ICS 2000 Manual

ICS-2000 ION CHROMATOGRAPHY SYSTEM
OPERATORS MANUAL
2003 Dionex Corporation
Document No. 031857

Revision 01
March 2003
2003 by Dionex Corporation
All rights reserved worldwide.
Printed in the United States of America.
This publication is protected by federal copyright law. No part of this publication
may be copied or distributed, transmitted, transcribed, stored in a retrieval system, or
transmitted into any human or computer language, in any form or by any means,
electronic, mechanical, magnetic, manual, or otherwise, or disclosed to third parties
without the express written permission of Dionex Corporation, 1228 Titan Way,
Sunnyvale, California 94088-3603 U.S.A.
DISCLAIMER OF WARRANTY AND LIMITED WARRANTY
THIS PUBLICATION IS PROVIDED AS IS WITHOUT WARRANTY OF
ANY KIND. DIONEX CORPORATION DOES NOT WARRANT,
GUARANTEE, OR MAKE ANY EXPRESS OR IMPLIED
REPRESENTATIONS REGARDING THE USE, OR THE RESULTS OF THE
USE, OF THIS PUBLICATION IN TERMS OF CORRECTNESS, ACCURACY,
RELIABILITY, CURRENTNESS, OR OTHERWISE. FURTHER, DIONEX
CORPORATION RESERVES THE RIGHT TO REVISE THIS PUBLICATION
AND TO MAKE CHANGES FROM TIME TO TIME IN THE CONTENT
HEREINOF WITHOUT OBLIGATION OF DIONEX CORPORATION TO
NOTIFY ANY PERSON OR ORGANIZATION OF SUCH REVISION OR
CHANGES.
TRADEMARKS
MMS MicroMembrane Suppressor is a trademark of Dionex Corporation.
AES Atlas Electrolytic Suppressor, Chromeleon, EluGen, OnGuard, and SRS
Self-Regenerating Suppressor are registered trademarks of Dionex Corporation.
Teflon is a registered trademark of E.I. duPont de Nemours & Co.
Windows is a registered trademark of Microsoft Corporation.
PRINTING HISTORY
Revision 01, March 2003
Contents
1 Introduction
1.1 Introduction to Ion Chromatography (IC) . . . . . . . . . . . . . . . . . . . . . . .1-1
1.2 Overview of the ICS-2000 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .1-4
1.3 About This Manual . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .1-5
1.3.1 Safety Messages and Notes . . . . . . . . . . . . . . . . . . . . . . . . . . .1-6
1.3.2 Safety Labels . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .1-8
2 Features
2.1 Operating Features . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .2-1
2.1.1 Front Panel . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .2-1
2.1.2 Top Cover . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .2-6
2.1.3 Component Panel . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .2-7
2.1.4 Rear Panel . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .2-10
2.2 Flow Schematic . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .2-12
2.3 The Chromeleon Interface . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .2-14
2.3.1 The Chromeleon Main Window and Browser . . . . . . . . . . . .2-15
2.3.2 The ICS-2000 Control Panels . . . . . . . . . . . . . . . . . . . . . . . . .2-16
2.4 System Component Details . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .2-22
2.4.1 Vacuum Degas Assembly . . . . . . . . . . . . . . . . . . . . . . . . . . .2-22
2.4.2 Eluent Valve . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .2-24
2.4.3 Pump . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .2-24
Doc. 031857-01 3/03 i

ICS-2000 Ion Chromatography System
2.4.4 Eluent Generator . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 2-27

2.4.5 Injection Valve . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 2-29
2.4.6 Column Heater . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 2-31
2.4.7 Suppressor . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 2-32
2.4.8 DS6 Heated Conductivity Cell . . . . . . . . . . . . . . . . . . . . . . . 2-32
3 Operation and Maintenance

3.1 Operation Overview . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 3-1
3.2 Power Up the System . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 3-3
3.3 Start Chromeleon . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 3-4
3.4 Set Up the Eluent Reservoir . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 3-6
3.4.1 Filter the Deionized Water . . . . . . . . . . . . . . . . . . . . . . . . . . . 3-6
3.4.2 Fill the Reservoir . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 3-7
3.4.3 Set the Eluent Level . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 3-7
3.4.4 Connect the Reservoir . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 3-9
3.5 Check All Connections . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 3-10
3.6 Prime the Pump . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 3-10
3.7 Set System Operating Conditions . . . . . . . . . . . . . . . . . . . . . . . . . . . . 3-11
3.8 Equilibrate the System and Verify Operational Status . . . . . . . . . . . 3-13
3.9 Prepare Samples . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 3-14
3.9.1 Collecting and Storing Samples . . . . . . . . . . . . . . . . . . . . . . 3-14
3.9.2 Pretreating Samples . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 3-14
3.9.3 Diluting Samples . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 3-15
3.10 Loading and Injecting Samples . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 3-16
ii Doc. 031857-01 3/03

Contents
3.10.1 Loading Samples with a Syringe . . . . . . . . . . . . . . . . . . . . . .3-17

3.10.2 Loading Samples with a Vacuum Syringe . . . . . . . . . . . . . . .3-18
3.10.3 Loading Samples with an Autosampler . . . . . . . . . . . . . . . . .3-18
3.10.4 Injecting Samples . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .3-19
3.10.5 Example Chromeleon Commands for Loading and
Injecting Samples . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .3-19
3.11 Process Samples . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .3-20
3.11.1 Manual Sample Processing . . . . . . . . . . . . . . . . . . . . . . . . . .3-20
3.11.2 Automatic (Batch) Sample Processing . . . . . . . . . . . . . . . . . .3-21
3.12 Maintenance . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .3-23
4 Troubleshooting
4.1 Alarms and Error Conditions . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .4-3
4.2 Liquid Leaks . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .4-13
4.3 Pump Difficult to Prime or Loses Prime . . . . . . . . . . . . . . . . . . . . . . .4-15
4.4 Pump Does Not Start . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .4-17
4.5 No Flow . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .4-18
4.6 Erratic Flow/Pressure Reading . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .4-20
4.7 Excessive System Backpressure . . . . . . . . . . . . . . . . . . . . . . . . . . . . .4-20
4.8 Peak Ghosting . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .4-21
4.9 Nonreproducible Peak Height or Retention Time . . . . . . . . . . . . . . . .4-22
4.10 Abnormal Retention Time or Selectivity . . . . . . . . . . . . . . . . . . . . . .4-22
4.11 No Cell Response . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .4-23
4.12 High Cell Output . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .4-23
4.13 Baseline Noise or Drift . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .4-24
Doc. 031857-01 3/03 iii

4.14 Vacuum Degas Assembly Does Not Run . . . . . . . . . . . . . . . . . . . . . . 4-25
5 Service
5.1 Diagnostic and Calibration Procedures . . . . . . . . . . . . . . . . . . . . . . . . 5-1
5.1.1 Chromeleon Wellness Panel Overview . . . . . . . . . . . . . . . . . . 5-2
5.1.2 Diagnostic and Calibration Touch Screen Overview . . . . . . . 5-4
5.1.3 Calibrating the Conductivity Cell . . . . . . . . . . . . . . . . . . . . . . 5-5
5.1.4 Calibrating the Flow Rate . . . . . . . . . . . . . . . . . . . . . . . . . . . . 5-8
5.1.5 Calibrating the Vacuum Degas Assembly . . . . . . . . . . . . . . . 5-10
5.2 Isolating a Restriction in the Liquid Lines . . . . . . . . . . . . . . . . . . . . . 5-11
5.3 Replacing Tubing and Fittings . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 5-14
5.4 Rebuilding the Injection Valve . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 5-15
5.5 Cleaning and Replacing the Pump Check Valves . . . . . . . . . . . . . . . 5-16
5.6 Replacing a Pump Piston Seal and Piston Rinse Seal . . . . . . . . . . . . 5-18
5.7 Replacing a Pump Piston . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 5-22
5.8 Replacing the Waste Valve or Priming Valve O-Ring . . . . . . . . . . . . 5-23
5.9 Replacing the Conductivity Cell . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 5-25
5.10 Replacing the Suppressor . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 5-28
5.11 Replacing the Column Heater . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 5-29
5.12 Replacing the Column Heater Heat Exchanger . . . . . . . . . . . . . . . . . 5-32
5.13 Replacing the Eluent Valve . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 5-33
5.14 Replacing the Leak Sensor . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 5-35
5.15 Priming with Isopropyl Alcohol . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 5-36
5.16 Changing Main Power Fuses . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 5-37
iv Doc. 031857-01 3/03

Contents
5.17 Replacing the Eluent Generator Cartridge . . . . . . . . . . . . . . . . . . . . .5-38

5.18 Replacing the CR-TC . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .5-46
5.19 Replacing the EGC Holder and Degas Assembly . . . . . . . . . . . . . . . .5-49
A Specifications
A.1 Electrical . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . A-1
A.2 Physical . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . A-1
A.3 Environmental . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . A-1
A.4 Front Panel . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . A-2
A.5 Pump . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . A-2
A.6 Detector . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . A-3
A.7 Conductivity Cell with Heat Exchanger . . . . . . . . . . . . . . . . . . . . . . . A-3
A.8 Injection Valve . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . A-3
A.9 Vacuum Degas Assembly . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . A-3
A.10 Column Heater . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . A-4
A.11 Eluent Generator . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . A-4
B Installation
B.1 Facility Requirements . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . B-1
B.2 Unpacking the ICS-2000 System . . . . . . . . . . . . . . . . . . . . . . . . . . . . B-2
B.2.1 Unpacking the Computer (North America only). . . . . . . . . . . B-4
B.2.2 Unpacking the Computer (outside North America) . . . . . . . . B-4
B.3 Installing Chromeleon . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . B-5
B.4 Installing the Chromeleon Software License . . . . . . . . . . . . . . . . . . . B-6
Doc. 031857-01 3/03 v

B.5 Connecting the ICS-2000 to the Chromeleon PC . . . . . . . . . . . . . . . . .B-9

B.5.1 Connecting the ICS-2000 to the PC . . . . . . . . . . . . . . . . . . . . .B-9
B.5.2 Connecting Additional USB Devices. . . . . . . . . . . . . . . . . . .B-10
B.6 Connecting the Power Cord . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .B-11
B.7 Turning On the ICS-2000 Power . . . . . . . . . . . . . . . . . . . . . . . . . . . .B-12
B.8 Setting Up Chromeleon . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .B-13
B.8.1 Assigning the ICS-2000 to a Timebase . . . . . . . . . . . . . . . . .B-13
B.8.2 Assigning DX-LAN Devices to the Timebase (Optional) . . .B-16
B.9 Installing and Plumbing the Columns and Suppressor . . . . . . . . . . . .B-19
B.9.1 Column Heater Setup . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .B-19
B.9.2 Installing the Columns . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .B-20
B.9.3 Installing the Suppressor . . . . . . . . . . . . . . . . . . . . . . . . . . . .B-21
B.10 Connecting the Waste Lines . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .B-23
B.10.1 Installing the Gas Separator Waste Tube . . . . . . . . . . . . . . . .B-23
B.11 Setting Up the Eluent Reservoir . . . . . . . . . . . . . . . . . . . . . . . . . . . . .B-25
B.12 Priming the Pump . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .B-25
B.12.1 Priming the Eluent Lines with a Syringe . . . . . . . . . . . . . . . .B-26
B.12.2 Priming with the Prime Button. . . . . . . . . . . . . . . . . . . . . . . .B-28
B.13 Setting Up the Eluent Generator . . . . . . . . . . . . . . . . . . . . . . . . . . . . .B-29
B.13.1 Installing the CR-TC . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .B-31
B.13.2 Installing the EGC . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .B-33
B.13.3 Conditioning the EGC . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .B-38
B.13.4 Hydrating the CR-TC . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .B-40
B.13.5 Completing the EGC Installation . . . . . . . . . . . . . . . . . . . . . .B-41
B.13.6 EGC Backpressure Requirements . . . . . . . . . . . . . . . . . . . . .B-43
vi Doc. 031857-01 3/03

Contents
B.14 Setting Up a Chromeleon Application . . . . . . . . . . . . . . . . . . . . . . . B-44

B.14.1 Verifying Chromeleon Communication . . . . . . . . . . . . . . . . B-53
B.15 Setting the Eluent Level . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . B-53
B.16 Equilibrating the System . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . B-54
B.17 Verifying Operational Status . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . B-55
B.18 Connecting an AS50 Autosampler (Optional) . . . . . . . . . . . . . . . . . B-56
B.18.1 AS50 Configuration Requirements . . . . . . . . . . . . . . . . . . . . B-56
B.18.2 AS50 Connections. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . B-57
B.18.3 Enable AS50 Control of the Injection Valve. . . . . . . . . . . . . B-59
B.19 Connecting an AS40 Automated Sampler (Optional) . . . . . . . . . . . . B-60
B.20 Analog Output Connection (Optional) . . . . . . . . . . . . . . . . . . . . . . . B-62
B.21 Pressurizing the Eluent Reservoir (Optional) . . . . . . . . . . . . . . . . . . B-62
B.21.1 Connecting the Gas Source (Optional) . . . . . . . . . . . . . . . . . B-63
B.21.2 Pressurizing the Eluent Reservoir (Optional) . . . . . . . . . . . . B-64
B.22 Pump Continuous Seal Wash Connections (Optional) . . . . . . . . . . . B-65
B.23 Manually Connecting to a Control Panel . . . . . . . . . . . . . . . . . . . . . B-67
B.24 Installation Troubleshooting . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . B-69
C Touch Screen Operation

C.1 Using the Touch Screen . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . C-1
C.2 Using the Touch Screen with Chromeleon . . . . . . . . . . . . . . . . . . . . . C-4
C.3 Overview of ICS-2000 Touch Screen Pages . . . . . . . . . . . . . . . . . . . . C-5
C.4 Home Page . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . C-6
C.4.1 Home Page Pump Controls . . . . . . . . . . . . . . . . . . . . . . . . . . . C-6
Doc. 031857-01 3/03 vii

C.4.2 Home Page EGC Controls . . . . . . . . . . . . . . . . . . . . . . . . . . . .C-7

C.4.3 Home Page Column Heater . . . . . . . . . . . . . . . . . . . . . . . . . . .C-9
C.4.4 Home Page Injection Valve Controls . . . . . . . . . . . . . . . . . . . .C-9
C.4.5 Home Page Detector Controls . . . . . . . . . . . . . . . . . . . . . . . . .C-9
C.4.6 Other Home Page Controls. . . . . . . . . . . . . . . . . . . . . . . . . . .C-10
C.5 Plot Page . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .C-11
C.6 Status Page . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .C-12
C.6.1 Viewing Other Status Parameters. . . . . . . . . . . . . . . . . . . . . .C-14
C.6.2 Status Parameter Details. . . . . . . . . . . . . . . . . . . . . . . . . . . . .C-16
C.7 Pump Page . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .C-16
C.7.1 Setting Pump Pressure Limits and Selecting the Pressure
Unit . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .C-17
C.7.2 Setting Degas Operating Parameters . . . . . . . . . . . . . . . . . . .C-18
C.7.3 Controlling the Eluent Valve . . . . . . . . . . . . . . . . . . . . . . . . .C-19
C.8 Eluent Generator Page . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .C-19
C.8.1 EGC Serial Number . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .C-20
C.8.2 Setting the Eluent Concentration . . . . . . . . . . . . . . . . . . . . . .C-21
C.8.3 Controlling the Eluent Generator Power . . . . . . . . . . . . . . . .C-21
C.8.4 Monitoring the EluGen Cartridge Life . . . . . . . . . . . . . . . . . .C-21
C.8.5 Controlling the CR-TC Power . . . . . . . . . . . . . . . . . . . . . . . .C-22
C.9 Suppressor Page . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .C-22
C.10 Detector Page . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .C-24
C.10.1 Setting the Data Rise Time. . . . . . . . . . . . . . . . . . . . . . . . . . .C-24
C.10.2 Selecting the Conductivity Polarity . . . . . . . . . . . . . . . . . . . .C-25
C.10.3 Setting Analog Out Options . . . . . . . . . . . . . . . . . . . . . . . . . .C-25
viii Doc. 031857-01 3/03

Contents
C.11 Information Page . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . C-27

C.12 Module Setup Page . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . C-28
C.13 Input/Output Page . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . C-29
C.14 Diagnostic and Calibration Pages . . . . . . . . . . . . . . . . . . . . . . . . . . . C-30
D TTL and Relay Control

D.1 TTL and Relay Connections . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . D-1
D.1.1 Selecting TTL Input Functions and Control Types. . . . . . . . . D-3
D.2 Controlling TTL and Relay Outputs . . . . . . . . . . . . . . . . . . . . . . . . . . D-5
D.3 Example Setup for Stand-Alone Operation . . . . . . . . . . . . . . . . . . . . . D-7
E Reordering Information
F FAQ
F.1 How do I hook up an autosampler? . . . . . . . . . . . . . . . . . . . . . . . . . . . F-1
F.2 How do I print? . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . F-1
F.3 Why are the retention times moving? . . . . . . . . . . . . . . . . . . . . . . . . . F-1
F.4 How do I adjust retention times? . . . . . . . . . . . . . . . . . . . . . . . . . . . . . F-1
F.5 When should I remake standards? . . . . . . . . . . . . . . . . . . . . . . . . . . . . F-2
F.6 When should I replace the eluent generator cartridge? . . . . . . . . . . . F-2
F.7 How do I start Chromeleon? . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . F-2
F.8 How do I delete data? . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . F-2
F.9 How do I back up data? . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . F-2
F.10 How do I shut off the system? . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . F-2
Doc. 031857-01 3/03 ix

F.11 How do I store columns? . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . F-3

F.12 How do I know when a column is dirty? . . . . . . . . . . . . . . . . . . . . . . . F-3
F.13 How do I clean a column? . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . F-3
F.14 Why is the conductivity high? . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . F-3
G Glossary
x Doc. 031857-01 3/03

1 Introduction
1.1 Introduction to Ion Chromatography (IC)

The Dionex ICS-2000 Ion Chromatography System (ICS-2000) performs ion
analyses using suppressed or non-suppressed conductivity detection. An ion
chromatography system typically consists of a liquid eluent, a high-pressure
pump, a sample injector, a guard and separator column, a chemical suppressor, a
conductivity cell, and a data collection system.
Before running a sample, the ion chromatography system is calibrated using a
standard solution. By comparing the data obtained from a sample to that obtained
from the known standard, sample ions can be identified and quantitated. The data
collection system, typically a computer running chromatography software,
produces a chromatogram (a plot of the detector output vs. time). The
chromatography software converts each peak in the chromatogram to a sample
concentration and produces a printout of the results.
Doc. 031857-01 3/03 1-1

A typical IC analysis consists of 6 stages (see Figure 1-1).
6. Data Analysis
Conductivity
Cell 5. Detection
Suppressor
Eluent
4. Suppression
1. Eluent
Separator
Delivery Column
3. Separation
Pump Guard Column
Injection
Valve
Sample
2. Sample
Injection
Sample Loop
Figure 1-1. Ion Analysis Process
1. Eluent Delivery
Eluent, a liquid that helps to separate the sample ions, carries the
sample through the ion chromatography system. The ICS-2000
includes an eluent generator, which generates eluent online from
deionized water.
When the ICS-2000 is controlled from the front panel, only isocratic
eluent delivery is possible. This means that the eluent composition
and concentration remain constant throughout the run. Gradient
delivery (a change in concentration over time) is possible when the
ICS-2000 is controlled by Chromeleon (the data collection system
for the ICS-2000).
2. Sample Injection
The liquid sample is loaded into a sample loop either manually or
automatically (if an automated sampler is installed). When triggered,
the ICS-2000 injects the sample into the eluent stream.
1-2 Doc. 031857-01 3/03

1 Introduction
The pump pushes the eluent and sample through the guard and
separator columns (chemically-inert tubes packed with a polymeric
resin). The guard column removes contaminants that might poison the
separator column.
3. Separation
As the eluent and sample are pumped through the separator column,
the sample ions are separated. In the ICS-2000, the mode of
separation is called ion exchange. This is based on the premise that
different sample ions migrate through the IC column at different rates,
depending upon their interactions with the ion exchange sites.
4. Suppression
After the eluent and sample ions leave the column, they flow through
a suppressor that selectively enhances detection of the sample ions
while suppressing the conductivity of the eluent.
5. Detection
A conductivity cell measures the electrical conductance of the sample
ions as they emerge from the suppressor and produces a signal based
on a chemical or physical property of the analyte.
6. Data Analysis
The conductivity cell transmits the signal to a data collection system.
The data collection system (for the ICS-2000, this is Chromeleon)
identifies the ions based on retention time, and quantifies each analyte
by integrating the peak area or peak height. The data is quantitated by
comparing the sample peaks in a chromatogram to those produced
from a standard solution. The results are displayed as a chromatogram
and the concentrations of ionic analytes can be automatically
determined and tabulated.
Doc. 031857-01 3/03 1-3

1.2 Overview of the ICS-2000

The ICS-2000 is an integrated ion chromatography system containing an eluent
generator, pump, injection valve, column heater, and conductivity detector. Other
system components, including a guard column, separator column, and suppressor
vary, depending on the analyses to be performed.
The ICS-2000 is also configured with a vacuum degas assembly, for online eluent
degassing.
ICS-2000 operation can be controlled in one of two ways:
Remotely, with a personal computer running Windows 2000 or Windows
XP and Chromeleon software (version 6.5 SP2 or later). Chromeleon also
provides data acquisition and data processing functions.
Locally, with the front panel LCD touch screen. The touch screen is used for
instrument control only. It does not provide data acquisition and data
processing functions. An analog output on the rear panel can be connected to
a separate data acquisition device.
For communication between the ICS-2000 and Chromeleon, the ICS-2000 is
connected to a USB (Universal Serial Bus) port on the computer or a USB hub.
For installation instructions, see Section B.5 and also refer to Installing the
Chromeleon IC System (Document No. 031883).
1-4 Doc. 031857-01 3/03

1 Introduction
1.3 About This Manual
Chapter 1 Introduces ion analysis and the ICS-2000; explains the

Introduction conventions used in this manual, including safety-related
information.
Chapter 2 Provides an overview of ICS-2000 operating features and
Features system components; introduces the Chromeleon user
Overview interface.
Chapter 3 Provides operating instructions and describes routine
Operation and preventive maintenance procedures.
Maintenance
Chapter 4 Lists problems and presents step-by-step procedures for

Troubleshooting how to isolate and eliminate the cause of each problem.
Chapter 5 Provides step-by-step instructions for routine service and
Service parts replacement procedures that the user can perform.
Appendix A Lists the ICS-2000 specifications and installation site
Specifications requirements.
Appendix B Describes how to install the ICS-2000.
Installation
Chapter C Describes the operating features available from the front

Touch Screen panel touch screen.
Operation
Appendix D Describes the ICS-2000 TTL and relay control features.

TTL and Relay
Control
Appendix E Lists spare parts for the ICS-2000.

Reordering
Information
Appendix F Provides answers to frequently asked questions about

FAQ ICS-2000 operation.
Appendix G Defines terms commonly used in ion analysis.
Glossary
Doc. 031857-01 3/03 1-5

1.3.1 Safety Messages and Notes

This manual contains warnings and precautionary statements that can
prevent personal injury and/or damage to the ICS-2000 when properly
followed. Safety messages appear in bold type and are accompanied by
icons, as shown below.
Indicates an imminently hazardous situation which, if not avoided, will

result in death or serious injury.
Indicates a potentially hazardous situation which, if not avoided,

could result in death or serious injury.
Indicates a potentially hazardous situation which, if not avoided, may

result in minor or moderate injury. Also used to identify a situation or
practice that may seriously damage the instrument, but will not cause
injury.
Indicates that the function or process of the instrument may be

impaired. Operation does not constitute a hazard.
Messages d'avertissement en franais
Signale une situation de danger immdiat qui, si elle n'est pas vite,
entranera des blessures graves mortelles.
Signale une situation de danger potentiel qui, si elle n'est pas vite,
pourrait entraner des blessures graves mortelles.
Signale une situation de danger potentiel qui, si elle n'est pas vite,
pourrait entraner des blessures mineures modres. galement
utilis pour signaler une situation ou une pratique qui pourrait
gravement endommager l'instrument mais qui n'entranera pas de
blessures.
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1 Introduction
Warnhinweise in Deutsch
Bedeutet unmittelbare Gefahr. Miachtung kann zum Tod oder

schwerwiegenden Verletzungen fhren.
Bedeutet eine mgliche Gefhrdung. Miachtung kann zum Tod oder

schwerwiegenden Verletzungen fhren.
Bedeutet eine mgliche Gefhrdung. Miachtung kann zu kleineren

oder mittelschweren Verletzungen fhren. Wird auch verwendet, wenn
eine Situation zu schweren Schden am Gert fhren kann, jedoch
keine Verletzungsgefahr besteht.
Notes
Informational messages also appear throughout this manual. These are

labeled NOTE and are in bold type:
NOTE NOTES call attention to certain information. They alert

you to an unexpected result of an action, suggest how to
optimize instrument performance, etc.
Doc. 031857-01 3/03 1-7

1.3.2 Safety Labels

The ICS-2000 meets EN 61010-1:1993 (safety), CAN/CSA-C22.2 No.
1010.1-92 (safety), UL 3101-1/10.93 (safety), EN 50082-1:1992
(susceptibility), EN 55011:1991 (emissions). The TUV GS, C, US Mark
safety labels and the CE Mark label on the ICS-2000 attest to compliance
with these standards.
The symbols below appear on the ICS-2000 or on ICS-2000 labels.
Alternating current
Protective conductor terminal (earth ground)
Power supply is on
Power supply is off
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2 Features
This chapter describes key ICS-2000 features and introduces the Chromeleon user
interface.
2.1 Operating Features
2.1.1 Front Panel

Figure 2-1 illustrates the front panel of the ICS-2000.
Injection Port
The sample to be analyzed can
be injected manually into the
injection port, using a syringe.
For automated sample
injection, the ICS-2000 must be
connected to an autosampler.
For more information about
Touch
sample injection, see
Screen
Section 3.10.
Power
Touch Screen
LED
The LCD touch screen provides
local control of most ICS-2000
functions. You can control
many of these functions
Injection
Port
directly on the touch screens
HOME page (see Figure 2-2).
From the HOME page you can
also go to a series of pages
where you can access all other
locally controlled ICS-2000
operating functions.
Figure 2-1. ICS-2000 Front Panel
Doc. 031857-01 3/03 2-1

Summary of Touch Screen Operation
Status Field
Edit Field
Command
Button
(selected)
Command
Button
(unselected)
Figure 2-2. ICS-2000 Touch Screen Home Page
NOTE To adjust the screen contrast, open the front door and
adjust the knurled knob under the screen (see
Figure 2-8).
Edit fields and command buttons have blue text on a shaded

background. Fields that display status information are not shaded.
Edit fields have square corners and command buttons are rounded.
To select a command button or edit a field, touch and release the
command button or edit field with your fingertip.
NOTE When you touch a button or edit field, the action is

taken when you lift your finger. If you unintentionally
touch a button or field, slide your finger away from the
button or field before lifting, to cancel the action.
Touching a command button (for example, ) executes the

command immediately.
2-2 Doc. 031857-01 3/03

2 Features
When a command button is selected, it changes to white text on a

dark backgound (for example, ).
Touching an edit field (for example, ) opens a page

with a number keypad (see Figure 2-3). Use the keypad to enter the
desired numerical value for the field and then touch the ENTER
button.
Touch CANCEL
to cancel the
entry and return
Touch a
to the previous
number to
page.
enter the
value. Touch ENTER to
confirm the
entry and return
to the previous
page.
Figure 2-3. Number Keypad
Doc. 031857-01 3/03 2-3

Touching the page name (for example, ) in the

bottom right corner, opens a menu of pages (see Figure 2-4).
Touch a page
name to display
the page.
Figure 2-4. ICS-2000 Touch Screen Menu of Pages
Touching a page name on the menu of pages displays the selected

page. For example, touching SUPPRESSOR displays the
SUPPRESSOR page (see Figure 2-5). See Appendix C for details
about each touch screen page.
Touch to
select a
different
option.
Touch to
return to the
Home page.
Figure 2-5. Suppressor Page
2-4 Doc. 031857-01 3/03

2 Features
Touching returns you to the HOME page.

Touching opens a list of options from which to choose (see
Figure 2-6).
Touch an
option to
select it.
Figure 2-6. Suppressor Page: Selecting an Option
Doc. 031857-01 3/03 2-5

2.1.2 Top Cover

Figure 2-7 illustrates the top cover of the ICS-2000.
EluGen Reservoir Storage

Cartridge
and Holder The ICS-2000 top cover
holds the EluGen
cartridge holder (see
below) and up to two 2-L
plastic reservoirs
(P/N 044129).
EGC and
EluGen Cartridge (EGC)
CR-TC
Connectors The EluGen cartridge is
installed in a holder,
Tubing Chase
(under
Deionized which fits into the back
Water reservoir position. See
connectors)
Section 2.4.4 for details
about the eluent generator.
EGC Service 4 L Reservoir
Area Area
Figure 2-7. ICS-2000 (Top View)
EGC and CR-TC Connectors

The cable from the EluGen cartridge connects to the EGC-1 connector.
The cable from the Continuously Regenerated Trap Column connects to
the CR-TC connector. See Section B.13 for installation instructions.
NOTE The EGC-2 connector is reserved for future use.
Tubing Chase
The tubing chase under the EGC and CR-TC connectors routes tubing
from the eluent reservoir and EGC holder to the front of the ICS-2000.
EGC Service
The EGC service area holds the cartridge during installation and
replacement. See Section B.13 for instructions.
2-6 Doc. 031857-01 3/03

2 Features
2.1.3 Component Panel

Figure 2-8 shows the user-accessible components installed on the
component panel behind the ICS-2000 front door.
11
10
1 Eluent Valve
9
2 Leak Sensor
6 3 Pump Heads
7
4 Pressure Transducer
8
5 Injection Valve
6 Column Heater
and Columns
7 Suppressor
8 DS6 Cell
5
4
9 Mounting brackets for
a second suppressor
10 Screen Adjustment
Knob (under display)
3
11 Tubing Chase (2)
2
11
1
Figure 2-8. ICS-2000 Component Panel
Doc. 031857-01 3/03 2-7

Eluent Valve
The eluent valve controls the flow from the eluent reservoir. It opens
automatically when the pump is running and closes when the pump is off.
Leak Sensor
The leak sensor is installed in the drip tray at the bottom of the component
panel. If liquid accumulates in the tray, an error message is reported in
Chromeleon on the LCD touch screen.
Pump Heads
The ICS-2000 includes a serial isocratic dual-head pump. The flow rate
can be set to 0.00 and to between 0.05 and 5.0 mL/min. However, for
optimum performance, set the flow rate to between 0.4 and 2.0 mL/min.
Setting the flow rate to 0.00 turns off the pump. See Section 2.4.3 for
details about the pump.
Pressure Transducer
The pressure transducer measures the system backpressure.
Injection Valve
The injection valve is a six-port, electrically-activated valve. A 25-L

sample loop (P/N 042857) is installed on the valve at the factory. See
Section 2.4.5 for details about valve operation.
Separator and Guard Columns
Both the separator and guard columns are packed with resin and perform
the separation of the sample ions. The main function of the guard column
is to trap contaminants and remove particulates that might damage the
separator column.
Column Heater
The column heater controls the temperature of the separator and guard
columns. The temperature can be set to between 30 C and 60 C and it
must be set at least 5 C above the ambient temperature. See Section 2.4.6
for details about the column heater.
2-8 Doc. 031857-01 3/03

2 Features
Suppressor
The suppressor reduces the eluent conductivity and enhances the
conductivity of the sample ions, thereby increasing detection sensitivity.
Either an AES Atlas Electrolytic Suppressor, SRS Self-Regenerating
Suppressor, or MMS MicroMembrane Suppressor can be used with
the ICS-2000. See Section 2.4.7 for details.
DS6 Heated Conductivity Cell

The flow-through conductivity cell measures the electrical conductance
of analyte ions as they pass through the cell. A heat exchanger inside the
cell regulates the temperature, which can be set to between 30 C and
55 C. For optimum performance, set the temperature to at least 7 C
above the ambient temperature. See Section 2.4.8 for details about the
cell.
Screen Adjustment Knob

Use this knob to change the LCD touch screen contrast.
Tubing Chases
The upper tubing chase routes tubing from the top cover to the component
panel. The lower tubing chase routes tubing from the component panel
through the ICS-2000 interior to the rear panel.
Doc. 031857-01 3/03 2-9

2.1.4 Rear Panel

Figure 2-9 illustrates the ICS-2000 rear panel.
Tubing Clips
Analog Output
Connector
Power
Switch
USB
Connections
TTL and Relay

Main Power Connector Strip
Receptacle
Waste Lines
Figure 2-9. ICS-2000 Rear Panel
Analog Output Connector

The analog output connector outputs conductivity data (scaled to 1 volt)
to an integrator or recording device. See Section B.20 for connection and
setup information.
USB Connections
A USB receptacle is provided to allow connection to the Chromeleon
computer. Two USB ports are provided for connecting to other USB
devices. See Section B.5 for connection instructions.
2-10 Doc. 031857-01 3/03

2 Features
TTL and Relay Connector

The TTL and Relay connector strip provides two TTL outputs, two relay
outputs, and four TTL inputs. The outputs can be used to control
functions in other TTL or relay controllable devices. The inputs can be
used to switch the injection valve position, turn on the pump, perform an
autozero command, and send an event mark to the analog output. See
Section D.1 for connection instructions.
Tubing Clips
The tubing clips hold tubing in place when routing it from the top cover.
Power Switch
The power switch provides on/off control of power to the ICS-2000.
Main Power Receptacle

The power supply cord plugs into the AC power receptacle.
The power supply cord is used as the main disconnect device. Make
sure the socket-outlet is located near the ICS-2000 and is easily
accessible.
Le cordon d'alimentation principal est utilis comme dispositif

principal de dbranchement. Veillez ce que la prise de base soit
situe/installe prs du module et facilement accessible.
Das Netzkabel ist das wichtigste Mittel zur Stromunterbrechung.
Stellen Sie sicher, da sich die Steckdose nahe am Gert befindet und
leicht zugnglich ist.
Doc. 031857-01 3/03 2-11

2.2 Flow Schematic

Figure 2-10 illustrates the liquid flow path through an ICS-2000 when using
suppression in autorecycle mode.
1 EGC
DEIONIZED 6 OUT
WATER
OUT
IN OUT
OUT
PUMP 17
DEGAS EGC
8 DEGAS
SUPPRESSOR
IN OUT
HEAT EXCHANGER
13
CR-TC 14 IN
7 COND OUT
SEPARATOR COLUMN
16 CELL
15
COLUMN HEATER
PULSE IN
DAMPER
5 11
SAMPLE
IN
S L OUT
10 W 9 C
4 12
GUARD
L P PRESS.
XDUCER.
VALVE
IN
WASTE
WASTE
18
OUT OUT
3
PUMP PUMP
HEAD HEAD
IN IN
WASTE
IN
2 OUT
ELUENT
VALVE
Figure 2-10. ICS-2000 Flow Schematic
2-12 Doc. 031857-01 3/03

2 Features
Deionized water from the reservoirn flows first through the pump degas
assembly and then through the eluent valveo to the pumpp. It is then pushed
through the pressure transducerq , which measures the system pressure. From
there, the water flows through a pulse damperr, which smooths minor
pressure variations from the pump to minimize baseline noise.
Water then flows into the EluGen cartridge (EGC)s , which generates the
programmed concentration of eluent. Eluent exits the cartridge and flows
through the CR-TCt (which traps ionic contaminants), through the EGC
degas tubing assemblyu, and on to the injection valvev.
After sample is loaded into the sample loopw and the injection valve is
toggled to the Inject position, eluent passes through the sample loop.
The eluent/sample mixture is pumped through the heat exchanger 11 , which
heats the mixture to the column heater temperature. The mixture then goes to
the guard and separator columns 12 and through the suppressor 13 .
From the suppressor, the mixture flows through the cell 14 , where the analytes
are detected. A digital signal is sent to Chromeleon software. Analog output
can be collected simultaneously.
The mixture flows out of the cell and is recycled back into the suppressor 15 ,
where it is the water source for the regenerant chamber.
Regenerant waste from the suppressor is directed back to the CR-TC 16 , and
then to the EGC degas tubing 17 , where any released hydrogen or oxygen gas
is removed before it is sent to waste 18 .
Doc. 031857-01 3/03 2-13

2.3 The Chromeleon Interface

NOTE This section provides a brief overview of the
Chromeleon interface. For details, refer to the
Chromeleon Help or users manual.
Chromeleon software is used for remote control of ICS-2000 operation. Two

modes of software control are available: direct control and automated control.
With direct control, you select operating parameters and commands from the
Chromeleon menu bar, toolbars, and Control Panels. Direct control
commands are executed as soon as they are entered. Section 2.3.2 describes
the commands available from the ICS-2000 Control Panels.
With automated control, you create a list of samples (a sequence) to be
processed automatically. The sequence includes programs with commands
and parameters for controlling the ICS-2000, acquiring sample data, and
producing reports. Section 3.11.2 describes automatic sample processing.
2-14 Doc. 031857-01 3/03

2 Features
2.3.1 The Chromeleon Main Window and Browser

When you start Chromeleon, the main window and the Chromeleon
Browser appear (see Figure 2-11).
Figure 2-11. Chromeleon Main Window and Browser
NOTE The Chromeleon Browser looks and functions like

Windows Explorer, but do not confuse the two. If you
copy files from the Chromeleon Browser into Explorer,
the files will be corrupted.
The Browser displays the directories in which chromatographic data is

located, and allows you to open, move, and delete data.
The left pane of the Browser shows the directory tree structure. By
clicking the + signs next to the folders and expanding the directory
tree, you can access sequences, System Control Panels, Wellness
Panels, and reports.
The right pane displays information about the item selected in the left
pane.
Doc. 031857-01 3/03 2-15

2.3.2 The ICS-2000 Control Panels

Chromeleon provides two types of Control Panels for the ICS-2000.
System Control Panels are used for controlling and monitoring ICS-
2000 operation. System Control Panels are described below.
The Wellness Panel is used for performing calibration and diagnostic
functions. The Wellness Panel is described in Section 5.1.
System Control Panels
System Control Panels for the ICS-2000 are located in the Dionex
Templates/Panels/Dionex_IC\ICS-2000 folder. Chromeleon provides
panels for each ICS-2000 system configuration. There are two styles of
panels:
Traditional system panels (see Figure 2-12) provide controls on a
single window with minimal graphics.
System panels (see Figure 2-13) provide a more graphical interface
than the traditional style. On these panels, clicking a control often
brings up another window in which you enter a value.
When you open a System Control Panel, select a panel that matches your
system configuration and choose the style that you prefer.
2-16 Doc. 031857-01 3/03

2 Features
Figure 2-12. ICS-2000 System Control Panel (Traditional)
Figure 2-13. ICS-2000 System Control Panel (Graphical)
Doc. 031857-01 3/03 2-17

System Controls Overview
This section provides brief descriptions of the various controls available

on the ICS-2000 System Control Panels.
NOTE The examples are from the traditional style of panel.

Sample
Datasource
Displays the database in which the chromatographic data for the sample
is saved.
Sequence
Displays the sequence in which this sample is included.
Sample
Displays the name of the sample that is running.
Program
Displays the name of the program that is running.
Elapsed Time
Displays the time that has elapsed since the sample analysis began.
Run Time
Displays the total run time.
System
System Startup
Starts the pump, suppressor, and eluent generator. The flow rate,
suppressor current, and eluent concentration settings that were in effect
at system shutdown (see below) are restored.
System Shutdown
Stops the pump, suppressor, and eluent generator. The flow rate,
suppressor current, and eluent concentration settings currently in effect
are remembered and will be restored at system startup (see above).
2-18 Doc. 031857-01 3/03

2 Features
Audit Trail
The Audit Trail displays an account of every event that occurs during
ICS-2000 operation. This includes errors, status messages, operational
events, etc.
Pump
Eluent Bottle
The entry field and gauge indicate the level
of liquid (in liters) in the eluent bottle. This
is a user controlled feature. The level must
be entered by the user when the reservoir is
filled. See Section 3.4.2 for details.
Connected
Connects the ICS-2000 to the Chromeleon
Control Panel, enabling communication
between the PC and the module. Clearing
the check box disconnects the ICS-2000
from the PC.
Hold Mode
Indicates when an automatic (batch) run is on hold; pump flow is not
stopped.
Stop Mode
Indicates when an automatic (batch) run is stopped; pump flow is also
stopped.
Flow Rate
Sets the pump flow rate in mL/min.
Pressure
The sliders select the upper and lower pressure limits. The Pressure field
displays the current pressure.
On, Off, Prime
Turn the pump on and off or start the pump priming function.
Doc. 031857-01 3/03 2-19

Inject Valve
Displays the current position of the inject
valve. The Inject and Load buttons select the
position.
Eluent Flow Valve
Displays the current position of the eluent
flow valve. The Closed and Open buttons
select the position.
Column Heater
Set Temp
Sets the temperature of the column heater.
Detector
Connected
Connects the ICS-2000 to the Chromeleon Control Panel, enabling
communication between the PC and the module. Clearing the Connected
check box disconnects the ICS-2000 from the PC.
Autozero
Sets the conductivity to zero.
Ready
Indicates if the detector is ready to begin data acquisition.
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2 Features
Signal
Displays the offset conductivity.
Data Rate
Sets the rate at which data points are recorded.
Supp. Type
Selects the type of suppressor installed.
SRS Current
Sets the current supplied to the suppressor.
Cell Temp
Sets the temperature of the cell.
SRS Mode
Selects whether the suppressor is on or off.
Show Plot
Displays the ICS-2000 detector signal plot in a separate window.
ICS-2000 Eluent Generator

Concentration
Sets the concentration of
eluent generated.
On/Off
Turns the eluent generator
on or off.
Cartridge No.
Displays the serial number
of the installed cartridge.
Exp. Date
Displays the expiration date of the installed cartridge.
Cartridge Type
Displays the type of cartridge installed.
Remaining Lifetime
Displays the percentage of ions remaining in the cartridge.
CR-TC
Turns the CR-TC on or off.
Doc. 031857-01 3/03 2-21

2.4 System Component Details

This section provides details about ICS-2000 system components, including the
vacuum degas assembly, pump, eluent generator, injection valve, column heater,
suppressor, and conductivity cell.
2.4.1 Vacuum Degas Assembly

The vacuum degas assembly provides online eluent degassing at the time
and duration specified by the user. The assembly, which must be installed
in the ICS-2000 at the factory, consists of:
A single-channel degas chamber (with degas membranes) with
internal capacity of 17 mL
A dual-stage diaphragm vacuum pump
A solenoid valve
An on-board vacuum sensor
The electronics required to operate the vacuum pump
Tubing, fittings, and other accessories
By default, the ICS-2000 monitors the degas pressure reading and turns
the degas pump on and off as needed. A different degas operating mode
can be selected from the touch screen PUMP page (see Section C.7) or
from Chromeleon. To select degas operating options from Chromeleon,
open the Server Configuration program, select the ICS-2000 device icon
2-22 Doc. 031857-01 3/03

2 Features
under the timebase, and select Properties from the Edit menu. Select the
Options tab (see Figure 2-14).
Figure 2-14. Server Configuration Properties: Degas Mode Options
Degas Mode Options
Always Off: The degas pump is always off.

Always On: The degas pump is always on. This setting is for test
purposes by a Dionex Service Representative. Do not use this setting
for routine operation.
Cycle: The degas pump cycles on and off according to the times
specified in the Cycle On and Off fields. Cycle On specifies for how
long the degas pump runs during a cycle. Cycle Off specifies the time
between cycles.
Monitor: (default mode) The ICS-2000 monitors the degas pressure
reading and turns the degas pump on and off as required.
Doc. 031857-01 3/03 2-23

2.4.2 Eluent Valve

The eluent valve controls the flow
from the eluent reservoir. It opens
automatically when the pump is
running and closes when the
pump is off. The valve can also be
opened and closed manually from
the Chromeleon Control Panel
(see Section 2.3.2), or from the
ICS-2000 touch screen PUMP
page (see Section C.7). This lets
you perform service procedures
on pump components without
eluent leaks occurring.
Figure 2-15. Eluent Valve
2.4.3 Pump
The ICS-2000 pump is a microprocessor-based isocratic eluent delivery
system. Its variable speed, dual-piston series design ensures pulse-free
pumping for the most demanding applications.
Primary Pump Head
The primary pump head pumps mobile phase into the secondary head (see
Figure 2-16). The check valves, which prevent reverse flow through the
pump, are located on the bottom (inlet) and top (outlet) of the primary
pump head. The priming valve is on the front of the pump head.
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2 Features
Outlet Check
Pressure Valve
Transducer
Primary
Pump Head
Secondary
Pump Head Priming
Valve
Inlet Check
Waste Valve Valve
Figure 2-16. ICS-2000 Pump Components
To open the priming valve, turn the knob one-quarter to one-half turn
counterclockwise. When the priming valve is open, liquid can flow into
and out of the primary pump head via the port in the front of the valve.
NOTE The priming valve must be open when the pump is

being primed with a syringe or with isopropyl
alcohol. For detailed priming instructions, see
Section B.14.
Secondary Pump Head
The secondary pump head delivers eluent to the remainder of the

chromatography system (injection valve, column, and detector). The
waste valve is located on the front of the secondary pump head (see
Figure 2-16).
To open the waste valve, turn the knob one-quarter to one-half turn
counterclockwise. When the waste valve is in the open position, all output
is directed to waste.
NOTE The waste valve must be open when the pump is

being primed using the Prime button. For detailed
priming instructions, see Section B.14.
Doc. 031857-01 3/03 2-25

Pressure Transducer
Flow exiting the secondary pump head is directed to the pressure

transducer (see Figure 2-16), which measures the system pressure.
Pressure readings, which can be monitored from the Chromeleon Control
Panel or the touch screen HOME page, indicate that the pumping system is
delivering smooth, accurate flow.
The system pressure should remain consistent (no more than a 3%
difference from one pressure reading to the next). High and low pressure
limits can be used to stop the pump flow if a limit is exceeded. See
Section 4.1 for troubleshooting information if a pressure limit is
exceeded.
Pulse Damper
Flow output from the pressure transducer continues to the pulse damper,
which smooths minor pressure variations. From there, flow is directed to
the injection valve and then to the remainder of the chromatography
system.
Piston Seal Wash
The pump includes a piston seal wash assembly that can be set up to
continuously rinse the back of the piston seals to remove salt crystals and
prolong the life of the seals. To use this feature, an external water source
must be connected. See Section B.22 for connection instructions.
For continued protection of the pump, replace the piston rinse seals (see
Section 5.6) and O-rings in the seal wash assembly every 6 months, or
whenever you replace the main piston seals for the ICS-2000 pump.
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2 Features
2.4.4 Eluent Generator

The eluent generator produces high-purity eluents online, using only
deionized water as the carrier. The eluent generator consists of an eluent
generator cartridge (EGC) that generates the eluent, and a high-pressure
degas tubing assembly that removes electrolysis gases created during
eluent generation. The following EluGen cartridge versions are available:
The EGC-KOH EluGen Cartridge generates potassium hydroxide
(KOH) for anion separations.
The EGC-MSA EluGen Cartridge generates methanesulfonic acid
(MSA) for cation separations.
You can select the concentration of eluent to be generated from either the
Chromeleon Control Panel or from the touch screen HOME page (see
Section C.4).
DO NOT CAP THE WASTE CONTAINER: The ICS-2000 uses an
electrolytic process that results in the production of small amounts of
oxygen and hydrogen gas. To ensure that the gas is not trapped in a
closed container and allowed to concentrate, install a 1.3-cm (0.52-in)
ID black gas separator waste tube (P/N 045460) in an uncapped waste
container. Connect the Waste, Gas Separator line to the waste tube
See Section B.10.1 for installation instructions.
NE FERMEZ PAS LE CONTENEUR DE GAZ RSIDUEL L : Le ICS-2000

travaille avec un proces dlectrolyse, qui produit des petites
quantits de gaz doxygne et dhydrogne. Afin de garantir que le
gaz ne soit pas enferm dans un conteneur ferm et puisse sy
concentrer, connectez un tube noir gaz rsiduel (diamtre intrieur =
1,3 cm ; n de commande 045460) un conteneur ouvert (non ferm).
Connectez le conteneur rsiduel au tube rsiduel/gaz sparateur
(dsign: Waste, Gas Separator).
VERSCHLIESSEN SIE DEN ABFALLBEHLTER NICHT: Der ICS-2000

verwendet einen Elektrolyseprozess, wodurch kleine Mengen an
Sauerstoff und Wasserstoff entstehen. Fhren Sie einen schwarzen
Gasabscheiderschlauch (ID = 1,3 cm; Bestell-Nr. 045460) in einen
offenen (unverschlossenen) Abfallbehlter, damit sich das Gas nicht
in einem geschlossenen Behlter sammelt und aufkonzentriert.
Verbinden Sie die mit Waste, Gas Separator bezeichnete Leitung mit
dem Abfallschlauch.
Doc. 031857-01 3/03 2-27

Eluent Generator Cartridge and Holder
The EGC is installed in a cartridge holder, which mounts on the ICS-2000

top cover (see Figure 2-7).
The cartridge holder also houses the high-pressure degas tubing assembly
and the CR-TC.
Tubing and fittings for plumbing the cartridge, degas assembly, and CR-
TC are included with the holder. See Section B.13 for installation
instructions.
Continuously Regenerating Trap Column (CR-TC)
The CR-TC Continuously Regenerated Trap Column is a high-pressure

electrically regenerated device that continuously removes anionic or
cationic contaminants from the eluent. The CR-TC does not require
chemical regeneration.
The CR-TC is plumbed after the eluent generator cartridge (see
Figure 2-10). The CR-ATC (P/N 060080) is used with the EGC-KOH for
anion applications. The CR-CTC (P/N 060411) is used with the EGC-
MSA for cation applications.
While the CR-TC is recommended for use with the eluent generator, it is
possible to use other trap columns, including the ATC-HC and the CTC
trap columns. Refer to the EG50 product manual (Document No. 031908)
for details. The manuals is on the Dionex Reference Library CD-ROM
(P/N 053891), located in the ICS-2000 Ship Kit (P/N 057905).
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2 Features
2.4.5 Injection Valve

The injection valve (P/N 057968) is a six-port, electrically-activated
valve. A 25-L sample loop (P/N 042857) is installed on the valve at the
factory.
The valve has two operating positions: Load and Inject (see Figure 2-17).
LOAD POSITION INJECT POSITION

Sample In Sample In
To Column To Column
Sample Sample
Loop Loop
To Waste From Pump To Waste From Pump
Figure 2-17. Injection Valve Flow Schematics
Eluent flows through either the Load or Inject path, depending on the
valve position.
In the Load position, sample is loaded into the sample loop, where it
is held until injection. Eluent flows from the pump, through the valve,
and to the column, bypassing the sample loop. Sample flows from the
syringe or automated sampler line (if installed), through the valve,
and into the sample loop. Excess sample flows out to waste.
In the Inject position, sample is swept to the column for analysis.
Eluent flows from the pump, through the sample loop, and on to the
column, carrying the contents of the sample loop with it. Section 3.10
describes how to inject samples.
Figure 2-18 shows the injection valve connections. The injection valve is
plumbed at the factory with all tubing and fittings for connection to the
pump, injection port, column, and waste. A 25-L PEEK sample loop
(P/N 042857) is installed between ports L (1) and L (4). Dionex offers
Doc. 031857-01 3/03 2-29

sample loops in various sizes. If necessary, the pre-installed 25-L loop

can be replaced with a loop that has a different sample injection volume.
Figure 2-18. Injection Valve Plumbing
NOTE To provide an optimum system backpressure for the

eluent generator of 16 MPa (2300 psi), a pressure
restrictor coil may be installed between Port P and the
TO INJECT VALVE - P line.
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2 Features
2.4.6 Column Heater

The column heater provides temperature
control for the separator and guard column.
The heater temperature can be set to between

30 C and 60 C and it must be set at least
5 C above the ambient temperature.
Temperature is monitored via a thermistor
mounted in the heater block. Setting the
temperature to 0 C turns off the column
heater.
If the temperature exceeds 65 C, the column
heater is shut off and the error message
Column heater exceeds safe temperature.
is displayed on the screen and in
Chromeleon. See Section 4.1 for
troubleshooting information.
Figure 2-19. Column Heater
Doc. 031857-01 3/03 2-31

2.4.7 Suppressor
The suppressor reduces the eluent conductivity and enhances the
conductivity of the sample ions, thereby increasing detection sensitivity.
Either an Atlas Electrolytic Suppressor, Self-Regenerating Suppressor, or
MicroMembrane Suppressor can be used with the ICS-2000.
For details about any of the suppressors or for information about selecting
a suppressor for your application, refer to the suppressor manuals. The
manuals are on the Dionex Reference Library CD-ROM (P/N 053891),
located in the ICS-2000 Ship Kit (P/N 057905).
2.4.8 DS6 Heated Conductivity Cell

The ICS-2000 flow-through conductivity cell measures the electrical
conductance of analyte ions as they pass through the cell. Two passivated
316 stainless steel electrodes are permanently sealed into the PEEK cell
body. The cell design provides efficient sweep-out, low volume (1 L),
and low dispersion. Temperature control and compensation help ensure
good peak reproducibility and baseline stability.
Temperature Control
Temperature directly affects the conductivity of a solution. For example,

laboratory heating and air conditioning systems can cause a regular slow
cycling in the baseline. This, in turn, can affect the reproducibility of an
analysis. The higher the conductivity, the more pronounced the effect.
In ion analysis, the effect of temperature variation is minimized by
suppressing eluent conductivity. To further reduce the effect of
temperature variation, the ICS-2000 provides temperature control to the
cell. A heater inside the cell regulates the temperature. The cell heater can
be set to between 30 C and 55 C. The set temperature must be at least
7 C above the ambient temperature. Setting the cell temperature to 0 C
turns off the cell heater.
Temperature Compensation
Built-in preset temperature compensation of 1.7% per C helps minimize

changes in the baseline or in peak heights if the operating temperature is
different from the temperature at which the cell was calibrated.
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2 Features
DS6 Heated Conductivity Cell Components
The cell front cover provides CELL IN and CELL OUT fittings for
connecting the cell to the suppressor (see Figure 2-8). The remaining cell
components are mounted behind the component panel. To replace, the cell
remove the screws on the cell front cover and pull the entire cell assembly
out through the component panel. See Section 5.9 for cell replacement
instructions.
Doc. 031857-01 3/03 2-33

2-34 Doc. 031857-01 3/03

This chapter describes routine operating and maintenance procedures for the ICS-
2000 Ion Chromatography System.
3.1 Operation Overview

Figure 3-1 illustrates the basic steps for routine operation of the ICS-2000.
Pow er up the system
Start Chromeleon
Set up the reservoir
Check all
connections
Prime the pump
Set operating
conditions
Equilibrate the
system
Prepare samples
Verify operating
status
Process samples
Figure 3-1. ICS-2000 Operation Flow Chart
Doc. 031857-01 3/03 3-1

Sample Processing Overview

Samples can be run either manually (one at a time), or they can be grouped and
run automatically in batches. Figure 3-2 shows the typical steps for manual and
batch sample processing. Samples can be loaded into the sample loop with an
autosampler or with a syringe through the injection port on the ICS-2000 front
door.
Manual Sample Manual Sample Batch Sample

Processing Processing Processing
Using the Front Panel Using Chromeleon Using Chromeleon
Load the sample Load the sample Create a sequence

(Sequence Wizard)
Autozero Start data

acquisition Add the sequence
to the batch
Inject the sample Autozero

Start the batch
(Optional) Inject the sample

Record data from
the analog output*
Stop data
*A third-party recording acquisition
device must be connected
to the analog output.
(Optional)
Save the manual
sequence data
Figure 3-2. Sample Processing Overview
3-2 Doc. 031857-01 3/03

3.2 Power Up the System
Press the power switch on the ICS-

2000 rear panel (see Figure 3-3) to
turn on the system power. Table 3-1
Power shows the ICS-2000 conditions at
Switch power up.
Also turn on the power to the

computer and the autosampler (if
used).
Figure 3-3. ICS-2000 Rear Panel
Feature Power-Up Condition

Pump Off
Injection valve Load position
Cell Reading current value
Suppressor Off*
Cell heater Set to the last value used. The default when the
ICS-2000 is turned on for the first time is 35 C.
Column oven temperature Set to the last value used. The default when the
ICS-2000 is turned on for the first time is 30 C.
Eluent generator Off
CR-TC Off*
Table 3-1. ICS-2000 Power-Up Conditions
* When you start the suppressor and/or the eluent generator, the value used last is
restored.
Doc. 031857-01 3/03 3-3

3.3 Start Chromeleon

NOTE See Section B.8 for how to set up Chromeleon, if you are
beginning operation of an ICS-2000 that has not been
configured in a timebase.
1. If the Chromeleon Server is not running (the icon on the taskbar is crossed out
in red ), start the Server by right-clicking the icon and selecting Start
Server. When the server starts, the icon changes to gray .
2. Start Chromeleon by selecting Start>Programs>Chromeleon>

Chromeleon. The Chromeleon main window and the Browser will open.
Your screen display should resemble Figure 3-4. If the Browser does not
open, select Browser from the File menu to open it.
Figure 3-4. Chromeleon Main Window and Browser
3-4 Doc. 031857-01 3/03

3. In the Browser, expand the Dionex Templates\Panels\Dionex_IC\ICS-2000

System Panels folder. Several ICS-2000 System Control Panels (.PAN files)
are provided, corresponding to various system configurations. There are two
styles of panels:
Traditional panels provide controls on a single window with minimal
graphics.
System panels provide a more graphical interface than the traditional style
and include more controls. You can choose either style of panel,
depending on your personal preference.
4. Open a panel for your system configuration by double-clicking its name in the
list. For example, if your system includes an ICS-2000 and an AS50
autosampler, double-click either ICS-2000_Traditional_System_AS50.pan
or ICS-2000_System_AS50.pan.
5. The Control Panel opens, unconnected (see Figure 3-5). To connect to the
timebase, open the Control menu and click the name of the ICS-2000
timebase from the list at the bottom of the menu.
Figure 3-5. ICS-2000 System Control Panel (Unconnected)
Doc. 031857-01 3/03 3-5

Figure 3-6 shows a connected Control Panel for an ICS-2000 system.
Figure 3-6. ICS-2000 System Control Panel (Connected)
NOTE The ICS-2000 Ion Chromatography System is designed

for use for IC (ion chromatography) and BioLC
applications and should not be used for any other
purpose. If there is a question regarding appropriate
usage, contact Dionex.
3.4 Set Up the Eluent Reservoir
3.4.1 Filter the Deionized Water

Filtering removes small particulates in the deionized water that may
contaminate the pump check valves and cause erratic flow rates or loss of
prime. An end-line filter (P/N 045987) is provided in the ICS-2000 Ship
Kit (P/N 057905) for this purpose.
3-6 Doc. 031857-01 3/03

Install the end-line filter on the end of the deionized water line, inside the
reservoir. Verify that the end of the filter extends to the bottom of the
reservoir and that the filter is submerged in deionized water. This prevents
air from being drawn through the lines. Refer to the Pressurizable
Reservoir Installation Instructions for details.
3.4.2 Fill the Reservoir

Fill the reservoir with deionized water.
3.4.3 Set the Eluent Level

After filling the reservoir, open the HOME page and enter the volume of
liquid in the reservoir in the Eluent Level field (see Figure 3-7), or enter
the volume in the Eluent Bottle field on the Chromeleon Control Panel
(see Figure 3-8). The ICS-2000 determines the eluent usage, by
monitoring the flow rate and the length of time the pump is on, and
updates the field as the eluent is used up. A warning is displayed if the
level falls below 200 mL. It is repeated at 100 mL and then at 0 mL.
In order for the eluent level displayed on the screen to be accurate,
the level must be entered by the user when the reservoir is filled. The
ICS-2000 does not automatically detect when the reservoir is filled,
nor when it is empty.
Enter the volume of Note: The Eluent Level

liquid in the reservoir field is updated as the
liquid is used up.
Figure 3-7. Home Page: Setting the Eluent Level
Enter the volume of Note: The Eluent Bottle

liquid in the reservoir field and slider gauge
are updated as the
liquid is used up.
Figure 3-8. Chromeleon Control Panel: Setting the Eluent Level
Doc. 031857-01 3/03 3-7

The amount of liquid remaining in the reservoir is also displayed on the

STATUS page (see Figure 3-9). The STATUS page also displays an estimate
of how many hours remain before the eluent reservoir is empty. See
Section C.6 for details about the STATUS PAGE.
Figure 3-9. Status Page
3-8 Doc. 031857-01 3/03

3.4.4 Connect the Reservoir

If it is not already connected,
connect the ELUENT BOTTLE
OUT line from the reservoir
cap to the ELUENT IN line, ELUENT
BOTTLE
which extends from the OUT
plumbing and cable chase on
the top of the ICS-2000 (see
Figure 3-10).
ELUENT
IN
Figure 3-10. Reservoir Connections
Doc. 031857-01 3/03 3-9

3.5 Check All Connections

1. Make sure the reservoir is filled and the tubing connecting the reservoir to the
ICS-2000 tubing is securely connected (see Figure 3-10).
2. Make sure the eluent generator electrical cable (blue) is connected to the
EGC-1 connector.
3. Make sure the CR-TC electrical cable (black) is connected to the CR-TC
connector.
4. Make sure the USB cable from the computer is connected to the USB
receptacle on the ICS-2000 rear panel.
3.6 Prime the Pump

If you changed eluent or if the eluent lines are dry, prime the lines first
with a syringe before priming the pump. See Section B.12.1 for
instructions.
1. Verify that the priming valve on the primary pump head (see Figure 3-11) is
closed (turned all the way clockwise).
2. Open the waste valve on the secondary pump head by turning the knob one-
quarter to one-half turn counterclockwise. Opening the valve directs the
eluent flow path to waste and eliminates backpressure.
Secondary
Pump Head
Waste Valve
(open)
Primary
Pump Head
Priming Valve
(close)
Figure 3-11. Priming the Pump
3-10 Doc. 031857-01 3/03

3. Press Prime on the Chromeleon Control Panel or the ICS-2000 touch screen
HOME page. A confirmation message is displayed, asking if you opened the
waste valve. Select Yes. The pump will begin pumping at approximately
3.0 mL/min.
4. Continue priming the ICS-2000 until all air and previous eluent are purged
and no air bubbles are exiting the waste line.
5. Press Pump Off.
6. Close the waste valve. Do not overtighten. The pump is now ready for
operation.
3.7 Set System Operating Conditions

NOTE This section is an overview of the steps needed to start
up the system and begin running samples. Actual
operating parameters (flow rate, cell heater
temperature, suppressor current, etc.) depend on the
application to be run. Refer to the column manual for
the required parameters for your application.
Set or verify system operating parameters from either the Chromeleon Control
Panel or from the touch screen HOME page. Operating parameters can also be set
automatically by loading a Chromeleon sequence.
NOTE Clicking the System Startup button on the Chromeleon

Control Panel, starts the pump, suppressor, eluent
generator, and CR-TC. The flow rate, suppressor
current, and eluent concentration settings that were in
effect when the system was shut down are restored.
1. Verify that the pump is on and set to the correct flow rate.
2. Verify that the suppressor current is on and that the setting is correct.
3. Verify that the eluent generator is turned on and the correct concentration is
set. Verify that the CR-TC is turned on.
4. Verify that the cell heater is set to the correct value.
5. Verify that the column heater is set to the correct value.
Doc. 031857-01 3/03 3-11

Automatically Turning on the Suppressor and Eluent Generator

You can set up the ICS-2000 to turn on the suppressor, eluent generator, and
CR-TC automatically when the pump is turned on. To do this:
For the suppressor, select the Automatically turn on with pump option from
the SUPPRESSOR page.
For the eluent generator and CR-TC, select the option from the ELUENT
GENERATOR page.
NOTE The suppressor, eluent generator, and CR-TC are

always turned off automatically when the pump is
turned off.
3.8 Equilibrate the System and Verify Operational Status

NOTE You can monitor system functions (conductivity,
pressure, cell temperature, etc. from the Chromeleon
Control Panel or from the touch screen HOME page.
1. Allow the system to equilibrate. During equilibration, the Chromeleon

Control Panel displays the background conductivity (the conductivity of the
eluent before sample injection) and the system backpressure.
2. Monitor the background conductivity. Refer to the column manual for the
appropriate background conductivity for your application.
3. Offset the background and zero the reading by clicking the Autozero button
on the Chromeleon Control Panel (see Figure 3-4).
4. Monitor the system pressure from the Control Panel to make sure it is at the
expected pressure for the installed column (refer to the column manual for
details) and it stable.
If the pressure is less than the expected amount, gas may be trapped in the
system. Release the gas by removing the pump fitting on the injection
valve port, labeled P (2). Allow the air to escape and then reconnect the
fitting.
If the pressure fluctuates by more than about 0.13 MPa (20 psi), prime the
pump. See Section 4.3 for additional troubleshooting information.
3-12 Doc. 031857-01 3/03

If the pressure is too high, there may be a restriction in the system

plumbing. See Section 4.7 for troubleshooting information.
5. Verify that the baseline conductivity is at the expected reading for your
application and is stable. In general, it should be <30 S for a system set up
for anion analyses and <2 S for a system set up for cation analyses. See
Section 4.12 for troubleshooting information if the conductivity is too high.
See Section 4.13 if the baseline is drifting or has excessive noise (large
fluctuations in readings).
6. Verify that the cell heater is at the set point and is stable. The temperature is at
equilibrium when the Set Temperature and the Current Temperature
readings on the Control Panel are the same, or when the = symbol is
displayed next to the Column Heater temperature on the HOME page.
7. Verify that the column heater temperature is at the set point and stable. The
temperature is at equilibrium when the Set Temperature and the Current
Temperature readings on the Control Panel are the same, or when the =
symbol is displayed next to the Column Heater temperature on the HOME page.
The system is now ready for sample processing.
3.9 Prepare Samples

NOTE Sample preparation can be performed while the system
is equilibrating.
3.9.1 Collecting and Storing Samples

Collect samples in high density polyethylene containers that have been
thoroughly cleaned with deionized (DI) water. Do not clean containers
with strong acids or detergents because these can leave traces of ions on
the container walls. The ions may interfere with the analysis.
If samples will not be analyzed on the day they are collected, filter them
through clean 0.45 m filters immediately after collection; otherwise,
bacteria in the samples may cause the ionic concentrations to change over
time. Refrigerating the samples at 4 C (39 F) will reduce, but not
eliminate, bacterial growth.
Analyze samples containing nitrite or sulfite as soon as possible. Nitrite
oxidizes to nitrate, and sulfite to sulfate, thus increasing the measured
Doc. 031857-01 3/03 3-13

concentrations of these ions in the sample. In general, samples that do not

contain nitrite or sulfite can be refrigerated for at least one week with no
significant changes in anion concentrations.
3.9.2 Pretreating Samples

Analyze rainwater, drinking water, and air particulate leach solutions
directly with no sample preparation (other than filtering and possibly
diluting).
Filter groundwater and wastewater samples through 0.45 m filters
before injection, unless samples were filtered after collection.
Before injection, pretreat samples that may contain high concentrations of
interfering substances by putting them through Dionex OnGuard
cartridges. Refer to the Installation and Troubleshooting Guide for
OnGuard Cartridges (Document No. 032943) for instructions.
3.9.3 Diluting Samples

Because the concentrations of ionic species in different samples can vary
widely from sample to sample, no single dilution factor can be
recommended for all samples of one type. In some cases (for example,
many water samples), concentrations are so low that dilution is not
necessary.
Use eluent or ASTM filtered, Type I (18-megohm) deionized water or
eluent to dilute the sample. When using carbonate eluents, diluting with
eluent minimizes the effect of the water dip at the beginning of the
chromatogram. If you dilute the sample with eluent, also use eluent from
the same lot to prepare the calibration standards. This is most important
for fluoride and chloride, which elute near the water dip.
To improve the accuracy of early eluting peak determinations, such as
fluoride, at concentrations below 50 ppb, dilute standards in eluent or
spike the samples with concentrated eluent to minimize the water dip. For
example, spike a 100 mL sample with 1.0 mL of a 100 X eluent
concentrate.
3-14 Doc. 031857-01 3/03

3.10 Loading and Injecting Samples

Samples can be loaded into the sample loop through the injection port on the front
door using a syringe or vacuum syringe, or they can be loaded using an
autosampler.
For autosampler injections, the injection port tubing is disconnected from the ICS-
2000 injection valve and replaced by the autosampler outlet tubing. Other setup
requirements depend upon the model of autosampler.
Setup for an AS40 Autosampler

A relay or TTL connection is required for Chromeleon to control sample loading.
See Section B.19 for AS40 autosampler installation instructions.
Setup for an AS50 Autosampler

To use an AS50 autosampler with the ICS-2000, the AS50 must meet the
following requirements:
An injection valve cannot be installed in the AS50
The AS50 must have Moduleware version 1.11 or later installed
Control of the ICS-2000 injection valve must be enabled in the AS50
The following AS50 models are configured at the factory to meet the above
requirements:
AS50 without injection valve (P/N 061309)
AS50 without injection valve; with sample preparation (P/N 061310)
AS50 without injection valve; with sample preparation and sample tray
cooling (P/N 061311)
AS50 without injection valve; with sample tray cooling (P/N 061312)
See Section B.18 for AS50 autosampler installation instructions.
After the AS50 is configured for use with the ICS-2000, all AS50 modes of
injection (full-loop, partial-loop, and partial-loop limited-sample) are supported.
In addition, all AS50 injection valve commands (whether issued from the AS50
front panel or from Chromeleon) will control the ICS-2000 injection valve. For
Chromeleon control, the AS50 must be added to the ICS-2000 timebase (see
Section B.8). For front panel control, the AS50 and ICS-2000 can be set up for
Doc. 031857-01 3/03 3-15

stand-alone operation. This requires a TTL cable connection between the AS50
and the ICS-2000. See Section D.3 for stand-alone setup instructions.
3.10.1 Loading Samples with a Syringe

1. Make sure the injection port on the ICS-2000 front door (see
Figure 2-1) is connected to the sample port S (5) on the injection valve
(see Figure 3-12).
Figure 3-12. Injection Valve Connections
2. Fill the 1 cc syringe (P/N 016388) provided in the ICS-2000 Ship Kit
(P/N 057905) with a calibration standard or sample.
3. Insert the syringe into the injection port on the ICS-2000 front door.
4. Verify that the injection valve is in the Load position.
5. Overfill the sample loop with several sample loop volumes. Excess
sample will exit through the injection valve waste line.
6. Leave the syringe in the port.
7. Switch the injection valve to the Inject position (see Section 3.10.4).
3-16 Doc. 031857-01 3/03

3.10.2 Loading Samples with a Vacuum Syringe

1. Disconnect the waste line from port W (6) of the injection valve (see
Figure 3-12) and attach a shorter line: 25 to 30 cm (10 to 12 inches) of
PEEK or Teflon tubing.
2. Place the free end of the line into the sample.
3. Verify that the injection valve is in the Load position.
4. Insert the 1 cc syringe (P/N 016388) provided in the ICS-2000 Ship
Kit (P/N 057905) into the injection port on the ICS-2000 front door
(see Figure 2-1) and pull out the plunger to draw the sample into the
injection valve.
3.10.3 Loading Samples with an Autosampler

1. Verify that the autosampler output line is connected to port S (5) of the
ICS-2000 injection valve.
2. Prepare and fill the sample vials and place them in the autosampler
tray or cassette. Refer to the autosampler manual for detailed
instructions.
3. The sample loading process depends on the autosampler. Refer to the
autosampler manual for detailed instructions. In general, use one of
the following methods:
Include the commands for controlling sample loading in a
Chromeleon program. See the examples in Section 3.10.5.
Enter the commands for loading the sample from the autosampler
front panel.
NOTE If you are running the ICS-2000 without

Chromeleon control, see Section D.3 for stand-
alone setup and operation instructions using an
AS50 autosampler.
Doc. 031857-01 3/03 3-17

3.10.4 Injecting Samples

After loading the sample in the sample loop, switch the injection valve to
the Inject position, using one of the following methods:
Manually: Click the Inject button on the Chromeleon Control Panel
(see Figure 3-6) or touch the Inject button on the HOME page.
Automatically: Include the Inject command in a Chromeleon
program. See the examples in Section 3.10.5.
3.10.5 Example Chromeleon Commands for Loading and

Injecting Samples
The following examples show commands for loading and injecting
samples using an AS50 or AS40 autosampler.
Example AS50 Program Commands
0.000 Pump_ECD.Autozero ;Zero the baseline.

Load ;Switch the valve to Load.
Wait CycleTimeState ;Wait for cycle time (if any).
Inject ;Switch the valve to Inject.
Wait InjectState ;Wait for injection to complete.
ECD_1.AcqOn ;Start data acquisition.
14.000 ECD_1.AcqOff ;Stop data acquisition.
Example AS40 Program Commands
-2.300 Pump_ECD_Relay_1.Closed Duration=138.00 ;Note 1

0.000 Pump_ECD.Autozero ;Note 2
ECD_1.AcqOn ;Note 3
Pump_InjectValve.InjectPosition Duration=30.00 ;Note 4
30.00 ECD_1.AcqOff ;Note 5
3-18 Doc. 031857-01 3/03

AS40 Program Command Notes:
1. Close the ICS-2000 RELAY OUT 1, which is connected to the AS40

LOAD relay. This signals the AS40 to load the sample.
2. Zero the baseline.

3. Start data acquisition.
4. Switch the valve to Inject.
5. Stop data acquisition.
3.11 Process Samples

Samples can be run either manually (one at a time) or automatically (in groups or
batches).
3.11.1 Manual Sample Processing

To process samples manually, select operating parameters and commands
from the touch screen pages, or from the Chromeleon menu bar, toolbars,
and Control Panel. Commands are executed as soon as they are entered.
NOTE When you run samples manually from the front panel
(without using Chromeleon), the data is saved only
temporarily in the ICS-2000 memory. For a permanent
record of the data, connect a recording device (chart
recorder, integrator, etc.) to the analog output. See
Section B.20 for analog output connection instructions.
1. Complete the steps in Sections 3.2 through 3.8 to prepare for

operation and to start up the ICS-2000.
2. Load the sample using a syringe, vacuum syringe, or autosampler
(see Section 3.10).
3. If you are using Chromeleon, select Acquisition On from the
Control menu. Chromeleon records the signal supplied by the
detector and displays the signal plot on the Control Panel.
4. Click the Autozero button on the Control Panel or the touch screen
HOME page.
Doc. 031857-01 3/03 3-19

5. Inject the sample (see Section 3.10.4).

6. If you are using Chromeleon, monitor the chromatogram on the
Control Panel and select Acquisition Off from the Control menu
when sample data is collected.
NOTE Data from Chromeleon manual processing is saved

in the MANUAL sequence folder under the local
datasource. This data is overwritten each time a
new manual sample is processed. To save the data
from a manual run, select the MANUAL folder,
select Save As from the File menu, and enter a new
name for the sequence.
7. If you are controlling the ICS-2000 from the touch screens, select the
PLOT button on the HOME page to view a plot of the conductivity
data.
3.11.2 Automatic (Batch) Sample Processing

For batch processing, you use Chromeleon to create a list of samples (a
sequence) to be processed automatically. For each sample, the sequence
includes a program with commands and parameters for controlling the
ICS-2000, controlling the autosampler (if used), and acquiring sample
data. The sequence also includes a quantification method for peak
identification and area determination. Additional sample processing
parameters are included in the sequence (for example, the sample name,
sample type, injection volume, etc.).
After defining the sequence, you can start batch processing.
1. Complete the steps in Sections 3.2 through 3.8 to prepare for
operation and to start up the ICS-2000.
2. Create a new sequence or modify an existing one.
To create a new sequence:
a. In the Browser, select File>New. Select Sequence (using
Wizard) and click OK.
b. Complete the steps in the Sequence Wizard, adding the desired
number of samples and standards to the list. For help with any of
the steps, click the Help button on the Sequence Wizard page.
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NOTE A simple way to get started is to select the Use

Application Template option in Step 4 of the
Sequence Wizard. This option lets you select a
column and suppressor type from a list of
applications. The Wizard then copies a program
and quantification method, appropriate for the
selected application, to the sequence folder and adds
them to the sequence definition.
3. To start the sample processing, make sure the System Control Panel is
open (see Section 3.3) and is the active window. Then, select Edit
from the Batch menu. The Batch dialog box opens (see Figure 3-13).
Figure 3-13. Batch Dialog Box
Doc. 031857-01 3/03 3-21

4. Click the Add button on the Batch List tab and add the sequence you
created in Step 2. See Figure 3-14 for an example.
Figure 3-14. Batch Dialog Box with an Example Sequence Added to the Batch List
5. To start the batch, click Start.
3.12 Maintenance
This section describes routine maintenance procedures that users may perform.
All other maintenance procedures must be performed by Dionex personnel.
As Needed
Regularly check the eluent reservoir to see if it needs to be refilled.
Daily
Check the ICS-2000 component mounting panel (see Figure 2-8) for leaks or
spills. Wipe up spills. Isolate and repair leaks (see Section 4.2). Rinse off any
dried eluent with deionized water.
Check the waste container daily and empty when needed.
3-22 Doc. 031857-01 3/03

Weekly
Once a week, check fluid lines for crimping or discoloration. Relocate any
pinched lines. Replace damaged lines.
Check the junctions between the pump heads and the pump casting for
evidence of liquid leaks. If piston seal wash tubing is not connected, check the
drain tubes at the rear of the pump heads for evidence of moisture. Normal
friction and wear may gradually result in small liquid leaks around the piston
seal. If unchecked, these leaks can gradually contaminate the piston housing,
causing the pump to operate poorly. If leaks occur, replace the piston seals
(see Section 5.6).
Check the end-line filter (P/N 045987) and change if needed. When new, end-
line filters are pure white. If the system is in continuous operation, change the
end-line filter weekly, or whenever it becomes discolored. Replace the filter
more often if bacterial buildup is visible or if the eluent does not contain
solvent.
NOTE It is especially important to regularly replace end-line

filters when using aqueous eluents, which may
contaminate the filter with bacteria or algae. The
bacterial buildup may not be visible.
Every Six Months

Calibrate the cell (see Section 5.1.3).
Calibrate the vacuum degas assembly (see Section 5.1.5).
Replace the pump piston rinse seals and piston seals (see Section 5.6).
Yearly
Rebuild the injection valve (see Section 5.4).
Replace the AS40 Automated Sampler tip and tubing. The AS40/ASM
Maintenance Kit (P/N 055647) contains all of the components required to
replace the sampling tip and the tubing between the tip and the injection
valve. Instructions are included with the kit.
Perform the AS50 preventive maintenance procedure. The AS50 Maintenance
Kit (P/N 060581) contains all of the required components and instructions for
performing the procedure.
Doc. 031857-01 3/03 3-23

3-24 Doc. 031857-01 3/03

4 Troubleshooting
This chapter is a guide to troubleshooting problems that may occur while

operating the ICS-2000 Ion Chromatography System.
Section 4.1 describes error messages and how to troubleshoot them. Table 4-2
lists the messages and the page numbers where they are described.
The remaining sections in this chapter describe other operating problems and
how to resolve them. Table 4-3 lists the operating problems and the page
numbers where they are described
If you are unable to eliminate a problem, contact Dionex for help. In the U.S., call
Dionex Technical Support at 1-800-346-6390. Outside the U.S., call the nearest
Dionex office
Alarms and Error Conditions See

COLUMN HEATER EXCEEDS SAFE TEMPERATURE page 4-3
COLUMN HEATER OPEN CIRCUIT page 4-3
COLUMN HEATER SHORT CIRCUIT page 4-3
CR-TC OVER CURRENT ERROR page 4-4
CR-TC STOPPED FOR ZERO FLOW RATE page 4-4
DEGAS CALIBRATION FAILED page 4-5
EGC BOARD NOT PRESENT page 4-5
EGC-1 CALIBRATION ERROR page 4-5
EGC-1 DISCONNECTED ERROR page 4-6
EGC-1 INVALID CONCENTRATION VS FLOW RATE ERROR page 4-6
EGC-1 INVALID FLOW RATE ERROR page 4-6
EGC-1 OVER-CURRENT page 4-7
EGC-1 OVER-VOLTAGE page 4-7
HARDWARE NOT PRESENT page 4-7
LEAK SENSOR WET page 4-7
LOAD/INJECT VALVE ERROR page 4-9
OPTION NOT INSTALLED page 4-9
Table 4-2. ICS-2000 Alarms and Error Messages Summary
Doc. 031857-01 3/03 4-1

Alarms and Error Conditions See

PRESSURE SLOPE CALIBRATION ERROR page 4-9
PUMP MOTOR LOST CONTROL page 4-10
PUMP PRESSURE HARDWARE ERROR page 4-10
PUMP OVER PRESSURE page 4-10
PUMP UNDER PRESSURE page 4-11
SUPPRESSOR OVER CURRENT page 4-11
SUPPRESSOR OVER VOLTAGE page 4-12
SUPPRESSOR OVER POWER page 4-12
SUPPRESSOR NOT CONNECTED page 4-12
SUPPRESSOR STOPPED FOR FLOW RATE page 4-13
Table 4-2. ICS-2000 Alarms and Error Messages Summary (Continued)
Other Operating Problems See

Liquid Leaks page 4-13
Pump Difficult to Prime or Loses Prime page 4-15
Pump Does Not Start page 4-17
No Flow page 4-18
Erratic Flow/Pressure Reading page 4-20
Excessive System Backpressure page 4-20
Peak Ghosting page 4-21
Nonreproducible Peak Height or Retention Time page 4-22
Abnormal Retention Time or Selectivity page 4-22
No Cell Response page 4-23
High Cell Output page 4-23
Baseline Noise or Drift page 4-24
Vacuum Degas Assembly Does Not Run page 4-25
Table 4-3. Operating Problems Summary
4-2 Doc. 031857-01 3/03

4 Troubleshooting
4.1 Alarms and Error Conditions

If any of the following alarm conditions occurs, a message is displayed in the
Chromeleon Audit Trail and on the LCD touch screen.
COLUMN HEATER EXCEEDS SAFE TEMPERATURE
This error occurs when the column heater temperature is higher than the
maximum allowed. This error may occur if the ICS-2000 is operating in an
extreme environment (greater than 40 C).
To troubleshoot:
Refer to Section A.3 for environmental specifications.
COLUMN HEATER OPEN CIRCUIT
This error message occurs when the column heater is unplugged from the
component panel.
To troubleshoot:
1. Check that the column heater is correctly plugged into the component
panel.
2. If the error persists, the column heater may be faulty. Replace the
column heater (see Section 5.11).
COLUMN HEATER SHORT CIRCUIT
This error occurs when there is a short circuit on the thermistor input used to
measure the column heater temperature. This error indicates a faulty column
heater.
To troubleshoot:
Replace the column heater (see Section 5.11).
Doc. 031857-01 3/03 4-3

CR-TC OVER CURRENT ERROR
This error occurs when the current applied to the CR-TC exceeds the
maximum current allowed.
To troubleshoot:
1. Check the CR-TC cable connection.
2. If the error persists, contact Dionex for assistance. There may be a
malfunction in the CR-TC control electronics.
CR-TC STOPPED FOR ZERO FLOW RATE
This error appears normally when you click the Shutdown button on the
Chromeleon Control Panel. The message also appears when you turn off the
pump flow while the EGC current (and CR-TC) is on. The CR-TC is
automatically turned off.
To troubleshoot:
If the pump stopped unexpectedly, see Section 4.5 for pump
4-4 Doc. 031857-01 3/03

4 Troubleshooting
DEGAS CALIBRATION FAILED
This error occurs when the degas vacuum does not reach the expected level
during calibration.
To troubleshoot:
1. Retry the calibration.
2. If calibration still fails, the vacuum degas assembly may need to be
replaced. Contact Dionex for assistance.
EGC BOARD NOT PRESENT
This error occurs if Chromeleon sends a command to the ICS-2000 related to

the eluent generator and no eluent generator controller board is installed or the
ICS-2000 does not recognize the installed board.
To troubleshoot:
Contact Dionex for assistance. The ICS-2000 electronics components
cannot be serviced by the user.
EGC-1 CALIBRATION ERROR
This error occurs if the measured current is outside the expected range when
running the eluent generator calibration procedure.
To troubleshoot:
Review the procedure to verify you have set up the ICS-2000 correctly
and then rerun the calibration.
If the error re-occurs, contact Dionex for assistance.
Doc. 031857-01 3/03 4-5

EGC-1 DISCONNECTED ERROR
This error occurs if the EGC is disconnected and Chromeleon sends a

command to set an eluent generator parameter. It can also occur when
attempting to run the EGC verification test and the EGC is disconnected.
To troubleshoot:
1. Verify that the eluent generator cartridge is connected to the EGC-1
connector on top of the ICS-2000 (see Figure 2-7).
2. If the error presets, contact Dionex for assistance. There may be a
malfunction in the EGC control electronics.
EGC-1 INVALID CONCENTRATION VS FLOW RATE ERROR
The maximum eluent concentration that can be set for a particular application
depends on the suppressor type, the EGC type, and the flow rate. This error
occurs if the selected concentration is too high for the current flow rate.
To troubleshoot:
Refer to the column manual, which is included on the Dionex Reference
Library CD-ROM (P/N 053891), for the concentration of eluent to use
with your application. The CD-ROM is located in the ICS-2000 Ship Kit
(P/N 057905). Reset the eluent concentration and/or the flow rate to the
recommended values.
EGC-1 INVALID FLOW RATE ERROR
This error occurs if the flow rate is set to a value not supported by the
eluent generator. The ICS-2000 allows a flow rate range of 0.00 to
5.00 mL/min without an eluent generator. With an eluent generator, the
allowed range is 0.10 to 3.00 mL/min.The recommended operating range is
0.4 to 2.00 mL/min.
To troubleshoot:
Set the flow rate to a value within the allowed range.
4-6 Doc. 031857-01 3/03

4 Troubleshooting
EGC-1 OVER-CURRENT
This error occurs when the current applied to the eluent generator cartridge
exceeds the maximum current allowed. The EGC current is turned off to
prevent damage to the EGC. This error may occur if the liquid flow to the
cartridge is interrupted.
To troubleshoot:
See Section 4.5 for troubleshooting no flow situations.
EGC-1 OVER-VOLTAGE
This error occurs when the current applied to the eluent generator cartridge
exceeds the maximum current allowed. The EGC current is turned off to
prevent damage to the EGC. This error may occur if the liquid flow to the
cartridge is interrupted.
To troubleshoot:
See Section 4.5 for troubleshooting no flow situations.
HARDWARE NOT PRESENT
This error indicates an error in the ICS-2000 electronics.

To troubleshoot:
Doc. 031857-01 3/03 4-7

LEAK SENSOR WET
The leak sensor is installed in the drip tray at the bottom of the component
panel (see Figure 2-8). If liquid accumulates in the tray, the sensor signals the
problem and the Leak sensor wet error message appears.
To troubleshoot:
1. Locate the source of the leak by visually inspecting the tubing,
fittings, and components on the component panel.
2. Tighten fittings or replace tubing and fittings as required. Refer to
Section 4.2 for detailed troubleshooting of various types of leaks.
3. After fixing the leak, dry the drip tray thoroughly to prevent the leak
sensor from triggering additional error messages.
LOAD/INJECT VALVE ERROR
If the injection valve fails to switch position within 1 second of being toggled,
the ICS-2000 Moduleware reports an error to Chromeleon and the
Load/Inject valve error message appears.
To troubleshoot:
1. If a sequence is being executed, terminate the sequence by selecting
Stop on the Chromeleon Batch menu.
2. Turn off the ICS-2000 power briefly and then restart.
3. Try to toggle the valve from Load to Inject by clicking the Load and
Inject buttons on the ICS-2000 Control Panel in Chromeleon or on
the touch screen HOME page.
4. If the problem persists, contact Dionex for assistance.
4-8 Doc. 031857-01 3/03

4 Troubleshooting
OPTION NOT INSTALLED
This error occurs if a command is issued to control an option that is not

installed.
To troubleshoot:
Check the Chromeleon Server Configuration program to verify that the
option is enabled.
PRESSURE SLOPE CALIBRATION ERROR
This error occurs if you try to calibrate the pressure slope when the pressure is
less than 3 MPa (500 psi).
To troubleshoot:
This is a service level error message. Contact Dionex for assistance.
PUMP MOTOR LOST CONTROL
This error indicates an error in the pump controller electronics.

To troubleshoot:
PUMP PRESSURE HARDWARE ERROR
This error indicates an error in the pump controller electronics.

To troubleshoot:
Doc. 031857-01 3/03 4-9

PUMP OVER PRESSURE
The ICS-2000 has a maximum system pressure limit of 34.5 MPa (5000 psi).
When the eluent generator cartridge is configured in Chromeleon (see
Section B.13.5), the maximum system pressure limit is reduced to 20.6 MPa
(3000 psi). The pressure limit can also be set on the touch screen PUMP page
(see Section C.7). If the system pressure exceeds the set limit for at least
0.5 seconds, the pump stops and the Pump over pressure error message
appears.
To troubleshoot:
1. Check for blockages in the liquid lines by working your way
backward from the cell to the pump. See Figure 2-10 for the flow
schematic).
2. Check that the flow rate is set to the correct value.
3. Check that the high pressure limit is set to the correct value.
4. Restart the pump.
PUMP UNDER PRESSURE
The ICS-2000 has a minimum pressure limit of 0. When the eluent generator
cartridge is configured in Chromeleon (see Section B.13.5), the low pressure
limit is raised to 1.4 MPa (200 psi). The pressure limit can also be set on the
touch screen PUMP page (see Section C.7). If the system pressure falls below
the low pressure limit, the pump stops and the Pump under pressure error
message appears.
To troubleshoot:
1. Make sure the eluent reservoir is full.
2. Check for liquid leaks (see Section 4.2).
3. Check that the waste valve is closed.
4. Prime the pump (see Section B.14).
5. Restart the pump.
4-10 Doc. 031857-01 3/03

4 Troubleshooting
SUPPRESSOR OVER CURRENT
This error may be caused by an exhausted or dirty suppressor or by a

malfunction in the suppressor controller electronics.
To troubleshoot:
1. Follow the instructions in the suppressor manual to regenerate the
suppressor. Suppressor manuals are included on the Dionex
Reference Library CD-ROM (P/N 053891), located in the ICS-2000
Ship Kit (P/N 057905).
2. Follow the instructions in the suppressor manual to clean the
suppressor.
3. If a malfunction in the suppressor controller is suspected, contact
Dionex for assistance. The ICS-2000 electronics components cannot
be serviced by the user.
SUPPRESSOR OVER VOLTAGE
This error appears if you turn on the suppressor and the ICS-2000 cannot
establish a connection with the suppressor.
To troubleshoot:
1. Check the suppressor cable connection (see Section 5.10).
2. If the error persists, replace the suppressor (see Section 5.10).
Doc. 031857-01 3/03 4-11

SUPPRESSOR OVER POWER
This error appears when, in order to maintain the selected current, the ICS-
2000 is required to apply a higher voltage than the suppressor can support.
To troubleshoot:
Reduce the flow rate.
Rehydrate the suppressor. Refer to the suppressor manual for instructions.
Suppressor manuals are included on the Dionex Reference Library CD-
ROM (P/N 053891), located in the ICS-2000 Ship Kit (P/N 057905).
If the error persists, replace the suppressor (see Section 5.10).
SUPPRESSOR NOT CONNECTED
This error appears if you turn on the suppressor and the ICS-2000 cannot
establish a connection with the suppressor.
To troubleshoot:
1. Check the suppressor cable connection (see Section 5.10).
2. If the error persists, contact Dionex for assistance. There may be a
problem in the suppressor controller electronics. The ICS-2000
electronics components cannot be serviced by the user.
SUPPRESSOR STOPPED FOR ZERO FLOW RATE
This error appears normally when you click the Shutdown button on the
Chromeleon Control Panel. The message also appears anytime you turn off
the pump flow while the suppressor is on. The suppressor is automatically
turned off to prevent damage to the suppressor.
To troubleshoot:
If the pump stopped unexpectedly, see Section 4.5 for pump
4-12 Doc. 031857-01 3/03

4 Troubleshooting
4.2 Liquid Leaks

Leaking fitting
Locate the source of the leak. Tighten or, if necessary, replace the liquid line
connection (see Section 5.3). Refer to Installation of Dionex Liquid Line
Fittings (Document No. 031432) for tightening requirements. The manual is
on the Dionex Reference Library CD-ROM (P/N 053891).
Broken liquid line
Replace the line and fittings with the same length and internal diameter tubing
(see Section 5.3).
Blocked or improperly installed line
Make sure the lines are not crimped or otherwise blocked. Also, if the blocked
line is a waste line, make sure it is not elevated at any point after it exits the
ICS-2000. If a line is blocked, replace it (see Section 5.3).
Loose pump check valve
Make sure the check valves are firmly seated in the pump head. If they are
not, tighten them carefully with an open end wrench just until the leak stops.
If the leak persists, replace the check valve (see Section 5.5).
Leaking seal wash port
Leaking from the seal wash port indicates a leaking piston seal. Replace the
seal (see Section 5.6).
Damaged pump piston seal
1. Replace the piston seal (see Section 5.6).
2. If the leak persists, replace the piston (see Section 5.7).
Pump head not tight against casting
Carefully tighten the pump head mounting nuts just until the leak stops. DO
NOT OVERTIGHTEN!
Leaking pressure transducer
Make sure the liquid line connections into the pressure transducer are tight.
Refer to Installation of Dionex Liquid Line Fittings (Document No. 031432)
for tightening requirements. The manual is on the Dionex Reference Library
Doc. 031857-01 3/03 4-13

CD-ROM (P/N 053891). Replace any damaged fittings. The pressure

transducer cannot be serviced by the user. Contact Dionex for assistance.
Leaking pump head waste valve
Make sure the waste valve is closed. To close the valve, turn the knob
clockwise, and tighten fingertight. DO NOT OVERTIGHTEN!
Overtightening may damage the valve and the pump head.
If the leak persists, replace the waste valve O-ring (see Section 5.8).
Leaking suppressor
Refer to the suppressor manual for troubleshooting procedures. Suppressor
manuals are included on the Dionex Reference Library CD-ROM
Leaking injection valve
Make sure the liquid line connections to the transducer are tight. Refer to
Installation of Dionex Liquid Line Fittings (Document No. 031432) for
tightening requirements. The manual is on the Dionex Reference Library CD-
ROM (P/N 053891). Replace any damaged fittings.
Liquid leaks from behind the valve stator may indicate a scratched rotor seal.
Leaking cell
Check the waste lines for blockage; trapped particles can plug the lines and
cause a restriction and/or leak. If necessary, clear the waste lines by reversing
the direction of flow.
Make sure the plumbing downstream from the cell is clear; a blockage may
overpressurize the cell, causing it to leak. If the problem continues, contact
Dionex for assistance.
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4 Troubleshooting
4.3 Pump Difficult to Prime or Loses Prime

Excessive pressure fluctuations (more than 3% difference from one pressure
reading to the next) indicate that the pump is out of prime.
Empty eluent reservoir and/or no eluent connected
Fill the reservoir. Make sure all connections are secure.
Eluent improperly or insufficiently degassed
Check the vacuum degas settings:
1. Open the Chromeleon Server Configuration program, select the ICS-
2000 device icon under the timebase and select Properties from the
Edit menu (or double-click the ICS-2000 device icon).
2. Select the Options tab (see Figure 4-1).
Figure 4-1. ICS-2000 Server Configuration Properties: Options
3. Verify that the Degas check box is enabled under Installed Options.
Doc. 031857-01 3/03 4-15

4. Check the Degas Mode settings. Select either the Monitor option or
the Cycle option. If you select Cycle, set the time on to 30 seconds
and the time off to 10 minutes. If Cycle is already selected, try
increasing the time on or decreasing the time off.
NOTE Degas Mode options can also be selected from the touch
screen PUMP page (see Section C.7).
End-line filter is dirty or clogged

When new, end-line filters (P/N 045987) are pure white. If the system is in
continuous operation, change the end-line filter weekly, or whenever it
becomes discolored. Replace the filter more often if bacterial buildup is
visible or if the eluent does not contain solvent. See the Pressurizable
Reservoir Installation Instructions for more information about end-line filters.
NOTE It is especially important to regularly replace end-line

filters when using aqueous eluents, which may
contaminate the filter with bacteria or algae. The
bacterial buildup may not be visible.
Blockages in inlet tubing

Kinked or clogged tubing causes the pump to be starved for eluent. Replace
the tubing and fittings (see Section 5.3).
Dirty check valve
Clean or replace the pump check valve (see Section 5.5).
Liquid leaks at junction between pump head and pump casting
Use the open-end wrench (P/N 014605) provided in the ICS-2000 Ship Kit
(P/N 057905) to tighten the two acorn nuts that attach the pump head to the
pump housing (see Figure 5-10). Tighten the nuts evenly (12 in-lb torque).
If the leak persists, replace the piston seal (see Section 5.6).
Liquid leaks from the seal wash port
Replace the piston seal (see Section 5.6).
Scratched pump piston
Check the pump pistons for scratches and replace if necessary (see
Section 5.7).
4-16 Doc. 031857-01 3/03

4 Troubleshooting
4.4 Pump Does Not Start

No power (front Power LED indicator is not lit)
Check that the power cord is plugged in.
Check the main power fuses and replace if needed (see Section 5.16).
No communication between ICS-2000 and Chromeleon
Verify that the USB cable is connected correctly. See Section B.5 for
installation instructions.
Pump is turned off
Turn on the pump from either the Chromeleon Control Panel or the ICS-2000
touch screen HOME page.
Flow rate is set to 0
Set the flow rate from either the Chromeleon Control Panel or the ICS-2000
4.5 No Flow
Pump waste or priming valve open (see Figure 4-2).
Close the valves by turning the knobs clockwise until fingertight. DO NOT
OVERTIGHTEN! Overtightening may damage the valve and the pump
head.
Priming Valve
Waste Valve
Figure 4-2. Waste and Priming Valves
Doc. 031857-01 3/03 4-17

Flow rate is set to 0

Set the flow rate from the Chromeleon Control Panel or from the touch screen
HOME page.
Eluent valve is closed

Open the eluent valve from the Chromeleon Control Panel or from the touch
screen PUMP page.
Pump not primed
Prime the pump (see Section B.14).
Broken pump piston
Replace the piston (see Section 5.7).
Eluent generator degas tubing assembly ruptured
Replace the EluGen cartridge holder (see Section 5.17).
4.6 Erratic Flow/Pressure Reading

Pump needs priming
Damaged piston seal
Dirty pump check valve
Clean or replace the check valve (see Section 5.5).
Leaking liquid lines or fittings
Check the liquid lines and fittings for small leaks. Tighten or, if necessary,
replace the liquid line connection (see Section 5.3). Refer to Installation of
Dionex Liquid Line Fittings (Document No. 031432) for tightening
requirements. The manual is on the Dionex Reference Library CD-ROM
(P/N 053891).
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4 Troubleshooting
4.7 Excessive System Backpressure

Restriction in the system plumbing
Check all liquid lines for crimping or blockage. Make sure the ferrule fittings
are not overtightened onto tubing. Refer to Installation of Dionex Liquid Line
Fittings (Document No. 031432) for details. The manual is on the Dionex
Reference Library CD-ROM (P/N 053891). If you have trouble isolating the
restriction, refer to Section 5.2.
Plugged or damaged fitting
Isolate the faulty fitting by loosening fittings one by one until the pressure
returns to normal. Repair or replace the fitting (see Section 5.3).
Flow rate through the columns too high
Set the correct rate for your application. If an incorrect flow rate calibration is
suspected, calibrate the flow (see Section 5.1.4).
Clogged column bed supports
Refer to the instructions in the column manual for troubleshooting guidance.
Column manuals are included on the Dionex Reference Library CD-ROM
Contaminated columns
Clean the columns as instructed in the column manual.
Plugged injection valve passages
4.8 Peak Ghosting

Ghosting is the appearance of extraneous peaks in a chromatogram. These may
be late-eluting peaks from a previous injection, or they may be the result of a
contaminated standard or eluent, or a malfunctioning injection valve. These peaks
may co-elute with peaks of interest, resulting in nonreproducible peak
heights/areas.
Insufficient time between sample injections
Wait until the previous sample has been completely eluted before making
another injection.
Doc. 031857-01 3/03 4-19

Insufficient flush between samples

Flush the sample loop with at least 10 loop volumes of deionized water or
sample between sample injections.
Incorrect or contaminated standards
Remake standards.
Incorrect or contaminated eluent
Verify that the correct eluent concentration is selected.
Install or replace the end-line filter on the end of the deionized water line (see
Section 3.4.1).
Malfunctioning injection valve
1. Rebuild the injection valve (see Section 5.4).
2. If the valve leak persists, contact Dionex for assistance.
4.9 Nonreproducible Peak Height or Retention Time

Column overloading
Dilute the sample (see Section 3.9).
Liquid leaks
Locate and eliminate the leaks (see Section 4.2).
Incomplete or imprecise filling of the sample loop
1. Fill the sample loop until excess sample exits the waste line.
2. Inspect the 1-cc syringe (P/N 016388) and replace if damaged.
Pump not primed properly
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4 Troubleshooting
4.10 Abnormal Retention Time or Selectivity

Incorrect eluent
Check the EGC concentration setting.
Contaminated or degraded sample
Take appropriate precautions when preparing and storing samples to prevent
contamination and degradation (see Section 3.9).
Contaminated column
1. Clean the column as instructed in the column manual. Column manuals
are included on the Dionex Reference Library CD-ROM (P/N 053891),
located in the ICS-2000 Ship Kit (P/N 057905).
2. If cleaning is unsuccessful, replace the column.
4.11 No Cell Response

Cell not properly installed
Verify that the cell front cover is flush against the component panel. If
necessary, tighten the two mounting screws. When the cell is correctly
installed and the screws tightened, an electronics connector on the cell plugs
into a receptacle inside the ICS-2000.
No flow from pump
This condition has several possible causes. See Section 4.4 and Section 4.5
for details.
Cell electronics malfunctioning
Use the Chromeleon Wellness Panel diagnostics to test the electronics (see
Section 5.1 and the Chromeleon online Help for instructions). If the variance
reading is outside the tolerance range (less than 1 S), the electronics are
malfunctioning. Contact Dionex for assistance. The ICS-2000 electronics
Doc. 031857-01 3/03 4-21

4.12 High Cell Output

Background not suppressed by suppressor
Verify that the suppressor is turned on and the current is set to the correct
value. Refer to the suppressor manual for additional troubleshooting
guidance. Suppressor manuals are included on the Dionex Reference Library
CD-ROM (P/N 053891), located in the ICS-2000 Ship Kit (P/N 057905).
Sample concentration too high
Dilute the sample Section 3.9.3.
Wrong eluent
Check that you are using the correct eluent for your application.
Background conductivity not offset from conductivity reading
Before making an injection, allow the background conductivity to equilibrate,
and then press Autozero on the Chromeleon Control Panel or the ICS-2000
Cell out of calibration
Recalibrate the cell (see Section 5.1.3).
4.13 Baseline Noise or Drift

Flow system leak; erratic baseline
Check all fittings and liquid lines for leaks. Tighten or, if necessary, replace
all liquid line connections. Refer to Installation of Dionex Liquid Line Fittings
(Document No. 031432) for tightening requirements. The manual is on the
Dionex Reference Library CD-ROM (P/N 053891).
Trapped gases
Release any trapped gases in the cell by loosening the lines to and from the
cell and then retightening them. Also loosen and retighten the fittings to and
from the suppressor eluent ports.
Pump not properly primed
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4 Troubleshooting
Incorrect eluent
Check the EGC concentration setting.
Inadequate system backpressure
Add backpressure tubing between the injection valve and the ELUENT OUT
port on the EGC to maintain a pressure of 16 MPa 0.7 MPa (2,300 psi
100 psi). See Section B.13.6 for details.
Rapid changes in ambient temperature
Make sure the ambient temperature is between 4 and 40 C (40 and 104 F).
Make sure air conditioning and heating vents are directed away from the ICS-
2000 and the ICS-2000 front door is closed.
Insufficient system equilibration following changes to operating
parameters; especially apparent when operating at high sensitivities
Allow a longer system equilibration time (up to 2 hours) before starting
operation.
Incorrect suppressor operating conditions
Refer to the suppressor manual for troubleshooting information. Suppressor
manuals are included on the Dionex Reference Library CD-ROM
Cell above or below temperature
Contact Dionex for assistance.
Damaged piston seal
Doc. 031857-01 3/03 4-23

4.14 Vacuum Degas Assembly Does Not Run

Degas option not enabled in Chromeleon
a. Open the Chromeleon Server Configuration program. Select the ICS-
2000 device icon under the timebase and select Properties from the Edit
menu (or double-click the ICS-2000 device icon).
Select the Options tab (see Figure 4-3).
Figure 4-3. ICS-2000 Server Configuration Properties: Options.
4-24 Doc. 031857-01 3/03

4 Troubleshooting
b. Under Installed Options, verify that the Degas check box is selected.
c. Under Degas Mode, verify that the Always Off option is not selected. If
it is, select one of the following settings:
Cycle, and select On: 30 seconds and Off: 10 minutes
Monitor
d. If the Degas Mode settings are correct, but the degas assembly still does
not run, test the assembly by selecting the Always On option. The pump
should turn on immediately. If it does not, the vacuum degas assembly
may need to be replaced. Contact Dionex for assistance.
NOTE Degas Mode options can also be selected from the touch
screen PUMP page (see Section C.7).
Select the Degas Mode, Always On option only when testing the vacuum
degas assembly. Do not select the Always On option for routine use.
e. If the degas pump runs when you select Always On, but does not run
when Monitor mode is selected, recalibrate the degas assembly (see
Section 5.1.5).
Doc. 031857-01 3/03 4-25

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5 Service
This chapter describes ICS-2000 service and repair procedures that the user can
perform. All procedures not included here, including electronics-related repair
procedures, must be performed by Dionex personnel. For assistance, contact
Dionex Technical Support. In the U.S., call 1-800-346-6390. Outside the U.S.,
call the nearest Dionex office.
Before replacing any part, refer to the troubleshooting information in Chapter 4 to
isolate the cause of the problem.
Substituting non-Dionex parts may impair ICS-2000 performance,
thereby voiding the product warranty. Refer to the warranty statement
in the Dionex Terms and Conditions for more information.
5.1 Diagnostic and Calibration Procedures

Diagnostic and calibration procedures can be performed either from the touch
screen or from the Chromeleon Wellness Panel (see Figure 5-1).
For an overview of the Wellness Panel features, see Section 5.1.1. For instructions
on performing calibration and diagnostic procedures, see the following sections:
Calibrating the Conductivity Cell (Section 5.1.3)
Calibrating the Flow Rate (Section 5.1.4)
Calibrating the Vacuum Degas Assembly (Section 5.1.5)
Doc. 031857-01 3/03 5-1

5.1.1 Chromeleon Wellness Panel Overview
NOTE Do not open a System Wellness Control Panel if the

name includes "Service.pan." These Wellness panels are
reserved for use by Dionex Service Representatives.
To Open the Wellness Panel
1. Open the Chromeleon Browser and expand the Dionex Templates

folder.
2. Expand the Panels folder and then the Wellness folder.
3. In the right pane of the Browser window, double-click ICS-
1000_1500_2000_Wellness_user.pan.The Wellness Panel appears.
4. Open the Control menu and click the name of the ICS-2000 timebase
at the bottom of the menu. This connects the Wellness Panel to the
ICS-2000 and enables the controls on the panel.
Figure 5-1. Chromeleon Wellness Panel
5-2 Doc. 031857-01 3/03

5 Service
Use the Wellness Panel to perform the following functions:

Calibrate the pump flow rate
Calibrate the vacuum degas assembly
Calibrate the conductivity cell
Test the conductivity cell electronics, using a dummy cell
Upload calibration values from the ICS-2000 to the Chromeleon
Wellness database
After completing a calibration procedure from the touch screen,
always update the Chromeleon Wellness database by clicking the
Upload button on the Chromeleon Wellness Panel (see Figure 5-1).
This action ensures that the current calibration information is stored
in Chromeleon as well as in the ICS-2000.
Doc. 031857-01 3/03 5-3

5.1.2 Diagnostic and Calibration Touch Screen Overview

Select DIAGNOSTIC from the touch screen menu of pages. The
DIAGNOSTIC page opens (see Figure 5-2). From there, you can access
individual diagnostic and calibration pages.
NOTE The Service button provides access to service

functions that are performed only by Dionex
personnel. An access code is required to go to the
service pages.
Figure 5-2. System Diagnostic Menu Page
NOTE The two Diagnostic touch pages, EGC RESISTIVE

LOAD and EGC VERIFICATION, display the results
of the EGC validation procedure, which is normally
performed by Dionex personnel. Contact Dionex for
more information.
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5 Service
5.1.3 Calibrating the Conductivity Cell

When to Calibrate
After every 6 months of use

NOTE Do not use this procedure to calibrate a new cell. If you
are replacing a cell, see the instructions in Section 5.9 to
install the new cell and calibrate it.
Items Needed Description
1.0 mM KCl solution Prepare by dissolving 0.07456 g of reagent-

grade KCl in 1 liter of 18-megohm DI
water.
Backpressure tubing to provide Use 0.076-mm (0.003-in) ID yellow PEEK

at least 7 MPa (1000 psi) tubing (P/N 049715).
1. Open the ICS-2000 Wellness Panel in Chromeleon (see

Section 5.1.1), oropen the touch screen ELECTRIC CONDUCTIVITY
CALIBRATION page (see Figure 5-3).
Figure 5-3. Electric Conductivity Calibration Page
Doc. 031857-01 3/03 5-5

2. On the Wellness Panel under Electric Conductivity Cell

Calibration, click Offset Cal, or touch Run Offset Cal on the ICS-
2000 touch screen.
3. When the offset calibration is complete, click Slope Cal on the
Wellness Panel, or touch Run Slope Cal on the ICS-2000 touch screen.
4. If you are using the Wellness Panel, click Log to record the new
calibration values in the Audit Trail.
5. Disconnect the pump output line from the injection valve.
6. Disconnect the line from the suppressor ELUENT OUT port to the cell
inlet and connect the pump output line directly to the cell inlet.
7. Verify that there is a minimum of 7 MPa (1000 psi) of backpressure.
8. If you are using the touch screens to perform the calibration, open the
CONDUCTIVITY CELL page (see Figure 5-4).
Figure 5-4. Conductivity Cell Page
9. On the Wellness Panel under Conductivity Cell Calibration, click

Cell 35 C, or touch 35 C on the ICS-2000 touch screen. Allow the cell
to reach this temperature and then wait an additional 5 minutes to let
it stabilize. When the temperature has stabilized, an = symbol is
displayed to the right of the temperature reading on the
CONDUCTIVITY CELL page.
5-6 Doc. 031857-01 3/03

5 Service
10. Select 1.00 mL/min to begin pumping 1.0 mM KCl through the cell at
1.0 mL/min.
11. Wait until the total conductivity reading stabilizes (in about
15 minutes) and then select Calibrate on the Wellness Panel or the
ICS-2000 touch screen.
After calibration, the conductivity reading should be 147.00 2 S
and the cell constant should be between 120 and 180. If this is not the
case, contact Dionex for help.
12. If you are using the Wellness Panel, click Log to record the new
calibration values in the Audit Trail.
13. If you are using the ICS-2000 touch screen, record the new
calibration values in the Chromeleon Wellness database. To do this,
open the Wellness Panel (see Section 5.1.1) and click Upload under
Update Wellness Database.
14. Flush the KCl solution from the system by pumping deionized water
through the cell. When the conductivity drops to less than 1 S/cm,
stop the pump.
15. Reconnect the pump to the injection valve and reconnect the line
from the suppressor to the cell inlet.
Doc. 031857-01 3/03 5-7

5.1.4 Calibrating the Flow Rate

When to Calibrate
If you run the ICS-2000 Operational Qualification or Performance

Qualification and it fails.
Items Needed
0.076 mm (0.003 in) ID yellow PEEK tubing (P/N 049715) to create

14 2 MPa (2000 300 psi) of backpressure (if needed)
Deionized water
Balance capable of weighing more than 10 grams with 0.001 grams
readability
Tared beaker
To Calibrate

Section 5.1.1), or open the ICS-2000 touch screen FLOW RATE page
(see Figure 5-5).
Figure 5-5. Flow Rate Page
2. Verify that there is 14 1.4 MPa (2000 200 psi) of backpressure.
5-8 Doc. 031857-01 3/03

5 Service
3. On the Chromeleon Wellness Panel under Pump Flow Rate

Calibration, select Reset Cal, or touch Reset Cal on the ICS-2000
touch screen.
4. Select 1 mL/min to set the flow rate and begin pumping deionized
water.
5. Allow the pump to stabilize for 20 minutes.
6. If you are using the Wellness Panel, click 5.00 min to start the timer. If
you are using the touch screen, start an external timer. Immediately
start collecting water into the tared beaker.
7. Collect the water for exactly 5.00 minutes.
8. Enter the weight of the water (in grams).
9. If you are using the Wellness Panel, click Calibrate to download the
value to the ICS-2000.
10. To recheck the value, wait at least 15 minutes, and then repeat the
calibration.
11. If you are using the Wellness panel, click Log to record the new
calibration value in the Audit Trail.
12. If you performed the calibration from the ICS-2000 touch screen,
record the new calibration values in the Chromeleon Wellness
database. To do this, open the Wellness Panel (see Section 5.1.1) and
click Upload.
Doc. 031857-01 3/03 5-9

5.1.5 Calibrating the Vacuum Degas Assembly

When to Calibrate
After every 6 months of use

Section 5.1.1), or open the ICS-2000 touch screen PUMP DEGAS page
(see Figure 5-6).
Figure 5-6. Pump Degas Page
2. On the Wellness Panel under Degas Calibration, select Calibrate, or

touch Calibrate on the ICS-2000 touch screen. The degas pump runs
for 90 seconds to allow a vacuum to be created. After 90 seconds, the
vacuum degas pressure reading is recorded. When the vacuum degas
assembly is running in monitor mode, this calibration value is used to
determine when to turn on the degas pump.
3. If you are using the Wellness panel, click Log to record the new
calibration value in the Audit Trail.
4. If you performed the calibration from the ICS-2000 touch screen,
record the new calibration values in the Chromeleon Wellness
database. To do this, open the Wellness Panel (see Section 5.1.1) and
click Upload under Update Wellness Database.
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5 Service
5.2 Isolating a Restriction in the Liquid Lines

A restriction in the liquid plumbing will cause excessive system backpressure.
1. Begin pumping eluent through the system (including the columns).
2. Follow the ICS-2000 flow schematics in Figure 5-7 and Figure 5-8 and work
backward through the system, beginning at the suppressor Regen Out exit.
One at a time, loosen each fitting and observe the pressure. The connection at
which the pressure drops abnormally indicates the point of restriction.
NOTE The numbers on the flow schematic indicate the order in

which liquid flows through the system components.
If the restriction has caused such high pressure that the system cannot be
operated, you must work forward through the flow schematic, adding parts
one at a time until an abnormal pressure increase (and hence, the restriction) is
found.
3. If the restriction is in the tubing or fitting, remove the restriction by back
flushing or by replacing the tubing or fitting (see Section 5.3).
Doc. 031857-01 3/03 5-11

1 EGC
DEIONIZED 6 OUT
WATER
OUT
IN OUT
OUT
PUMP 17
DEGAS EGC
8 DEGAS
SUPPRESSOR
IN OUT
HEAT EXCHANGER
13
CR-TC 14 IN
7 COND OUT
SEPARATOR COLUMN
16 CELL
15
COLUMN HEATER
PULSE IN
DAMPER
5 11
SAMPLE
IN
S L OUT
10 W 9 C
4 12
GUARD
L P PRESS.
XDUCER.
VALVE
IN
WASTE
WASTE
18
OUT OUT
3
PUMP PUMP
HEAD HEAD
IN IN
WASTE
IN
2 OUT
ELUENT
VALVE
Figure 5-7. ICS-2000 Flow Schematic
NOTE The numbers on the flow schematic indicate the

order in which liquid flows through the system
components.
5-12 Doc. 031857-01 3/03

5 Service
EGC VENT
EGC
Send To
Waste
NOTE: The EGC Degas fittings
INLET OUTLET
EGC EGC
IN OUT
Connected to
Pump Pulse TO PUMP/
DAMPER
Dampler
TO DEGAS
ELUENT IN EGC
DEGAS
TO DEGAS
ELUENT OUT
DEGAS
ELUENT OUT
CR-TC
Eluent
Out
Regen In
TO CR-TCEluent Out TO CR-TC
ELUENT OUT ELUENT IN
(yellow) WASTE,
Connected to (red)
GAS
TO INJ -TC Regen Out Eluent In
Inject Valve CR SEPARATOR
VALVE IN - P TO EN IN
Port P (2) E G g e)
R an
(or
TO CR-TC
REGEN OUT
Connected to (blue)
Connect to
TO SRS/AES Gas Separator
Suppressor REGEN OUT
Regen Out Assembly
Figure 5-8. Eluent Generator Flow Schematic
Doc. 031857-01 3/03 5-13

5.3 Replacing Tubing and Fittings

The ICS-2000 is plumbed with the tubing and tubing assemblies listed below.
Tubing Size and Type Color Used For
0.125-mm (0.005-in) ID PEEK Red Connection from pump pulse damper

(P/N 044221) to pressure transducer
0.25-mm (0.010-in) ID PEEK Black Connections between other system

(P/N 042690) components
0.50-mm (0.020-in) ID PEEK Orange Connection from injection port to

(P/N 042855) injection valve
0.75-mm (0.030-in) ID PEEK Green Connection from injection valve to

(P/N 044777) waste
1.58-mm (0.062-in) ID Teflon Clear Connection from pump to degas or

(P/N 014157) eluent reservoir; pump waste
25 L sample loop Orange Connection between ports L (1) and

(P/N 042857) L (4) on the injection valve
10-32 fittings (P/N 043275) and ferrules (P/N 043276) are used for most
tubing connections. For tightening requirements, refer to Installation of
Dionex Liquid Line Fittings (Document No. 031432). The manual is on the
Dionex Reference Library CD-ROM (P/N 053891).
1/8-in fittings (P/N 052267) and ferrules (P/N 048949) are used for
connections to the suppressor REGEN OUT port and the eluent reservoir.
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5 Service
5.4 Rebuilding the Injection Valve

Dionex recommends rebuilding the injection valve annually. The Injection Valve
Rebuild Kit (P/N 057896) contains all required replacement parts.
NOTE Substitution of non-Dionex parts may impair valve

performance and void the product warranty.
1. Turn off the pump from the ICS-2000 Control Panel in Chromeleon or from
2. Open the ICS-2000 front door.
3. Disconnect each liquid line connected to the injection valve.
4. Follow the instructions provided in the Rebuild Kit to replace the rotor seal,
isolation seal, and stator face.
5. Reconnect all liquid lines to the injection valve (see Figure 5-9).
6. Close the door.
7. Turn on the pump.
Figure 5-9. Injection Valve Plumbing
NOTE A pressure restrictor coil may be installed between

Port P and the line labeled TO INJECT VALVE - P.
Doc. 031857-01 3/03 5-15

5.5 Cleaning and Replacing the Pump Check Valves

A dirty check valve causes erratic flow rates and pressures. In addition, it
may cause the pump to lose prime and/or be difficult to reprime. If possible,
replace dirty check valves. If new check valves are not available, follow the
instructions for cleaning.
Replacing Check Valves

1. Close the eluent valve from the ICS-2000 Control Panel in Chromeleon (or
open the ICS-2000 touch screen PUMP page and select Eluent Valve Closed).
2. Turn off the main power switch, to ensure that you do not unintentionally start
the ICS-2000.
3. To prevent contamination of pump parts, put on a pair of rubber gloves before
disassembling the pump head.
4. Disconnect the tube fittings from the inlet and outlet check valve assemblies
on the primary pump head (see Figure 5-10).
5. Use a 1/2-inch wrench to loosen both check valve assemblies. Remove the
check valve assemblies from the pump head.
Outlet Check
Valve
Primary
Pump Head
Secondary
Pump Head
Acorn Nuts
Inlet Check
Valve
Figure 5-10. Pump Heads
NOTE The inlet check valve assembly housing has a 1/4-28 port.
The outlet check valve assembly housing has a 10-32 port.
5-16 Doc. 031857-01 3/03

5 Service
6. If you are installing new cartridges

(P/N 045994) in the existing check valve Double-hole Single-hole
housings, place the cartridge in the inlet
check valve housing with the double-hole
end of the cartridge visible and place the
cartridge in the outlet housing with the
single-hole end visible. Inlet Outlet
Check Check
NOTE The pump will not operate Valve Valve
properly unless the cartridge is
installed in the housing in the
correct orientation. Liquid flows
through the check valve in the
large single hole and out the
small double holes.
7. Install the inlet check valve assembly (P/N 045722) on the bottom of the
primary pump head. Install the outlet check valve assembly (P/N 045721) on
the top of the head. Tighten the check valves fingertight, and then use a
wrench to tighten an additional one-quarter to one-half turn.
Overtightening may damage the pump head and check valve housing
and crush the check valve seats.
8. Reconnect the liquid lines. Turn on the ICS-2000 main power.

9. Open the eluent valve from the ICS-2000 Control Panel in Chromeleon (or
select Eluent Valve Closed on the ICS-2000 touch screen PUMP page).
11. When the ICS-2000 is at operating pressure, check for leaks from the check
valves. Tighten a check valve a little more only if it leaks.
Cleaning Check Valves

1. Carefully remove the check valve cartridges from the valve housings.
2. Place the check valve housings and cartridges in a beaker with methanol.
Sonicate or agitate the parts for several minutes.
3. Rinse each check valve housing and cartridge thoroughly with filtered
deionized water.
4. See Step 6 through Step 11 above to reinstall the check valves and complete
the procedure.
Doc. 031857-01 3/03 5-17

5.6 Replacing a Pump Piston Seal and Piston Rinse Seal

A damaged seal allows leakage past the piston, as well as leakage from the
piston seal wash housing. The pump may be difficult to prime, flow rates may
be unstable, and there may be baseline noise.
Preparation
1. Rinse the pump flow path with deionized water. Direct the flow to waste by
opening the waste valve on the secondary pump head (see Figure 5-13). To
open the valve, turn the knob one-quarter to one-half turn counterclockwise.
2. After rinsing, close the waste valve.
3. Close the eluent valve from the ICS-2000 Control Panel in Chromeleon (or
open the touch screen PUMP page and select Eluent Valve Closed).
4. To prevent contamination of pump parts, put on a pair of rubber gloves before
disassembling the pump head.
Removing the Head and Piston

the ICS-2000.
2. Disconnect all tubing connections to the pump head.
3. Locate the open end wrench (P/N 014605) provided in the ICS-2000 Ship Kit
(P/N 057905). Use the wrench to remove the two acorn nuts (see Figure 5-10)
from the pump head.
4. Slowly pull the head and allow it to separate from the housing. Carefully
disengage the head from the piston by pulling the head straight off and away
from its mounting studs.
Lateral motion while disengaging the pump head from the piston may
break the piston.
Un mouvement latral pendant la sparation de la tte et du piston

peut casser le piston.
Vermeiden Sie Seitwrtsbewegungen, wenn Sie den Kopf vom Kolben

lsen. Andernfalls kann der Kolben brechen.
5-18 Doc. 031857-01 3/03

5 Service
5. Place the head (front end down) on a clean work surface and lift off the spacer
to expose the piston seal (see Figure 5-11 or Figure 5-12).
Priming Valve Knob

(P/N 055709)
Outlet Check
Valve Assembly
(P/N 045721)
O-Ring
(P/N 055752)
Piston Seal
(P/N 055870)
Spacer with Drain

(P/N 057913) Primary Pump Head
(P/N 055711)
Piston Rinse Seal
(P/N 048722) O-Ring
(P/N 014895)
O-Ring Inlet Check

(P/N 059283 Valve Assembly
Seal Guide (P/N 045722)
Piston (P/N 058032)
(P/N 052840)
Figure 5-11. Primary Pump Head
Waste Valve Knob

(P/N 055710)
O-Ring
(P/N 055752)
Piston Seal
(P/N 055870)
Spacer with Drain Secondary

(P/N 057913) Pump Head
(P/N 055712)
Piston Rinse Seal
(P/N 048722) O-Ring
(P/N 014895)
Seal Guide
(P/N 058032) O-Ring
(P/N 059283
Piston
(P/N 052840)
Figure 5-12. Secondary Pump Head
Doc. 031857-01 3/03 5-19

6. The piston does not come off as part of the pump head assembly because it is
captured by a magnetic retention system. After removing the pump head, hold
the shaft of the piston (near the base), tilt the piston slightly, and pull the
piston away from the pump.
Installing the New Piston Rinse Seal

1. Remove the guide from the spacer to expose the piston rinse seal and O-ring.
Remove the O-ring.
2. Remove the old piston rinse seal from the guide as follows:
a. Hold the guide with the flat side facing up.
b. To dislodge the piston rinse seal, gently insert the shaft of the piston
through the small hole in the center of the guide (see photo below).
c. Pull the seal off the end of the piston shaft and remove the piston from the
guide.
3. Hold the new piston rinse seal (P/N 048722) with the grooved side facing up.
4. Using your fingertip, gently press the piston rinse seal into the guide until the
edge of the seal is below the surface of the guide.
The piston rinse seal is made of soft plastic. Do not press on the seal
with anything hard or sharp, including your fingernail. If the seal is
nicked or gouged, it will not seal properly and may result in leaks.
5. Place the new O-ring (P/N 059283) into the groove in the guide.
6. Remove the O-ring from the groove in the flat side of the spacer and replace it
with the new O-ring (P/N 014895).
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5 Service
7. In one hand, hold the guide with the O-ring and piston rinse seal facing up
(this prevents the O-ring from falling out). In the other hand, hold the spacer
with the cavity facing down.
8. Gently press the guide into the cavity in the spacer until it is fully seated.
Removing the Piston Seal from the Head

1. Fill the head cavity with deionized water by injecting the liquid through either
the piston opening or the inlet check valve.
2. Reinsert the piston approximately 1/8 inch into the seal.
3. If this is the primary pump head, install a 10-32 fitting plug (P/N 042772) on
the outlet check valve. Tighten the plug.
4. If this is the secondary pump head, install a 10-32 fitting plug (P/N 042772)
in both the inlet and outlet ports. Tighten the plugs.
5. Push the piston into the head. (This should hydraulically unseat the seal from
the head.) Remove the piston and pull off the seal.
NOTE If the piston seal is not removed, make sure the 10-32
fitting plug(s) are tight and add more water. Make sure
the head contains no air bubbles, and then repeat Steps
2 and 5.
6. Remove the 10-32 fitting plug(s).
Installing the New Piston Seal

1. Open the priming valve knob (primary pump head) or waste valve knob
(secondary pump head) by turning the knob one-quarter to one-half turn
counterclockwise.
2. Push the piston through the spacer and then through the new seal. Insert the
piston and seal into the pump head until the seal makes contact with the
bottom of the counterbore.
NOTE If necessary, lubricate the seal with a small amount of

isopropyl alcohol to facilitate insertion.
3. To seat the seal, push down on the spacer until it is flush with the head. A
clicking sound indicates that the seal is correctly seated.
4. Close the priming valve knob or waste valve knob.
Doc. 031857-01 3/03 5-21

Reinstalling the Head and Piston

Dionex recommends reinstalling the head and piston as a single assembly, so that
the piston centers itself onto the magnetic follower.
1. Hold the assembled spacer and guide with the drain tubes aligned vertically
and press the spacer into the head until it is flush with the indented surface of
the head.
2. Insert the piston so that 1/4 inch of the shaft is exposed. This ensures that the
magnet in the follower picks up the piston. (The follower is the cylinder that
holds the piston in place as it moves in and out of the pump head assembly.)
3. Reinstall the head and piston assembly; use a wrench to tighten the nuts
evenly (12 in-lb torque).
Completing the Procedure

1. Reconnect all liquid lines to the pump head.
2. Turn on the main power switch.
3. Open the eluent valve.
5.7 Replacing a Pump Piston

Continued leaking of the piston seal after installation of a new seal (assuming
the pump head is tight) indicates a dirty, scratched, or broken piston.
Follow the instructions in Section 5.6 to install a new piston (P/N 052840) and
piston seal (P/N 055870).
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5 Service
5.8 Replacing the Waste Valve or Priming Valve O-Ring

A damaged O-ring causes leakage around the base of the waste valve or
priming valve knob.
1. Close the eluent valve from the Control Panel in Chromeleon (or open the
ICS-2000 touch screen PUMP page and select Eluent Valve Closed).
the ICS-2000.
3. To remove the waste valve or priming valve from the pump head (see
Figure 5-13), turn the knob counterclockwise until it is loose, and then pull
the knob straight out of the cavity in the pump head.
Priming Valve
Waste Valve
Figure 5-13. Waste and Priming Valves
4. If the O-ring is removed with the valve knob in Step 2, pull the O-ring off the
end of the knob (see Figure 5-14). If the O-ring is not removed with the valve
knob, insert a thin object (for example, the bent end of a paper clip) into the
cavity in the pump head and carefully pull out the O-ring. Do not scratch the
cavity.
Scratches in the cavity will cause leaks around the base of the knob
while the pump is being primed.
Doc. 031857-01 3/03 5-23

Valve Knob
O-Ring
(P/N 055752)
Figure 5-14. Waste Valve or Priming Valve O-Ring Replacement
5. Slide a new O-ring (P/N 055752) over the end of the valve.
6. To reinstall the valve containing the new O-ring, turn the knob clockwise and
then tighten fingertight.
NOTE It is normal to encounter resistance after several

rotations of the knob; the O-ring is being pushed
into the cavity of the pump head.
7. Turn on the main power switch.

8. Open the eluent valve.
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5 Service
5.9 Replacing the Conductivity Cell

1. Turn off the ICS-2000 power.
2. Open the front door and disconnect the tubing from the CELL IN and CELL
OUT fittings (see Figure 5-15, View A). Loosen the two screws on the cell
front cover. The screws remain attached (see Figure 5-15, View B).
Unscrew
Disconnect
Unscrew
View A View B
Figure 5-15. Removing the Cell Front Cover
3. Grip the two loosened screws

and pull the cell cover toward
you to remove it from the
component panel. Do not pull
from the CELL IN and CELL
OUT fittings.
4. Continue pulling on the cover

until the attached cell assembly
slides out the front of the ICS-
2000 (see Figure 5-16).
Figure 5-16. Removing the Cell Assembly
Doc. 031857-01 3/03 5-25

5. Slide the new cell assembly into the opening in the component panel until it
stops and the cell cover is flush against the component panel. The cells
electronic connector automatically plugs into a connector inside the ICS-2000
when you push the assembly into the opening.
6. Tighten the screws on the cell front cover fingertight.
7. Reconnect the inlet and outlet lines.
8. Turn on the ICS-2000 power.
9. Calibrate the new cell in Chromeleon or on the ICS-2000 touch screen
DIAGNOSTIC page. Cell calibration of a new cell consists of three parts:
Run the offset calibration, which measures the output of the cell
electronics alone and determines an offset value to be applied to raw
conductivity readings.
Run the slope calibration, which measures the output of the cell
electronics when a built-in dummy cell, which provides a constant
conductivity reading of 21 S, is automatically enabled. The slope value
is applied to raw conductivity readings.
Enter the cell constant measured at the factory. The ICS-2000 uses the cell
constant to determine the measured conductivity.
To calibrate the cell in Chromeleon:
a. Open the Wellness Panel (see Section 5.1.1)
b. Under Electric Conductivity Cell Calibration, click Offset Cal.
c. When the offset calibration is complete, click Slope Cal.
d. Click Calibration Details. Under Conductivity Cell Cal Details, enter
the Cell Constant value printed on the front of the cell.
e. In the field next to the Download button, verify that Current is selected
and then click Download to download the new value to the ICS-2000.
f. To ensure the new values are recorded in the ICS-2000 memory, do not
turn off the ICS-2000 power for at least 1 minute after downloading.
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5 Service
To calibrate the cell on the ICS-2000 touch screen DIAGNOSTIC page:

a. Go to the DIAGNOSTIC page and touch Electric Conductivity Cell.
b. On the ELECTRIC CONDUCTIVITY CALIBRATION page (see Figure 5-17),
touch Run Offset Cal.
Figure 5-17. Electric Conductivity Calibration Page
c. When the offset calibration is complete, touch Run Slope Cal.

d. Touch the Cell Constant field and enter the value printed on the front of
the cell.
e. To ensure the new calibration values are recorded in the ICS-2000
memory, do not turn off the ICS-2000 power for at least 1 minute.
f. Record the new calibration values in the Chromeleon Wellness database.
To do this, open the Wellness Panel (see Section 5.1.1) and click Upload
under Update Wellness Database.
Doc. 031857-01 3/03 5-27

5.10 Replacing the Suppressor

Refer to the suppressor manual for guidance about when to replace a suppressor.
Suppressor manuals are included on the Dionex Reference Library CD-ROM
1. Refer to the suppressor quick start guide (shipped with the suppressor) for
instructions on preparing the suppressor before initial use and for additional
installation details.
3. Open the front door of the ICS-2000.
4. Disconnect the two eluent and the two regenerant lines from the suppressor.
5. To remove the suppressor from the component mounting panel, slide it up to
detach it from the mounting tabs on the panel and then pull it toward you.
6. Continue pulling the
suppressor out until the
yellow connector on the
cable inside the ICS-2000 is
outside the panel (see
Figure 5-18).
Yellow
7. Disconnect the suppressor Connector
cable (twist the ring on the
yellow connector and pull
the two connectors apart).
Figure 5-18. Removing the Suppressor
8. Connect the cable from the new suppressor to the ICS-2000 cable (align the
pins on the two connectors and push them together).
9. Orient the suppressor with the REGEN OUT fitting on top and the cables to the
right.
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5 Service
10. Push the cables into the opening in the component panel.
11. Align the top of the suppressor
with the guide line printed on the
component panel (see
Figure 5-19) and align the slots 1 Suppressor
Mounting Tabs
on the rear of the suppressor
with the tabs on the panel. 4 2 Suppressor Cable
Connector
12. Press the suppressor onto the
tabs and then slide it down until 3 Guideline for AES
3
it locks into place. Pull slightly
on the center of the suppressor to 1 4 Guideline for SRS
verify that it is securely fastened.
Note: Some suppressors require 2
more force to secure them onto 1
the tabs.
13. Connect the two eluent and two 1
regenerant lines to the new
suppressor.
14. Close the ICS-2000 front door.
Figure 5-19. Suppressor Guidelines and Mounting

Tabs on Component Panel
5.11 Replacing the Column Heater

1. Turn off the ICS-2000 power.
2. Open the front door of the ICS-2000.
3. Follow the steps below to remove the existing column heater:
a. Unscrew the two thumbscrews on the heater cover (they remain attached
to the cover).
b. Pull the heater cover straight out to remove it.
Doc. 031857-01 3/03 5-29

c. Unscrew the six

thumbscrews on the top
metal plate (see
Figure 5-20) and
remove the plate. Thumbscrews (6)
Figure 5-20. ICS-2000 Column Heater Cover Removed
d. Remove the columns from the column heater.

e. Pull the column heater straight toward you to remove it from the
component panel.
4. Before installing the new column heater, write down the two calibration
values (offset and slope) recorded on the back of the heater.
5. Align the connector on the back of the new column heater (P/N 058060) with
the connector on the component panel and push the column heater onto the
component panel.
6. Remove the heater cover and the metal plate on the new heater.
7. Install the columns in the new heater and replace the top metal plate and
heater cover.
8. Turn on the ICS-2000 power.
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5 Service
9. Enter the column heater calibration values in Chromeleon or on the ICS-2000

touch screen DIAGNOSTIC page as follows:
To enter the calibration values in Chromeleon:
a. Open the Wellness Panel (see Section 5.1.1) and click Calibration
Details.
b. Under Column Heater Calibration Values, enter the Column Heater
Offset and Column Heater Slope values recorded in Step 4.
c. In the field next to the Download button, verify that Current is selected
and then click Download to download the new calibration values to the
ICS-2000.
d. To ensure the new calibration values are recorded in the ICS-2000
memory, do not turn off the ICS-2000 power for at least 1 minute after
downloading the values.
To enter the calibration values on the ICS-2000 touch screen DIAGNOSTIC
page:
a. Go to the DIAGNOSTIC page and touch Column Heater Cal Values.
b. On the COLUMN HEATER CAL VALUES page (see Figure 5-21), enter the
Calibrated Offset and Calibrated Slope values recorded in Step 4.
Figure 5-21. Column Heater Cal Values Page
Doc. 031857-01 3/03 5-31

c. To ensure the calibration values are recorded in the ICS-2000 memory, do

not turn off the ICS-2000 power for at least 1 minute after entering the
values.
d. Record the calibration values in the Chromeleon Wellness database. To do
this, open the Wellness Panel (see Section 5.1.1) and click Upload under
Update Wellness Database.
5.12 Replacing the Column Heater Heat Exchanger

1. Turn off the ICS-2000
power.
2. Open the front door of the
ICS-2000.
Thumbscrews (6)
3. Unscrew the two Heat
Exchanger
thumbscrews on the column Screws (3)
heater cover (they remain
attached to the cover).
4. Pull the heater cover straight
out to remove it.
5. Unscrew the six
thumbscrews on the top
metal plate (see Figure 5-22)
and remove the plate.
6. Disconnect the heat
exchanger inlet line from
Port C on the injection
valve.
Figure 5-22. ICS-2000 Column Heater Cover Removed
7. Disconnect the heat exchanger outlet line from the guard column inlet.
8. Use an Allen wrench to remove the three screws from the heat exchanger
metal plate and remove the plate (with the tubing) from the heater.
9. Remove the plastic backing from the new heat exchanger (P/N 059979, with
0.25-mm (0.010-in) ID tubing; P/N 060943, with 0.125-mm (0.005-in) ID
5-32 Doc. 031857-01 3/03

5 Service
tubing) and press the heat exchanger onto the heater. Replace the screws
removed in Step 8.
10. Connect the new heat exchanger inlet line to Port C on the injection valve and
connect the outlet line to the guard column inlet.
11. Reinstall the top metal plate and the heater cover.
5.13 Replacing the Eluent Valve

1. Turn off the power to the ICS-2000.
3. To prevent an eluent leak during the procedure, disconnect the eluent line
from the reservoir cap. Or, plug the line on the left side of the valve with a
union (P/N 039056 and a plug (P/N 037268) after disconnecting the liquid
line from the valve (see Step 4).
4. Disconnect the two liquid
lines connected to the
Disconnect
eluent valve (see
Figure 5-23).
5. Unscrew and remove the
two screws that attach the
valve to the component
panel (see Figure 5-23).
Save the screws.
Remove
Figure 5-23. Eluent Valve
Doc. 031857-01 3/03 5-33

6. Pull the valve straight out

from the component panel and
begin pulling the attached
cable out of the opening in the
panel.
7. The cable connects to a cable
inside the ICS-2000. Continue
pulling until the connectors for
the two cables are outside the
panel (see Figure 5-24). Disconnect
Disconnect the cables. Cables
Figure 5-24. Eluent Valve Cable
8. Remove the mounting plate on

the old valve by unscrewing
and removing the two screws.
Save the screws.
Remove
9. Thread the cable from the new Screws
eluent valve through the
mounting plate.
10. Attach the mounting plate to
the new valve using the
screws removed in Step 8.
Figure 5-25. Removing the Valve Mounting Plate
11. Connect the cable from the new valve to the ICS-2000 cable. Feed the cables
back inside the ICS-2000.
12. Align the new valve on the component panel with the liquid ports facing up
and attach it with the two screws removed in Step 5. Reconnect the liquid
lines.
13. Turn on the power to the ICS-2000.
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5 Service
5.14 Replacing the Leak Sensor

1. Turn off the power to the ICS-
2000.
3. Loosen the screw on the front of
the leak sensor (see
Figure 5-26). Note: The screw
remains attached to the sensor.
Loosen
Leak
Sensor
Figure 5-26. Leak Sensor
4. Remove the leak sensor from

the component panel and pull
the cable out of the opening in
the panel.
5. The cable attached to the leak
sensor connects to a cable inside
the ICS-2000. Continue pulling
the cable until the connectors for
Disconnect
the two cables are outside of the
Cables
6. Disconnect the two cables.
Figure 5-27. Leak Sensor Cable
7. Connect the cable from the new leak sensor to the ICS-2000 cable.
8. Feed the cables back inside the ICS-2000. Align the leak sensor with the
component panel opening and fingertighten the screw.
9. Make sure the leak sensor does not touch the bottom of the drip tray.
Doc. 031857-01 3/03 5-35

5.15 Priming with Isopropyl Alcohol

NOTE Prime the pump heads with isopropyl alcohol only if the
two standard priming procedures described in
Section B.14 are unsuccessful.
1. Connect a 10-mL syringe (P/N 054578) filled with isopropyl alcohol (IPA) to
the port in the primary pump head (see Figure B-23).
2. Open the waste valve on the secondary pump head (see Figure B-23) by
turning the knob one-quarter to one-half turn counterclockwise.
3. Click Pump On on the Chromeleon Control Panel to turn on the pump motor.
4. Open the priming valve on the primary pump head by turning it one-quarter to
one-half turn counterclockwise.
5. Use the syringe to slowly push alcohol through the pump.
NOTE Be careful not to push any air trapped in the syringe

through the pump. Check the waste line from the
secondary pump head to verify that there are no air
bubbles.
6. Close the priming valve. Do not overtighten. Disconnect the syringe from
the priming valve.
7. Let the pump run for several minutes, to purge alcohol from the pump heads,
and then click Prime and flush the heads with the desired eluent.
Isopropyl alcohol may damage some columns. Be sure to thoroughly
rinse the alcohol from the pump, using the process described in
Step 7.
8. Close the waste valve. Do not overtighten.

9. Select the flow rate required for the analysis.
10. Click Pump Off to turn off the pump motor. The pump is now ready for
operation.
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5 Service
5.16 Changing Main Power Fuses

1. Turn off the main power switch.
HIGH VOLTAGEDisconnect the main power cord from its source and
also from the rear panel of the ICS-2000.
HAUTE TENSIONDbranchez le cordon d'alimentation principal de

sa source et du panneau arrire du ICS-2000.
HOCHSPANNUNGZiehen Sie das Netzkabel aus der Steckdose und

der Netzbuchse auf der Rckseite des ICS-2000.
2. The fuse holder is part of the main power receptacle (see Figure 5-28) on the
ICS-2000 rear panel. To remove the fuse holder, squeeze the tab on the top of
the holder to release it and pull the holder straight out of its compartment.
3. Replace the two fuses in the holder with new IEC 127 fast-blow fuses rated
3.15 amps (P/N 954745). Dionex recommends always replacing both fuses.
4. Reinsert the fuse holder into its compartment and push in until the tab clicks
in place.
5. Reconnect the main power cord and turn on the power.
Figure 5-28. Main Power Fuse Holder
Doc. 031857-01 3/03 5-37

5.17 Replacing the Eluent Generator Cartridge

the ICS-2000 touch screen HOME page.
2. Disconnect the EGC cable from the EGC-1 connector (blue) on the ICS-2000
top cover.
3. Disconnect the CR-TC cable from the CR-TC connector (black).
The EGC contains either KOH, a corrosive base, or MSA, a corrosive

acid. Wear eye protection and gloves when handling the EGC.
L'EGC contient soit du KOH, une base corrosive, soit du

mthanesulfonique (AMS), un acide corrosive. Portez donc des
lunettes protectrices et des gants en travaillant avec l'EGC.
Der EGC ist mit KOH, einer tzenden Lauge, oder MSA, einer tzenden
Sure befllt. Tragen Sie daher eine Schutzbrille und Handschuhe.
4. Remove the EGC VENT Luer Adapter

line (see Figure 5-29) Luer Lock
from the EGC by
unscrewing the luer lock
from the luer adapter.
EGC
If necessary, use a wrench Vent
to hold the luer adapter in Line
place while unscrewing

the vent line.
Figure 5-29. EGC Vent Line and Luer Fitting
5. Install the luer cap (P/N 053981), provided with the EGC, onto the luer
adapter. This prevents leaks from the vent opening when you turn over the
EGC (see Step 7).
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5 Service
6. Lift the EluGen cartridge straight up and out of the cartridge holder.
7. Turn the cartridge upside down and set it in the EGC service position on top
of the ICS-2000 (see Figure 5-30 and Figure 5-31).
EGC Service
Position
Figure 5-30. EGC Service Position
Figure 5-31. EGC In the Service Position
Doc. 031857-01 3/03 5-39

8. Disconnect the EGC IN and

EGC OUT lines from the EGC IN
EGC OUT
INLET and OUTLET fittings INLET
on the EluGen cartridge (see Port
OUTLET
Figure 5-32). Port
9. Follow the instructions in the
EGC manual (Document No.
031908), provided on the
Dionex Reference Library
CD-ROM (P/N 053891), to
prepare an expended EGC
for disposal or to store a
partially used EGC for later
use.
Figure 5-32. Disconnect the Inlet and Outlet Port Lines
10. Remove the new EGC from the shipping box.

11. Orient the EGC with the fittings facing up and set it in the EGC service
position.
12. Remove the plugs from the EGC INLET and OUTLET fittings (see
Figure 5-33).
Fitting Plugs
Inlet
Outlet
Figure 5-33. EGC Fitting Plugs
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5 Service
13. Connect EGC IN to the EGC INLET port (see Figure 5-34).
INLET Port
EGC IN
Figure 5-34. Connecting the EGC Inlet Port
14. Locate the yellow 0.5 mL/min, 7 MPa (1000 psi) pressure restrictor coil
(P/N 053765) in the ICS-2000 Ship Kit (P/N 057905). Connect one end of this
coil to the EGC OUTLET port (see Figure 14). Leave the other end of the coil
unconnected.
NOTE The pressure restrictor connection is temporary. It is

used only during the EGC conditioning procedure.
Pressure
Restrictor
Coil
OUTLET
Port
Figure 5-35. EGC Outlet Connection for

Conditioning the EGC
Doc. 031857-01 3/03 5-41

15. Turn the EGC cartridge over, with the fittings facing down.Shake the EGC
vigorously and tap it with the palm of your hand 10 to 15 times. Check
that all trapped bubbles are dislodged.


16. Slide the EGC down into the holder

until it stops.
NOTE To avoid crimping the lines

inside the holder, do not
twist the cartridge before
you slide it into the holder.
The lines are designed to
coil inside the holder.
Figure 5-36. Installing the EGC in the Holder
5-42 Doc. 031857-01 3/03

5 Service
17. Orient the cartridges blue 4-

pin electrical cable connector
as shown in Figure 5-37. Push
it onto the EGC-1 connector on
the ICS-2000. Twist the ring on
the cable connector fingertight
to secure it.
Figure 5-37. Connecting the EGC Cable
18. Remove the plug from the EGC vent opening and connect the EGC VENT line.

The EGC must be conditioned before initial use. This requires directing the
pressure restrictor coil, connected to the EGC outlet to waste, and then generating
50 mM of eluent (either KOH or MSA) at 1.0 mL/min for 10 minutes. Follow the
steps below:
1. Set a temporary waste container, such as a beaker, on top of the ICS-2000 and
direct the yellow backpressure coil from the EGC OUTLET port to the
container.
2. From the Chromeleon Control Panel or the ICS-2000 touch screen HOME
page, set the pump flow rate to 1.00 mL/min and set the EGC concentration
to 50 mM.
3. Verify that the suppressor and CR-TC are off.
To avoid damaging the suppressor and CR-TC, always turn off the
suppressor and CR-TC before conditioning the EGC. The pump flow is
on during conditioning, however, no flow reaches the suppressor or
CR-TC.
Doc. 031857-01 3/03 5-43

NOTE If the Automatically turn on with pump option is selected

on the ICS-2000 touch screen SUPPRESSOR page (see
Section C.9) and/or ELUENT GENERATOR page (see
Section C.8), disable the option(s) to allow you to turn
on the pump, but not the suppressor and CR-TC.

5. Run at the selected settings (1.0 mL/min at 50 mM) for 30 minutes.
6. Turn off the pump.
7. Disconnect the EGC cable
8. Remove the backpressure tubing from the waste container and remove the
waste container.
9. Lift the EGC out of the
holder, turn it over, and set it EGC IN
EGC OUT
in the service position. INLET
Port
10. Disconnect the pressure OUTLET
restrictor coil from the EGC Port
OUTLET port.
11. Connect the EGC OUT line

from the holder to the
OUTLET port (see
Figure 5-38).
Figure 5-38. EGC Inlet and Outlet Connections
12. Turn over the EGC (fittings facing down). Check for bubbles. If necessary,
shake and tap the EGC to remove bubbles.
13. Reinstall the EGC in the holder.
14. Reconnect the EGC cable.
15. Reconnect the CR-TC cable.
16. Record the serial number of the new cartridge in Chromeleon:
5-44 Doc. 031857-01 3/03

5 Service
a. Open the Server Configuration program and double-click the ICS-2000

system icon. The properties dialog box for the ICS-2000 appears.
b. Click the Eluent Generator tab (see Figure 5-39).
c. Enter the EluGen cartridge serial number and click OK.
1234567890
Figure 5-39. Eluent Generator Configuration Properties Example
NOTE You can also enter the cartridge serial number from the
Chromeleon Control Panel by clicking the EG Settings
button.
17. If you disabled the Automatically turn on with pump option in Step 3, re-enable
the option.
Doc. 031857-01 3/03 5-45

5.18 Replacing the CR-TC

2. Follow the instructions in Section 5.17, Steps 2 through 8 to disconnect the
EGC and CR-TC cables, cap the EGC vent opening, remove the EGC from
the holder, and disconnect the inlet and outlet tubing.
3. Disconnect the line labeled TO INJ VALVE IN - P from the injection valve and
disconnect the line labeled SRS/AES REGEN OUT from the REGEN OUT port
on the suppressor.
4. Lift the holder up and tilt it to Disconnect liquid
view the bottom of the holder. lines from 4 ports
5. Brace the holder against the

back corner of the ICS-2000.
6. Grasp the top of the CR-TC and
lift up to disconnect it from the
holder.
7. Disconnect the liquid lines from
the four ports on the CR-TC
(see Figure 5-40).
Figure 5-40. Disconnecting CR-TC Liquid Lines
8. Remove the CR-TC from the holder.

9. Remove the plugs from the ports on the new CR-TC. Reconnect the liquid
lines that were disconnected in Step 7 to the corresponding ports on the new
CR-TC.
5-46 Doc. 031857-01 3/03

5 Service
10. Check that none of the

lines are caught under
the CR-TC and then
push the CR-TC onto
the metal stud inside the
EGC holder. Push down
until the CR-TC snaps
into place (see
Figure 5-41).
Figure 5-41. CR-TC Installed in Holder
11. Feed the CR-TC cable

through the slot on the
side of the EGC holder
(see Figure 5-42).
12. Turn the EGC holder
right-side up.
CR-TC
Cable
Figure 5-42. CR-TC Cable
13. Reconnect the EGC IN and EGC OUT lines to the EGC inlet and outlet
ports.
14. Turn over the EGC (fittings facing down). Check for bubbles; if
necessary, shake and tap the EGC to remove bubbles.
Doc. 031857-01 3/03 5-47

16. Remove the cap on the luer adapter by twisting. Save the cap.
17. Twist the luer lock and EGC VENT line into the luer adapter.
18. Do not connect the EGC cable until after hydrating the CR-TC.
Hydrating the CR-TC
The CR-TC must be hydrated before initial use by running deionized

water through it for 10 minutes, while bypassing the columns and
suppressor.
1. Locate the 10-32 to 1/4-28 coupler (P/N 042806) in the ICS-2000
2. Connect the coupler between the line labeled TO INJ VALVE IN - P and
the line labeled SRS/AES REGEN OUT.
3. Verify that the current to the suppressor is turned off.
To avoid damaging the suppressor, always turn off the suppressor

before hydrating the CR-TC. The pump flow is on during conditioning,
however, no flow reaches the suppressor.
NOTE If the Automatically turn on with pump option is selected

on the ICS-2000 touch screen SUPPRESSOR page (see
Section C.9), disable the option to allow you to turn on
the pump, but not the suppressor.
4. Turn on the pump and set the flow to the rate recommended for your
application. Pump deionized water through the CR-TC for at least
10 minutes.
5. Turn off the pump and disconnect the coupler.
6. After hydrating the CR-TC,
Reconnect the line labeled TO INJ VALVE IN - P to port 2 on the
injection valve.
Reconnect the line labeled TO SRS/AES REGEN OUT to the
REGEN OUT port on the suppressor.
7. Reconnect the CR-TC and EGC cables.

8. If you disabled the Automatically turn on with pump option in Step 3,
re-enable the option.
5-48 Doc. 031857-01 3/03

5 Service
5.19 Replacing the EGC Holder and Degas Assembly

1. Turn off the power to the ICS-2000.
2. Disconnect the EGC holder liquid lines:
Disconnect the line labeled TO SRS/AES REGEN OUT from the REGEN
OUT port on the suppressor.
Disconnect the line labeled TO INJ VALVE IN - P from port 2 on the
injection valve.
Disconnect the line labeled TO PUMP/DAMPER from the pump damper.
Disconnect the line labeled WASTE-GAS SEPARATOR from the gas
separator waste tube assembly installed on the waste container.
3. Disconnect the EGC cable from the EGC-1 connector (blue) on the ICS-2000
top cover.
4. Disconnect the CR-TC cable from the CR-TC connector (black).

acid. Wear protective eye wear and gloves when handling the EGC.

Doc. 031857-01 3/03 5-49

5. Remove the EGC VENT Luer Adapter

line (see Figure 5-43) Luer Lock
from the EGC by
unscrewing the luer lock
from the luer adapter.
EGC
If necessary, use a wrench Vent
to hold the luer adapter in Line
place while unscrewing

the vent line.
Figure 5-43. EGC Vent Line and Luer Fitting
6. Install the luer cap (P/N 053981), provided with the EGC, onto the luer
adapter. This prevents leaks from the vent opening when you turn over the
EGC (see Step 7).
7. Lift the EluGen cartridge straight up and out of the EGC holder.
8. Turn the cartridge upside down and set it in the EGC service position on top
of the ICS-2000 (see Figure 5-30 and Figure 5-31).
9. Disconnect the EGC IN and EGC OUT lines from the INLET and OUTLET ports
on the cartridge.
10. Lift the holder out of the top
cover and pull the liquid lines
through the tubing chase (see
Figure 5-44) to remove them
from the ICS-2000.
Tubing Chase
Figure 5-44. Top Cover Tubing Chase
5-50 Doc. 031857-01 3/03

5 Service
11. Turn the holder upside down to view the CR-TC.

12. Grasp the top of the CR-TC and Disconnect liquid
lift up to disconnect it from the lines from 4 ports
holder.
13. Disconnect the liquid lines from
the four ports on the CR-TC
(see Figure 5-40).
Figure 5-45. Disconnecting CR-TC Liquid Lines
14. Turn the new holder upside down

(see Figure 5-46) and connect the
liquid lines to the CR-TC. Match Unions
the color coded labels on the EGC
holder lines to the color coded
labels for the CR-TC ports.
NOTE To help retain the

fittings and ferrules on
the lines, remove the
union from each line
just before connecting
the line to a port.
Metal stud for mounting the CR-TC
Figure 5-46. EGC Holder (upside down)
Doc. 031857-01 3/03 5-51

15. Check that none of the lines are

caught under the CR-TC and
then push the CR-TC onto the
metal stud inside the EGC
holder. Push down until the
CR-TC snaps in place (see
Figure 5-47).
Figure 5-47. CR-TC Installed in Holder
16. Feed the CR-TC cable through the

slot on the side of the EGC holder
(see Figure 5-48).
17. Turn the EGC holder right side up
and set it on top of the ICS-2000.
18. Feed the four liquid lines from the
bottom of the holder through the CR-TC
tubing chase to the ICS-2000 Cable
front component panel.
Figure 5-48. CR-TC Cable
19. Connect the lines to their respective locations.

Connect the line labeled TO SRS/AES REGEN OUT to the REGEN OUT port.
Connect the line labeled TO INJ VALVE IN - P to port 2 on the injection
valve.
Connect the line labeled TO PUMP/DAMPER to the pump damper.
5-52 Doc. 031857-01 3/03

5 Service
20. Connect the WASTE-GAS SEPARATOR to the gas separator waste tube.
21. Remove the union from the
EGC OUT and EGC IN lines EGC IN
EGC OUT
inside the holder and connect INLET
the lines to the OUTLET and Port
OUTLET
INLET ports on the cartridge. Port
Figure 5-49. EGC Inlet and Outlet Connections
22. Turn over the EGC (fittings facing down). Check for any bubbles, and if
necessary, shake and tap the EGC to remove them.
24. Reconnect the EGC and CR-TC cables.
25. Remove the cap from the luer adapter on the EGC vent opening and re-
connect the EGC VENT line.
Doc. 031857-01 3/03 5-53

5-54 Doc. 031857-01 3/03

A Specifications
A.1 Electrical
Main Power 85 to 265 Vac, 47 to 63 Hz. The ICS-2000 power supply is auto-
sensing and requires no voltage adjustment
Fuses Two 3.15 amp fast-blow IEC 127 fuses (P/N 954745)
A.2 Physical
Dimensions Height: 56.1 cm (22.1 in)

(without Width: 22.4 cm (8.8 in)
reservoir or Depth: 53.3 cm (21.0 in)
EluGen
cartridge)
Weight 30 kg (66 lb)
Decibel Level < 52 db (at A WEIGHTING setting)
A.3 Environmental
Operating 4 C to 40 C (40 F to 104 F)

Temperature
Humidity 5 to 95% relative humidity, noncondensing
Operating 35 MPa (5000 psi) maximum liquid path (tubing, valve, columns,
Pressure etc.)
Doc. 031857-01 3/03 A-1

A.4 Front Panel
Power LED On when power is present; off when no power is present
LCD Touch VGA (320 x 240 pixels) liquid crystal display with touch screen,
Screen which provides:
Local control of ICS-2000 components: pump, detector,
suppressor, injection valve, eluent generator, CR-TC, column
heater, vacuum degas, TTLs, and relays
Display of conductivity data plot and operating status
Local control of calibration and diagnostic functions
A.5 Pump
Type Dual-piston (in series), variable speed, 100 L per revolution
Flow Rate Settable range: 0.00 to 5.00 mL/min (without eluent generator)
0.10 to 3.00 mL/min (with eluent generator), in 0.01 increments
Optimal Operational Range: 0.4 to 2.0 mL/min
Flow Accuracy <1% of set value within the optimal operational range
Flow Precision <0.2%
Operating 35 MPa (5000 psi), maximum

Pressure
High Pressure 0.7 to 34.4 MPa (100 to 5000 psi) (without eluent generator)
Limit 2.1 to 20.6 MPa (300 to 3000 psi) (with eluent generator)
Low Pressure 0.0 to 33.7 MPa (0 to 4900 psi) (without eluent generator)
Limit 1.4 to 19.9 MPa (200 to 2900 psi) (with eluent generator)
Delay Volume <800 L
Pressure Ripple <1% at 13.8 MPa (2000 psi) and 1.0 mL/min
A-2 Doc. 031857-01 3/03

A Specifications
A.6 Detector
Range 0 to 3200 S (digital output)

0 to 3000 S (analog output)
Temperature 1.7% per C

Compensation
Cell Drive 8 kH square wave
Linearity Correlation >0.999

%RSD <5% to 800 S
A.7 Conductivity Cell with Heat Exchanger
Cell Body PEEK
Electrodes Passivated 316 stainless steel
Active Volume 1.0 L
Operating 30 to 55 C (86 to 130 F); must be at least 7 C above the ambient

Temperature temperature
Maximum 2 MPa (300 psi)

Pressure
A.8 Injection Valve
Injection Valve Two-position, six-port, electrically-activated valve with PEEK

wetted components
A.9 Vacuum Degas Assembly
Channel Single-channel degas channel with degas membranes
Pump Dual-stage diaphragm vacuum pump
Materials Wetted materials, PEEK, PTFE
Doc. 031857-01 3/03 A-3

A.10 Column Heater
Operating 30 to 60 C (86 to 140 F); must be at least 5 C above the ambient

Temperature temperature
A.11 Eluent Generator
Concentration For flow rates up to 1.0 mL/min: 0.1 to 100 mM

Range For flow rates over 1.0 mL/min: maximum concentration =
100 mM/flow rate
A-4 Doc. 031857-01 3/03

B Installation
This chapter provides instructions for the initial installation of the ICS-2000 Ion
Chromatography System.
NOTE These installation instructions are also shipped with the

ICS-2000 as a stand-alone printed manual (Document
No. 031858).
NOTE The order of the steps is important. It is especially

important to install Chromeleon before connecting the
USB cable and turning on the ICS-2000 power.
B.1 Facility Requirements

Make sure the ICS-2000 installation site meets the power and environmental
specifications listed in Appendix A.
Provide a sturdy workbench for the ICS-2000 of a height that ensures
convenient access to the interior.
Allow at least 15 cm (6 in) behind the ICS-2000 for power connections and
ventilation. For optimal performance, install the ICS-2000 in a draft-free
location, out of the path of air conditioning and heating vents.
(Optional) Provide a clean gas source regulated to between 0.55 and
0.83 MPa (80 and 120 psi) for pressurization of the eluent reservoir.
Use ASTM filtered, Type I (18-megohm) deionized water when preparing
eluent and regenerant.
Doc. 031857-01 3/03 B-1

B.2 Unpacking the ICS-2000 System

1. After removing the ICS-2000 from the shipping box and removing the top
layer of foam, remove the next layer of foam (see Figure B-1).
EGC Holder
(upside down)
Eluent
Bottle
Figure B-1. Unpacking the ICS-2000
2. Set the eluent bottle on top of the

ICS-2000 (see Figure B-2). EGC Holder
(right-side up)
3. TURN OVER THE EGC
HOLDER, and set it on top of the
ICS-2000.
Figure B-2. ICS-2000 After Installing

Eluent Bottle and EGC Holders
B-2 Doc. 031857-01 3/03

Unpacking the ICS-2000 System
4. Remove the next layer of foam and remove the Ship Kit box (see Figure B-3).
Ship
Kit
Cutouts
for lifting
Figure B-3. ICS-2000 with Ship Kit
5. The bottom foam layer has two cutouts on either side of the ICS-2000
module; use these as hand holds when lifting the module (see Figure B-3).
6. Lift the ICS-2000 out of the bottom layer of foam and set it on a workbench.
Inspect the ICS-2000 for any shipping damage.
Two or more persons should lift the ICS-2000, which weighs 30 kg
(66 lb). Lift the ICS-2000 only from each side of the cabinet bottom.
Lifting from the front door will damage the door hinges.
Au moins deux personnes peuvent soulever le ICS-2000: il pse 30 kg

(66 lb). Ne soulevez le ICS-2000 que par chaque ct du fond de
l'armoire. Son soulvement par la porte du panneau avant
endommagera les charnires de la porte.
Der ICS-2000 wiegt ber 20 kg. Daher sollte das Gert nur von zwei
oder mehr Personen angehoben werden. Greifen Sie dazu an beiden
Seiten unter das Gert. Heben Sie den Autosampler nicht an der
Vordertr an, da dadurch die Trangeln beschdigt werden knnten.
Doc. 031857-01 3/03 B-3

B.2.1 Unpacking the Computer (North America only)
NOTE These instructions assume that Chromeleon

software and the software license were installed on
the computer before shipping.
1. Remove the central processing unit (CPU), keyboard, mouse, and all
documentation from the computer box and place these items on a
workbench.
2. Remove the monitor from its box and place it on the workbench.
3. Follow the instructions in the computer installation guide to hook up
the monitor, mouse, keyboard, and CPU.
4. Go on to Section B.4, Installing the Chromeleon Software License..
B.2.2 Unpacking the Computer (outside North America)

1. Refer to Installing the Chromeleon IC System (Document No.
031883) to verify that the computer being used meets Chromeleon
specifications. The manual is on the Dionex Reference Library CD-
ROM (P/N 053891).
2. Remove the central processing unit (CPU), keyboard, mouse, and all
documentation from the computer box and place these items on a
workbench.
3. Remove the monitor from its box and place it on the workbench.
4. Follow the instructions in the computer installation guide to hook up
the monitor, mouse, keyboard, and CPU.
5. If Chromeleon is not installed on the computer, go on to Section B.3,
Installing Chromeleon.
6. If Chromeleon is already installed on the computer, go on to
Section B.4, Installing the Chromeleon Software License.
B-4 Doc. 031857-01 3/03

Installing Chromeleon
B.3 Installing Chromeleon

NOTES
Windows 2000 or Windows XP is required for controlling the ICS-2000
with Chromeleon. Chromeleon version 6.5 SP2 or later is required.
To install Chromeleon, you must log onto Windows 2000 or XP with
administrator privileges. Administrator privileges are not required to
run Chromeleon.
1. Turn on the computer power.
2. Follow the Windows setup steps as they appear on the screen.
3. Verify that the monitor display is set to a minimum of 1024 x 768 with 16 bit
color.
4. Insert the Chromeleon CD-ROM into the CD-ROM drive.
5. The Chromeleon Setup menu appears.
6. If the Setup menu does not appear automatically, go to the Autorun folder on
the Chromeleon CD-ROM and double-click autorun.exe.
7. Select Launch Chromeleon Setup.
8. Setup now guides you through the installation procedure; follow the on-
screen instructions as they appear.
9. When prompted, select whether to add the Chromeleon Server Monitor to the
Startup group. If you select yes, the Server Monitor starts automatically when
the computer is started, and the program icon appears in the taskbar.
10. When complete, go on to Section B.4, Installing the Chromeleon Software
License.
Doc. 031857-01 3/03 B-5

IMPORTANT
Installing DX-LAN Devices
If you will also be installing a module that requires a DX-LAN interface
connection, verify that the following steps are completed before continuing:
1. If it is not already installed, install the DX-LAN card in the module. Refer
to the operators manual for the module for installation instructions.
2. Install the DX-LAN card in the computer.
3. Connect the module to the DX-LAN.
4. Install the DX-LAN card driver.
Instructions for Steps 2 through 4 are in Installing the Chromeleon IC System
(Document No. 031883).
B.4 Installing the Chromeleon Software License

For the Chromeleon computer to control the ICS-2000, a valid software license
must be installed. To install the license, you first install a dongle on the computer
and then enter a license Key Code in Chromeleon. (A dongle is an adapter that
is connected to the parallel PC interface or USB port. The dongle stores the serial
number of a Chromeleon computer.)
NOTE If the software license is managed via a License

Server, a dongle is not required.
1. Plug the dongle into the appropriate port on the computer (either the parallel
or USB port, depending on the type of dongle). Tighten the connector screws
on a parallel port dongle.
2. If it is not already running, start the Chromeleon Server Monitor (select
Start>Programs>Chromeleon>Server Monitor). The Server Monitor
window opens.
B-6 Doc. 031857-01 3/03

Installing the Chromeleon Software License
3. Check the server status:

If Chromeleon Server is running idle is displayed, the license Key Code
was entered before shipping the computer, and you can omit the
remaining steps in this section. Click Close and go on to Section B.5.
If Chromeleon Server is running idle (Evaluation Mode) is displayed
(see Figure B-4), the license Key Code has not yet been entered. If this is
the case, go on to Step 4.
Figure B-4. Server Evaluation Mode
4. Open Chromeleon (select Start>Programs>Chromeleon>Chromeleon).
Doc. 031857-01 3/03 B-7

5. Select File>Preferences to open the Preferences dialog box (see Figure B-5).
Select the License tab and click Dongle. Enter the Key Code exactly as it
appears on the Chromeleon Software License key code sheet. Click OK.
Figure B-5. Preferences: License Page
6. Check the Server Monitor status. It should now display Chromeleon Server
is running idle. (see Figure B-6).
Figure B-6. Server Running
7. Click Close to close the Server Monitor window.

8. Go on to Section B.5.
B-8 Doc. 031857-01 3/03

Connecting the ICS-2000 to the Chromeleon PC
B.5 Connecting the ICS-2000 to the Chromeleon PC

The ICS-2000 rear panel provides a USB receptacle for connecting the ICS-2000
to a USB port on the Chromeleon PC. The rear panel also provides two USB ports
for connecting other Dionex USB-compliant modules to the system.
Do not turn on the power to the ICS-2000 or other USB module(s) until
after you connect the USB cable.
Before connecting the USB cable, verify that Chromeleon is installed.

If not, Windows will be unable to identify the new USB device when
the power is turned on. See Section B.3 to install Chromeleon.
B.5.1 Connecting the ICS-2000 to the PC

1. Locate the USB cable (P/N 960779) in the ICS-2000 Ship Kit
(P/N 057905).
2. Plug the cables A connector into a USB port on the Chromeleon
PC and plug the cables B connector into the USB receptacle
(labeled FROM PC) on the ICS-2000 rear panel (see Figure B-7).
B
ICS-2000
USB Cable A Chromeleon PC
Plug the USB cables B Plug the USB cables A

connector into the FROM PC connector into the USB
receptacle on the ICS-2000. port on the Chromeleon PC.
FROM PC USB receptacle

on the ICS-2000 rear panel
Figure B-7. Example Connections: One ICS-2000 Connected to the Computer
Doc. 031857-01 3/03 B-9

B.5.2 Connecting Additional USB Devices

The ICS-2000 provides two USB ports for connecting additional Dionex
USB-compliant modules to the system.
To connect an additional USB module, plug the A connector on a USB
cable into an A port (labeled TO MODULE) on the ICS-2000 rear panel
and plug the cables B connector into the USB receptacle on the USB
module (see Figure B-8).
Figure B-8. Example Connections: Two Dionex USB Modules Connected to the ICS-2000
NOTE If the number of USB devices in the system exceeds the

number of available USB ports, connect the devices to
the system with a USB-compliant, full-speed external
hub. One or more hubs is also required if the ICS-2000
or other USB device is more than 5 meters (16 ft) from
the PC. Refer to the manual provided by the hub vendor
for complete installation instructions.
The USB standard limits the USB cable length to 5 meters (16 ft). Each
USB device can be separated from the PC by no more than five hubs.
Thus, each USB device can be located no more than 30 meters
(32 yds) from the PC.
B-10 Doc. 031857-01 3/03

Connecting the Power Cord
B.6 Connecting the Power Cord

Connect the power cord (IEC 320 C13) (ordered separately) from the main power
receptacle on the rear panel to a grounded power source. The ICS-2000 power
supply is auto-sensing, so no adjustment is required to select the line voltage.
SHOCK HAZARDTo avoid electrical shock, use a grounded
receptacle. Do not operate the ICS-2000 or connect it to AC power
mains without an earthed ground connection.
The power supply cord is used as the main disconnect device. Make
sure the socket-outlet is located near the ICS-2000 and is easily
accessible.
Operation at AC input levels outside of the specified operating voltage

range may damage the ICS-2000.
DANGER D'LECTROCUTIONPour viter toute lectrocution, il faut

utiliser une prise de courant avec prise de terre. Ne l'utilisez pas et ne
le branchez pas au secteur C.A. sans utiliser de branchement mis la
terre.
Le cordon d'alimentation principal est utilis comme dispositif
principal de dbranchement. Veillez ce que la prise de base soit
situe/installe prs du module et facilement accessible.
STROMSCHLAGGEFAHRZur Vermeidung von elektrischen

Schlgen ist eine geerdete Steckdose zu verwenden. Das Gert darf
nicht ohne Erdung betrieben bzw. an Wechselstrom angeschlossen
werden.
Das Netzkabel ist das wichtigste Mittel zur Stromunterbrechung.
Stellen Sie sicher, da sich die Steckdose nahe am Gert befindet und
leicht zugnglich ist.
Doc. 031857-01 3/03 B-11

B.7 Turning On the ICS-2000 Power
Before turning on the ICS-2000 power, verify that Chromeleon

software is installed. See Section B.3 for installation instructions. If
Chromeleon is not installed first, Windows will be unable to identify
the new USB device.
1. If it is not already on, turn

on the computer power and
log onto Windows 2000 or
Windows XP as an
administrator. Power
Switch
2. Press the power switch on
the ICS-2000 rear panel (see
Figure B-9) to turn on the
power.
Figure B-9. ICS-2000 Rear Panel
3. Windows automatically detects the new USB device. A message flashes on

the screen to inform you that new hardware was found.
B-12 Doc. 031857-01 3/03

Setting Up Chromeleon
B.8 Setting Up Chromeleon

NOTE This section provides brief instructions for setting up
Chromeleon. For details about any of these steps, refer
to the Chromeleon users guide or online Help.
B.8.1 Assigning the ICS-2000 to a Timebase

1. If the Chromeleon Server is not running (the icon on the taskbar is
crossed out in red ), start the Server by right-clicking the icon
and selecting Start Server. When the server starts, the icon changes
to gray .
2. Open the Server Configuration program (select

Start>Programs>Chromeleon>Server Configuration).
3. The Unassigned USB Devices dialog box appears (see Figure B-10).
Figure B-10. ICS-2000 Unassigned to Timebase
Doc. 031857-01 3/03 B-13

4. Click the New button.

5. The Timebase box displays a default name (the Server Configuration
name). You can use the provided name or type a new one (for
example, ICS-2000).
6. Press the Enter key.
7. In the Unassigned USB Devices box, select the ICS-2000 and then
click the Assign button. The ICS-2000 is now assigned to the
timebase (see Figure B-11). If you are installing more than one ICS-
2000, you can verify the serial numbers for each by checking the label
on the component panel. The serial number is also shown on the
INFORMATION touch screen page.
8. Repeat Step 7 if you are adding additional USB devices to this

timebase.
Figure B-11. ICS-2000 Assigned to a Timebase
B-14 Doc. 031857-01 3/03

9. Click OK to close the dialog box. The Server Configuration program

window appears.
10. Click the + icon next to the server name to expand the folder. The
timebase you created is displayed (see Figure B-12).
Figure B-12. Server Configuration with ICS-2000 Timebase
11. To verify that the ICS-2000 is correctly connected to the timebase,

double-click its name under the timebase. Click Yes if the following
message appears: Communication to the device will be stoppedDo
you want to continue?
Doc. 031857-01 3/03 B-15

12. The ICS-2000 System dialog box opens (see Figure B-13). The
General page shows the Device Name (Pump_ECD), the Mode
(Live), and the Module Serial No.
Figure B-13. ICS-2000 System Properties
13. Close the dialog box and then save the configuration (select
File>Save Installation).
14. If you are going to add one or more DX-LAN devices to the timebase,
go on to Section B.8.2. Otherwise, exit the Server Configuration
program and then go on to Section B.9.
B-16 Doc. 031857-01 3/03

B.8.2 Assigning DX-LAN Devices to the Timebase (Optional)

Follow the instructions in this section if you are adding one or more
devices to the timebase that are connected to the PC through a DX-LAN
interface (not through USB connections).
1. Follow the instructions in Installing the Chromeleon IC System
(Document No. 031883) to add the DX-LAN card to the server
configuration as a sharable device.
2. Select the timebase that was created for the ICS-2000 (see
Figure B-14); then, click the Add device icon on the toolbar (or
select Edit>Add Device).
Figure B-14. Example: ICS-2000 Timebase
The Add device to timebase dialog box appears.
Doc. 031857-01 3/03 B-17

3. If it is not already selected, select Dionex under Manufacturers and

then select the device from the Devices list.
Figure B-15. Add Device to Timebase Dialog Box
4. Click OK. A configuration properties dialog box for the device

appears. Figure B-16 shows an example of the properties for an AS50
Autosampler.
Figure B-16. AS50 Configuration Properties
B-18 Doc. 031857-01 3/03

5. On the General tab page, clear the Demo Mode check box if it is
currently selected, and then select the DX-LAN Device ID number.
Note: Devices display their DX-LAN ID numbers when their power
is turned on.
6. Click OK to close the dialog box.
7. Save the configuration (select File>Save Installation).
8. Exit the Server Configuration program.
9. Go on to Section B.9
Doc. 031857-01 3/03 B-19

B.9 Installing and Plumbing the Columns and Suppressor

NOTE This section provides brief installation and plumbing
instructions for the columns and suppressor. Before
beginning the installation, refer to the column and
suppressor manuals for detailed start-up and
installation instructions. The manuals are provided on
the Dionex Reference Library CD-ROM (P/N 053891),
which is located in the ICS-2000 Ship Kit (P/N 057905).
Before beginning:
Remove the guard column, separator column, and suppressor from their
boxes.
Remove the fitting plugs from the ends of each column and from all ports on
the suppressor.
Discard any tubing temporarily connecting the suppressor ports.
B.9.1 Column Heater Setup

1. Cut off the two
shipping ties from
the column heater Thumbscrew (2)
and remove them
(see Figure B-17).
2. Loosen the two Shipping Tie (2)
thumbscrews on
the heater cover
(they remain
attached to the
cover).
3. Pull the heater
cover straight out
to remove it.
Figure B-17. ICS-2000 Column Heater Setup
B-20 Doc. 031857-01 3/03

Installing and Plumbing the Columns and Suppressor
4. Unscrew the six

thumbscrews on the
top metal plate (see
Figure B-18) and
remove the plate. Thumbscrew (6)
5. Go on to
Section B.9.2.
Figure B-18. ICS-2000 Column Heater Cover Removed
B.9.2 Installing the Columns

1. Remove the union connecting GUARD IN and GUARD OUT.
2. Connect GUARD IN to the guard column inlet. Check the arrow on the
column label; it should point down (flow away from the injection
valve).
3. Connect GUARD OUT to the guard column outlet.
4. Push the guard column onto the back column clip.
5. Remove the union connecting COL IN and COL OUT and
6. Connect COL IN to the separator column inlet. Connect COL OUT to
the separator column outlet. Check the arrow on the column label. It
should point up (flow toward the cell).
7. Push the separator column onto the front column clips.
8. Replace the top metal plate on the column heater.
Doc. 031857-01 3/03 B-21

B.9.3 Installing the Suppressor

1. Locate the suppressor
mounting tabs on the
component panel (see
Figure B-19). Reach 1 Suppressor
Mounting Tabs
into the opening
between the tabs and 4 2 Suppressor Cable
pull the yellow Connector
connector and attached 3 Guideline for AES
cable slightly out of the 3
opening. 4 Guideline for SRS
1
2. Connect this cable to the
cable from the 2
suppressor (align the 1
pins on the two
connectors and push 1
them together).
Figure B-19. Suppressor Mounting Tabs

and Guidelines
3. Orient the suppressor with the REGEN OUT fitting on top and the
cable to the right.
4. Feed the cable into the opening in the component panel.
5. Align the top of the suppressor with the guideline printed on the
component panel (see Figure B-19) and align the slots on the rear of
the suppressor with the tabs on the panel.
B-22 Doc. 031857-01 3/03

Installing and Plumbing the Columns and Suppressor
6. Press the suppressor onto the tabs

and then slide it down to lock it in
place. Pull slightly on the center of
the suppressor to verify that it is
securely fastened. Figure B-20
shows an SRS suppressor installed
on the component panel.
7. Remove the union connecting
ELUENT IN and ELUENT OUT and
connect these lines to the
corresponding ports on the
suppressor.
Figure B-20. Suppressor Installed

(SRS Shown)
8. Remove the fitting plug from REGEN IN and connect it to the REGEN
IN port on the suppressor. Do not connect the REGEN OUT port until
after completing the eluent generator setup (Section B.13).
9. Replace the cover on the column heater, making sure the GUARD IN
line is aligned with the slot on the side of the heater cover.
Doc. 031857-01 3/03 B-23

B.10 Connecting the Waste Lines

The ICS-2000 has the following waste lines:
PUMP WASTE carries prime waste from the pump.
TO WASTE OUT carries sample overflow from the injection valve.
WASTE, GAS SEPARATOR carries system waste from the suppressor.
Untape the coiled waste lines from the rear panel. Place the ends of the PUMP
WASTE and TO WASTE OUT lines into a waste container.
Direct the WASTE, GAS SEPARATOR line from the top of the ICS-2000 to the rear
panel. Snap the line onto one of the tubing clips on the rear panel. Connect the line
to the gas separator waste tube (see Section B.10.1).
NOTE To prevent waste from siphoning back into the system,

check the lines periodically to be sure they are not bent,
pinched, or elevated at any point.
B.10.1 Installing the Gas Separator Waste Tube

1. Locate the gas
separator waste tube Connect the
assembly (see WASTE, GAS
SEPARATOR line
Figure B-21) in the here
ICS-2000 Ship Kit
(P/N 057905).
2. Connect the WASTE,
GAS SEPARATOR
line to the 3-mm
(1/8-in) ID white
Teflon tubing on the
gas separator waste
tube assembly.
Figure B-21. Gas Separator Waste Tube Assembly
3. Place the gas separator waste tube assembly into the waste container.
Make sure the tubing junction (where the white Teflon tubing meets
the black polyethylene tubing) is above the top of the container and
B-24 Doc. 031857-01 3/03

Connecting the Waste Lines
that the gas separator waste tube and the waste container are open to
the atmosphere (see Figure B-22).
Waste, Gas
Separator Line
Gas Separator
Waste Waste Tube Assembly
Container
Figure B-22. Gas Separator Waste Tube Installation
DO NOT CAP THE WASTE CONTAINER: The ICS-2000 uses an

electrolytic process that results in the production of small amounts of
oxygen or hydrogen gas. To ensure that the gas is not trapped in a
closed container and allowed to concentrate, install a 1.3-cm (0.52-in)
ID black gas separator waste tube (P/N 045460) in an uncapped waste
container. Connect the Waste, Gas Separator line to the waste tube
(see Figure B-22).
NE FERMEZ PAS LE CONTENEUR DE GAZ RSIDUEL L : Le ICS-2000

travaille avec un proces dlectrolyse, qui produit des petites
quantits de gaz doxygne ou dhydrogne. Afin de garantir que le
gaz ne soit pas enferm dans un conteneur ferm et puisse sy
concentrer, connectez un tube noir gaz rsiduel (diamtre intrieur =
1,3 cm ; n de commande 045460) un conteneur ouvert (non ferm).
Connectez le conteneur rsiduel au tube rsiduel/gaz sparateur
(dsign: Waste, Gas Separator).
Doc. 031857-01 3/03 B-25

VERSCHLIESSEN SIE DEN ABFALLBEHLTER NICHT: Der ICS-2000

verwendet einen Elektrolyseprozess, wodurch kleine Mengen an
Sauerstoff und Wasserstoff entstehen. Fhren Sie einen schwarzen
Gasabscheiderschlauch (ID = 1,3 cm; Bestell-Nr. 045460) in einen
offenen (unverschlossenen) Abfallbehlter, damit sich das Gas nicht
in einem geschlossenen Behlter sammelt und aufkonzentriert.
Verbinden Sie die mit Waste, Gas Separator bezeichnete Leitung mit
dem Abfallschlauch.
B.11 Setting Up the Eluent Reservoir

1. Rinse the eluent reservoir.
2. Fill the reservoir with deionized water.
3. Place the reservoir on top of the ICS-2000.
4. Install the cap and hand tighten.
NOTE The ICS-2000 does not require pressurized reservoirs.

However, if eluent is manually degassed or is sensitive to
contamination, Dionex recommends pressurizing the
reservoir with helium or nitrogen. See Section B.21 for
instructions.
B.12 Priming the Pump

1. Verify that the eluent reservoir is filled, the reservoir cap is installed and hand
tightened, and the liquid line from the ICS-2000 to the reservoir cap is
connected (see Section B.11).
2. Verify that the waste lines are directed to a waste container.
3. The priming procedure consists of two parts:
Priming the eluent lines with a syringe. Perform this procedure at initial
installation, after changing eluents, or when eluent lines are empty.
Priming the pump heads with the Prime button. Perform this procedure
after the eluent lines are primed.
B-26 Doc. 031857-01 3/03

Priming the Pump
B.12.1 Priming the Eluent Lines with a Syringe
NOTE Prime the eluent lines after initial installation, after

changing eluents, or when eluent lines are empty.
1. Verify that the pump is turned off.

2. Connect a 10 mL syringe (P/N 054578) to the port in the priming
valve on the primary pump head (see Figure B-23).
Secondary
Pump Head
Waste Valve
(close)
Port
Primary
Pump Head
10 mL Syringe Priming Valve

(P/N 054578) (open)
Figure B-23. Priming the Eluent Lines
3. Open the priming valve by turning it one-quarter to one-half turn

counterclockwise.
4. On the ICS-2000 touch screen, touch the page name (for
example, ) on the bottom right corner to open a menu
of pages.
5. Touch PUMP to open the touch screen PUMP page (see Figure B-24).
Under Eluent Valve, touch the Open button.
Doc. 031857-01 3/03 B-27

Figure B-24. Pump Page: Eluent Valve Open
6. Draw the syringe back to begin pulling eluent through the flow path.
It may take several syringe draws to remove all air or previous eluent
from the tubing. Draw out a minimum of 20 mL of eluent to ensure
that the vacuum degas assembly is primed.
7. After priming the lines thoroughly, close the priming valve. Do not
overtighten the priming valve.
8. Touch Eluent Valve Closed on the touch screen PUMP page.
B-28 Doc. 031857-01 3/03

Priming the Pump
B.12.2 Priming with the Prime Button
NOTE Perform this procedure after priming the eluent

lines (see Section B.12.1).
1. Check that the priming valve on the primary pump head is closed (see
Figure B-25).
Secondary
Pump Head
Waste Valve
(open)
Primary
Pump Head
Priming Valve
(close)
Figure B-25. Priming the Pump
2. Open the waste valve on the secondary pump head by turning the
knob one-quarter to one-half turn counterclockwise (see
Figure B-25). Opening the valve directs the eluent flow path to waste
and eliminates backpressure.
3. Touch Prime on the ICS-2000 touch screen HOME page. Confirm that
the waste valve is open by pressing OK when the reminder message
appears. The pump will begin pumping at approximately 3.0 mL/min.
4. Continue priming the ICS-2000 until no air bubbles are exiting the
pump waste line.
5. Press Pump Off.
6. Close the waste valve. Do not overtighten. The pump is now ready
for operation.
NOTE If the two standard priming procedures described above
are unsuccessful, prime the pump with isopropyl
alcohol. See Section 5.15 for instructions.
Doc. 031857-01 3/03 B-29

B.13 Setting Up the Eluent Generator

Before beginning:
Remove the EluGen cartridge (EGC) and the CR-TC from their shipping boxes.
Figure B-26 illustrates the ICS-2000 after the EGC is installed.
EGC IN EGC OUT
EGC
Note: The CR-TC is
installed inside the
holder and is not
EGC Holder visible after installation
EGC and
CR-TC Cable
Connections
Figure B-26. ICS-2000 with an EGC Installed (Top View)
Figure B-27 illustrates the liquid flow path through the eluent generator
components after all plumbing connections are complete. The EGC and CR-TC
are shipped in separate boxes. The EGC degas assembly is installed inside the
EGC holder at the factory. When installation is complete, all components fit inside
the EGC holder.
B-30 Doc. 031857-01 3/03

Setting Up the Eluent Generator
EGC VENT
EGC
Send To
Waste
INLET OUTLET
EGC EGC
IN OUT
Connected to
Pump Pulse TO PUMP/
DAMPER
Dampler
TO DEGAS
ELUENT IN EGC
DEGAS
TO DEGAS
ELUENT OUT
DEGAS
ELUENT OUT
CR-TC
Eluent
Out
Regen In
TO CR-TCEluent Out TO CR-TC
ELUENT OUT ELUENT IN
(yellow) WASTE,
Connected to (red)
GAS
TO INJ -TC Regen Out Eluent In
Inject Valve CR SEPARATOR
VALVE IN - P TO EN IN
G
Port P (2) R E an g e)
(or
TO CR-TC
REGEN OUT
Connected to (blue)
Connect to
TO SRS/AES Gas Separator
Suppressor REGEN OUT
Regen Out Assembly
Figure B-27. Eluent Generator Flow Schematic
Doc. 031857-01 3/03 B-31

B.13.1 Installing the CR-TC

1. Tilt the cartridge
holder to view the
bottom of the holder
and brace the holder
against the back corner
of the ICS-2000 (see
Figure B-28).
Metal ball stud

for mounting
the CR-TC
Figure B-28. Cartridge Holder (tilted to view the bottom)
2. Before installing the

E= Electrical connection (2)
CR-TC, note the metal (Do not remove)
ball stud inside the P=Port (4) P
bottom of the cartridge (Remove plugs) E
holder (see P
Figure B-28) and the
bracket on the CR-TC
mounting plate (see
Figure B-29). These P
P
are used to mount the E
CR-TC inside the
holder after it is Bracket for mounting the
CR-TC on the holder
plumbed.
Figure B-29. CR-TC
3. Remove the plugs from the four ports, labeled P on Figure B-29.
Do not remove the two electrical connections, labeled E on the
figure.
B-32 Doc. 031857-01 3/03

4. With the CR-TC oriented as shown in Figure B-30, connect the lines
to the corresponding ports on the CR-TC. Match the color coded
labels on the EGC holder lines to the color coded labels for the CR-
TC ports.
NOTE To help retain the fittings and ferrules on the lines,
remove the union from each line just before
connecting the line to a port.
Blue
Red Yellow
Orange
Figure B-30. Plumbed CR-TC
5. Check that none of the lines are caught under the CR-TC and then
push the CR-TC onto the metal stud inside the EGC holder (see
Figure B-31). Push down until the CR-TC snaps into place.
Figure B-31. CR-TC Installed in Holder
Doc. 031857-01 3/03 B-33

6. Feed the CR-TC cable through the slot on the side of the EGC holder
(see Figure B-32).
CR-TC
Cable
Figure B-32. Installing the CR-TC

7. Turn the EGC holder right-side up and set it back into position.
B.13.2 Installing the EGC

1. Orient the EGC with the fittings facing up (see Figure B-33) and
remove the plugs from the EGC INLET and OUTLET fittings.
Fitting Plugs
INLET
OUTLET
Figure B-33. EGC Fitting Plugs
B-34 Doc. 031857-01 3/03

2. Set the EGC in the service position on top of the ICS-2000 (see
Figure B-34 and Figure B-35).
EGC Service
Position
Figure B-34. EGC Service Position
Figure B-35. EGC in Service Position
Doc. 031857-01 3/03 B-35

3. Orient the EGC with the cable toward the cartridge holder (see
Figure B-36).
EGC Cable
Figure B-36. EGC Cable Orientation
4. Pull the coiled

black EGC IN and EGC IN
EGC OUT lines out
INLET
slightly from the Port
cartridge holder.
Disconnect the
EGC IN line from
the union that
connects it to the
EGC OUT line.
Connect EGC IN to
the EGC INLET
port (see
Figure B-37).
Figure B-37. Connecting the EGC Inlet Port
B-36 Doc. 031857-01 3/03

5. Locate the yellow

0.5 mL/min, 1000
psi (7 MPa)
Pressure
pressure restrictor Restrictor
coil (P/N 053765) Coil
in the ICS-2000
Ship Kit (P/N
057905). Connect
one end of this coil OUTLET
to the EGC OUTLET Port
port (see
Figure B-38).
Leave the other end
of the coil
unconnected.
Figure B-38. EGC Outlet Connection for

NOTE The pressure restrictor connection is temporary; it

is used only during the EGC conditioning procedure
describe in Section B.13.3.
6. Turn the EGC cartridge over (with the fittings facing down). Shake
the EGC vigorously, and tap it with the palm of your hand 10 to
15 times. Check that all trapped bubbles are dislodged.


Doc. 031857-01 3/03 B-37

7. Slide the EGC down into the

holder until it stops. Make sure
the cable and restrictor coil
remain out of the holder (see
Figure B-39).
NOTE To avoid crimping the

lines inside the holder, do
not twist the cartridge
when you slide it into the
holder. The lines are
designed to coil inside the
holder.
Figure B-39. Installing the EGC in the Holder
8. Remove the plug from

the EGC-1 connector on
top of the ICS-2000.
NOTE The EGC-2
connector is
reserved for
future use.
9. Orient the cartridges

blue 4-pin electrical
cable connector as
shown in Figure B-40.
Push it onto the EGC-1
connector on the ICS-
2000. Twist the ring on
the cable connector
fingertight to secure it.
Figure B-40. Connecting the EGC Cable
B-38 Doc. 031857-01 3/03

B.13.3 Conditioning the EGC

The EGC must be conditioned before initial use. This requires directing
the pressure restrictor coil (connected to the EGC outlet) to waste, and
then generating 50 mM of eluent (either KOH or MSA) at 1.0 mL/min for
10 minutes. Follow the steps below:
1. Locate the EGC vent line tubing, label, and barbed luer lock, in the
Ship Kit (P/N 057905). Locate the luer adapter and cap, supplied with
the EGC. Slide the label onto one end of the tubing and then push the
barbed luer lock onto the tubing.

acid. Wear protective eye wear and gloves when handling the EGC.

2. Unscrew and remove

the plug from the vent
opening on the side of Vent Plug
the EGC (see (remove)
Figure B-41).
Figure B-41. EGC Vent Plug
Doc. 031857-01 3/03 B-39

3. Screw the luer adapter

Luer Adapter
onto the vent opening. Luer Lock
Remove the cap on
the luer adapter by
twisting. Save the
cap. EGC
Vent Line
4. Twist the luer lock
and EGC vent line
into the luer adapter
(see Figure B-42).
Figure B-42. Installing the EGC Vent Line
NOTE To prevent leaks from the EGC, always replace the

luer adapter cap before moving the EGC.
5. Direct the EGC vent line to the rear of the ICS-2000 and snap it onto
one of the tubing clips on the rear panel. Direct the vent line to the
waste container and insert it down into the gas separator waste tube
about 4 to 6 inches.
6. Set a temporary waste container, such as a beaker, on top of the
ICS-2000 and direct the yellow backpressure coil from the EGC
OUTLET port to the container.
7. From the Chromeleon Control Panel or the ICS-2000 touch screen

HOME page, set the pump flow rate to 1.00 mL/min and set the EGC
concentration to 50 mM.
8. Verify that the suppressor and CR-TC are off.
To avoid damaging the suppressor and CR-TC, always turn off the
suppressor and CR-TC before conditioning the EGC. The pump flow is
on during conditioning, however, no flow reaches the suppressor or
CR-TC.

10. Run at the selected settings (1.0 mL/min at 50 mM) for 30 minutes.
11. Turn off the pump.
B-40 Doc. 031857-01 3/03

12. Disconnect the EGC cable

13. Remove the backpressure tubing from the waste container and
remove the waste container.
14. Lift the EGC out of the holder, turn it over, and set it in the service
position.
15. Disconnect the
pressure restrictor EGC OUT
coil from the EGC
OUTLET port.
OUTLET
16. Connect the EGC Port
OUT line from the
holder to the
OUTLET port (see
Figure B-43).
Figure B-43. EGC Outlet Connection

17. Turn over the EGC. Check for bubbles; if necessary, shake and tap the
EGC to remove bubbles
19. Do not reconnect the EGC cable until after hydrating the CR-TC.
B.13.4 Hydrating the CR-TC

The CR-TC must be hydrated before initial. This requires running
deionized water through it for 10 minutes, while bypassing the columns
and suppressor.
1. Locate the 10-32 to 1/4-28 coupler (P/N 042806) in the Ship Kit
(P/N 057905).
2. Temporarily disconnect the TO INJ VALVE IN - P line from port P on
the injection valve.
3. Connect the coupler between the TO INJ VALVE IN - P line and the
SRS/AES REGEN OUT line.
Doc. 031857-01 3/03 B-41

4. Verify that the suppressor is off.
To avoid damaging the suppressor, always turn off the suppressor

before hydrating the CR-TC. The pump flow is on during conditioning,
however, no flow reaches the suppressor.
5. Turn on the pump and set the flow to the rate recommended for your
application. Pump deionized water through the CR-TC for at least 10
minutes.
6. Turn off the pump and disconnect the coupler.
7. Connect the TO SRS/AES REGEN OUT line to the REGEN OUT port on
the suppressor.
8. Reconnect the TO INJ VALVE IN - P line to port P on the injection
valve.
9. Reconnect the EGC cable.
B.13.5 Completing the EGC Installation

1. Remove the plug from the CR-TC connector on top of the ICS-2000
2. Orient the CR-TCs
black 3-pin electrical
cable connector as
shown in
Figure B-40. Push it
onto the CR-TC
connector on the ICS-
2000. Twist the ring
on the cable
connector and
fingertighten to
secure it.
Figure B-44. Connecting the CR-TC Cable
3. Record the serial number of the new cartridge in Chromeleon. The

number is printed on a label on the cartridge.
B-42 Doc. 031857-01 3/03

a. Open the Server Configuration program (select

Start>Programs>Chromeleon>Server Configuration).
b. Double-click the ICS-2000 system icon. The properties dialog
box for the ICS-2000 appears.
c. Click the Eluent Generator tab.
d. Select the Installed check box.
e. Enter the cartridge serial number and click OK.
1234567890
Figure B-45. Eluent Generator Configuration Properties Example
Doc. 031857-01 3/03 B-43

B.13.6 EGC Backpressure Requirements

The EGC requires at least 14 MPa (2,000 psi) of backpressure for optimal
removal of electrolysis gas from the eluent produced by the cartridge.
During system equilibration (see Section B.16), monitor the system
pressure and verify that it is between 14 and 20 MPa (2000 and 3000 psi).
A system backpressure of 16 MPa (2,300 psi) is ideal.
If necessary, install backpressure restrictor tubing between the injection
valve and the ELUENT OUT port on the EGC. The pressure restrictor coils
listed in Table B-4 are included in the ICS-2000 Ship Kit (P/N 057905).
Connect the backpressure coil to Port P (2) on the injection valve and
connect the other end to the TO INJ VALVE IN - P line.
Part Number Description Flow Rate Approximate Back-

pressure Added
053763 4-mm Pressure Restrictor 2.0 mL/min 7 MPa (1,000 psi)
1.0 mL/min 3.5 MPa (500 psi)
053762 4-mm Pressure Restrictor 2.0 mL/min 3.5 MPa (500 psi)
1.0 mL/min 1.75 MPa (250 psi)
053765 2-mm Pressure Restrictor 0.50 mL/min 7 MPa (1,000 psi)

0.25 mL/min 3.5 MPa (500 psi)
053764 2-mm Pressure Restrictor 0.50 mL/min 3.5 MPa (500 psi)
0.25 mL/min 1.75 MPa (250 psi)
Table B-4. Pressure Restrictor Coils
B-44 Doc. 031857-01 3/03

Setting Up a Chromeleon Application
B.14 Setting Up a Chromeleon Application

Chromeleon provides application templates, which you can use to quickly get
started running. To use the application templates, you need to know the type of
column and suppressor you will be using. This section shows how to create a list
of samples to be processed (a sequence) and how to use an application template.
1. Identify the type of column and suppressor installed in the ICS-2000.
2. Start Chromeleon (select Start>Programs>Chromeleon>Chromeleon).
The Chromeleon main window and Browser appear (see Figure B-46).
Figure B-46. Chromeleon Main Window and Browser
Doc. 031857-01 3/03 B-45

3. In the Browser, select File>New and select Sequence (using Wizard) (see
Figure B-47).
Figure B-47. Creating a New Sequence
The Sequence Wizard Welcome page appears (see Figure B-48).
Figure B-48. Sequence Wizard Welcome Page
B-46 Doc. 031857-01 3/03

NOTE For details about a Sequence Wizard step, click the Help
button on the Sequence Wizard page.
4. Click Next>.
The Sequence Wizard Timebase page appears (see Figure B-49).
Figure B-49. Example: Sequence Wizard Step 1
5. Select the ICS-2000 timebase and click Next>.
Doc. 031857-01 3/03 B-47

The Unknown Samples page appears (see Figure B-50).
6. Select Use Template from the drop-down list.

7. In the Template for Sample Name field, type Sample, click the right arrow,
and select Sample Number #n.
8. In the Number of Vials field, type 1.
9. Use default settings for the remaining parameters on the page.
NOTE You can edit the sequence later, to add more samples
and select the injection parameters appropriate for your
application.
B-48 Doc. 031857-01 3/03

10. Click Apply.

Figure B-51 shows Sequence Wizard Step 2 after a sample is defined.
Figure B-51. Example: Sequence Wizard Step 2 with Sample Defined
11. Click Next>.
Doc. 031857-01 3/03 B-49

The Standard Samples page appears (see Figure B-52).
Figure B-52. Example Sequence Wizard Step 3
12. Click Next> to omit this step and define standard injections later. Or, define
one or more standard injections, and then click Next>.
The Methods & Reporting page appears
B-50 Doc. 031857-01 3/03

13. Select the Use Application Template check box.

14. From the drop-down lists, select the type of suppressor to be installed and
then select the column.
In the example in Figure B-53, the 4-mm ASRS suppressor and AS17 column
are selected.
15. To select a report template, click the Browse button, go to the Dionex
Templates/Reports folder, and select a template (for example, default_letter).
16. Click Next>.
The Saving the Sequence page appears.
Doc. 031857-01 3/03 B-51

17. Enter a name for the sequence and a location (see the example in
Figure B-54).
18. Click Next> and then click Done on the last page of the Sequence Wizard.
The Browser appears, displaying the sequence you created (see Figure B-55).
Notice the three files in the top pane of the Browser window.
Figure B-55. Example Browser with Open Sequence
B-52 Doc. 031857-01 3/03

The .pgm file (program) contains commands and parameters for controlling
the ICS-2000, controlling the autosampler (if used), and acquiring sample
data.
The .qnt file (quantification method) contains peak identification and area
determination parameters.
The .pan file (Control Panel) lets you control and/or monitor the ICS-2000
and other modules that are connected to the timebase.
NOTE The sequence that you create here is intended as a

starting point only. You can add additional samples to
the sequence, change injection parameters, and edit the
.pgm and .qnt files. Refer to the Chromeleon online Help
for details.
NOTE After completing the installation, see Section 3.11 for

how to process the samples and standards in the
sequence.
Doc. 031857-01 3/03 B-53

19. Double-click the .pan file to open the Control Panel for your system (see the
example in Figure B-56).
Figure B-56. ICS-2000 System Control Panel Example
NOTE If the Connected check box is not selected, click the box
to connect the ICS-2000 to the Control Panel.
B.14.1 Verifying Chromeleon Communication

Verify that Chromeleon is communicating with the ICS-2000 by clicking
the Inject and then the Load button on the Control Panel. If
communication is occurring, you will hear the valve actuate as it changes
position. Go on to Section B.15.
B-54 Doc. 031857-01 3/03

Setting the Eluent Level
B.15 Setting the Eluent Level

After filling the reservoir, open the HOME page and enter the volume of liquid in
the reservoir in the Eluent Level field (see Figure B-57), or enter the volume in
the Eluent Bottle field on the Chromeleon Control Panel (see Figure B-58). The
ICS-2000 determines the eluent usage, by monitoring the flow rate and the length
of time the pump is on, and updates the field as the eluent is used up. A warning is
displayed if the level falls below 200 mL. The warning is repeated at 100 mL and
at 0 mL.
Enter the volume of Note: The Eluent Level

liquid in the reservoir field is updated as the
liquid is used up.
Figure B-57. Home Page: Setting the Eluent Level
Enter the volume of Note: The Eluent Bottle

liquid in the reservoir field and slider gauge
are updated as the
liquid is used up.
Figure B-58. Chromeleon Control Panel: Setting the Eluent Level
Doc. 031857-01 3/03 B-55

B.16 Equilibrating the System

1. After priming the pump, turn on the pump and set the flow to the operating
rate.
2. Flush the system for about 5 minutes to equilibrate.
3. Monitor the system pressure from the Control Panel to make sure it is at the
expected pressure for the installed column (refer to the column manual for
details) and is stable. If the pressure is less than the expected amount, gas may
be trapped in the system. Release the gas by removing the pump fitting on the
injection valve. The fitting is labeled P (2). Allow the air to escape and then
reconnect the fitting.
4. Check that liquid is flowing out of the suppressor REGEN OUT waste line and
that the pressure is stable.
5. Monitor the baseline conductivity. In general, it should be <30 S for a system
set up for anion analyses, and <2 S for a system set up for cation analyses.
Equilibration time varies and it can take some time to reach these expected
values.
B.17 Verifying Operational Status

After the system has equilibrated, verify the actual pump pressure and stability by
monitoring the pump pressure reading on the Chromeleon Control Panel (or the
touch screen HOME page). Write down the short-term pressure fluctuations; they
should be less than 0.13 MPa (20 psi).
ICS-2000 installation is complete. For routine operation, refer to Chapter 3.
B-56 Doc. 031857-01 3/03

Connecting an AS50 Autosampler (Optional)
B.18 Connecting an AS50 Autosampler (Optional)
B.18.1 AS50 Configuration Requirements

To use an AS50 autosampler with the ICS-2000, the AS50 must meet the
following requirements:
An injection valve cannot be installed in the AS50
The AS50 must have Moduleware version 1.11 or later installed
Control of the ICS-2000 injection valve must be enabled in the AS50
The following AS50 models are configured at the factory to meet the
above requirements:
AS50 without injection valve (P/N 061309)
AS50 without injection valve; with sample preparation (P/N 061310)
AS50 without injection valve; with sample preparation and sample
tray cooling (P/N 061311)
AS50 without injection valve; with sample tray cooling (P/N 061312)
Notes
To identify the version of Moduleware currently installed in the

AS50, go to the AS50 POWER UP screen (press Menu, 8, and 1). If a
Moduleware update is required, contact Dionex.
In order to use an AS50 that has an injection valve installed, the valve
must be disconnected from the AS50 electronics. Contact Dionex for
assistance. The AS50 electronics components cannot be serviced by
the user.
If the AS50 is currently running with a Thermal Compartment (TC)
or Chromatography Compartment (CC) and you are now going to use
it with an ICS-2000, the injection valve is typically installed in the TC
or CC, not in the AS50. If this is the case, verify that the correct
Moduleware version is installed, and enable control of the ICS-2000
injection valve (see Section B.18.3).
After the AS50 is configured for use with the ICS-2000, all AS50 modes
of injection (full-loop, partial-loop, and partial-loop limited-sample) are
supported. In addition, all AS50 injection valve commands (whether
Doc. 031857-01 3/03 B-57

issued from the AS50 front panel or from Chromeleon) will control the
ICS-2000 injection valve. For Chromeleon control, the AS50 must be
added to the ICS-2000 timebase (see Section B.8). For front panel
control, the AS50 and ICS-2000 can be set up for stand-alone operation.
This requires a TTL cable connection between the AS50 and the ICS-
2000. See Section D.3 for stand-alone setup instructions.
B.18.2 AS50 Connections

1. Place the AS50 to the left of the ICS-2000 on the workbench.
2. Open the ICS-2000 and AS50 doors.
3. The needle seal line that extends from the inject port in the
autosampler is coiled inside the AS50 door, on the right side. Route
this line through the AS50 right side slot (see Figure B-59) and the
ICS-2000 left side slot to the ICS-2000 injection valve.
The needle seal line from the AS50 inject port to the ICS-2000 injection
valve is calibrated for use with the ICS-2000. To ensure injection
precision, do not shorten (by cutting) or lengthen this line, or replace
it with a different (uncalibrated) line.
Route AS50
needle seal line
to ICS-2000
injection valve
Insert the waste line

from the ICS-2000
injection valve here
Figure B-59. AS50 Drip Tray
B-58 Doc. 031857-01 3/03

Connecting an AS50 Autosampler (Optional)
4. Connect the needle seal

line from the AS50 to port AS50
Needle
S (5) on the injection valve
Seal Line
(see Figure B-60).
The green waste line that is
Waste
connected to port W (6) on
Line
the injection valve (see
Figure B-60) is connected
with a union to a Teflon
waste line (see
Figure B-61) and routed
through the tubing chase to
the ICS-2000 rear panel.
Figure B-60. ICS-2000 Injection Valve
5. Disconnect the green
waste line (labeled AS50
TRAY) from the union and
route the line to the drip
tray in the autosampler
compartment.
Tubing AS50 TRAY
You can either leave the Chase Waste Line
Teflon
disconnected Teflon waste Waste Union
(disconnect
from union)
line and union in the Line
tubing chase, or pull the
line out from the front.
Figure B-61. Injection Valve Waste Line Union
6. Push the end of the green AS50 TRAY line into the small round opening on the
right side of the AS50 tray (see Figure B-59).
Make sure the injection valve waste line is not elevated above the
injection valve at any point between the valve and the AS50 drip tray.
NOTE For PEEK waste lines, sharply bend the waste line
tubing about 5-mm from the end to ensure it stays in
place in the opening in the drip tray. When bending the
tubing, be sure not to restrict the inner diameter.
7. If you have not already done so, add the AS50 to the Chromeleon timebase
(see Section B.8).
Doc. 031857-01 3/03 B-59

B.18.3 Enable AS50 Control of the Injection Valve

Follow the steps below if you are connecting an AS50 that was not
configured at the factory for ICS-2000 support. Injection valve control is
already enabled in pre-configured AS50 models (see the list in
Section B.18.1).
1. On the AS50 front panel, press Menu and 0 to go to the TIME
FUNCTION OUT screen (see Figure B-62). In the LOAD/INECT VALVE:
TTL 1 field, select ENABLED.
TIME FUNCTION OUT

TTL
LOAD/INJECT VALVE: 1 ENABLED
LOAD/INJECT VALVE: 2 DISABLED
Help Prompt
Figure B-62. AS50 Time Function Out Screen
2. Turn the AS50 power off and then back on.

All AS50 injection valve commands (whether issued from the AS50
front panel or from Chromeleon) will now control the ICS-2000
injection valve.
B-60 Doc. 031857-01 3/03

Connecting an AS40 Automated Sampler (Optional)
B.19 Connecting an AS40 Automated Sampler (Optional)

1. Place the AS40 to the left
AS40
of the ICS-2000 on the Sample
workbench. Outlet Line
2. Open the front door of the

ICS-2000 and thread the
outlet line from the AS40
through the left side slot
at the front of the ICS-
2000.
3. Connect the outlet line
from the AS40 to port
S (5) of the injection valve
(see Figure B-63).
Figure B-63. ICS-2000 Injection Valve
4. Locate the relay control cable (P/N 047946) supplied with the AS40.
5. Remove the 2-position connector plug from the pair of wires labeled LOAD on
the relay control cable.
6. Locate the 12-position connector
plug (P/N 923686) in the ICS-
2000 Ship Kit (P/N 057905) (see Position 1
Figure B-64). Locking

Screws
7. Attach the red wire from the
relay control cable to position 1 Position 12
on the plug, and attach the green
wire to position 2. This will be
used to connect the AS40 LOAD Figure B-64. 12-Position Connector Plug
relay to RELAY OUT 1 on the
ICS-2000.
To attach a wire to the plug, strip the end of the wire, insert it into the plug,
and use a screwdriver to tighten the locking screw.
When attaching wires to the connector plug, be careful not to allow
stray strands of wire to short to the adjoining position on the
connector.
Doc. 031857-01 3/03 B-61

NOTE If RELAY OUT 1 is not available, you can connect to

RELAY OUT 2 or to one of the TTL outputs. For RELAY
OUT 2, connect the red wire to position 3 and the green
wire to position 4. For TTL OUT 1, connect the red wire
to position 5 and the green wire to position 11. For TTL
OUT 2, connect the red wire to position 6 and the green
wire to position 12.
8. Connect the relay control cable's 10-position connector plug to the RELAY
CONTROL connector on the AS40 rear panel (see Figure B-65).
9. Plug the 12-position connector plug into the TTL and relay connector on the
ICS-2000 rear panel (see Figure B-65). Make sure the red wire connects to
position 1 and the green wire connects to position 2.
Figure B-65. Example AS40 Autosampler Connection
The AS40 Load relay is now dedicated to the ICS-2000 RELAY OUT 1. Use this
relay for running with Chromeleon. When you set up the ICS-2000 application
(see Section B.14), commands for controlling the AS40 Load relay and switching
the ICS-2000 injection valve are included by default in the program file (see
Figure B-66).
B-62 Doc. 031857-01 3/03

Analog Output Connection (Optional)
Relay 1 turned on to start Relay 1 turned off after

the AS40 Load cycle and 138 seconds
load the sample loop
Injection valve Injection valve

switched to Inject switched back
to Load
Figure B-66. Example Program for AS40 Control
B.20 Analog Output Connection (Optional)

The analog output connector on the ICS-2000 rear panel outputs an analog voltage
signal proportional to the conductivity measured by the cell. The output is filtered
using the selected data rise time (see Section C.10.1). The analog output can be
connected to an analog-to-digital converter such as an integrator or other
recording device. Refer to the documentation for the device for connection
instructions.
Analog output is 0 to 1V, scaled to the selected range (see Section C.10.3).
For an example setup for ICS-2000 stand-alone operation with an AS50
autosampler, see Section D.3.
B.21 Pressurizing the Eluent Reservoir (Optional)

The ICS-2000 does not require pressurized reservoirs. However, if eluent is
manually degassed or is sensitive to contamination, Dionex recommends
pressurizing the reservoir with helium or nitrogen. The air regulator accessory
bracket and other items needed for pressurizing the eluent reservoir must be
ordered separately (P/N 060054).
Doc. 031857-01 3/03 B-63

B.21.1 Connecting the Gas Source (Optional)

1. Locate the barbed fitting (P/N 030071), pipe thread reducer
(P/N 030087), 3-mm (1/8-in) ID tubing (P/N 040793), and ICS-2000
air regulator accessory (P/N 060054). These parts must be ordered
separately.
2. Use the barbed fitting and pipe thread reducer to connect the 3-mm
(1/8-in) ID tubing to a clean gas source, regulated to between 0.55
and 0.83 MPa (80 and 120 psi).
3. Push the other end of the tubing onto the inlet of the air regulator (see
Figure B-67).
4. Remove the eluent reservoir cap.
5. Connect the gas line from the eluent reservoir cap to the gas line on
the air regulator outlet.
6. Slip the air regulator accessory bracket over the neck of the eluent
reservoir (see Figure B-67).
Eluent Gas Line

Air Regulator
Accessory
Bracket
Gas Inlet Line

3-mm (1/8-in) ID
Connect to
gas source
Figure B-67. ICS-2000 Pressurized Eluent Reservoir Connections (Optional)
B-64 Doc. 031857-01 3/03

Pressurizing the Eluent Reservoir (Optional)
B.21.2 Pressurizing the Eluent Reservoir (Optional)
NOTE Do not pressurize the ICS-2000 until after the

reservoir is plumbed.
1. Pull out the air regulator knob and turn it fully counterclockwise to
ensure there is no pressure to the reservoir when the gas source is
turned on.
2. Turn on the gas source.
3. Pull out the air regulator knob and turn it clockwise to pressurize the
eluent reservoir.
4. Adjust the pressure to between 30 and 40 kPa (5 and 6 psi). Push the
regulator knob back in.
Do not pressurize the eluent reservoir above 70 kPa (10 psi).
Ne mettez jamais les rservoirs d'luants sous une pression

suprieure 0,07 MPa (10 lb/po).
Setzen Sie den Eluentbehlter auf keinen Fall einem Druck ber 0,07
MPa aus.
Doc. 031857-01 3/03 B-65

B.22 Pump Continuous Seal Wash Connections (Optional)

The pump includes a seal wash assembly that can be set up to continuously rinse
the back of the piston seals to remove salt crystals and prolong the life of the seals.
Follow the steps below to set up this feature.
1. Fill a flush bottle with either deionized water or a combination of deionized
water and 10% or 20% isopropyl alcohol. (Isopropyl alcohol will inhibit
bacterial growth in the water.)
2. Place the flush bottle on top of the ICS-2000. During operation, gravity
maintains flow through the pump heads.
3. The flush solution is carried to the piston seal wash assembly and out to waste
via 1.5-mm (0.06-in) ID tubing (P/N 055847). Locate this tubing in the ICS-
2000 Ship Kit and cut the tubing into three unequal pieces in the following
lengths:
117 cm (46 in)
152 cm (60 in)
15 cm (6 in)
4. Install the tubing as follows (see Figure B-68 and Figure B-69):
a. Push the 117-cm (46-in) piece of clear tubing onto the drain tube on the
bottom of the secondary pump head. Place the free end of this tubing in
the flush bottle. Make sure the end of the tubing is near the bottom of the
bottle.
Drain Tube
Drain Tube
Primary Pump
Head
Note: The drain

tubes on the
bottom of each
Secondary
pump head are not
Pump Head
visible in the
photo.
Figure B-68. Primary and Secondary Pump Heads with Drain Tubes
B-66 Doc. 031857-01 3/03

Pump Continuous Seal Wash Connections (Optional)
b. Push the 152-cm (60-in) piece of clear tubing onto the drain tube on the
top of the primary pump head. This is the waste line. Route this waste line
through the lower tubing chase and out the back of the ICS-2000.
c. Push the 15-cm (6-in) piece of clear tubing over the drain tube on the top
the secondary pump head. Push the other end of the tubing over the drain
tube on the bottom of the primary pump head.
d. Place a 10 mL syringe (P/N 054578) at the end of the waste line, press the
syringe against the line to form a seal, and draw out all of the air.
e. Push approximately 5 cm (2 in) of black 0.25-mm (0.01-in) ID tubing
(P/N 057057) into the end of the waste line.
NOTE The black tubing creates a flow restriction. Assuming a

height difference of about 76 cm (30 in) between the
flush bottle and the waste container, this setup provides
a flow of one drop of flush solution every 5 to 30 seconds.
f. Place the end of the waste line in a waste container.

g. This completes the piston seal wash installation. Periodically refill the
flush bottle and empty the waste container as required.
Tubing, 117 cm (46 in) long

Flush
Bottle
Primary Pump Head
Secondary Pump Head

Insert black tubing into Waste

end of waste line Container
Figure B-69. Piston Seal Wash Flow Schematic
Doc. 031857-01 3/03 B-67

B.23 Manually Connecting to a Control Panel

This section describes how to manually connect the ICS-2000 to a Control Panel
if you do not use the application templates described in Section B.14.
1. In the Browser, expand the Dionex Templates\Panels\Dionex_IC\ICS-2000
folder. Several System Control Panels, corresponding to various system
configurations, are provided.
2. Open the panel for your system configuration by double-clicking its name in
the list. For example, if your system includes an ICS-2000 and an AS50
autosampler, double-click either ICS-2000_System_AS50.pan or ICS-
2000_Traditional_System_AS50.pan.
NOTE The two types of panels (system and traditional

system) are similar in function, but have different
looks. You can select either style, depending on
your personal preference.
When the Control Panel opens, the controls on the panel are not enabled (see
Figure B-70).
Figure B-70. ICS-2000 Traditional System Control Panel (Unconnected)
B-68 Doc. 031857-01 3/03

Manually Connecting to a Control Panel
3. To connect the Control Panel to the ICS-2000, open the Control menu and
click the name of the ICS-2000 timebase at the bottom of the menu.
The Control Panel is now connected to the ICS-2000 and the controls are
enabled (see Figure B-71).
Figure B-71. ICS-2000 Traditional System Control Panel (Connected to the ICS-2000)
Doc. 031857-01 3/03 B-69

B.24 Installation Troubleshooting

Problem: When the ICS-2000 power is turned on for the first time, a Windows
message box appears asking for a USB configuration file (cmwdmusb.inf).
Possible Cause: The USB cable was connected and the power turned on before
Chromeleon was installed.
Solutions:
Use one of the methods below to resolve the problem:
Click the Cancel button on the Windows message box. Turn off the ICS-2000
power and unplug the USB cable. Then, install Chromeleon, reconnect the
USB cable and turn on the ICS-2000 power. Windows will now automatically
recognize the new USB device.
Leave the message box open and insert the Chromeleon CD into the CD-
ROM drive. Click the Browse button on the message dialog box. The
cmwdmusb.inf file is located in the Drivers folder on the CD.
B-70 Doc. 031857-01 3/03

The LCD touch screen on the ICS-2000 front panel allows local control of most
ICS-2000 functions. This chapter describes how to operate the ICS-2000 from the
touch screen.
When the ICS-2000 starts up, the touch screen displays a startup page. This is
followed by the INFORMATION page, which displays version and serial numbers
and a list of installed options. After a few seconds, the HOME page (see
Figure C-1) is displayed. The HOME page provides controls for all normal, daily
operation of the ICS-2000.
C.1 Using the Touch Screen
Status Field
Edit Field
Command
Button
(selected)
Command
Button
(unselected)
Figure C-1. ICS-2000 Touch Screen Home Page
NOTE To adjust the screen contrast, open the front door and
adjust the knurled knob under the screen (see
Figure 2-8).
Doc. 031857-01 3/03 C-1

Edit fields and command buttons have blue text on a lightly shaded
background. Fields that display status information are not shaded.
Edit fields have square corners and command buttons are rounded.
To edit a field or select a command button, touch and release the field or
button with your fingertip.
NOTE When you touch a button or edit field, the action takes
effect when you lift your finger. If you unintentionally
touch a button or field, slide your finger away from the
button or field before lifting, to cancel the action.
Touching a command button (for example, ) executes the command

immediately.
When a command button is selected, it changes to white text on a dark
background (for example, ).
Touching an edit field (for example, ) opens a page with a

number keypad (see Figure C-2). Use the keypad to enter the desired
numerical value for the field and then touch the ENTER button.
Touch CANCEL
to cancel the
entry and return
Touch a to the previous
number to page.
enter the
value. Touch ENTER to
confirm the
entry and return
to the previous
page.
Figure C-2. Number Keypad
C-2 Doc. 031857-01 3/03

Touching the page name (for example, ) on the bottom right

corner opens a menu of pages (see Figure C-3).
Touch a page
name to display
the page.
Figure C-3. ICS-2000 Touch Screen Menu of Pages
Touching a page name on the menu of pages displays the selected page. For
example, touching SUPPRESSOR displays the SUPPRESSOR page (see
Figure C-4).
Touch to
select a
different
option.
Touch to
return to the
Home page.
Figure C-4. Suppressor Page
Touching returns you to the HOME page.
Doc. 031857-01 3/03 C-3

Touching opens a list of options from which to choose (see Figure C-5).
Touch an
option to
select it.
Note: To cancel
and retain the
current selection,
touch outside of
the list.
Figure C-5. Suppressor Page: Selecting an Option
C.2 Using the Touch Screen with Chromeleon

When the ICS-2000 is connected to a Chromeleon Control
Panel, the status field at the bottom center of the HOME page
displays Remote Mode. In this mode, most of the controls on the touch screen
pages are disabled. This prevents touch screen commands from conflicting with
Chromeleon commands.
In general, when the ICS-2000 is connected to Chromeleon, you can:
View all ICS-2000 operational status information (pressure, flow rate,
conductivity readings, etc.)
Go to any of the touch screen pages
View a plot of the conductivity data from the PLOT page. Controls for
adjusting the plot display are available. See Section C.5 for details.
To restore touch screen (local) control, clear the Connected check box on the
Chromeleon Control Panel.
C-4 Doc. 031857-01 3/03

C.3 Overview of ICS-2000 Touch Screen Pages

Figure C-6 illustrates the organization of the ICS-2000 touch screen pages.
HOME
These pages can be

PLOT opened from the menu
or the Home page
STATUS
PUMP
Calibration Pages Diagnostic Pages
EGC CONDUCTIVITY EGC RESISTIVE

CELL LOAD
MENU SUPPRESSOR ELECTRIC EGC

CONDUCTIVITY VERIFICATION
CELL
DETECTOR
COLUMN
INFORMATION HEATER
MODULE SETUP FLOW RATE
INPUT/OUTPUT DEGAS
DIAGNOSTIC
Figure C-6. Overview of ICS-2000 Touch Screen Pages
Doc. 031857-01 3/03 C-5

C.4 Home Page
Status Field
Edit Field
Command
Button
(selected)
Command
Button
(unselected)
Figure C-7. ICS-2000 Touch Screen Home Page
C.4.1 Home Page Pump Controls
Pressure Display
The HOME page indicates the current pressure reading from
the pressure transducer. The pressure unit can be set to psi
(the factory default), MPa, or bar (see Section C.7.1).
The minimum and maximum pressure limits are displayed
below the current pressure reading. If the pressure reading
goes outside these limits, the pump is stopped and an error
message appears in the Chromeleon Audit Trail and on the
touch screen. See Section 4.1 for troubleshooting
information. See Section C.7.1 for how to set the pressure
limits.
Flow Rate
The flow rate can be set to 0.00 (which turns off the pump) and to between 0.05
and 5.0 mL/min. The recommended operating flow rate is between 0.4 and
C-6 Doc. 031857-01 3/03

2.0 mL/min. Refer to the column manual for the flow rate to use with your column
and application. Column manuals are included on the Dionex Reference Library
Pump On/Off Control

Touching the On button immediately starts the pump flow at the rate displayed in
the Flow Rate field. Touching Off stops the flow.
Prime
The Prime button is reserved for use during the pump head priming procedure.
Touching the Prime button displays a confirmation page that reminds you to open
the waste valve. Open the valve, and then touch the OK button to begin priming.
Or, to exit the page without priming, touch the Cancel button. To stop priming,
touch the Off button. During priming, the flow rate is approximately 3.0 mL/min.
See Section B.14 for detailed priming instructions.
Eluent Level
Use this field to monitor the amount of liquid in the eluent reservoir. When you
fill the reservoir, enter the amount of liquid in the reservoir. For example, if the
reservoir contains 200 mL and you add 1 liter, enter 1.2 liters. Thereafter, the ICS-
2000 determines the eluent usage by monitoring the flow rate and the length of
time the pump is on. The ICS-2000 updates the Eluent Level field as the eluent is
used up. A warning first appears if the level falls below 200 mL. Warnings are
repeated at 100 mL and 0 mL.

Doc. 031857-01 3/03 C-7

C.4.2 Home Page EGC Controls

The EGC controls indicate the
type of EluGen Cartridge (EGC)
installed and the eluent
Cartridge Eluent concentration setting. The CR-TC
Type Concentration
field indicates whether the
Continuously-Regenerating Trap
Column is on or off.
To determine the eluent concentration for your application, refer to the column
manual. Column manuals are included on the Dionex Reference Library CD-
ROM (P/N 053891), located in the ICS-2000 Ship Kit (P/N 057905). When the
ICS-2000 is controlled from the front panel, only isocratic eluent delivery is
possible. With isocratic delivery the eluent composition and concentration remain
constant throughout the run. Gradient delivery in which the eluent concentration
changes over time is possible with Chromeleon control.
To set the eluent concentration or to turn on or off the CR-TC, touch the
concentration button. The ELUENT GENERATOR page appears (see Section C.8).
C.4.3 Home Page Column Heater

The temperature of the column heater can be controlled to
between 30 C and 60 C. For optimal performance, set the
column heater to at least 5 C above the ambient
temperature. To set the temperature, touch the Column
Heater field and enter the desired temperature on the number pad. To turn the
column heater off, set the temperature to 0. The display to the right of the
temperature setting indicates the heater status:
= column temperature is at equilibrium
column temperature is rising
column temperature is falling
Off column heater is off
C-8 Doc. 031857-01 3/03

C.4.4 Home Page Injection Valve Controls

The Inject and Load buttons select the position of the
injection valve. The current valve position is indicated with
a dark background and white text. For details about the
valve positions, see Section 2.4.5.
The ELAPSED TIME field displays the amount of time since
the last injection.
C.4.5 Home Page Detector Controls
Conductivity Readings
The offset conductivity is displayed in large numbers above
the total conductivity. The offset conductivity is the total
conductivity minus the current offset.
To determine the offset, allow the system to equilibrate after
startup. At equilibration, the conductivity reading is the background conductivity
(the eluent conductivity before sample injection). Touch Autozero to zero the
conductivity and offset this background reading from the total reading.
NOTE You can reverse the conductivity display to show the

total conductivity in large type, with the offset
conductivity below it in small type. Select this option on
the MODULE SETUP page (see Section C.12).
Cell Heater Controls

The temperature of the cell can be set to between 30 C and
55 C, but must be at least 7 C above the ambient
temperature. To set the temperature, touch the Cell Heater
field and enter the desired temperature on the number pad.
To turn off the cell heater, set the temperature to 0. The display to the right of the
temperature setting indicates the heater status:
= cell temperature is at equilibrium
cell temperature is rising
cell temperature is falling
Off cell heater is off
Doc. 031857-01 3/03 C-9

Suppressor Controls
The Suppressor controls indicate the suppressor current
setting and the type of suppressor installed.
To set the suppressor type, change the current setting, or
turn the suppressor on or off, touch the suppressor button.
The SUPPRESSOR page appears (see Section C.9).
C.4.6 Other Home Page Controls

This field displays Remote Mode when the ICS-2000 is
connected to Chromeleon and Local Mode when the
system is not connected to Chromeleon.
Opens the PLOT page, which provides a real-time plot of the detector
conductivity output. See Section C.5 for details.
Opens the STATUS page, which displays the status of various operating
parameters. See Section C.6 for details.
C-10 Doc. 031857-01 3/03

C.5 Plot Page

The PLOT page provides a real-time plot of the detector conductivity output. To
open the page, touch the PLOT button on the HOME page, or select PLOT from the
menu of pages. The page can display up to 60 minutes of data. Data older than
60 minutes is discarded. You can view the plot and adjust the display when the
ICS-2000 is under either local or computer control.
Figure C-8. Plot Page
Plot Controls
The plot offset button offsets the current background conductivity reading
and sets the plot baseline to zero. Subsequent output is plotted in relation to
the new zero point. Offsetting the plot does not affect the data sent to
Chromeleon, the analog output, or the data displayed on other pages.
The range field sets the highest conductivity reading displayed on the plot
(the vertical scale). If the tops of peaks are cut off, select a higher range. If
peaks are short, select a lower range.
The elapsed time field displays the time since injection.
The plot time field sets the length of time plotted on the page (the horizontal
scale).
Doc. 031857-01 3/03 C-11

C.6 Status Page

The STATUS page displays the current status of various operating parameters. To
open this page, touch the STATUS button on the HOME page or select STATUS from
the menu of pages.
Figure C-9. Status Page
Status Page Controls

Pressure and conductivity readings are the same as those displayed on the
HOME page.
The eluent bottle depicts the level of liquid in the eluent reservoir. The scale is
always 0 to 4 liters (regardless of the size of reservoir installed). After filling
the reservoir, go to the HOME page and enter the amount of liquid in the
reservoir (see Section C.4.1). The ICS-2000 monitors the eluent usage, based
on the flow rate and the length of time the pump is on. The liquid level in
the bottle falls as the reservoir empties. An error message is first displayed on
the screen when the level falls below 200 mL. The message is repeated at
100 mL and then at 0 mL.

C-12 Doc. 031857-01 3/03

The fields to the right of the bottle display the status of four other operating
parameters. You can choose from eight possible parameters to display here.
Figure C-9 shows the default parameters: Eluent time, Flow rate, EGC conc,
and Suppressor. To select different parameters, touch the Setup button. See
Section C.6.1 for details about how to change the status parameters, and
Section C.6.2 for a description of each parameter.
Touching the Busy button displays the BUSY page (see Figure C-10).
Figure C-10. Busy Page
Doc. 031857-01 3/03 C-13

C.6.1 Viewing Other Status Parameters

Follow the steps below to view the status of a parameter that is not
currently displayed on the STATUS page.
1. Touch the Setup button. A drop-down list replaces the label for each
field, and the Setup button changes to Apply (see Figure C-11).
Figure C-11. Status Page Setup
C-14 Doc. 031857-01 3/03

2. Touch the down arrow next to the field you want to change. A list of
the available status parameters appears (see Figure C-12).
Figure C-12. Status Page Parameter List
3. Touch the parameter you want to display.

4. When finished, touch the Apply button.
Doc. 031857-01 3/03 C-15

C.6.2 Status Parameter Details
Status Parameter Description

Eluent time The number of hours the eluent will last, if the pump runs
continuously at the current flow rate.
Flow rate The actual flow rate currently output by the pump.
EGC conc The actual concentration of eluent currently being generated.
Suppressor The actual current applied to the suppressor.
Elapsed time The number of hours since the last injection.
EGC life The percentage of ions remaining in the eluent generator cartridge.
Cell temp The temperature of the cell heater (C), followed by a status
symbol (=, , or ).
Column temp The temperature of the column heater (C), followed by a status
symbol (=, , or ).
C.7 Pump Page

Use the PUMP page to set parameters related to pump operation, including
pressure limits, pressure unit, vacuum degas pump settings, and eluent valve
control. To open this page, select PUMP from the menu of pages. The current
system pressure is displayed at the top of the screen.
Current
system
pressure
Figure C-13. ICS-2000 Touch Screen Pump Page
C-16 Doc. 031857-01 3/03

C.7.1 Setting Pump Pressure Limits and Selecting the

Pressure Unit
The first time the power to the ICS-2000 is turned on, the maximum
system pressure limit is 34.5 MPa (5000 psi) and the minimum pressure
limit is 0. The eluent generator, however, requires a maximum high limit
of 20.7 MPa (3000 psi) and a minimum low limit of 1.4 (200 psi). When
you configure the eluent generator cartridge in Chromeleon (see
Section B.13.5), the software sets the maximum and minimum limits for
the eluent generator automatically. If you are not using Chromeleon to
control the ICS-2000, set the limits on the PUMP page.
To change the high pressure limit, touch the HIGH field and enter the
desired limit on the number pad. The high limit must be at least
0.7 MPa (100 psi) above the low limit.
To change the low pressure limit, touch the LOW field and enter the
desired limit on the number pad.
To select the pressure unit for all touch screen pages that display pressure
values, touch the pressure unit field and select the desired unit on the list
(PSI, bar, or MPa) (see Figure C-14).
Select the
pressure unit
Figure C-14. Pump Page: Selecting the Pressure Unit
Doc. 031857-01 3/03 C-17

C.7.2 Setting Degas Operating Parameters

By default, the ICS-2000 monitors the degas pressure reading and turns
the degas pump on and off as required. To change the degas operating
option:
1. Select PUMP from the menu of pages.
2. Under Degas Settings, touch the options drop-down list. A list of
available options appears (see Figure C-15).
Select the
degas option
Figure C-15. Pump Page: Selecting Degas Options
NOTE Degas options can also be selected from the Chromeleon

Server Configuration program (see Section 2.4.1).
3. Select the desired option:

Always Off: The degas pump is always off.
Always On: The degas pump is always on. This setting is reserved for
test purposes by a Dionex Service Representative.
Select the Degas Mode, Always On option only when testing the vacuum
degas assembly. Do not select the Always On option for routine use.
Duty Cycle: The degas pump cycles on and off according to the times
specified in the Duty Cycle and Time Off fields. Duty Cycle specifies
for how long the degas pump runs during a cycle; Time Off specifies
the time between cycles.
Monitor: The ICS-2000 monitors the degas pressure reading and
turns the degas pump on and off as required.
C-18 Doc. 031857-01 3/03

C.7.3 Controlling the Eluent Valve

The eluent valve controls flow from the
eluent reservoir. During routine operation,
the valve opens and closes automatically
when the pump flow is turned on and off. However, during eluent line
priming, you can use the controls on the PUMP page to manually open the
valve, allowing liquid to flow through the lines when the pump is off. See
Section B.12.1 for eluent line priming instructions.
C.8 Eluent Generator Page

The ELUENT GENERATOR page displays the serial number, expiration date, and
remaining life of the EluGen cartridge (EGC). It also provides on/off control of
the Continuously Regenerated Trap Column (CR-TC). To open this page, touch
the EGC button on the HOME page or select EGC from the menu of pages.
Touch here to
Touch here drop-down a
to enter a list of existing
new serial serial numbers
number
Figure C-16. Eluent Generator Page
C.8.1 EGC Serial Number

The Serial Number field displays the serial number of the EGC currently
installed. After installing a new eluent generator cartridge, enter the
cartridge serial number. If you use Chromeleon to control the ICS-2000,
enter the serial number in the Chromeleon Server Configuration (see
Doc. 031857-01 3/03 C-19

Section B.13.5), not on the ELUENT GENERATOR page. If you enter the
serial number first in Chromeleon, the number is displayed on the
ELUENT GENERATOR page. However, if you enter the serial number on
the ELUENT GENERATOR page, it will not be available in Chromeleon.
If you are running the ICS-2000 without ICS-2000 control, enter the
cartridge serial number by touching the Serial Number field on the
ELUENT GENERATOR page (see Figure C-16) and entering the serial
number on the keypad.
If you are reinstalling a cartridge that was used previously, touch the
down arrow instead of the number field. A list of the last five entered
serial numbers drops down. Choose the serial number of the cartridge
from the list.
C.8.2 Setting the Eluent Concentration

To set the concentration of eluent to be generated, touch the Concentration
Setpoint field and enter the concentration on the keypad. The
concentration can be set from 0.0 to 100 mM, in 0.1 mM increments. The
suppressor type, EGC type, and flow rate determine the maximum eluent
concentration for a particular application. To determine the eluent
concentration for your application, refer to the column manual. Column
manuals are included on the Dionex Reference Library CD-ROM (P/N
053891), located in the ICS-2000 Ship Kit (P/N 057905).
C.8.3 Controlling the Eluent Generator Power

To manually control the eluent generator power, touch the EGC Off
and On buttons on the ELUENT GENERATOR page.
To automatically control the eluent generator power simultaneously
with the pump flow, select Automatically turn on with pump.
NOTE The eluent generator power always turns off when

the pump is off, regardless of whether the
Automatically turn on with pump option is
selected.
C-20 Doc. 031857-01 3/03

C.8.4 Monitoring the EluGen Cartridge Life

The Expiration Date displayed on the ELUENT GENERATOR page is
2 years from the date of manufacture. Although you can continue
operation with the cartridge after the expiration date, performance
will be impaired until a new cartridge is installed.
Life Remaining indicates the percentage of ions remaining in the
cartridge. The ion percentage is counted down in 1% increments.
Warning messages are displayed in the Chromeleon Audit Trail when
the percentage falls below 30%. At 0%, an error message informs you
that the ion count is depleted and the cartridge must be replaced
before continuing operation.
C.8.5 Controlling the CR-TC Power

To manually control the CR-TC power, touch the CR-TC Off and On
buttons on the ELUENT GENERATOR page (see Figure C-17).
To automatically control the CR-TC power simultaneously with the
pump flow, select Automatically turn on with pump.
NOTE The CR-TC power always turns off when the pump
is off, regardless of whether the Automatically turn
on with pump option is selected.
Figure C-17. Eluent Generator Page: CR-TC Controls
Doc. 031857-01 3/03 C-21

C.9 Suppressor Page

Use the SUPPRESSOR page to specify the type of suppressor installed in the ICS-
2000, turn the suppressor on and off, and select the amount of current supplied to
the suppressor. To open this page, touch the suppressor button on the HOME page,
or select SUPPRESSOR from the menu of pages.
Figure C-18. Suppressor Page
Suppressor Controls
The suppressor type is typically selected at initial installation and does not
need to be changed. However, if a different type of suppressor is installed
later (or if the suppressor is removed from the system), touch the Type field
and select the new suppressor type (None/MMS, SRS, or AES) from the list.
To set the current, touch the Current field and enter the desired setting (in
milliamperes) on the number pad.
The suppressor current setting to use depends on several variables: the
suppressor type, the column, the eluent, and the flow rate. Refer to the
suppressor manual for the recommended current setting for your application.
The suppressor manuals are included on the Dionex Reference Library CD-
C-22 Doc. 031857-01 3/03

NOTE If Chromeleon is used to control the ICS-2000, the

Program Wizard will automatically calculate the
current required for the application.
To manually control the suppressor power, touch the Off and On buttons.
To automatically control the suppressor power simultaneously with the pump
flow, select Automatically turn on with pump.
NOTE The suppressor always turns off when the pump is off,
regardless of whether the Automatically turn on with
pump option is selected.
C.10 Detector Page

Use the DETECTOR page to set the data rise time and to select parameters for
adjusting the analog output. To open this page, select DETECTOR from the menu
of pages.
Figure C-19. Detector Page
C.10.1 Setting the Data Rise Time

The data rise time determines the amount of filtering performed on the
conductivity data. The rise time is a measure of how quickly the detector
Doc. 031857-01 3/03 C-23

responds to a change in signal, and is defined as the time it takes the

output signal to rise from 10% of its final value to 90% of its final value.
The selected data rise time is used to filter both the digital data output,
which is sent to the computer and the PLOT page, and the analog data
output. The default rise time is 2 seconds.
Choosing an appropriate rise time value can optimize performance by
keeping the signal-to-noise ratio at a minimum level. A longer rise time
allows averaging of the noise frequencies, and subsequently, the baseline
will contain much less short-term noise. However, longer rise times may
have the following effects on peaks:
Peak shape will become asymmetric.
The peak maximum will be shifted.
The peak height will be reduced.
The rise time should be approximately 25% of the peak width at one- half
the height of the narrowest peak of interest.
For example, for a peak width of 5 seconds, calculate the rise time as:
(5 sec) 25% = 1.25 sec. Because 1.25 seconds is not one of the available
settings for rise time, select the next fastest rise time, 1 second.
To set the data rise time, touch the Data Rise Time field and select the
desired time from the list (see Figure C-19).
C.10.2 Selecting the Conductivity Polarity

To change the polarity of the conductivity data, touch the Conductivity
Polarity field. Select either Normal or Inverted. In applications in which
the analyte output is lower than the background conductance, the polarity
must be inverted to have peaks instead of dips on the chromatogram.
C.10.3 Setting Analog Out Options

The analog output connector on the ICS-2000 rear panel outputs an
analog voltage signal proportional to the conductivity measured by the
cell. The output is filtered using the selected data rise time (see
Section C.10.1). The analog output can be connected to an analog-to-
digital converter device, such as an integrator or a chart recorder.
C-24 Doc. 031857-01 3/03

The Analog Out options on the DETECTOR page (see Figure C-19) let
you configure the output for your application.
Output: Select Normal to output a signal corresponding to the offset
conductivity reading from the detector (see Conductivity Readings
on page C-9) and the selected Analog Out parameters. Use the other
two settings to calibrate an analog-to-digital converter device. Select
Zero to set the output signal to zero volts. Select Full Scale to set the
output signal to the full-scale voltage (1000 mV).
% Offset: To adjust the zero position of the analog output when it is
plotted, enter a percentage in the % Offset field. The value entered is
a percentage of the full-scale analog output. An offset allows a
recording device to plot the signal if it becomes negative. The offset
percentage does not affect the magnitude of the output signal.
Polarity: Select the polarity of the analog output signal: positive (the
default settings) or negative. In applications in which the analyte
output is lower than the background conductance, the polarity must
be negative to have peaks instead of dips on the chromatogram.
Range: Select the range in microSiemens (S) of a full-scale detector
response. For the ICS-2000, the full-scale voltage is 1000 mV. For
example, if the range is 100 S, then 1 S is equal to 10 mV from the
analog output. The range to use depends on the conductivity readings
expected for the application.
Doc. 031857-01 3/03 C-25

C.11 Information Page

The INFORMATION page displays the version numbers of the ICS-2000 control
programs (Moduleware and Boot Block), the serial number of the ICS-2000, and
the options that are installed in the ICS-2000. The INFORMATION page is
displayed at start-up. You can open the page from the menu of pages at any time.
Figure C-20. Information Page
Moduleware is the firmware program installed on the ICS-2000 that controls

instrument functions. Moduleware also sends status information and data to
Chromeleon and receives control parameters from Chromeleon.
The Boot Block is the first program to be executed when the ICS-2000 power is
turned on. It starts the Moduleware program.
C-26 Doc. 031857-01 3/03

C.12 Module Setup Page

The MODULE SETUP page lets you select options for the touch screen display and
conductivity readings. To open this page, select SETUP from the menu of pages.
Figure C-21. Module Setup Page
Module Setup Options

Backlight Duration: Select 2-hour time-out to turn off the backlight after 2
hours if the touch screen is not used during that time. Select Always On to
have the backlight remain on continuously.
Screen Time-out: If the touch screen is not used
during the selected time-out, the display will
change to show the screen selected from the list.
For example, if you select 5 min and BUSY, the
display will change to the BUSY page (see
Figure C-10) 5 minutes after the last time the
Change
touch screen was used. Select Never to always to screen
display the page that was used last. options
Conductivity Display: Select either Offset (the Time-out

options
default setting) or Total as the primary
conductivity display value. The selected value is
Doc. 031857-01 3/03 C-27

shown in large bold type on the HOME and STATUS screens, with the other
value in smaller type.
C.13 Input/Output Page

The INPUT/OUTPUT page provides control of the ICS-2000 TTL inputs and TTL
and relay outputs. To open this page, select INPUT/OUTPUT from the menu of
pages. For details about relay and TTL control, see Appendix D.
Figure C-22. Input/Output Page
C-28 Doc. 031857-01 3/03

C.14 Diagnostic and Calibration Pages

Diagnostic and calibration functions can be performed either from the touch
screen diagnostic and calibration pages or from the Chromeleon Wellness Panel.
To open a touch screen diagnostic or calibration page, select DIAGNOSTIC from
the menu of pages. The DIAGNOSTIC page opens (see Figure C-23). From there,
you can select the type of diagnostic or calibration to perform.
For detailed instructions on how to perform the various calibration and diagnostic
procedures, see Section 5.1.
Figure C-23. System Diagnostic Menu Page
NOTE The Service button provides access to service functions

that are performed only by Dionex personnel. An access
code is required.
Doc. 031857-01 3/03 C-29

C-30 Doc. 031857-01 3/03

NOTE The ICS-2000 Ion Chromatography System is designed

for use with IC (ion chromatography) and BioLC
applications and should not be used for any other
purpose. If there is a question regarding appropriate
usage, contact Dionex.
D.1 TTL and Relay Connections

A 12-pin connector strip for TTL/relay control is located on the ICS-2000 rear
panel. The connector provides two relay outputs, two TTL outputs, and four TTL
inputs (see Figure D-1).
Connector
Pin Function Position Description
1
1 Solid State Relay Contacts Output
RELAY 2
OUT 3
2 Solid State Relay Contacts Output
4
TTL OUT 1 5 TTL Output 1 (1 k pull up to +5, 100 mA sink)
(+) 2 6 TTL Output 2 (1 k pull up to +5, 100 mA sink)
1 7 TTL Input 1 Inject/Load
TTL IN 2 8 TTL Input 2 Autozero
(+) 3 9 TTL Input 3 Pump/Suppressor On
4 10 TTL Input 4 Mark
TTL GND 1 11 Ground Note: The TTL input
functions can be reassigned
(-) 2 12 Ground to different inputs.
Figure D-1. TTL and Relay Connector on Rear Panel
Relay loads in excess of 200 mA or with included power supplies over

60 V may damage the relay drivers on the CPU.
Doc. 031857-01 3/03 D-1

The outputs can be used to control functions in external devices such as an

autosampler or another Dionex module. When connected to a controlling device,
the inputs can be programmed to perform the following ICS-2000 functions:
Switch the injection valve position (load/inject)
Perform an autozero command (set the conductivity to zero)
Turn the pump on and off (also turns the suppressor on and off)
Send a chart mark signal to the analog output. The mark is 10% of the full-
scale voltage, and the duration is 0.5 seconds. A mark can be used, for
example, to indicate the injection.
Relay outputs 1 and 2 can be programmed to switch any low-voltage control.
Switched current must be less than 200 mA and 42 V peak.
Connecting a TTL or Relay

1. Locate the twisted pair of
wires (P/N 043598) and the
12-position connector plug Position 1
(P/N 923687) (see Locking
Figure D-2) in the ICS-2000 Screws
Position 12
2. Follow these basic steps to
connect the TTL or relays.
a. For each relay or TTL to Figure D-2. 12-Position Connector Plug
be used, connect an
active wire (red) and a ground wire (black) to the 12-position connector
plug at the appropriate pin locations. Refer to Figure D-1 or the label on
the ICS-2000 rear panel for the connector pin assignments.
To attach a wire to the plug, strip the end of the wire, insert it into the
plug, and use a screwdriver to tighten the locking screw. If necessary,
multiple ground wires can be attached to a single TTL input/output
ground pin.
connector.
b. Plug the connector into the 12-pin connector on the ICS-2000 rear panel.
D-2 Doc. 031857-01 3/03

c. Connect the wires from the ICS-2000 connector plug to the TTL or relay
connector pins on the other module(s). Additional connector plugs are
provided with other Dionex modules.
NOTE Check the polarity of each connection. Connect signal

wires to signal (+) pins and ground wires to ground (-)
pins.
3. If you connected a TTL input, verify that the correct function is assigned to
the input and that the correct input control type is selected. Select different
settings if necessary. Input functions and control types are assigned from
either the INPUT/OUTPUT touch screen page or Chromeleon (see
Section D.1.1).
D.1.1 Selecting TTL Input Functions and Control Types

To select TTL input functions and the control type from Chromeleon,
open the Chromeleon Server Configuration program and double-click the
ICS-2000 icon under the timebase. Select the TTL Inputs tab (see
Figure D-3).
Figure D-3. ICS-2000 Server Configuration Properties: TTL Inputs
Doc. 031857-01 3/03 D-3

To select TTL input functions and the control type from the touch screen,
go to the INPUT/OUTPUT touch screen page (see Figure D-4).
Select a
function
Select a
Control Type
Figure D-4. Input/Output Page: Selecting TTL Functions
TTL Input Control Types
The ICS-2000 TTL inputs respond to four types of

signals to accommodate different controlling devices.
The default control type, Normal Edge, is compatible with
the output signals provided by Dionex modules.
If the device connected to the ICS-2000 does not send a normal edge
signal, select the appropriate control type. Refer to the documentation
provided with the controlling device and the information below to select
the correct type.
Normal Edge: In normal edge
operation, the negative (falling)
edge of a signal turns on the
function. For example, for the
Load/Inject function, the
negative edge switches the
injection valve position to Load.
D-4 Doc. 031857-01 3/03

The action of the positive (rising) edge depends on the function: For
the Load/Inject function, the rising edge switches the injection valve
to the Inject position. For the Pump On function, the rising edge turns
off the pump (and suppressor). For Autozero and Mark, the rising edge
has no effect.
Inverted Edge: The inverted
edge mode works identically to
the normal edge mode except
that the positive and negative
edges are reversed in function.
Normal Pulse: In normal pulse

operation, the negative (falling)
edge of the TTL signal is the
active edge and the positive
(rising) edge is ignored.
A pulse width of 50 ms or more
is guaranteed to be detected. A pulse width of 4 ms or less is
guaranteed to be ignored. The action for pulse widths that are greater
than 4 ms and less than 50 ms is undefined.
Inverted Pulse: The inverted
pulse mode operates identically
to the normal pulse mode
except that the positive and
negative edges are reversed in
function.
D.2 Controlling TTL and Relay Outputs

The ICS-2000 provides two TTL outputs and two relay contacts for control of
functions in external devices, such as an integrator or autosampler. The relay
outputs can be used to switch any low-voltage control. Switched current must be
less than 200 mA and 60 V peak blocking. The relay-contact closures are
normally open. When the relay is closed, current flows to the connected device.
Relay loads in excess of 200 mA or with included power supplies over

60 V may damage the relay drivers on the CPU.
Doc. 031857-01 3/03 D-5

The TTL outputs are normally at 5 volts. Setting a TTL output to 0 volts turns on
the action in the connected device.
The TTL and relay output states can be controlled from Chromeleon, either by
issuing direct control commands from the Chromeleon control panel or by
including the commands in a control program. Figure D-5 shows an example relay
program command for controlling an AS40 autosampler.
Relay 1 turned on to start Relay 1 turned off after

the AS40 Load cycle and 138 seconds
load the sample loop
Figure D-5. Example Program for AS40 Control
To control the TTL and relay output states from the touch screen, select
INPUT/OUTPUT from the menu of pages. The INPUT/OUTPUT page appears (see
Figure D-4).
To set a relay, touch the relay field and select the desired state (Open or
Closed). For example, if Relay 1 is connected to the Load input on an AS40
autosampler, touch the Relay 1 field and select Closed to start the AS40 load
cycle.
To set a TTL outputs, touch the TTL field and select the desired state (5 Volts
or 0 Volts).
D-6 Doc. 031857-01 3/03

D.3 Example Setup for Stand-Alone Operation

This section describes an example setup for stand-alone operation (operation
without Chromeleon software) with an AS50 autosampler and a third-party
analog-to-digital converter and controller. If your configuration includes different
devices, use the following steps as guidelines and refer to your product
documentation for specific connection details.
Verify the AS50 Configuration

Refer to Section B.18.1 to verify that the AS50 meets the configuration
requirements for use with the ICS-2000.
Connect the AS50 Autosampler

Follow the instructions in Section B.18.2 to connect the AS50 autosampler to the
ICS-2000 injection valve.
Connect the TTLs and Relays
1. Locate two twisted pairs of
wires (P/N 043598) and 12-
position connector plugs Position 1
(P/N 923686) (see Locking
Screws
Figure D-6) in the ICS-2000
and AS50 Ship Kits.
Position 12
2. Attach the wires to the
connector plug positions
indicated in Figure D-7. Figure D-6. 12-Position Connector Plug
To attach a wire to a connector plug, strip the ends of the wire, insert into the
desired connector position, and tighten the locking screw with a screwdriver.
connector.
3. Plug the connector plugs into their respective TTL/Relay connectors on the
rear panel of each module.
Make sure the red wires connect to active (+) pins on each module and the
black wires connect to ground (-) pins.
Doc. 031857-01 3/03 D-7

ICS-2000 Rear Panel Connections AS50 Rear Panel Connections
+ ANALOG
- OUTPUT
TTL 2 OUT (+) TTL 1 IN (+)
TTL 1 OUT (+) TTL 2 IN (+)
1
1 TTL 3 IN (+)
RLY 2 OUT
RELAY 2 TTL 4 IN (+)
OUT RLY 1 OUT TTL
3
2 IN/OUT (-)
4
TTL OUT 1 5 1 2 3 4 5 6 7 8 9 10 11 12
red pos. black pos.
(+) 2 6 1,3,5,6 4,11,12,12
1 7 red: pos. 7,8,9
TTL IN 2 8
(+) 3 9 Inject
Pump On/Off
4 10 Autozero
TTL GND 1 11
(-) 2 12 black: Start/Continue Schedule
pos. 11,12,12
Start Acquisition
Analog Data Transfer
red black red black

ANALOG IN
RELAY OUT RELAY IN
Third-Party Analog-to-Digital Converter and Controller
System Function Connection

Inject AS50 TTL Out 1 to ICS-2000 TTL In 1
Autozero AS50 TTL Out 2 to ICS-2000 TTL In 2
Pump On/Off AS50 RLY Out 2 to ICS-2000 TTL In 3
Start Data Acquisition AS50 RLY Out 1 to Third-party DAC RLY In
Start/Continue Schedule Third-party ADC RLY OUT to AS50 TTL In 2
ICS-2000 TTL Inputs AS50 TTL Inputs

TTL IN 1 = Inject TTL IN 1 = (unassigned)
TTL IN 2 = Autozero TTL IN 2 = Start/Continue Schedule
TTL IN 3 = Pump On/Off TTL IN 3 = Tray/Temp. On/Off
TTL IN 4 = Mark TTL IN 4 = Therm. Compart. On/Off
Figure D-7. Example Connections for Stand-Alone Operation
D-8 Doc. 031857-01 3/03

Assign ICS-2000 Input Functions

Go to the ICS-2000 INPUT/OUTPUT touch screen page and verify that the Inject
function is assigned to TTL input 1, that Autozero is assigned to TTL input 2, and
that the TTL Input Control Type is Normal Edge (see Figure D-8).
Figure D-8. Input/Output Page
Enable AS50 Control of the Injection Valve

1. On the AS50 front panel, press Menu and 0 to go to the TIME FUNCTION OUT
screen. In the LOAD/INECT VALVE: TTL 1 field, select ENABLED.
TIME FUNCTION OUT

TTL
LOAD/INJECT VALVE: 1 ENABLED
LOAD/INJECT VALVE: 2 DISABLED
Help Prompt
Figure D-9. AS50 Time Function Out Screen
2. Turn the AS50 power off and then back on.

You can now issue commands from the AS50 to switch the ICS-2000
injection valve position.
Doc. 031857-01 3/03 D-9

Connect the Analog Output

1. Locate the analog cable for the third-party analog-to-digital converter and
controller.
2. Connect the analog input connector on the third-party controller to the
ANALOG OUTPUT connector on the ICS-2000 rear panel (see Figure D-7).
Configure the ICS-2000 Analog Output

Go to the ICS-2000 DETECTOR touch screen page and select the settings shown in
Figure D-10:
Figure D-10. Detector Page
Create an AS50 Method and Schedule

Figure D-11 is an example of AS50 method timed events that can be used with the
TTL/Relay connections shown in Figure D-7.
TIMED EVENTS METHOD:1

TIME VALVE CSV TTL1 TTL2 RLY1 RLY2
INIT LOAD
0.00 INJECT 1 1 1
0.50 0 0 1
Help Prompt
Figure D-11. Example AS50 Method for Stand-Alone Operation
D-10 Doc. 031857-01 3/03

Timed Event Notes:

At time INIT, the injection valve is set to Load.
At time 0.00, the injection valve is set to Inject, an autozero is performed
(TTL2=1), the data acquisition mark is sent (RLY1=1), and the pump is
turned on (RLY2=1).
At time 0.5, TTL2 and RLY1 are switched back to 0 to be ready for the next
run. RLY2 remains at 1 to keep the pump on.
TTL1 does not need to be set in the timed events because the Load and Inject
commands control the ICS-2000 injection valve automatically (see Enable
AS50 Control of the Injection Valve on page D-9).
To run the above method, set up an AS50 schedule. The example in Figure D-12
includes a four-point calibration (Lines 1 4) followed by two samples (Lines 5
and 6).
SCHEDULE EDIT 1 SAVE TO 1 RUN 1

MISSING VIAL ACTION: SKIP
VIAL# INJ/ INJ
LINE START- END VIAL VOL(uL) METHOD
1-4 1 - 4 3 25.0 1
5 5 - 5 1 25.0 1
6 6 - 6 1 5.0 1
Help Prompt
Figure D-12. Example AS50 Schedule for Stand-Alone Operation
Doc. 031857-01 3/03 D-11

D-12 Doc. 031857-01 3/03

E Reordering Information
Part Number Item

Reservoirs
046548 2-L plastic reservoir assembly (includes stopper and cap)
039164 4-L plastic reservoir assembly (includes stopper and cap)
Pump
057937 Primary pump head assembly
057938 Secondary pump head assembly
045721 Outlet check valve assembly, 10-32
045722 Inlet check valve assembly, 1/4-28
045994 Check valve cartridges
052840 Piston
055870 Piston seal
048722 Piston rinse seal
055752 O-ring for waste valve or priming valve
057945 Eluent valve
054578 10-cc syringe (for priming eluent lines)
Eluent Generator
058900 EluGen EGC II KOH cartridge (for anion separations)
058902 EluGen EGC II MSA cartridge (for cation separations)
058069 EGC holder and degas assembly
060080 CR-ATC (for anion separations)
060411 CR-CTC cation (for cation separations)
Sample Loop and Injection Valve

042857 25-L sample loop
Doc. 031857-01 3/03 E-1

Part Number Item

057968 Injection valve
024305 Luer adapter fitting, 1/4-28 (for manual injections)
016388 1-cc syringe (for manual injections)
057896 Injection valve rebuild kit
Suppressors, Cell, and Column Heater

056116 AAES Anion Atlas Electrolytic Suppressor
056118 CAES Cation Atlas Electrolytic Suppressor
053946 ASRS-Ultra 4-mm Anion Self-Regenerating Suppressor
053949 CSRS-Ultra 4-mm Cation Self-Regenerating Suppressor
057985 DS6 heated conductivity cell
058060 Column heater assembly
059979 Column heater heat exchanger, 0.25-mm (0.010-in) ID tubing
060943 Column heater heat exchanger, 0.125-mm (0.005-in) ID tubing
058062 Column heater cover assembly
Relay/TTL
923686 12-position connector plug
043598 Twisted pair of wires
Miscellaneous
954745 IEC 127 fast-blow fuses, rated 3.15 amps
060494 USB cable, 5 m (16 ft)
060392 External USB hub
058053 Leak detector
Maintenance Kits
055647 AS40/ASM preventive maintenance kit
060581 AS50 preventive maintenance kit
057954 ICS-2000 preventive maintenance kit
E-2 Doc. 031857-01 3/03

F FAQ
F.1 How do I hook up an autosampler?

For instructions on how to connect the ICS-2000 to an AS50 autosampler, see
Section B.18 of this manual. To connect an AS40, see Section B.19. Also see the
AS50 Autosampler Operators Manual (Document No. 031169) or the AS40
Automated Sampler Operators Manual (Document No. 034970). The manuals
are included on the Dionex Reference Library CD-ROM (P/N 053891), located in
the ICS-2000 Ship Kit (P/N 057905).
F.2 How do I print?

Click the Print toolbar button in Chromeleon (see Section 2.3).
F.3 Why are the retention times moving?

Retention times can shift if the pump flow is erratic or if the column or eluent is
contaminated. See Section 4.6 for pump flow rate troubleshooting. If a
contaminated column is suspected, clean the column as instructed in the column
manual. The column manual is included on the Dionex Reference Library CD-
F.4 How do I adjust retention times?

Retention times are calculated during calibration. The Use Recently Detected
Retention Time parameter in the Chromeleon QNT Editor (General tab) can be
used to compensate for some types of retention time drifts; for example,
evaporation of volatile components in pre-mixed solvents or an aging column.
Refer to the Chromeleon Help or users guide for details.
Doc. 031857-01 3/03 F-1

F.5 When should I remake standards?

Standards are used only for calibration and should always be made fresh (they
have a lifetime of only one week).
F.6 When should I replace the eluent generator cartridge?

The ICS-2000 monitors EluGen cartridge use and displays a message when it is
time to replace the cartridge. The message appears on the front panel screen and in
the Chromeleon Audit Trail. To view the remaining cartridge life, click EG
Settings on the Chromeleon control panel, or go to the touch screen ELUENT
GENERATOR page (see Section C.8).
F.7 How do I start Chromeleon?

Click Start on the Windows taskbar, and then select Programs >Chromeleon >
Chromeleon.
F.8 How do I delete data?

In the Chromeleon Browser, highlight the sequence you want to delete and then
select File >Delete.
F.9 How do I back up data?

In Chromeleon, select File >Export/Backup. Back up the data and indicate the
backup source.
F.10 How do I shut off the system?

In Chromeleon, click the System Shutdown button on the ICS-2000 Control
Panel (see Figure 2-12). On the ICS-2000, turn off the power switch on the rear
F-2 Doc. 031857-01 3/03

F FAQ
F.11 How do I store columns?

Columns should be stored in eluent. See the column manual for complete
instructions. The column manual is included on the Dionex Reference Library
F.12 How do I know when a column is dirty?

See the troubleshooting section of the column manual.
F.13 How do I clean a column?

See the troubleshooting section of the column manual.
F.14 Why is the conductivity high?

Possible reasons for high conductivity include:
The suppressor needs regeneration. See the suppressor manual for
troubleshooting information. The suppressor manual is included on the
Dionex Reference Library CD-ROM (P/N 053891), located in the ICS-2000
The cell is out of calibration. See Section 5.1.3 for calibration instructions.
See Section 4.12 for additional troubleshooting information.
Doc. 031857-01 3/03 F-3

F-4 Doc. 031857-01 3/03

G Glossary
Analytical Column
Synonymous with Separator Column.
Band Spreading
The broadening of the sample band as it travels through the column. Band
spreading can also occur in the injection valve, detector cell, and interconnecting
tubing.
Calibration Curve
A graph showing detector response in peak height or area versus analyte
concentration.
Capacity Factor (k)
The number of column volumes of eluent, pumped through the column, required
to elute an analyte. Capacity factor is a dimensionless measure of retention which
is independent of column length or eluent flow rate. It is calculated as follows:
tr to
k = -------------
-
to
Where: tr = retention time

to = retention time of unretained solute (column void volume)
Doc. 031857-01 3/03 G-1

Cell Constant (k)

A factor determined experimentally by measuring the conductance (G) of a
standard solution of known equivalent conductivity (k).
k = G
The value of k depends upon the surface area of, and distance between, the
electrode faces in the conductivity detector cell.
k = lA
Where: l = length
A = area of one electrode (the other electrode is equal to
the first)
Channeling
The preferential flow of liquid along more open, less resistant paths through the
column packing. This causes Band Spreading.
Column Efficiency (N)
A measure of the narrowness of analyte bands as they elute from the column.
High efficiency is desirable because resolution between closely spaced bands
improves with greater efficiency. For a symmetrical (Gaussian) peak, column
efficiency can be determined by the following:
N = 5.54(t1/W1/2)2
Where: t1 = the peak retention time (in seconds)
W1/2 = the peak width at 1/2 height (in seconds)
Column efficiency is proportional to column length: for a given resin and column
diameter, increasing the column length increases the column efficiency.
Synonymous with Theoretical Plates.
Column Selectivity (a)
Describes the relative separation of the band maxima between two adjacent peaks.
Selectivity can be determined by the following:
a = (t2 - t0)/(t1 -t0)
Where: t1 and t2 = retention time of components 1 and 2, respectively
t0 = retention time of unretained components (void volume)
Concentrator Column
A short column used to retain and concentrate analytes from a measured volume
G-2 Doc. 031857-01 3/03

G Glossary
of relatively clean sample. This allows large volumes of sample to be injected,

lowering concentration detection limits.
Conductivity
A measure of the ease with which electrical current flows through a liquid
contained between two opposite charged electrodes. Conductivity is a
characteristic of ions in solution. Units are siemens.
Counterion
Ions carrying a charge opposite that of the sample ions (e.g., Na+) may be the
counterion of a Cl- analyte. These ions preserve electrical neutrality in solution.
% Crosslink
Divinylbenzene content in a polystyrene/divinylbenzene (PS-DVB) resin; this
contributes to the mechanical strength of the resin and determines
chromatographic properties.
Equivalent Conductivity ()
The contribution of an ionic species to the total conductivity of a solution as
measured in a standard cell having electrodes 1 cm2 in area and exactly 1 cm
apart.
Guard Column
A small column that prevents poisoning of the separator column by sorbing
organic contaminants and removing particulates. It is filled with the same packing
as the separator column. Synonymous with Pre-Column.
HETP (H)
Height Equivalent to a Theoretical Plate. A measure of column efficiency which
allows comparison between columns of different lengths.
HETP = H = L/N
Where: L = the column length (in mm)
N = the number of theoretical plates
Ion-Exchange Capacity
The number of active ion exchange sites in a given weight or volume of resin; this
is usually expressed in meq/g or meq/mL.
Ion-Exchange Resin
An insoluble polymer matrix containing fixed-charge exchange sites (anionic or
cationic). IC resins are formed into small spherical particles (beads).
Doc. 031857-01 3/03 G-3

Packing
The material that fills a chromatographic column; usually a resin or silica-based
material.
Pellicular Resin
A resin with a solid, nonporous core coated with a thin layer of more porous
material. The exchange sites of pellicular ion exchange resins are located only on
the surface layer of the bead. These resins have a low ion-exchange capacity.
Pre-Column
Synonymous with Guard Column.
Regenerant
A dilute acid or base that converts ion exchange sites in a MicroMembrane
Suppressor back to the form that suppresses the eluent conductivity.
Resin
See Ion-Exchange Resin.
Resolution (R)
A measure of the separation between two sample components. This is expressed
as the ratio of the distance between the two peak maxima to the mean value of the
peak width at the baseline.
R = 2(t2 - t1)/(W2 + W1)
Where: t1 and t2 =the retention times of components 1 and 2,
respectively
W1 and W1 = the baseline width of peaks 1 and 2,
respectively (measured in the same units as the retention
time)
R is proportional to the square root of efficiency (N). A value of R = 1.5
represents baseline separation of the two peaks.
Retention Time
The time from injection to peak maximum; the basis for identification of a species
in chromatographic analysis.
Separator Column
The column used to perform a chromatographic separation; also called an
analytical column.
G-4 Doc. 031857-01 3/03

G Glossary
Siemens (S)
Unit measure of conductance; the reciprocal of the electrical resistance of a
solution.
Suppressor
A device used to minimize eluent conductivity and convert sample species to a
common form, thus increasing detection sensitivity.
Temperature Coefficient
The percent of change in the conductivity of a solution with a 1 oC change in
temperature. Every solution has a characteristic temperature coefficient which is
determined experimentally.
Theoretical Plates (N)
See Column Efficiency.
Void Volume (V0)
The volume occupied by the eluent in a packed column. This volume includes the
volume between the injection valve and the column, as well as between the
column and the detector cell. Unretained components are eluted in the void
volume.
Doc. 031857-01 3/03 G-5

G-6 Doc. 031857-01 3/03

Index
Symbols Audit Trail, 2-19

Automated control, 2-14
% Offset (analog out), C-25 Autosampler
Sample injection, 3-18
See also AS40 Automated Sampler
A See also AS50 Autosampler
Adjusting the contrast, 2-2, C-1 Autozero, 2-20, 3-13, 3-20, C-9
Air particulate samples, 3-14
Air regulator, B-63 B-64
Alarm conditions, 4-3 4-7, 4-9 4-12 B
See also Error messages
Background conductivity
Ambient temperature, 4-24
High, 4-23
Analog output, C-24 C-25, D-2
Offsetting, 3-13, C-9, C-11
% Offset, C-25
Backlight
Configuring, C-25, D-10
Time-out, C-28
Connections, D-10
Backpressure, 2-26
Connector, 2-10
Restriction in plumbing, 5-11
Full scale, C-25
Troubleshooting, 4-20
Range, C-26
Bar, C-17
Analog-to-digital controller, D-10
Baseline
Anion separations, 2-27, 3-13
Drift, 4-24
Applications, 3-6, D-1
Equilibration, B-55
AS40 Automated Sampler
Noise, 4-24, C-24
Installation, B-60
Stability, 2-32
Zeroing, C-9
Yearly maintenance, 3-24
Batch processing, 3-2
AS50 Autosampler
Starting, 3-22
Connections for stand-alone operation, D-7
See also Sample processing
Enabling injection valve control, B-59, D-9
Blockages
Installation, B-56
Liquid lines, 4-10, 5-11
Method for stand-alone operation, D-10
Bottle
See Reservoir
Schedule for stand-alone operation, D-10
Time Function Out screen, B-59, D-9
Atlas Electrolytic Suppressor, 2-9
See also Suppressor
Doc. 031857-01 3/03 Index-1

Browser, 2-15, 3-5, B-67 Toolbars, 2-14, 3-20

Busy page, C-28 Using the touch screen with Chromeleon,
C-4
Verifying communication, B-53
C Wellness Panel, 5-1
Chromeleon Server
Cables Starting, 3-4, B-13
AS40 Relay Control, B-60 Chromeleon Server Configuration program
Power cord, 5-37 Starting, B-13
USB, B-9 Timebase, B-15
Calibration, 5-1 Column heater, 2-8, 2-31
Conductivity cell, 5-5 Home page control, C-9
Flow rate, 5-8 Replacement procedure, 5-29
Vacuum degas assembly, 5-10 Specifications, A-4
Cartridges (eluent generator), 2-27 Column heater alarms
See also EGC Column heater exceeds safe temperature,
Cation separations, 2-27, 3-13 4-3
Cell Column heater open circuit, 4-3
See Conductivity cell Column heater short circuit, 4-3
Cell calibration, 5-5 Columns, 2-8
Cell drive, A-3 Cleaning, F-3
Cell heater, C-10 Contaminated, 4-22
Check valves Damage from IPA, 5-36
Cleaning procedure, 5-16 5-17 Installing, B-19
Replacement procedure, 5-16 5-17 Storing, F-3
Chromatogram, 1-3 Commands
Zeroing the baseline, C-9 Chromeleon, 2-14, 3-21, B-52
Chromeleon, 2-14 Component panel, 2-7
Adding devices to a timebase, B-16 Computer
Alarm conditions, 4-3 Connections, B-9
Browser, 2-15, 3-5 Operating system requirements, B-5
Control Panel, 2-14, 3-20 Unpacking, B-4
Creating a sequence, 3-21 Concentration, C-21
Degas options, 4-25 Upper limits, 4-6, C-21
Direct control, 2-14 See also EGC
Error messages, 4-3 Conductivity, C-9
Installation, B-5, B-13 Causes of high conductivity, F-3
Interface, 2-14 Changing the display, C-28
License installation, B-5 B-6 Offset, C-9, C-28
Menu, 2-14, 3-20 Temperature effect, 2-32
Programs, 2-14, 2-18, 3-18 3-21 Total, C-9, C-28
Starting, 3-4, B-44
System properties dialog box, B-16
Timebase, 3-5
Index-2 Doc. 031857-01 3/03

Index
Conductivity cell, 2-9, 2-32 Deleting, F-2

Calibrating, 5-5 Filtering, C-24
Calibration constant, 5-26 Saving, 3-20 3-21
High cell output, 4-23 Data acquisition, 3-20
Leaking, 4-14 Data analysis description, 1-3
No response, 4-23 Data rise time, B-62, C-24 C-25
Replacement procedure, 5-25 Decibel level, A-1
Setting the temperature, C-10 Degas tubing assembly
Specifications, A-3 See Vacuum degas assembly
Volume, 2-32 Degas calibration failed alarm, 4-5
Conductivity cell specifications Degas tubing assembly, eluent generator, 2-13,
Active volume, A-3 2-27 2-28
Cell body, A-3 Degassing eluents, 2-22
Electrodes, A-3 Delay volume, A-2
Maximum pressure, A-3 Detection description, 1-3
Conductivity polarity, C-25 Detector controls on Home page, C-9
Contacting Dionex, 5-1 See also Conductivity cell
Contamination Detector page, C-24
Column, 4-21 4-22 Setting analog out options, C-25
Eluents, 4-21 Setting the data rise time, C-24
Sample, 4-22 Detector specifications
Standard, 4-21 Cell drive, A-3
Continuously Regenerated Trap Column Linearity, A-3
See CR-TC Range, A-3
Control Panel, 2-14, 2-16, 3-20 Temperature compensation, A-3
System Panel, 2-16 Diagnostic pages, C-30
Wellness Panel, 2-16 Diagnostics, 5-1
CR-TC, 2-28 Dimensions, A-1
Connector, 2-6 Dionex
Controlling automatically, C-22 Contacting, 5-1
Controlling manually, C-22 Direct control, 2-14
Home page control, C-7 Dongle, B-6
Replacement, 5-46 Drip tray, 2-8
CR-TC alarms DS6 Heated Conductivity Cell
CR-TC over current error, 4-4 See Conductivity cell
CR-TC stopped for zero flow rate, 4-4 Duty cycle, 2-23, C-19
Current, C-22
D
Daily maintenance, 3-23
Data
Backing up, F-2
Doc. 031857-01 3/03 Index-3

E Installation, B-29
Setting the concentration, C-21
EGC, 2-6, 2-27 Specifications, A-4
Concentration upper limits, 4-6, C-21 Eluent Generator page, C-19
EGC-1 connector, 2-6, 5-43, B-37 Eluent level, 3-7, B-53, C-7
Entering the serial number, C-20 Eluent reservoir
Expiration date, C-21 Connecting, 3-9, B-25
Home page controls, C-7 Filling, 3-7
Installation, B-29 Gas connection, B-63
Life remaining percentage, C-21 Monitoring liquid level in, 3-7, B-53, C-7
Service area, 2-6 Pressurization, B-64
Vent line installation, B-38 Storage on top cover, 2-6
EGC alarms Eluent valve, 2-8, B-26, C-19
EGC board not present, 4-5 Replacing, 5-33
EGC-1 calibration error, 4-5 EluGen cartridge
EGC-1 disconnected error, 4-6 See EGC
EGC-1 invalid concentration vs flow rate End-line filter
error, 4-6 See Filter, end-line
EGC-1 invalid flow rate error, 4-6 Environmental specifications
EGC-1 over-current, 4-7 Humidity, A-1
EGC-1 over-voltage, 4-7 Operating pressure, A-1
EGC Resistive Load, 5-4 Operating temperature, A-1
EGC Verification, 5-4 Equilibration time, 3-13
EGC-1 connector, 2-6, 5-43, B-37 Error messages, 4-3 4-12
EGC-2 connector (reserved for future use), 2-6 Column heater exceeds safe temperature,
Elapsed time, C-9, C-11 4-3
Electrical specifications Column heater open circuit, 4-3
Fuses, A-1 Column heater short circuit, 4-3
Main power, A-1 CR-TC over current error, 4-4
Eluent CR-TC stopped for zero flow rate, 4-4
Aqueous, 3-24, 4-17 Degas calibration failed, 4-5
Concentration, C-21 EGC board not present, 4-5
Degassing, 2-22 EGC-1 calibration error, 4-5
Delivery process, 1-2 EGC-1 disconnected error, 4-6
Filtering, 3-7 EGC-1 invalid concentration vs flow rate
See also Eluent generator error, 4-6
Eluent bottle EGC-1 invalid flow rate error, 4-6
See Eluent reservoir EGC-1 over-current, 4-7
Eluent generator, 2-6, 2-27 EGC-1 over-voltage, 4-7
Cartridge holder, 2-27, B-31 Hardware not present, 4-7
Cartridge replacement procedure, 5-38 Leak sensor wet, 4-7
Controlling automatically, C-21 Load/inject valve error, 4-9
Controlling manually, C-21 Option not installed, 4-9
Degas tubing assembly, 2-13, 2-27 2-28 Pressure slope calibration error, 4-9
Index-4 Doc. 031857-01 3/03

Index
Pump motor lost control, 4-9 Ghosting, 4-21

Pump over pressure, 4-10 Guard column, 2-8, B-19
Pump pressure hardware error, 4-10 Installation, B-20
Pump under pressure, 4-11
Suppressor not connected, 4-12
Suppressor over current, 4-11
Suppressor over power, 4-12
H
Suppressor stopped for zero flow rate, 4-12 Hardware not present error, 4-7
Heater
Column, 2-31
High pressure alarm, 4-10
F High pressure limit, A-2
Facility requirements, B-1 Home page, 2-2, C-1, C-6 C-7, C-9 C-10
Filter, end-line Column Heater control, C-9
Bacterial contamination, 3-24, 4-17 Detector controls, C-9
Dirty or clogged, 3-24, 4-16 EGC controls, C-7
Installation, 3-7 Injection valve controls, C-9
Filtering data, C-24 Pump controls, C-6
Fittings Humidity limits, A-1
Leaking, 4-13
Replacing, 5-14
Requirements, 5-14 I
Flow rate, 2-8, A-2, C-6
Information page, C-27
Calibration, 5-8
Injecting samples, 3-16
Via autosampler, 3-18
Flow schematic, 2-12
Via syringe, 3-17
FROM PC
Via vacuum syringe, 3-18
USB connections, B-9
Injection port, 2-1
Front panel, 2-1
Specifications, A-2 Injecting via syringe, 3-17
See also Touch screen Injection valve, 2-8, 2-29
Full-scale analog output, C-25 Controlling with an AS50, B-59, D-9
Fuses Home page controls, C-9
Replacement procedure, 5-37 Leaking, 4-14
Requirements, A-1 Plumbing connections, 2-29
Rebuilding, 5-15
Specifications, A-3
G Input/Output page, C-29, D-9
Gas separator waste tube, B-23
Gas source
Connection, B-63
Installation, B-63
Pressure requirement, B-63
Doc. 031857-01 3/03 Index-5

Installation, B-1 B-69 Ion exchange, 1-3

Adding devices to a timebase, B-16 Isopropyl alcohol, 5-36
Analog output connection, D-10
AS40 autosampler, B-60
AS50 Autosampler, B-56
Assigning devices to a timebase, B-15
K
Assigning USB devices, B-14 Key code (Chromeleon), B-6
Chromeleon, B-5, B-13 KOH
Columns, B-19 EluGen cartridge, 2-27
Computer, B-4
EGC vent line, B-38
Eluent generator, B-29 L
Eluent reservoir, B-25, B-64 LCD screen, 2-1 2-2, C-1
Equilibrating the system, B-54 Specifications, A-2
Gas separator waste tube, B-23 See also Touch screen
Gas source, B-63 Leak sensor, 2-8
Guard column, B-20 Leak sensor wet alarm, 4-7
Key code, B-8 Replacement, 5-35
Operating system requirements, B-5 Leaks
Operational status verification, B-55 Cell, 4-14
PC connections, B-9 Fittings, 4-13
Plumbing, B-25 Injection valve, 4-14
Power connection, B-11 Liquid, 4-13
Priming, B-25 B-28 Pressure transducer, 4-14
Separator column, B-20 Pump check valve, 4-13
Software license, B-5 B-6 Pump head, 4-14
Stand-alone operation setup, D-7 D-8 Pump head waste valve, 4-14
Starting the ICS, B-12 Pump piston seal, 4-14
Suppressor, B-21 Suppressor, 4-14
TTL and relay connections, D-1 D-2 LED, A-2
Unpacking, B-2 License (Chromeleon), B-5 B-6
USB connections, B-9 B-10 License server (Chromeleon), B-6
Waste lines, B-23 Linearity requirements, A-3
Installation troubleshooting, B-69 Liquid leaks, 4-13
Installed options, C-27 See also Leaks
Inverted edge TTL input control, D-5 Load/inject valve alarm, 4-9
Inverted peaks, C-25 Loading samples, 3-16
Inverted pulse TTL input control, D-5 Local Mode, C-10
Ion chromatography Locked Remote mode, C-4
Overview, 1-1 Loop
See Sample loop
Index-6 Doc. 031857-01 3/03

Index
Low pressure limit, A-2 Operating system requirements, B-5

Operating temperature, A-1
Operation
M Equilibration time, 3-13
Overview, 3-1
Main power receptacle, 2-11 Priming, 3-10, 5-36, B-28
Maintenance, 3-23 Reservoir setup, 3-6
Daily, 3-23 Sample preparation, 3-14
Ongoing, 3-23 Sample processing, 3-2
Weekly, 3-24 Setting operating conditions, 3-11
Yearly, 3-24 Starting Chromeleon, 3-4
Manual sample processing, 3-2 System power-up, 3-3
Methanesulfonic acid (MSA) Operational status verification, 3-13
EluGen cartridge, 2-27 Option not installed error, 4-9
MicroMembrane Suppressor, 2-9 Options installed, C-27
See also Suppressor Oven
Module Setup page, C-28 See Column heater
Moduleware, C-27 Overview, 1-4
MPa, C-17
MSA
EluGen cartridge, 2-27
P
Panels
N Chromeleon Control Panel, 2-14, 3-20
Chromeleon Wellness Panel, 5-1
Nitrite in samples, 3-14
Component panel, 2-7
Noise, baseline, C-24
Parameters
Normal edge TTL input control, D-4
Chromeleon operating commands, 2-14,
Normal pulse TTL input control, D-5
3-21, B-52
PC
See Computer
O Peak ghosting, 4-21
Offset conductivity, C-28 Peak height
Offset percentage (analog out), C-25 Effect of rise time on, C-25
Offsetting background conductivity, 3-13, C-9 Reproducibility, 2-32
Operating features, 2-1 Troubleshooting, 4-22
Operating pressure, A-1 Peak shape, C-24
Operating ranges Peak width, C-25
Cell heater, 2-9, C-10 Peaks
Column heater, 2-8, C-9 Effect of rise time on, C-24
Eluent concentration, 4-6, C-21 Extraneous (ghosting), 4-21
Flow rate, 2-8, C-6 Inverted, C-25
Reversed, C-25 C-26
Doc. 031857-01 3/03 Index-7

PEEK Pressurizing
Conductivity cell body, 2-32 Eluent reservoir, B-64
Physical specifications Prime button, C-7
Decibel level, A-1 Priming, 3-10, 5-36, B-25 B-28
Dimensions, A-1 Pump is out of prime, 4-16
Weight, A-1 With a syringe, B-26
Piston seals With isopropyl alcohol, 5-36
Replacement procedure, 5-18 5-19, With the Prime button, B-28
5-21 5-22 Priming valve
Pistons Opening, 2-25
Replacement procedure, 5-22 O-ring replacement procedure, 5-23
Plot offset, C-11 Printing, F-1
Plot page, C-10 C-11 Processing samples, 3-2, 3-20 3-21
Elapsed time, C-11 Automatically (batch), 3-2, 3-21
Plot offset, C-11 Manually, 3-2, 3-20
Range, C-11 Product warranty, 5-1
Plotting detector output, 2-21, C-11 Programs (Chromeleon), 2-14, 2-18, 3-18
Plumbing 3-21
Columns and suppressor, B-25 Run time, 2-18
Injection valve, 5-15 PSI, C-17
Replacing tubing and fittings, 5-14 Pulse damper, 2-13, 2-26
Troubleshooting, 5-11 Pump, 2-24
Polarity Flow rate, 2-8, C-6
Selecting the conductivity polarity, C-25 Home page controls, C-6
Potassium hydroxide Leaks, 4-14
EluGen cartridge, 2-27 Operating pressure, A-2
Power Over pressure alarm, 4-10
Turning on, 3-3, B-12 Primary pump head, 2-24
Power cord, 5-37, B-11 Priming, 3-10, B-25
Power receptacle, 2-11, B-11 Priming problems, 4-15
Power requirements, A-1 Secondary pump head, 2-25
Power-up conditions, 3-3 Selecting the pressure unit, C-17
Pressure Setting pressure limits, C-17
Home page display, C-6 Troubleshooting, 4-17
Limit, 4-11, C-6, C-17 Under pressure alarm, 4-11
Pump operating specifications, A-2 Pump check valve leaking, 4-13
System, 4-10 4-11, C-17 Pump components, 2-24
Unit (selecting), C-17 Pump degas
Pressure ripple, A-2 See Vacuum degas assembly
Pressure slope calibration error, 4-9 Pump head waste valve
Pressure transducer, 2-8, 2-26 Leaking, 4-14
Leaking, 4-14 O-ring replacement procedure, 5-23
System backpressure, 2-26
Index-8 Doc. 031857-01 3/03

Index
Pump heads, 5-16 Reverse peaks, C-25

Pump motor lost control alarm, 4-9 Rise time, C-24
Pump page, C-16 Run time, 2-18
Changing the pressure unit, C-17 Running samples, 3-20
Setting degas parameters, C-18 See also Processing samples
Setting pressure limits, C-17
Pump pressure hardware error, 4-10
Pump priming valve
O-ring replacement procedure, 5-23
S
Pump specifications Safety messages, 1-6
Flow rate, A-2 Sample loop, 2-8, 2-29
Operating pressure, A-2 Changing, 5-14
Type, A-2 Injecting, 2-29
Injection valve connections, 2-29, 5-15
Loading, 2-29
Reordering, E-1
R Sample processing, 3-2, 3-20 3-21
Range, C-11, C-26 Batch, 3-2, 3-21
Rear panel, 2-10 Manual, 3-2, 3-20
Analog output connector, 2-10 With Chromeleon, 3-20 3-21
Power receptacle, 2-11 Samples
USB connections, 2-10 Collecting and storing, 3-14
Rebuilding the injection valve, 5-15 Diluting, 3-15
Recorders Filtering, 3-14
Analog output setting, C-26 Injecting, 3-16, 3-18
Relay connections Loading, 3-16
AS40, B-60 Pretreating, 3-14
Rear panel connector, 2-11, D-1 Saving data, 3-20 3-21
Relay outputs Schematic
Controlling, D-5 Flow, 2-12
Voltage and current specifications, D-2 Seal replacement, 5-19, 5-21 5-22
Remote Mode, C-10 Selectivity
Reordering information, E-1 Troubleshooting, 4-22
Reproducibility, 2-32 Self-Regenerating Suppressor, 2-9
Reservoir See also Suppressor
Connecting, 3-9 Separation process, 1-3
Filling, 3-7 Separator column, 2-8, B-19
Monitoring liquid level in, 3-7, B-53 Installation, B-20
Storage on top cover, 2-6 Sequence, 2-14
Restriction in liquid lines, 4-10, 5-11 Creating, 3-21
Retention time Sequence Wizard, 3-21
Adjusting, F-1 Serial number, B-16
Moving, F-1 EluGen cartridge, 5-44, C-19 C-20
Doc. 031857-01 3/03 Index-9

Server Configuration program Standards

AS50 configuration properties, B-18 When to remake, F-2
Starting, 3-4, B-13 Starting Chromeleon, B-44
Timebase, B-15 Status page, C-10, C-12
Server Monitor, B-6 Sulfite in samples, 3-14
Service chase, 2-6, 2-9 Suppression description, 1-3
Service procedures, 5-17 Suppressor
Check valve cleaning, 5-16 5-17 Controlling the current to, 2-21, C-22
Check valve replacement, 5-16 Description, 2-9, 2-32
Conductivity cell replacement, 5-25 Installation, B-21
CR-TC replacement, 5-46 Leaking, 4-14
Eluent generator cartridge replacement, Replacement procedure, 5-28
5-38 Selecting the type, C-23
Fuse replacement, 5-37 Suppressor alarms
Injection valve rebuilding, 5-15 Suppressor not connected, 4-12
Isolation of liquid lines restriction, 5-11 Suppressor over current, 4-11
Leak sensor replacement, 5-35 Suppressor over power, 4-12
Piston replacement, 5-22 Suppressor stopped for zero flow rate, 4-12
Piston seal replacement, 5-18 Suppressor page, C-22
Priming valve O-ring replacement, 5-23 Syringe injection, 3-17
Rebuilding the injection valve, 5-15 Vacuum, 3-18
Replacing tubing and fittings, 5-14 System
Suppressor replacement, 5-28 Shutdown, 2-18, F-2
Tubing and fittings replacement, 5-14 Startup, 2-18, 3-3
Waste valve O-ring replacement, 5-23 Status, 3-13
Sharable device, B-17 System backpressure, 2-26
Signal-to-noise ratio, C-24 System components
Software license, B-5 B-6 Descriptions, 2-22
Specifications System Control Panel, 3-5, B-67
Column heater, A-4 See also Control Panel
Conductivity cell, A-3 System overview, 1-4
Electrical, A-1 System properties dialog box, B-16
Eluent generator, A-4
Environmental, A-1
Injection valve, A-3
LCD touch screen, A-2
T
Physical, A-1 Technical Support, 5-1
Pump, A-2 Temperature
Vacuum degas assembly, A-3 Cell heater, 2-32, C-10
Stand-alone operation, B-59, D-7 D-10 Column heater, 2-8, 2-31, C-9
Analog output connection, D-10 Minimizing the effect of variations, 2-32
AS50 setup, B-59, D-9 D-10
Example connections, D-8
TTL and relay connections, D-7
Index-10 Doc. 031857-01 3/03

Index
Temperature compensation, 2-32, A-3 Peak ghosting, 4-21

Time, 2-18 Peak height, 4-22
Timebase (Chromeleon), 3-5 Pump, 4-15 4-17
Adding devices to a timebase, B-16 B-17 Retention time, 4-22
Assigning the ICS to a timebase, B-13 Selectivity, 4-22
B-15 Vacuum degas assembly, 4-25
Time-out (screen), C-28 TTL and relay connector, D-1
TO MODULE Connection instructions, D-2
USB port connections, B-10 Pin assignments, D-1
Top cover, 2-6 TTL inputs
Total conductivity, C-9, C-28 Assigning functions to, D-4, D-9
Touch screen, 2-1, C-1 Control type, D-9
Adjusting the contrast, 2-2, C-1 Default function assignments, D-2
Number keypad, 2-3, C-2 Rear panel connector, 2-11
Operation, 2-2, C-1 TTL outputs
Specifications, A-2 Controlling, D-5
Time-out, C-28 Rear panel connector, 2-11
Using with Chromeleon, C-4 Tubing
Touch screen pages Replacing, 5-14
Busy page, C-28 Requirements, 5-14
Detector page, C-24 Routing clips, 2-11
Diagnostic pages, C-30 Tubing connections
Eluent Generator page, C-19 Isolating a restriction, 4-10, 5-11
Home page, 2-2, C-1, C-6, C-9 C-10 TUV, 1-8
Information page, C-27
Input/Output page, C-29, D-9
Module Setup page, C-28
Overview, C-5
U
Plot page, C-10 C-11 Unassigned USB Devices, B-13
Pump page, C-16 Unpacking, B-2
Status page, C-10, C-12 Computer, B-4
Suppressor page, C-22 USB cable, B-10
Troubleshooting, 4-1 USB connections, 2-10, B-9 B-10
Alarm conditions, 4-3 Unassigned devices, B-13
Baseline noise or drift, 4-24
Calibrations, 5-1
Diagnostics, 5-1
Error messages, 4-3
Excessive backpressure, 4-20
Flow rate, 4-18
High cell output, 4-23
Installation, B-69
Liquid leaks, 4-13
No cell response, 4-23
Doc. 031857-01 3/03 Index-11

V
Vacuum degas assembly, 2-22
Calibration, 5-10
Components, 2-22
Fails to run, 4-25
Setting operating parameters, C-18
Specifications, A-3
Valve
See Eluent valve
See Injection valve
Version number, C-27
W
Warranty, voiding, 5-1
Waste container, 5-49
Waste lines
Blocked, 4-13
Connection, B-23
Connection to AS50, B-58
Waste valve, 2-25
Opening, 2-25, 5-18
O-ring replacement procedure, 5-23
Water samples, 3-14
Weekly maintenance, 3-24
Weight, A-1
Wellness Panel, 2-16, 5-1
Y
Z
Zero position (analog out), C-25
Zeroing the baseline, C-9
Index-12 Doc. 031857-01 3/03

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What is ion chromatography?

What is ion chromatography?

What are the main components of the ICS-2000 system?

What are the main components of the ICS-2000 system?

ICS-2000 ION CHROMATOGRAPHY SYSTEM

2003 Dionex Corporation

Document No. 031857

Doc. 031857-01 3/03 i

2.4.4 Eluent Generator . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 2-27

3 Operation and Maintenance

ii Doc. 031857-01 3/03

3.10.1 Loading Samples with a Syringe . . . . . . . . . . . . . . . . . . . . . .3-17

Doc. 031857-01 3/03 iii

4.14 Vacuum Degas Assembly Does Not Run . . . . . . . . . . . . . . . . . . . . . . 4-25

iv Doc. 031857-01 3/03

5.17 Replacing the Eluent Generator Cartridge . . . . . . . . . . . . . . . . . . . . .5-38

Doc. 031857-01 3/03 v

B.5 Connecting the ICS-2000 to the Chromeleon PC . . . . . . . . . . . . . . . . .B-9

vi Doc. 031857-01 3/03

B.14 Setting Up a Chromeleon Application . . . . . . . . . . . . . . . . . . . . . . . B-44

C Touch Screen Operation

Doc. 031857-01 3/03 vii

C.4.2 Home Page EGC Controls . . . . . . . . . . . . . . . . . . . . . . . . . . . .C-7

viii Doc. 031857-01 3/03

C.11 Information Page . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . C-27

D TTL and Relay Control

Doc. 031857-01 3/03 ix

F.11 How do I store columns? . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . F-3

x Doc. 031857-01 3/03

1.1 Introduction to Ion Chromatography (IC)

Doc. 031857-01 3/03 1-1

A typical IC analysis consists of 6 stages (see Figure 1-1).

Figure 1-1. Ion Analysis Process

1-2 Doc. 031857-01 3/03

Doc. 031857-01 3/03 1-3

1.2 Overview of the ICS-2000

1-4 Doc. 031857-01 3/03

1.3 About This Manual

Chapter 1 Introduces ion analysis and the ICS-2000; explains the

Chapter 4 Lists problems and presents step-by-step procedures for

Chapter C Describes the operating features available from the front

Appendix D Describes the ICS-2000 TTL and relay control features.

Appendix E Lists spare parts for the ICS-2000.

Appendix F Provides answers to frequently asked questions about

Doc. 031857-01 3/03 1-5

1.3.1 Safety Messages and Notes

Indicates an imminently hazardous situation which, if not avoided, will

Indicates a potentially hazardous situation which, if not avoided,

Indicates a potentially hazardous situation which, if not avoided, may

Indicates that the function or process of the instrument may be

Messages d'avertissement en franais

1-6 Doc. 031857-01 3/03

Bedeutet unmittelbare Gefahr. Miachtung kann zum Tod oder

Bedeutet eine mgliche Gefhrdung. Miachtung kann zum Tod oder

Bedeutet eine mgliche Gefhrdung. Miachtung kann zu kleineren

Informational messages also appear throughout this manual. These are

NOTE NOTES call attention to certain information. They alert

Doc. 031857-01 3/03 1-7

1.3.2 Safety Labels

Protective conductor terminal (earth ground)