Biology Notes IB Free Response
Biology Notes IB Free Response
Biology Notes IB Free Response
Topic 1
(1.2) State the functions of the following organelles of a eukaryotic animal cell: lysosome, Golgi
apparatus, free ribosomes, plasma membrane, rough endoplasmic reticulum.
Eukaryote Prokaryote
Mitochondria No mitochondria
MUST HAVE:
· The phospholipid as a bilayer- double row of opposing phospholipids, tails on the inside.
· Integral protein shown crossing bilayer
· Peripheral protein shown on surface
· Cholesterol is embedded in bilayer and smaller than the hydrophobic tail
(1.3) Explain how the properties of phospholipids help cell membranes separate aqueous
environments in cells.
· The phosphate head is glycerol and phosphate and the tails are fatty acid chains
· The heads are hydrophilic and the tails are hydrophobic
· Hydrophilic heads are soluble in water while the hydrophobic tails are attracted to each
other, leading to the formation of a bilayer in water.
· The stability in the double layer is created because the heads on the outer edge are
attracted to water and the tails are attracted to each other
· The phospholipid bilayer is flexible because of the attraction of non-polar tails to each
other
· The fluidity allows the membranes to change shape
(1.4) Explain how vesicles are used to transport proteins within a eukaryotic cell.
(1.4) Outline the role of proteins in active and passive transport of molecules through
membranes
(1.6) Mitosis can only occur when the DNA of a cell has been replicated. Draw the stages in
mitosis.
Topic 2
(2.2) Describe the properties of water that make it a useful component of blood.
- Water is a polar molecule which makes it a versatile solvent because it can dissolve
substances by forming hydrogen bonds with it (example: glucose)
- Water is liquid at body temperature which allows it to transport materials within the body
(example: nutrients, metabolic waste, gases, hormones, blood cells)
- Water has a high specific heat capacity which allows water to carry heat without warming
up, and this allows blood to move heat for homeostasis
(2.3) Plants and animals both use disaccharides and polysaccharides in a variety of ways. State
one function of:
(2.3) Distinguish between the structures of the different types of fatty acids in food.
(2.5) Explain the effect of changes in pH, substrate concentration and temperature on enzyme
activity.
pH:
- Enzymes have an optimal pH, and enzyme activity increases as the pH gets closer to
the optimal level
- Extreme pH denatures enzymes by changing the structure of the active site
Substrate concentration:
- As substrate concentration increases, enzyme activity increases because the collisions
between enzyme and substrate increase
- However, there is a maximal level of enzyme activity because once substrate
concentration increases up to a certain point, all active sites are occupied.
Temperature:
- Enzymes have an optimal temperature at which they work most effectively
- Enzyme activity increases as the temperature gets closer to optimal temperature
- High temperature stops enzyme activity due to irreversible changes in structure
- Denaturation occurs by breaking bonds that changes the shape of the active site
- Enzyme shape is specific to a particular substrate (use the lock and key analogy with a
specific example of an enzyme and substrate)
- An enzyme has a specific tertiary shape essential to its functioning
- This is known as the active site, which binds to the substrate as the active site and the
substrate are complementary due to chemical attraction between enzyme and substrate
and also physical structure
- Thus, an enzyme-substrate complex forms
- Denaturation changes the enzyme’s binding ability to a specific substrate
Enzymes speed up biological reactions. Enzymes are substrate-specific. Enzymes lower the
activation energy of a chemical reaction. The substrate binds to the active site and an
enzyme-substrate complex is formed.
(2.8) Explain how carbon dioxide is produced in anaerobic and aerobic respiration.
ANAEROBIC RESPIRATION
- Glycolysis occurs in the cytoplasm of the cell
- 6-carbon glucose molecule is transformed into 2 molecules of pyruvate (pyruvate
molecule is a 3-carbon compound)
- Pyruvate is transformed into carbon dioxide and ethanol in alcoholic fermentation
- Lactic fermentation does not produce carbon dioxide
AEROBIC RESPIRATION
- Pyruvate compound transferred to acetyl coenzyme A
- Link reaction liberates carbon dioxide
- Aerobic respiration occurs in mitochondria
- Krebs cycle (citric acid cycle) releases carbon dioxide
(2.8) Explain how glucose is used in both anaerobic and aerobic cell respiration.
(2.8) Many cell functions, like the synthesis of macromolecules and transport, require energy in
the form of ATP. Explain how ATP is generated in animal cells.
(2.8) Outline the process of gas exchange necessary for aerobic respiration in a unicellular
eukaryotic organism.
(2.9) Outline the difference in the absorption of red, blue and green light by chlorophyll.
(2.9) Explain how the process of photosynthesis affects carbon dioxide concentrations in the
atmosphere during a typical year and the likely consequences on Earth of the yearly rises in
carbon dioxide.
Consequences:
- Raised levels of carbon dioxide could enhance the greenhouse effect, causing global
warming
- Rising ocean levels due to the melting of polar ice caps
- Changes in the climate
- Ocean acidification
- Alteration of food webs
- Loss of habitat
- Can lead to extinction
(2.9) Outline the effect of carbon dioxide concentration on the rate of photosynthesis and how
this can be measured by carbon dioxide uptake.
(2.9) Producers extract phosphates and nitrates from soil. Outline how these ions are used in
the synthesis of organic molecules.
- Translation is the conversion of the base sequence on mRNA into an amino acid
sequence
- The mRNA attaches to the ribosome
- Many ribosomes bind to the same mRNA
- mRNA carries codons (triplets of bases) each coding for one amino acid
- The tRNA each have a specific anticodon, and the tRNA carries a specific amino acid
- tRNA anticodon binds to the codon in the mRNA, by complementary base pairing
- A second tRNA binds to the next codon
- The two amino acids bind together and a peptide linkage is formed
- The first tRNA detaches, and the ribosome moves along the mRNA
- Another tRNA binds to the next codon, and this continues until the STOP codon is
reached, causing the release of the polypeptide
(2.7) Describe the genetic code and its relationship to polypeptides and proteins.
(2.7) Describe the polymerase chain reaction (PCR), including the role of Taq DNA polymerase.
- PCR is the process by which a small sample of DNA can be amplified many times
- PCR involves repeated cycling through higher and lower temperatures to promote
melting and annealing of the DNA strands
- The mixture is heated to high temperatures to break hydrogen bonds between strands of
DNA to separate the double-stranded DNA
- Taq polymerase is an enzyme that has an optimum temperature of 75 degrees Celsius
which extends the nucleotide chain from the primers to amplify the DNA sample
- Taq polymerase can withstand high temperatures without denaturing
Topic 3
(3.1) Explain how a base pair substitution in DNA can cause sickle-cell anemia.
(3.4) Define codominant allele, recessive allele, locus, and sex linkage.
- Codominant allele: alleles that both affect the phenotype when present in a heterozygote
- Recessive allele: an allele that produces its characteristics phenotype only when present
in homozygous state, the trait is expressed only when the dominant allele not present
- Locus: The position of a gene on a chromosome
- Sex linkage: A gene located on a sex chromosome
(3.4) Explain how males inherit hemophilia and how females can become carriers for the
condition.
(3.5) Outline the use of named enzymes in gene transfer using plasmids.
- The DNA from the child, its mother, and its possible fathers are used to establish
paternity for legal reasons, or for divorce, or inheritance
- This could be done also for personal reasons or for self-esteem issues for children,
fathers, or parents.
- The samples of DNA are separated by gel electrophoresis
- The pattern of DNA fragments is produced in a gel and analysed for matches between
the child with its mother and its possible father
- Half the child’s bands will match the father while the other half will match the mother
(3.5) Following fertilisation, cells in the developing embryo differentiate. Outline a technique for
cloning using different animal cells.
- Diploid cells are taken from donor animal and the diploid nucleus from these donor cells
are removed.
- Egg cells are removed from the donor animal and the haploid nucleus are removed from
the egg cells
- The diploid nucleus is fused with the egg cells to form a zygote
- The resulting embryo is implanted in the uterus of the surrogate mother, and a normal
pregnancy and birth are completed
- The offspring is a genetic clone of the donor mother
ARGUMENTS IN FAVOUR:
- Any procedure that reduces pain or suffering can be ethically justified
- Stem cells can be used to replace organs or tissues that have been lost or damaged
thus the quality of a patient’s life can be improved
- Cells can be removed from embryos that have stopped developing and would have died
anyway
- Cells are removed at a stage where no pain can be felt by the embryo
- Therapeutic cloning could be done with embryos from IVF that would otherwise be
destroyed
ARGUMENTS AGAINST:
- Embryonic stem cells are no longer needed as adult stem cells can be used without
causing loss of life
- There is a danger of embryonic stem cells developing into tumour cells
- Every human embryo is a potential human with the right to development
- More embryos may be produced than can be used and so some would be killed
- Any procedure that harms a life can be considered unethical
- Plasmid used for gene transfer is removed from bacteria using restriction enzymes
- A plasmid is a small circle of DNA
- Each restriction enzyme cuts at a specific base sequence and thus creates sticky ends
- The same restriction enzyme is used to cut the DNA with the desired gene
- The desired gene is added to the open plasmid, and DNA ligase is used to join the
complementary sticky ends together to form a recombinant plasmid
- The recombinant plasmid is inserted into the host cell
(3.5) Explain the benefits and risks of using genetically modified crops for the environment and
for human health.
ENVIRONMENT BENEFITS:
- Pest-resistant crops can be made resulting in less spraying of pesticides
- Less fuel is burned in the management of crops
- Longer shelf-life for fruits and vegetables which reduces the risk of spoilage
- A greater quantity can be reaped
- Increased variety of growing conditions
ENVIRONMENT RISKS:
- Non-target organisms can be affected
- Genes transferred to make plants herbicide resistant could spread to wild plants,
resulting in super-weeds
- GMOs encourage a monoculture which reduces biodiversity
HEALTH BENEFITS:
- Nutritional benefits of food could be improved by increasing the nutrient content
- Crops could be produced that lack toxins or allergens
- Crops could be produced to contain edible vaccines to promote disease resistance
HEALTH RISKS:
- Proteins from transferred genes could cause allergic reactions or be toxic
- Antibiotic resistance genes used as markers during gene transfer could spread to
pathogenic bacteria
- Transferred genes could result in unexpected problems
- Clones are genetically identical organisms OR a group of cells derived from a single
parent cell
- In plants, some reproduce asexually through tubers/ bulbs/ runners
- In yeast/ fungi, they reproduce through budding
- Identical twins in humans are clones because they originate from the same cell
Topic 4
(4.2) Ecologists sometimes display data from an ecosystem using a diagram called a pyramid of
energy. Describe what is shown in pyramids of energy.
- Pyramids of energy show the flow of energy from one trophic level to the next in a
community.
- The units of pyramids of energy are energy per unit area per unit time
- The bar width is proportional to the energy stored in the biomass in that trophic level
- The lowest trophic level is that of producers
- The second trophic level is herbivores
- The third trophic level are secondary consumers
- Only 10-20% of energy is passed from one trophic level to the next
- The energy stored in each trophic level decreases proportionally as you go up this level
- The energy pyramid shows that there is a limit to the length of food chains
(4.2) Explain the processes by which energy enters and flows through ecosystems.
(4.3) Discuss the processes in the carbon cycle that affect concentrations of carbon dioxide and
methane in the atmosphere and the consequences for climate change.
(4.4) Aquatic and other environments are being affected by a global rise in temperature. Outline
the consequences of this on arctic ecosystems.
- Global warming results in melting of the polar ice caps and the loss of ice habitats
- Raises sea level causing flooding in coastal areas, destroying coastal habitats
- The warming of habitats would change specific flora/ fauna that can be supported
- Could result in a possible extinction of species
- There could be change in migration patterns of species
- Ecological changes could affect higher trophic levels
- Increased rates of decomposition of detritus from melting permafrost
- Increased success of pest species and pathogens in infection
Topic 5
- Overproduction of offspring leads to competition for limited resources and a struggle for
survival
- These limited resources are water/ space/ food/ mates
- Not every member of the population can survive, and the organisms which are less
adapted will either die or migrate
- Some individuals are better adapted for environmental conditions and they are more
likely to survive and reproduce. This is called natural selection.
- Overpopulation can increase the spread of disease within a population
- Waste products of the population may reach toxic levels
- The environment may exceed its carrying capacity leading to population crash
(6.1) State the source, substrate, products and optimal pH condition for lipase in the human
digestive system.
Source: Pancreas
Substrate: Triglycerides/ lipids/ fats/ oils
Product: Glycerol and three fatty acids
Optimal pH: 7-8
(6.1) Explain how the small intestine moves, digests, and absorbs food.
(6.2) Explain the relationship between structure and function of arteries, capillaries and veins.
ARTERIES:
- Thick walls to maintain the blood flowing at high pressure
- Elastic fibres in the walls gives the artery walls the ability to stretch and recoil
- Smooth muscle layer contracts to maintain pressure
- Narrow lumen maintains high pressure
- Smooth endothelium for efficient transport
VEINS:
- Thin walls to allow skeletal muscles to exert pressure on veins
- Thin outer layer of collagen to provide structural support
- Wide lumen allows great volume of blood to pass
- Valves prevent the backflow of blood
CAPILLARIES:
- Wall has one layer of cells allowing fast diffusion of substances
- Pores allow lymphocytes to exit
- Extensive branching increases surface area for exchange of materials
- Small diameter allows them to fit in between cells
- Narrow diameter increases oxygen diffusion from red blood cells
- Arteries and veins have three layers in their walls- tunica externa, media and intima
- Pressure of blood is low in veins and high in arteries
- Arteries carry blood away from the heart
- The lumen of the artery is small to keep the pressure high
- Arteries have thick muscular walls with elastic fibres to withstand pressure
- Elastic fibres recoil in response to ventricular contraction
- Elastic fibres help maintain pressure between heartbeats
- Veins receive blood from capillaries
- Large lumen of veins so there is less resistance to blood flow
- Valves in veins prevent backflow of blood
- Skin and mucous membranes are the first line of defence against diseases
- Skin is a physical barrier that is waterproof
- Mucous membranes contain lysosomes that destroy pathogens after trapping them
- Stomach acid inhibits the growth of pathogens
- White blood cells ingest pathogens in tissues by phagocytosis
- Lymphocytes produce antibodies that attach to specific antigens and destroys
pathogens
HIV TRANSMISSION
- Fluids from an infected person transmit HIV which may progress to AIDS
- Blood transfusions
- Sharing needles in drug users
- Sexual intercourse
- Breastfeeding
- Transmission from mother to child across the placenta
SOCIAL IMPLICATIONS
- Death of parents leaving orphans
- Families become poor due to expenses in treatment
- Loss of employment
- Parents suffer discrimination
- Families and friends suffer grief
(6.3) Some blood proteins are involved in defence against infectious diseases. Explain the roles
of named types of blood proteins in different defence mechanisms.
(6.5) Membranes of pre-synaptic and post-synaptic neurons play an important role in the
transmission of nerve impulses. Explain the principles of synaptic transmission.
(6.5) Explain the propagation of electrical impulses along a neuron including the role of myelin.
PROS:
- Infertile couples can conceive
- Allows for children who are genetically related to them
- Decision to have children is a conscious one and parents are more likely to be
responsible
- Screening of embryos decreases chance of inherited disease
- Increases reproductive age
- Cancer patients can harvest ova/ sperm before chemotherapy
- Production of extra embryos can be used for research
CONS:
- Potential risks from drug treatment
- IVF is against some religious teachings
- Spare embryos that are killed can be seen as unethical
- Higher risk of birth defects
- expensive
Option D
CAUSES:
- Phenylketonuria is a genetic condition caused by a mutation
- The enzyme phenylalanine hydroxylase is not present
- Phenylalanine is an essential amino acid
- Inability to convert phenylalanine into tyrosine results in a toxic buildup of phenylalanine
in the body which could cause mental disorders
TREATMENTS:
- Requires a diet rich in tyrosine supplements and low in phenylalanine
- Patient should monitor blood phenylalanine levels and monitor growth rates/ intellectual
development
D.4 Explain how electrical signalling in the heart leads to ventricular contraction.