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Make Test

The document describes the output of running tests on the MEME motif discovery tool. Several tests passed but the MEME executable crashed on most tests, causing them to fail. The test suite summary reported 71 passed tests, 12 skipped tests, and 25 failed tests due to crashes of the MEME executable being tested.

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Niranjan Shirgaonkar
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86 views3 pages

Make Test

The document describes the output of running tests on the MEME motif discovery tool. Several tests passed but the MEME executable crashed on most tests, causing them to fail. The test suite summary reported 71 passed tests, 12 skipped tests, and 25 failed tests due to crashes of the MEME executable being tested.

Uploaded by

Niranjan Shirgaonkar
Copyright
© © All Rights Reserved
We take content rights seriously. If you suspect this is your content, claim it here.
Available Formats
Download as TXT, PDF, TXT or read online on Scribd
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cp -f src/parallel/meme src/meme; \

cp -f src/parallel/momo src/momo; \
cd tests/scripts; make check
make[1]: Entering directory
'/home/niran/installed_programs/meme_4.12.0/tests/scripts'
make test_driver
make[2]: Entering directory
'/home/niran/installed_programs/meme_4.12.0/tests/scripts'
/usr/bin/sed -e 's%@WHICHPERL@%/usr/bin/perl%' test_driver.pl.in > test_driver
chmod +x test_driver
make[2]: Leaving directory
'/home/niran/installed_programs/meme_4.12.0/tests/scripts'
make check-TESTS
make[2]: Entering directory
'/home/niran/installed_programs/meme_4.12.0/tests/scripts'
make[3]: Entering directory
'/home/niran/installed_programs/meme_4.12.0/tests/scripts'
PASS: ama1
PASS: ama2
PASS: ame1
PASS: centrimo1
PASS: create-priors1
PASS: create-priors2
PASS: dreme1
PASS: dreme2
PASS: dreme3
PASS: dreme4
PASS: fasta-center1
PASS: fasta-dinucleotide-shuffle1
PASS: fimo1
PASS: fimo2
PASS: fimo3
PASS: fimo4
PASS: glam2_1
PASS: glam2scan1
PASS: gomo1
PASS: gomo2
PASS: mast1
PASS: mast2
PASS: mast3
PASS: mast4
PASS: mast5
PASS: mast6
PASS: mast7
PASS: mast8
PASS: mast9
PASS: mast10
PASS: mast11
PASS: mast12
PASS: mast13
PASS: mast14
PASS: mast15
PASS: mast16
PASS: mast17
PASS: mast18
PASS: mcast1
FAIL: meme1 (CRASH!)
FAIL: meme2 (CRASH!)
FAIL: meme3 (CRASH!)
FAIL: meme4 (CRASH!)
FAIL: meme5 (CRASH!)
FAIL: meme6 (CRASH!)
FAIL: meme_psp (CRASH!)
FAIL: meme-chip1 (differences in combined.meme)
FAIL: momo1 (CRASH!)
FAIL: momo2 (CRASH!)
FAIL: momo3 (CRASH!)
FAIL: momo4 (CRASH!)
FAIL: momo5 (CRASH!)
FAIL: momo6 (CRASH!)
FAIL: momo7 (CRASH!)
FAIL: momo8 (CRASH!)
FAIL: momo9 (CRASH!)
FAIL: momo10 (CRASH!)
FAIL: momo11 (CRASH!)
FAIL: momo12 (CRASH!)
FAIL: momo13 (CRASH!)
FAIL: momo14 (CRASH!)
FAIL: momo15 (CRASH!)
FAIL: momo16 (CRASH!)
FAIL: momo17 (CRASH!)
SKIP: motif-in.meme.crp0.text (meme.txt missing)
SKIP: motif-in.meme.crp0.xml (meme.xml missing)
SKIP: motif-in.meme.crp0.html (meme.html missing)
SKIP: motif-in.meme.lipocalin.text (meme.txt missing)
SKIP: motif-in.meme.lipocalin.xml (meme.xml missing)
SKIP: motif-in.meme.lipocalin.html (meme.html missing)
SKIP: motif-in.meme.puf3p.text (meme.txt missing)
SKIP: motif-in.meme.puf3p.xml (meme.xml missing)
SKIP: motif-in.meme.puf3p.html (meme.html missing)
SKIP: motif-in.meme.crp0.extdna.text (meme.txt missing)
SKIP: motif-in.meme.crp0.extdna.xml (meme.xml missing)
SKIP: motif-in.meme.crp0.extdna.html (meme.html missing)
PASS: motif-in.dreme.klf1.text
PASS: motif-in.dreme.klf1.xml
PASS: motif-in.dreme.klf1.html
PASS: motif-in.dreme.klf1.extdna.text
PASS: motif-in.dreme.klf1.extdna.xml
PASS: motif-in.dreme.klf1.extdna.html
PASS: motif-in.dreme.puf3p.text
PASS: motif-in.dreme.puf3p.xml
PASS: motif-in.dreme.puf3p.html
PASS: motiph1
PASS: motiph2
PASS: psp-gen1
PASS: psp-gen2
PASS: psp-gen3
PASS: qvalue1
PASS: qvalue2
PASS: spamo1
PASS: spamo2
PASS: tomtom_allr
PASS: tomtom_ed
PASS: tomtom_kullback
PASS: tomtom_pearson
PASS: tomtom_sandelin
PASS: tomtom_blic1
PASS: tomtom_blic5
PASS: tomtom_allr_cs
PASS: tomtom_ed_cs
PASS: tomtom_kullback_cs
PASS: tomtom_pearson_cs
PASS: tomtom_sandelin_cs
PASS: tomtom_blic1_cs
PASS: tomtom_blic5_cs
============================================================================
Testsuite summary for meme 4.12.0
============================================================================
# TOTAL: 108
# PASS: 71
# SKIP: 12
# XFAIL: 0
# FAIL: 25
# XPASS: 0
# ERROR: 0
============================================================================
See tests/scripts/test-suite.log
============================================================================
make[3]: *** [Makefile:573: test-suite.log] Error 1
make[3]: Leaving directory
'/home/niran/installed_programs/meme_4.12.0/tests/scripts'
make[2]: *** [Makefile:681: check-TESTS] Error 2
make[2]: Leaving directory
'/home/niran/installed_programs/meme_4.12.0/tests/scripts'
make[1]: *** [Makefile:745: check-am] Error 2
make[1]: Leaving directory
'/home/niran/installed_programs/meme_4.12.0/tests/scripts'
make: *** [Makefile:1185: test] Error 2

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