period more than 10 days
VIROLOGY 71
MICROBIOLOGY REVIEW NOTES
FEATURES OF HIV
infection
Seroconversion in HIV 4 weeks
Window period Antibody is absent
Window period of AIDS 3-12 weeks
Window period in HIV Period between onset of infection and clinically
detectable level of antibodies
HIV antibodies show Antibody enhancement, bystander killing
CNS infection in HIV is caused by Cryptococcus,Toxoplasma
MC site of lymphoma in AIDS patient CNS
Most characteristic CNS lesion of HIV Microglial nodule
MC CNS Neoplasm in HIV Primary CNS Lymphoma
Common late CNS complication of HIV Dementia
Most common in childhood AIDS Recurrent chest infection with typical
organisms
NOT a feature of CNS involvement in AIDS Vasculitis
NOT a cause of seizure in HIV patient PML
NOT found in CNS in case of AIDS Inclusion bodies
Most common vascular tumour in AIDS patient Kaposi sarcoma
In AIDS, lymphadenopathy is most often due to Non specific enlargement of lymphnode
Cardiovascular complication of HIV Pericardial effusion, cardiac tamponade,
cardiomyopathy
NOT a cardiovascular complication of HIV Aortic aneurysm
Malignancy associated with AIDS Kaposi sarcoma, CNS lymphoma, Non hodgkin’s
lymphoma
Cancer NOT seen in AIDS Carcinoma Colon
CMV retinitis in HIV when CD4 below 50
Cryptococcus neoformans infection in HIV 200
when CD4 below
Cotrimoxazole prophylaxis in AIDS in indicated Cryptosporidiosis
NOT a feature of AIDS Toxocara uveitis
NOT an opportunistic infection of AIDS Rhizopus
NOT common in HIV infection Aspergillus
NOT seen in childhood AIDS Kaposi sarcoma
Body fluid having maximum HIV load Breastmilk
Diagnosis of AIDS according to WHO 2 major signs and 1 minor sign
TRANSMISSION OF HIV
mother’s milk
Percentage of transplacental transmission of AIDS 30-40%
Maximum risk of transmission of HIV Blood transfusion
Intravenous drug abusers in HIV is a High risk group
NOT a high risk group for HIV transmission Healthcare workers
NOT a method of transmission of HIV Intact skin
Least common mode of HIV transmission Homosexual
NOT an effective strategy to prevent mother to child Vaginal cleansing before delivery
transmission of HIV
EPIDEMIOLOGY OF HIV
MANIFESTATIONS OF AIDS
KAPOSI’S SARCOMA
DIAGNOSIS OF AIDS
TREATMENT OF AIDS
PREVENTION OF HIV
MYCOLOGY
DIMORPHIC FUNGI
DERMATOPHYTES
CRYPTOCOCCUS
CANDIDA
PNEUMOCYSTIS JEROVECI
Pneumocystis carnii is a fungus because rRNA, mitochondrial protein gene sequence and
presence of thymidylate synthase, cell wall contains
glucans
Pneumocystis jiroveci May be associated with pneumatocele, diagnosed by
sputum examination, cause disease only in
immunocompromised host
Tree in bud appearance in bone marrow transplant Pneumocystis
recipient
Pneumocystitis carnii infection in HIV, if CD4 count <200
Pneumocystis jeroveci Diagnosis is by sputum microscopy
Pneumocystis carnii diagnosed by Silver nitrate staining (Methaneamine silver)
Prevention of pneumocystis jiroveci in HIV TMP/SMX
Treatment of Pneumocystis carnii Cotrimoxazole
Treatment of pneumocystis carnii Pentamidine, dapsone, cotrimoxazole
BLASTOMYCOSIS
HISTOPLASMOSIS
fungus
Disseminated small nodules in chest with calcification Histoplasmosis
Clinical History of farmer, mimics Tuberculosis, Picture Histoplasmosis
of Organism given
Histoplasmosis is associated with Tuberculate macroconidia
Microconidia as well as macroconidia is Histoplasmosis
associated with
Broncholithiasis is associated with Healed histoplasmosis
Methaneaamine silver is used to stain Histoplasma
Metheneamine silver is used to stain Cryptococcus, histoplasma, pneumocystis
Gold standard for diagnosis of histoplasmosis Culture
ASPERGILLUS
MUCOR
MADURELLA
SPOROTRICHOSIS
CHROMOBLASTOMYCOSIS
PROTOZOA
ENTAMOEBA HISTOLYTICA
AMOEBIC MENINGOENCEPHALITIS
GIARDIA
LEISHMANIA
TRYPANOSOMA
TOXOPLASMA
BABESIOSIS
CRYPTOSPORIDIOSIS
ISOSPORA
CYCLOSPORA
BALANTIDIUM COLI
FEATURES OF PLASMODIUM
Stages seen in peripheral smear of falciparum malaria Gametocytes, accole form and ring form
Band shaped trophozoites are seen in Plasmodium malariae
Nephrotic syndrome is caused by Plasmodium malariae
Fever every 4th day is associated with Plasmodium malariae
NOT seen in falciparum malaria Schizonts
Monkey malaria of human is caused by Plasmodium knowlesi
FEATURES OF MALARIA
EPIDEMIOLOGY OF MALARIA
DIAGNOSIS OF MALARIA
TREATMENT OF MALARIA
Chemoprophylaxis for Malaria is given Workers for short period in endemic area, traveler’s
from non endemic to endemic area, pregnant woman in
high endemic area
NOT used for prophylaxis of malaria Doxycycline
Pyronaridine is Antimalarial
Best associated with lumefantrine Antimalarial
Drug of choice for malaria in pregnancy Chloroquine
Bull’s eye maculopathy Chloroquine
Long term use of chloroquine Lichenoid eruptions,visual deterioration,T wave change
PROTOZOA 94
MICROBIOLOGY REVIEW NOTES
in ECG
Side effects of chloroquine Hypotensive shock, retinopathy
Antimalarial of choice in chloroquine resistant pregnant Quinine
woman
Treatment for drug resistance in malaria Quinine
Quinidine acts mainly on Trophozoite stage
Can cause hypoglycemia in a patient of severe cerebral Quinine
malaria on treatment
Resistant falciparum malaria in the pediatric age group Clindamycin
is treated by
In chloroquine resistant zone the presumptive Sulphadoxine + pyrimethamine
treatment of malaria to be given is
Antimalarial which is a slow acting schizonticide Pyrimethamine
Presumptive treatment of malaria in a chloroquine Sulphalene and pyrimethamine
resistant area
Drug of choice in chloroquine resistant pregnant Pyrimethamine
woman in 1st trimester
Prophylaxis of chloroquine resistant malaria Mefloquine
Treatment of Multidrug resistant Plasmodium Mefloquine
falciparum
Food enhances the rate and absorption of Mefloquine
Drug that be given simultaneously or with Halofantrine
in 3 weeks of mefloquine
Antimalarial causing neuropsychiatric adverse reaction Mefloquine
Treatment of choice for severe falciparum malaria Intravenous artesunate
Drug of choice in severe complicated falciparum malaria Artesunate
NOT an accepted regimen Artesunate + quinine
Drawback of artesunate Rapid recrudescence of malaria
Tissue schizonticide preventing relapse of vivax malaria Primaquine
Radical cure of malaria is done with Primaquine
In high risk areas, the radical treatment for plasmodium 0.25 mg/kg body weight
vivax infection after microscopic confirmation is
administration of tablets primaquine in the daily dosage
of
Used for radical cure of malaria Primaquine
Contraindicated in pregnancy Primaquine
Prophylaxis of malaria in an area with P.vivax Primaquine
Person wants to visit a malaria endemic of low level Proguanil + chloroquine
chloroquine resistant falciparum malaria
Safe for use in pregnancy Proguanil
Antimalarial effective in pre erythrocyte phase in liver Proguanil
Malrone Atovoquone + Proguanil
Prophylaxis of chloroquine, mefloquine resistant malaria Atovoquone/proguanil
Prophylaxis for malaria 1-2 weeks before travel
Marked reduction in asexual parasitemia in 48 hours Type 2 resistance
without complete clearance in 7 days
Synthetic cocktail vaccine SPf66 has shown potential for Falciparum malaria
protection against
HELMINTHS 95
MICROBIOLOGY REVIEW NOTES
HELMINTHS
Nematodes are differentiated from other worms by Absent fragmentation, Separate sexes, Cylindrical body,
GIT is formed completely
Cestode (tapeworm) Progressively elongating chain of proglottids (Strobilia),
length can be upto 1000 – 2000 proglottids
Most anterior segment of tapeworm Scolex
Helminthic infection resembling Crohn’s disease Anisakiasis
Dwarf tapeworm Hymenolepis nana
Smallest tapeworm Hymenolepis nana
Hymenolepis nana No intermediate host
Egg containing polar filaments arising Hymenolepis nana
from either end of embropore
Organisms with filariform larva as infective agent Hookworm, Strongyloides
Heterophyes heterophyes is an Intestinal fluke
Transmission of biliary flukes, intestinal flukes and Metacercaria, ingestion by fish
paragonimus westermani
Dew itch/Ground itch produced due to larva of Strongyloides stercoralis, Ankylostoma, Necatar
Eggs concentrated in saturated salt Trichuris, H. nana, E.granularis
solution
Float in saturated salt solution Fertilized eggs of ascaris, Larva of strongyloides,
Trichuris trichura, H.nana
Does NOT float in saturated salt solution Clonorchis sinensis
Eggs having hexacanth embryo Taenia solium, Taenia saginata, Hymenolepis nana
7 year boy intermittent abdominal cramps, loose stools Opisthorcis viverrani
on stool examination ova of size 100 micrometre. NOT a
cause
African eye worm Loa loa
Calabar swelling is caused by Loa Loa
Lizard skin Loa loa
Observation of worm under conjunctiva and Calabar Loiasis
swellings is diagnostic for
Raccoon ascaris Baylisascarias procyonis
Helminth found in mesentry Mansonella
Visceral larva migrans caused by Toxocara canis
Visceral larval migrans is treated by Thiabendazole
Drug of choice for Cutaneous larva migrans Thiabendazole
Small intestine helminth Ascaris, Ankylostoma, Necatar
Larva found in stool in Ankylostoma, Necatar, Strongyloides
Parasites penetrate through skin and enter into body Ankylostoma, Strongyloides, Necatar
Parasites causing lung infection Paragonimus westermani, Echinococcus granulosus and
Echinococcus multilocularis
Pigs are reservoir for Taenia solium, Trichinella spiralis
Fish act as intermediate host in Diphyllobothrium latum, Clonorchis sinensis
Post saline purge is used in Niclosamide and T.solium infection
Intermediate host for Paragonimus Fish
HELMINTHS 96
MICROBIOLOGY REVIEW NOTES
westermani
Man snail crab man cycle in Paragonimus westermani
Paragonimus westermani is NOT seen in Jammu and Kashmir
Treatment of lung fluke Praziquantel
Nitrazoxanide is appoved for Cryptosporidium
Mechanism of action of Nitrazoxanide Interferes with pyruvate ferredoxin dependent electron
transfer reaction
CLONORCHIS
DIPHYLLOBOTHRIUM LATUM
FASCIOLA HEPATICA
FASCIOLOPSIS BUSKI
ASCARIS
Source of infection of Ascaris lumbricoides in man Vegetables contaminated with eggs containing larval
forms
Associated with normal hemoglobin and Ascaris
hemocrit
Does NOT cause malabsorption Ascariasis
Ascaris lumbricoides cause deficiency of Vitamin A
Medusa head colony on X ray Round worm infestation
Drug of choice for ascariasis Albendazole
Round worm infection best treated with Albendazole
Mechanism of action of albendazole Binds to beta tubulin and inhibits polymerization
Causes flaccid paralysis of ascariasis Piperazine
Drug of choice in worm colic due to ascariasis Mebendazole
Adult dose of bephenium hydroxynaphthoate in the 5 gm
form of single dose
TAENIA SOLIUM
NEUROCYSTICERCOSIS
TAENIA SAGINATA
ECHINOCOCCUS
Special feature of echinococcus among cestodes Both intermediate and definite host are animals
Tinea echinococcus causes Hydatid cyst
Hydatid cyst of liver is caused by Echinococcus granulosus and Echinococcus
multilocularis
Hydatid cyst is caused by Echinococcus granulosus
Transmitted by egg ingestion Hydatidosis
Intermediate host for Hydatid disease Man
Vital layer of hydatid cyst Germinal layer
Only living part of Hydatid cyst Germinal epithelium
Fluid filling hydatid cyst is secreted by Germinal layer
Hydatid cyst commonly occur in Liver
Hydatid cyst of lung common in Lower lobe
Dropping water lilly sign is seen in Liver
Signs of hydatid cyst Cart wheel appearance, cyst in cyst sign,
floating membrane sign
Sensitivity of casoni test 90%
Hydatid cyst ELISA, Casoni test, False positive reaction in CFT
ARE-C5 in countercurrent mechanism Hydatidosis
NOT a scolicidal agent 0.5 % Silver nitrate
HELMINTHS 99
MICROBIOLOGY REVIEW NOTES
FEATURES OF FILARIASIS
MANAGEMENT OF FILARIASIS
ENTEROBIUS
Seatworm Enterobius
MC presenting symptom of threadworm infection Abdominal pain
Autoinfection is seen in Enterobius
Nematode residing in caecum and appendix Enterobius vermicularis
Eggs causing intense pruritis in perianal skin Enterobius vermicularis
Does NOT pass through lung Enterobius vermicularis
Cellophane test for Enterobius vermicularis
Feces examination NOT useful in diagnosing Enterobius
TRICHINELLA
GUINEA WORM
STRONGYLOIDES
SCHISTOSOMA
TRICHURIS
HOOKWORM