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    Progress Report of MR V.K.singh Information Officer

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    Vinay Singh
    1) Mr. Vinay Kumar Singh submitted a progress report summarizing his activities at the Centre for Bioinformatics in 2009-2010, including publishing 2 international research papers, 1 national research paper, and 1 conference proceeding as a full paper. 2) He also organized a training workshop on protein modeling and simulation techniques and supervised 2 short-term trainees. 3) Additionally, he taught a bioinformatics elective course and provided bioinformatics resources and support to M.Sc. and Ph.D. students at the School of Biotechnology.

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    Progress Report of MR V.K.singh Information Officer

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    Vinay Singh
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    1) Mr. Vinay Kumar Singh submitted a progress report summarizing his activities at the Centre for Bioinformatics in 2009-2010, including publishing 2 international research papers, 1 national research paper, and 1 conference proceeding as a full paper. 2) He also organized a training workshop on protein modeling and simulation techniques and supervised 2 short-term trainees. 3) Additionally, he taught a bioinformatics elective course and provided bioinformatics resources and support to M.Sc. and Ph.D. students at the School of Biotechnology.

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    Major activities of the centre during the year 2009-10

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    Progress Report of Mr V.K.singh Information Officer

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    1) Mr. Vinay Kumar Singh submitted a progress report summarizing his activities at the Centre for Bioinformatics in 2009-2010, including publishing 2 international research papers, 1 national research paper, and 1 conference proceeding as a full paper. 2) He also organized a training workshop on protein modeling and simulation techniques and supervised 2 short-term trainees. 3) Additionally, he taught a bioinformatics elective course and provided bioinformatics resources and support to M.Sc. and Ph.D. students at the School of Biotechnology.

    Copyright:

    Attribution Non-Commercial (BY-NC)
    Download as PDF, TXT or read online from Scribd
    Download as pdf or txt
    156 views2 pages

    Progress Report of MR V.K.singh Information Officer

    Uploaded by

    Vinay Singh
    1) Mr. Vinay Kumar Singh submitted a progress report summarizing his activities at the Centre for Bioinformatics in 2009-2010, including publishing 2 international research papers, 1 national research paper, and 1 conference proceeding as a full paper. 2) He also organized a training workshop on protein modeling and simulation techniques and supervised 2 short-term trainees. 3) Additionally, he taught a bioinformatics elective course and provided bioinformatics resources and support to M.Sc. and Ph.D. students at the School of Biotechnology.

    Copyright:

    Attribution Non-Commercial (BY-NC)
    Download as PDF, TXT or read online from Scribd
    Download as pdf or txt
    of 2

    Progress Report (2010) of Mr.

    Vinay Kumar Singh

    Centre for Bioinformatics, School of Biotechnology, Banaras Hindu


    University, Varanasi-221005
    To Coordinator: Dr. Anil K. Tripathi

    Major activities of the centre during the year 2009-10


    International Research Papers:

    1. In silico characterization of pectate lyase protein sequences from different source organisms
    (2010) Amit Kumar Dubey, Sangeeta Yadav, Manish Kumar,Vinay Kumar Singh, Bijaya Ketan
    Sarangi and Dinesh Yadav. Enzyme Research doi:10.4061/2010/9502230

    2. Alpha-Amylase from germinating soybean (Glycine max) seeds - Purification, characterization


    and sequential similarity of conserved and catalytic amino acid residues (2010) Kumari A, Singh
    VK, Fitter J, Polen T, Kayastha AM. Phytochemistry (71): 1657-1666.

    National Research Papers:

    1. Classification of Rice Seed Storage Proteins using Neural Networks (2010) Soma Marla , Deeksha
    Bharatiya, Madhu Bala, Vinay Singh and Anil Kumar J. Plant Biochemistry & Biotechnology Vol.
    19(1), 123-126.

    Conference proceedings as full papers:

    1. In silico prediction of DNA binding with one finger (DOF) transcription factor genes in Sorghum
    bicolor (2010) Hariom Kushwaha, Subhra Gupta, Deepshikha Mishra, Vinay K Singh and Dinesh
    Yadav published in MNIT conference proceeding 73-79.

    Abstract published: (Poster Presentation)

    1. Ab initio modeling of dna binding with one finger (dof) Transcription factor protein of sorghum
    bicolor by iterative Tasser simulations
    Vinay Kumar Singh, Hariom Kushwaha and Dinesh Yadav
    Published in 6th Solanaceae Genome Workshop
    Page no. 217.

    2. In silico prediction of dna binding with one finger (dof) transcription factor genes in solanum
    tuberosum and lycopersicon esculentum
    Vinay Kumar Singh, Hariom Kushwaha and Dinesh Yadav
    Published in 6th Solanaceae Genome Workshop
    Page no. 218
    3. In Silico Prediction of DNA Binding with one Finger (Dof) Transcription Factor Genes in Sorghum
    bicolor
    Hariom Kushwaha, Shubhra Gupta, Deepshikha Mishra, Vinay K Singh and Dinesh Yadav
    Published in Bioprospecting: Access for sustainable development
    Page no.73

    4. Prediction of transmembrane proteins using Hidden Morkov model on MATLAB platform (2009)
    Navneet chaturvedi, Suddanshu Shanker, P.N. Pandey and Vinay Kumar Singh
    Published in Emerging Trends in Biotechnology (ETBT-2009)
    Page no.266

    Sequence Submitted in NCBI/DDBJ/EMBL

    1. 01 alpha- amylase (GmAMY1) gene from Glycine max.


    Kumari,A., Singh,V.K. and Kayastha,A.
    Acc. No. BK007878

    2. Class 1 integron containing dihydrofolate reductase and aminoglycoside adenyltransferase


    enzyme from Klebsiella pneumoniae strain DF12SA
    Shahi S. K., Singh, V. K. and Kumar, A.
    Acc. No. HQ114261

    Training/ Workshop Organized:

    (a) Protein Modeling & Simulation and Its applications in Biological Sciences” during September
    15th -16th 2009. 36 participants from university itself.

    Short term Training programs:

    (a) In silico investigation of Drought resistance genes in Jowar (Sorghum bicolor) genome
    By: Archana Verma, M.Sc. Bioinformatics, BHU, MMV (3 months).

    (b) Wrky family of transcription factor in rice and sorghum : A genome wide analysis
    By: Kamal Preet Sarna, B. Tech. Biotechnology, IATS, Allahabad (1 month).

    Educational Activities:

    Teaching Elective course: Course No. BTM402, Bioinformatics and Biostatistics.

    The facility is also used by M.Sc. /Ph.D students of School of Biotechnology.

    Vinay Kumar Singh


    Information Officer
    School of Biotechnology

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