Bergey's Manual of Systematic Bacteriology - Second Edition

DOI:10.
1007/bergeysoutline200405
TAXONOMIC OUTLINE OF THE PROKARYOTES

BERGEYS MANUAL OF SYSTEMATIC BACTERIOLOGY,
SECOND EDITION
Release 5.0 May 2004
George M. Garrity
Julia A. Bell
and Timothy G. Lilburn
George M. Garrity
Bergeys Manual Trust and Department of Microbiology and Molecu-
lar Genetics
Michigan State University
East Lansing, MI 488241101
Julia A. Bell
Food Safety and Toxicology Center
Michigan State University
East Lansing, MI 488241101
Timothy G. Lilburn
Bioinformatics Group
American Type Culture Collection
Manassas, VA 20110
2004 Bergeys Manual Trust
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believed to be true and accurate at the time of publication, neither th e
authors, the publisher, nor Bergeys Manual Trust can accept any le-
gal responsibility for any errors or omissions that may be made. The
publisher makes no warranty, express or implied, with respect to the
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This document was produced by the editorial of?ce of Bergeys Man-

ual Trust using Epic Document Architect and Epic Editor (Version 5.0,
ArborText, Ann Arbor, MI) and a prototype document ty pe de? nition
developed expressly for taxonomic hierarchies.
DOI 10.1007/bergeysoutline200405
Springer New York Berlin Heidelberg

Taxonomic Outline of the Prokaryotes Release 5.0
Bergeys Manual of Systematic Bacteriology, 2nd Edition
GEORGE M. GARRITY, JULIA A. BELL AND TIM OTHY G. LILBURN
Background The classi?cation presented below was ini- Technical notes Release 5.0 coincides with the publica-
tiated in the early 1990s in the editorial of?ce of Bergeys tion of Volume 2 of the second edition of the Systematics.
Manual Trust as a preliminary step in organizing the con- As stated earlier, we continue to search the taxonomic
tent of the second edition of Bergeys Manual of System- literature and the public databases for new, high quality
atic Bacteriology (the Systematics). The primary objec- 16S rDNA sequences (de?ned as >1400 nts, < 4% am-
tive was to devise a classi?cation that would re?ect the biguity, and fewer than 10 missing positions) and have
phylogeny of prokaryotes, as de?ned by 16S rDNA se- added these sequences to our phylogenetic models. In
quence analysis, while simultaneously placing all of the this release, we list 4540 unique sequences that are as-
validly named members of a given taxon into the clas- sociated with 4504 type strains and 894 synonyms. We
si?cation at a single point, based on the sequence of the have also added 197 new species/new combinations, 40
type strain, type species, or type genus. 1 new genera, 3 new families, 1 new order, and 1 new class
to our taxonomic model. New additions are summarized
Under ideal conditions, such a task would be relatively in Table 1.
straightforward. All species assigned to a genus would
be in agreement with the phylogenetic model and this The taxonomic model Within this classi? cation, we rec-
would be re?ected in the nomenclature. Furthermore, ognize two prokaryotic domains: the Archaea and Bacte-
each species would bear a single name that would re?ect ria. The domains are divided into phyla which are in turn
both its taxonomic and phylogenetic position. However, divided into classes, orders (except for the Cyanobacte-
we ? nd this not to be the case as there are a number of ex- ria for which we use the rank of subdivision), families,
isting genera (e.g., Clostridium, Aquaspirillum) that are and genera. In the Actinobacteria, subclasses and sub-
paraphyletic based on the 16S rDNA model. It is our orders are recognized, and suborders occur within the
view that such instances indicate a need for taxonomic Myxococcales. The rank of kingdom is not used to avoid
revision. In addition, prior taxonomic revisions have led possible con? icts with the Botanical Code, where some
to numerous instances in which the same species may overlap exists. Readers are advised that the Code of
bear more than one validly published name, indicating Prokaryotic Nomenclature does not cover taxa above the
differences in taxonomic opinion. To ensure complete- Class, even though the domain and phylum names ap-
ness, we have opted to include the majority of these syn- pearing in the Outline and in the Manual have appeared
onyms within the Outline. in Validation List 85. As of May 2004, 6661 validly
named prokaryotic species appeared either in the Ap-
Placement of species within the Outline is dictated by proved List of Bacterial Names (Skerman et al., 1980), in
the genus name rather than the position within any given original papers published in the International Journal of
phylogenetic model. We believe that periodic publica- Systematic Bacteriology or the International Journal of
tion of updated versions of this Outline will provide the Systematic and Evolutionary Microbiology, or in Valida-
community with an indication of the progress that has tion Lists 196. 2 In this version of the Outline, we extend
been made in resolving such problems, as well as point- our list of synonyms to 1226 by including forthcoming
ing out any remaining or new discrepancies that have oc- assertions of synonymy that will appear in Volume 2 of
curred between revisions. Therefore, any reference to the Systematics. Readers should be aware that, in some
the outline should include the release number, the publi- cases, we have opted to exclude some names that have
cation date, and the digital object identi? er (the DOI) of not found widespread usage, even though those names
the release being referenced. are validly published.
1
A more d etaile d discussion of the h istorical aspe cts of this effort a re pres ente d in th e ?rst re lea se of t he O ut line a nd b y Ga rrity and Holt in
Volume 1 o f t he Systema tics.
2
Lists 1 -7 1 were pub lishe d in t he I nternat ion al Jo urnal of Sy st emat ic B act eriology a nd lis ts 72 -8 2 in t he I nternat ion al Jo urnal of Sy st emat ic
an d E volu tion ary Microb iology, 27 (197 7) 30 6; 29 (197 9) 79 , 4 36; 30 (19 80) 6 01, 67 6; 31 (1981 ) 21 5, 382; 3 2 (1 982) 266, 3 84; 33 (198 3)
43 8, 672 , 896 ; 34 (198 4) 9 1, 27 0, 355 , 503 ; 35 (198 5) 223, 3 75, 5 35; 36 (1 986) 35 4, 489 , 573; 37 (198 7) 1 79; 3 8 (1988 ) 13 6, 22 0, 328 , 449 ;
39 (1 989) 93, 205, 3 71, 4 95; 4 0 (1 990 ) 10 5, 21 2, 320 , 470 ; 41 (199 1) 178, 331, 4 56, 5 80; 4 2 (1 992) 19 1, 32 7, 511, 65 6; 43 (19 93) 188 , 398 ,
62 4, 864; 44 (19 94) 1 82, 370 , 5 95, 852 ; 45 (1 995) 197, 41 8, 619, 87 9; 46 (1996 ) 362 , 6 25, 836 , 1189 ; 47 (1 997) 242, 60 1, 915, 1 274; 48
(199 8) 327, 6 27, 6 31, 10 83; 4 9 (1999 ) 1 , 341, 935, 1 325; 50 (200 0) 3, 423 , 949 , 1415 , 169 9, 195 3; 51 (2 001) 1, 2 63, 7 93, 12 29, 1 619, 1 945 ;
52 (2 002) 3 , 29 3, 685, 107 5, 1 437, 191 5; 53 (20 03) 1 , 37 3, 6 27, 935, 122 1, 1701 ;54:(2004 ) 3, 307.
2004 Bergeys Manual Trust

All rights reserved.
1
Taxonomic Outline of the Procaryotes
Adoption of a hierarchical classi?cation presents several gle type of data that will soon be available for all validly
dif? culties that must also be recognized. By de? nition, named species. Given the rapid advancements in se-
each species must be a member of successively higher quencing technology, we expect that sequences of other
ranks (six of which are recognized for the majority of genes will follow in the near future and help in resolving
taxa in the second edition of the Systematics). Yet there is the placement of problem taxa.
considerable reluctance among many contemporary sys-
tematic procaryotic biologists to place new species and Interpretation of the taxonomic outline At present, the
genera into higher taxa, especially at the intermediate two procaryotic domains have been subdivided into 26
levels (family, order, and class) because of uncertainty of phyla 3, two of which occur within the Archaea. The re-
phylogenetic models. In compiling and maintaining the maining 24 phyla are ascribed to the Bacteria. The fact
outline we have often had to deal with instances where that the Archaea and deeply branching Bacteria are pre-
new species were variously assigned to a class or do- sented ? rst is based largely on the early versions of the
main without being ascribed membership in any of the RDP tree. Since the branching order of species within
intervening taxa. This may be attributed to a lack of genera is frequently ambiguous and the data set is known
clear rules for delineating higher taxa. It may also re?ect to be incomplete, the use of phylogenetic trees as a guide
the inherent limitations of the 16S rRNA gene for de?n- for ordering taxa, both in the outline and the Systematics
ing a higher taxonomic structure, especially when con- Manual proved to be untenable. Thus, we have adopted a
temporary phylogenetic techniques, which rely on tree more workable and all-inclusive strategy. The type taxon
graphs as the principal interpretive device, are used to always appears ? rst. Within lower taxa, members of the
analyze small and inherently biased data sets. We have rank will usually appear in alphabetical order. The hi-
also observed a general lack of consistency in de? ning erarchical numbering scheme used in the outline is arbi-
the boundaries of genera based on 16S rDNA sequence trary, especially at the lower levels. It is also subject to
analysis. This is particularly problematic in bushy areas change as new taxa are described and existing taxa re-
of the ARB and RDP trees where uncertainty of branch- classi?ed. Therefore, we advise against using the num-
ing order is high and clear demarcation of taxonomic bering scheme as an organizational or mnemonic device.
groups is impossible in the absence of other supporting
data. Decoding the entries Within this document, as well as
within the Systematics, we follow the American style
In dealing with such problems, we have ? lled in the for rendering Latinized names. Regardless of rank, all
missing taxa to complete the hierarchy. Names of names appear in italics. The superscript AL indicates
higher taxa are based largely on priority, except in that the name was included on the Approved Lists of
instances where such a strategy might lead to unnec- Bacterial Names published in 1980. The superscript VP
essary confusion (e.g., Helicobacteraceae rather than indicates that the name was validly published in the In-
Wolinellaceae). Considerable effort has been spent in ternational Journal of Systematic Bacteriology (now the
con?rming the placement of genera within higher taxa. International Journal of Systematic and Evolutionary
Each of these higher taxa has also been scrutinized for Microbiology) or appeared on one of the validation lists
phylogenetic coherence so as to avoid paraphyletic or published in that journal. Names appearing in quotes
polyphyletic groupings wherever possible. However, have no standing in nomenclature, although they may
since 16S rDNA sequences are not yet available for have been effectively published elsewhere. Names fol-
all validly named species, some such instances will re- lowed with superscripted NP are indicative of proposals
main for the foreseeable future. We have annotated the for new taxa that will appear in the forthcoming second
species level outline in many areas to provide users some volume of the Systematics.
insight into our rationale for placements that might be
deemed controversial or to alert the reader to problems In the case of species names, each is followed with the
concerning the validity or legitimacy of names. Readers authority for the name and year of the original descrip-
are invited to pass along any comments or observations tion, in abbreviated form. The type strain (species), type
along with supporting data regarding other potential species (genus), type genus (family and order), and type
misplacements or errors. order (class and above) are indicated by an uppercase T,
enclosed in parentheses and in superscript. New taxa (re-
Despite some limitations, it is our view that the use of the cently added) are highlighted in red type and those which
well established phylogeny based on the 16S rRNA gene have been relocated within the outline as a result of com-
provides a marked improvement over the earlier arti? cial ments from experts appear in magenta. Readers should
classi? cations of prokaryotes. The technique (16S rDNA understand that the taxa are not, in reality moved, but are
sequencing) is universally applicable and provides a sin- the subject of alternative taxonomic views.
3
It is likely tha t th is n umb er un derst ates t he tru e numb er o f ph ylum leve l lineag es within t he Bac teria. Hugen holtz rec ogniz es at le as t fo ur
oth er p hyla within t he Firmicu tes.
2
In the unabridged version of the outline that includes Citation Garrity, G.M., J.A. Bell and T.G. Lilburn.
species names and associated information, proposals for (2004) Taxonomic Outline of the Prokaryotes. Bergeys
new combinations typically result in multiple changes Manual of Systematic Bacteriology, Second Edition.,
within the taxonomy. The new name is followed by the Release 5.0., Springer-Verlag, New York. pages. DOI:
basonym, which is identi?ed by the symbol <- preced- 10.1007/bergeysoutline200405
ing the old name. Basonyms are also homotypic syn-
onyms (formerly referred to as objective synonyms) by Acknowledgments We also would like to acknowledge
default. To minimize redundancy, we will not identify Drs. Wolfgang Ludwig and Karl-Heinz Schleifer (Tech-
them as such. The old name is also retained within the nical University of Munich), Sean Turner (NCBI), Philip
outline, in the original location. However, older names Hugenholtz (UC. Berkeley), and James Cole and Qiong
are preceded by a dagger symbol () and should be con- Wang (RDP/Center for Microbial Ecology, Michigan
sidered deprecated under most circumstances. Follow- State) for their numerous and helpful discussions on
ing the old name and information about the taxonomic resolving discrepancies between the Bergeys Outline
authority the new name appears in green type preceded and the phylogenetic reference trees and uncovering
by an arrow (->). In instances of synonymy, the syn- annotation errors; Drs. Jean Euzby (cole Nationale
onyms (either homotypic or heterotypic) are identi? ed as Vtrinaire de Toulouse), Brian Tindall (Deutsche
such and preceded by an equals sign (=). Synonyms are Sammlung von Mikroorganismen und Zellkulturen,
further categorized as either senior or junior, indicating GmbH) and Aharon Oren for numerous helpful and
priority. More detailed information regarding the topics spirited comments on nomenclature and editorial re-
of synonymy and priority are available in the Interna- marks. We would also like to extend our thanks to Drs.
tional Code of Nomenclature of Bacteria (1990 Revision) David Boone, Paul De Vos, Michael Goodfellow, Noel
4
and in Minutes of the Judicial Commission on Prokary- Kreig, Fred Rainey, Erko Stackebrandt, James Staley,
otic Nomenclature published in the International Jour- Joseph Tully, and William Whitman for their helpful
nal of Systematic and Evolutionary Microbiology. discussions and constructive comments.
Immediately following the nomenclature section of each This document was developed and is maintained as an
entry follows key information regarding the type strain, XML instance of a custom document type de?nition for
including the original strain designation, when reported, taxonomic hierarchies using Epic Architect and Epic
and all known deposits in major culture collections 5 . Editor, Version 5.0, (ArborText, Ann Arbor, MI). The
Each such deposit is set off by a small vertical bar ( DTD was authored by George M. Garrity (Michigan
| ). If one or more high quality 16S rDNA sequences State University, East Lansing, MI) and Catherine Lyons
have been reported for that strain, information regarding (Explicatrix llc, Sterling, NJ) and is interoperable with
those sequences will follow. The ?rst value will be the the Bergeys Manual DTD. This research was supported
GenBank, EMBL or DDBJ accession number(s). This in part by the Biological and Environmental Research
will be followed by the RDP short identi? er, which is Program (BER), U.S. Department of Energy, Grant No.
typically an alphanumeric abbreviation derived from the DE-FG02-02ER63315.
species name. Each such triplet is set off from others by
the small vertical bar (|).
4
Lap age et al., (1992 ) AS M Press, Washin gton , D C.
5
W it h t his re lea se of th e O ut line, we ha ve impleme nted a chang e in the p re ?x o f t he forme r Ins titute of Ferme ntation, O s aka c ulture co llec tion
(IFO ) t o the new desig nation a s the NI TE (Nationa l In stitut e of Tec hn olo gy and Ev alu ation) B iologica l R eso urce Cente r (N BRC).
3
Ran k Taxon Phylum Class
Class Anaerolineae Chloro?exi
Ord er Anaerolinaeles Chloro?exi Anaerolineae
Family Anaerolinaeceea Chloro?exi Anaerolineae
Hydrogenimonaceae Proteobacteria Epsilonproteobacteria
Thermodesulfobiaceae Firmicutes Clostridia
Gen us Aeriscardovia Actinobacteria Actinobacteria
Aestuariibacter Proteobacteria Gamm aproteobacteria
Alistipes Bacteroidetes Bacteroidetes
Anaerolinea Chloro?exi Anaerolineae
Anaerotruncus Firmicutes Clostridia
Aquicella Proteobacteria Gamm aproteobacteria
Arsenicicoccus Actinobacteria Actinobacteria
Balnearium Aqui?cae Aqui?cae
Belliella Bacteroidetes Sphingobacteria
Bryantella Firmicutes Clostridia
Caldanaerobacter Firmicutes Clostridia
Caldilinea Chloro?exi Anaerolineae
Caldithrix D eferribacteres Deferribacteres
Desulfatibacillum Proteobacteria Deltaproteobacteria
Fulvimarina Proteobacteria Alphaproteobacteria
Gillisia Bacteroidetes Flavobacteria
Hespellia Firmicutes Clostridia
Hongiella Bacteroidetes Sphingobacteria
Hydrogenimonas Proteobacteria Epsilonproteobacteria
Hylemonella Proteobacteria Betaproteobacteria
Kerstersia Proteobacteria Betaproteobacteria
Mesonia Bacteroidetes Flavobacteria
Methanomethylovorans Euryarchaeota Methanomicrobia
Nitratireductor Proteobacteria Alphaproteobacteria
Oceanicaulis Proteobacteria Alphaproteobacteria
Oceanisphaera Proteobacteria Gamm aproteobacteria
Ottowia Proteobacteria Betaproteobacteria
Parasporobacterium Firmicutes Clostridia
Phytoplasma Firmicutes Mollicutes
Propionicimonas Actinobacteria Actinobacteria
Rhabdochlamydia Chlamydiae Chlam ydiae
Salinibacterium Actinobacteria Actinobacteria
4
Silicibacter Proteobacteria Alphaproteobacteria
Soehngenia Firmicutes Clostridia
Sulfurimonas Proteobacteria Epsilonproteobacteria
Thalassolituus Proteobacteria Gamm aproteobacteria
Thermodesulfatator Therm odesulfobacteria Thermodesulfobacteria
Thermodesulfobium Firmicutes Clostridia
Wautersia Proteobacteria Betaproteobacteria
Xylanibacterium Actinobacteria Actinobacteria
Yania Actinobacteria Actinobacteria
Species Achromobacter denitri?cans Proteobacteria Betaproteobacteria
Achromobacter insolitus Proteobacteria Betaproteobacteria
Achromobacter spanius Proteobacteria Betaproteobacteria
Actinom adura mexicana Actinobacteria Actinobacteria
Actinom adura meyerii Actinobacteria Actinobacteria
Actinom yces hongkongensis Actinobacteria Actinobacteria
Aeriscardovia aeriphila Actinobacteria Actinobacteria
Aeromicrobium marinum Actinobacteria Actinobacteria
Aeromonas simiae Proteobacteria Gamm aproteobacteria
Aeropyrum camini Crenarchaeota Thermoprotei
Aestuariibacter halophilus Proteobacteria Gamm aproteobacteria
Aestuariibacter salexigens Proteobacteria Gamm aproteobacteria
Agreia pratensis Actinobacteria Actinobacteria
Alistipes ?negoldii Bacteroidetes Bacteroidetes
Alistipes putredinis Bacteroidetes Bacteroidetes
Amycolatopsis decaplanina Actinobacteria Actinobacteria
Amycolatopsis lurida Actinobacteria Actinobacteria
Amycolatopsis palatopharyngis Actinobacteria Actinobacteria
Anaerolinea thermophila Chloro?exi Anaerolineae
Anaerotruncus colihominis Firmicutes Clostridia
Ancylobacter rudongensis Proteobacteria Alphaproteobacteria
Aneurinibacillus danicus Firmicutes Bacilli
Aquicella lusitana Proteobacteria Gamm aproteobacteria
Aquicella siphonis Proteobacteria Gamm aproteobacteria
Arsenicicoccus bolidensis Actinobacteria Actinobacteria
Arthrobacter gandavensis Actinobacteria Actinobacteria
Asaia krungthepensis Proteobacteria Alphaproteobacteria
Bacillus aeolius Firmicutes Bacilli
5
Bacillus bataviensis Firmicutes Bacilli
Bacillus drentensis Firmicutes Bacilli
Bacillus galactosidilyticus Firmicutes Bacilli
Bacillus novalis Firmicutes Bacilli
Bacillus odysseyi Firmicutes Bacilli
Bacillus shackletonii Firmicutes Bacilli
Bacillus soli Firmicutes Bacilli
Bacillus vireti Firmicutes Bacilli
Balnearium lithotrophicum Aqui?cae Aqui?cae
Bartonella chomelii Proteobacteria Alphaproteobacteria
Belliella baltica Bacteroidetes Sphingobacteria
Bi?dobacterium psychraerophilum Actinobacteria Actinobacteria
Brachybacterium muris Actinobacteria Actinobacteria
Brevibacillus limnophilus Firmicutes Bacilli
Bryantella form atexigens Firmicutes Clostridia
Caldilinea aerophila Chloro?exi Anaerolineae
Caldithrix abyssi D eferribacteres Deferribacteres
Caminibacter profundus Proteobacteria Epsilonproteobacteria
Cellulomonas xylanilytica Actinobacteria Actinobacteria
Cellulophaga paci?ca Bacteroidetes Flavobacteria
Chryseobacterium miricola Bacteroidetes Flavobacteria
Corynebacterium nigricans Actinobacteria Actinobacteria
Corynebacterium suicordis Actinobacteria Actinobacteria
Deinococcus indicus D einococcus-Therm us Deinococci
Desulfatibacillum aliphaticivorans Proteobacteria Deltaproteobacteria
Desulfofaba fastidiosa Proteobacteria Deltaproteobacteria
Desulfofaba hansenii Proteobacteria Deltaproteobacteria
Dialister invisus Firmicutes Clostridia
Ensifer arboris Proteobacteria Alphaproteobacteria
Ensifer fredii Proteobacteria Alphaproteobacteria
Ensifer kostiensis Proteobacteria Alphaproteobacteria
Ensifer kummerowiae Proteobacteria Alphaproteobacteria
Ensifer medicae Proteobacteria Alphaproteobacteria
Ensifer meliloti Proteobacteria Alphaproteobacteria
Ensifer saheli Proteobacteria Alphaproteobacteria
Ensifer terangae Proteobacteria Alphaproteobacteria
Ensifer xinjiangensis Proteobacteria Alphaproteobacteria
6
Erysipelothrix inopinata Firmicutes Mollicutes
Flavobacterium degerlachei Bacteroidetes Flavobacteria
Flavobacterium frigoris Bacteroidetes Flavobacteria
Flavobacterium micromati Bacteroidetes Flavobacteria
Fulvimarina pelagi Proteobacteria Alphaproteobacteria
Gillisia limnaea Bacteroidetes Flavobacteria
Haloferax lucentense Euryarchaeota Halobacteria
Halomonas axialensis Proteobacteria Gamm aproteobacteria
Halomonas hydrothermalis Proteobacteria Gamm aproteobacteria
Halomonas neptunia Proteobacteria Gamm aproteobacteria
Halomonas sul?daeris Proteobacteria Gamm aproteobacteria
Halorubrum terrestre Euryarchaeota Halobacteria
Herbaspirillum lusitanum Proteobacteria Betaproteobacteria
Hespellia porcina Firmicutes Clostridia
Hespellia stercorisuis Firmicutes Clostridia
Hongiella halophila Bacteroidetes Sphingobacteria
Hongiella mannitolivorans Bacteroidetes Sphingobacteria
Hongiella ornithinivorans Bacteroidetes Sphingobacteria
Hydrogenimonas therm ophila Proteobacteria Epsilonproteobacteria
Hylemonella gracilis Proteobacteria Betaproteobacteria
Idiomarina loihiensis Proteobacteria Gamm aproteobacteria
Kerstersia gyiorum Proteobacteria Betaproteobacteria
Kitasatospora kifunensis Actinobacteria Actinobacteria
Kitasatospora putterlickiae Actinobacteria Actinobacteria
Lactobacillus kitasatonis Firmicutes Bacilli
Lactobacillus paracollinoides Firmicutes Bacilli
Leptotrichia goodfellowii Fusobacteria Fusobacteria
Leptotrichia hofstadii Fusobacteria Fusobacteria
Leptotrichia shahii Fusobacteria Fusobacteria
Leptotrichia wadei Fusobacteria Fusobacteria
Luteococcus sanguinis Actinobacteria Actinobacteria
Marinobacter excellens Proteobacteria Gamm aproteobacteria
Marinobacter lutaoensis Proteobacteria Gamm aproteobacteria
Marinospirillum insulare Proteobacteria Gamm aproteobacteria
Mesonia algae Bacteroidetes Flavobacteria
Methanocalculus chunghsingensis Euryarchaeota Methanomicrobia
Methanocaldococcus indicus Euryarchaeota Methanococci
7
Methanoculleus submarinus Euryarchaeota Methanomicrobia
Methanogenium m arinum Euryarchaeota Methanomicrobia
Methanomethylovorans hollandica Euryarchaeota Methanomicrobia
Methylocella tundrae Proteobacteria Alphaproteobacteria
Microbacterium ulmi Actinobacteria Actinobacteria
Microtetraspora m alaysiensis Actinobacteria Actinobacteria
Mycobacterium caprae Actinobacteria Actinobacteria
Mycobacterium monte?orense Actinobacteria Actinobacteria
Mycoplasma ovis Firmicutes Mollicutes
Nitratireductor aquibiodomus Proteobacteria Alphaproteobacteria
Nocardia asiatica Actinobacteria Actinobacteria
Nocardia inohanensis Actinobacteria Actinobacteria
Nocardia neocaledoniensis Actinobacteria Actinobacteria
Nocardia niigatensis Actinobacteria Actinobacteria
Nocardia tenerifensis Actinobacteria Actinobacteria
Nocardia yam anashiensis Actinobacteria Actinobacteria
Nocardioides aquiterrae Actinobacteria Actinobacteria
Nocardiopsis aegyptia Actinobacteria Actinobacteria
Nocardiopsis alkaliphila Actinobacteria Actinobacteria
Oceanicaulis alexandrii Proteobacteria Alphaproteobacteria
Oceanisphaera litoralis Proteobacteria Gamm aproteobacteria
Ottowia thiooxydans Proteobacteria Betaproteobacteria
Paenibacillus favisporus Firmicutes Bacilli
Parasporobacterium paucivorans Firmicutes Clostridia
Petrotoga mexicana Therm otogae Thermotogae
Phytoplasma ulmi Firmicutes Mollicutes
Planococcus maitriensis Firmicutes Bacilli
Planococcus maritimus Firmicutes Bacilli
Planococcus ri?etoensis Firmicutes Bacilli
Polaromonas naphthalenivorans Proteobacteria Betaproteobacteria
Promicromonospora pachnodae Actinobacteria Actinobacteria
Propionicimonas paludicola Actinobacteria Actinobacteria
Pseudomonas rhizosphaerae Proteobacteria Gamm aproteobacteria
Pseudonocardia chloroethenivorans Actinobacteria Actinobacteria
Psychrobacter okhotskensi Proteobacteria Gamm aproteobacteria
Ralstonia syzygii Proteobacteria Betaproteobacteria
Rhabdochlamydia porcellionis Chlamydiae Chlam ydiae
8
Rheinheimera paci?ca Proteobacteria Gamm aproteobacteria
Rhizobium larrymoorei Proteobacteria Alphaproteobacteria
Rhodococcus gordoniae Actinobacteria Actinobacteria
Roseom onas gilardii gilardii Proteobacteria Alphaproteobacteria
Roseom onas gilardii rosea Proteobacteria Alphaproteobacteria
Roseom onas mucosa Proteobacteria Alphaproteobacteria
Roseospira marina Proteobacteria Alphaproteobacteria
Roseospira navarrensis Proteobacteria Alphaproteobacteria
Salinibacterium am urskyense Actinobacteria Actinobacteria
Shewanella gaetbuli Proteobacteria Gamm aproteobacteria
Silicibacter lacuscaerulensis Proteobacteria Alphaproteobacteria
Silicibacter pomeroyi Proteobacteria Alphaproteobacteria
Soehngenia saccharolytica Firmicutes Clostridia
Sphingobium am iense Proteobacteria Alphaproteobacteria
Staphylococcus nepalensis Firmicutes Bacilli
Streptococcus minor Firmicutes Bacilli
Streptomyces luridiscabiei Actinobacteria Actinobacteria
Streptomyces niveiciscabiei Actinobacteria Actinobacteria
Streptomyces puniciscabiei Actinobacteria Actinobacteria
Streptomyces scabrisporus Actinobacteria Actinobacteria
Streptomyces yeochonensis Actinobacteria Actinobacteria
Sul?tobacter delicatus Proteobacteria Alphaproteobacteria
Sul?tobacter dubius Proteobacteria Alphaproteobacteria
Sulfurihydrogenibium azorense Aqui?cae Aqui?cae
Sulfurimonas autotrophica Proteobacteria Epsilonproteobacteria
Tenacibaculum skagerrakense Bacteroidetes Flavobacteria
Tepidibacter formicigenes Firmicutes Clostridia
Tepidimonas aquatica Proteobacteria Betaproteobacteria
Thalassolituus oleivorans Proteobacteria Gamm aproteobacteria
Thalassomonas ganghwensis Proteobacteria Gamm aproteobacteria
Thermodesulfatator indicus Therm odesulfobacteria Thermodesulfobacteria
Thermodesulfobium narugense Firmicutes Clostridia
Thermomonas brevis Proteobacteria Gamm aproteobacteria
Thermomonas fusca Proteobacteria Gamm aproteobacteria
Thermovibrio ammoni?cans Aqui?cae Aqui?cae
Thialkalivibrio nitratireducens Proteobacteria Gamm aproteobacteria
Tindallia californiensis Firmicutes Clostridia
9
Tsukamurella spumae Actinobacteria Actinobacteria
Vibrio hispanicus Proteobacteria Gamm aproteobacteria
Vibrio superstes Proteobacteria Gamm aproteobacteria
Vibrio tasm aniensis Proteobacteria Gamm aproteobacteria
Wautersia basilensis Proteobacteria Betaproteobacteria
Wautersia campinensis Proteobacteria Betaproteobacteria
Wautersia eutropha Proteobacteria Betaproteobacteria
Wautersia gilardii Proteobacteria Betaproteobacteria
Wautersia metallidurans Proteobacteria Betaproteobacteria
Wautersia oxalatica Proteobacteria Betaproteobacteria
Wautersia paucula Proteobacteria Betaproteobacteria
Wautersia respiraculi Proteobacteria Betaproteobacteria
Wautersia taiwanensis Proteobacteria Betaproteobacteria
Williamsia m aris Actinobacteria Actinobacteria
Xylanibacterium ulmi Actinobacteria Actinobacteria
Yania halotolerans Actinobacteria Actinobacteria
Subspecies Caldanaerobacter subterraneus paci?cus Firmicutes Clostridia
Caldanaerobacter subterraneus subterraneus Firmicutes Clostridia
Caldanaerobacter subterraneus tengcongensis Firmicutes Clostridia
Caldanaerobacter subterraneus yonseiensis Firmicutes Clostridia
Lactobacillus ke?ranofaciens ke?ranofaciens Firmicutes Bacilli
Lactobacillus ke?ranofaciens ke?rgranum Firmicutes Bacilli
10
Domain Archaea VP
Phylum AI. Crenarchaeota VP 6
Class I. Thermoprotei VP
Order I. Thermoproteales VP (T)
Family I. Thermoproteaceae VP
Genus I. Thermoproteus VP (T)
Thermoproteus tenax VP (T) Zillig and Stetter 1982 DSM 2078
Thermoproteus neutrophilus VP Zillig 1989 DSM 2338 | JCM 9278, AB009618,
Thp.neutro
Thermoproteus uzoniensis VP Bonch-Osmolovskaya et al. 2001 7 Z-605 | DSM 5263
Genus II. Caldivirga VP
Caldivirga maquilingensis VP (T) Itoh et al. 1999 IC-167, AB013926 | JCM 10307 | MCC-
UPLB 1200 | ANMR 0178
Genus III. Pyrobaculum VP
Pyrobaculum islandicum VP (T) Huber et al. 1988 GEO3, L07511, Pyb.island | DSM
4184
Pyrobaculum aerophilum VP Vlkl et al. 1996 IM2, L07510, Pyb.aeroph | DSM 7523
Pyrobaculum arsenaticum VP Huber et al. 2001 PZ6, AJ277124 | 700994 | ATCC 700994
| DSM 13514
Pyrobaculum organotrophum VP Huber et al. 1988 H10 | DSM 4185 | JCM 9190,
AB063647
Pyrobaculum oguniense VP Sako et al. 2001 TE7, AB029339 | DSM 13380 | JCM 10595
Genus IV. Thermocladium VP
Thermocladium modestius VP (T) Itoh et al. 1998 IC-125, AB005296, Tcl.modest | JCM
10088
Genus V. Vulcanisaeta VP
Vulcanisaeta souniana VP (T) Itoh et al. 2002 IC-059 | JCM 11219 | DSM 14430,
AB063645
Vulcanisaeta distributa VP Itoh et al. 2002 IC-017, AB063630 | JCM 11212 | DSM 14429
Family II. Thermo?laceae VP
Genus I. Thermo?lum VP (T)
Thermo?lum pendens VP (T) Zillig and Gierl 1983 Hvv3, X14835, Tmf.penden | DSM
2475, X14835, Tmf.penden
Order II. "Caldisphaerales"
Family I. "Caldisphaeraceae"
Genus I. Caldisphaera VP (T)
Caldisphaera lagunensis VP (T) Itoh et al. 2003 IC-154, AB087499 | ANMR 0165 | JCM
11604 | MCC-UPLB 1331
Order III. Desulfurococcales VP
Family I. Desulfurococcaceae VP
Genus I. Desulfurococcus VP (T)
Desulfurococcus mucosus VP (T) Zillig and Stetter 1983 DSM 2162
Desulfurococcus amylolyticus VP Bonch-Osmolovskaya et al. 2001 Z533, AF250331
| DSM 3822 | JCM 9188
Desulfurococcus mobilis VP Zillig and Stetter 1983 DSM 2161

Genus II. Acidilobus VP 8
Acidilobus aceticus VP (T) Prokofeva et al. 2000 1904 | DSM 11585, AF191225
Genus III. Aeropyrum VP
Aeropyrum pernix VP (T) Sako et al. 1996 K1, AB008745, Ap.pernix2 | K1, D83259,
Ap.pernix1 | DSM 11879 | JCM 9820
6
Bo th the ARB a nd RDP trees p ro vide su pport for t he gene ra l tax onom ic s truc ture propos ed fo r the Crena rc hae ota. Lud wig in dic ate s tha t
S ulfo lob ale s and Desulfu ro co ccales are sister g ro ups bu t s tates th at th e The rm oprote ale s m ay not be mono phy le tic .
7
Not e that a subculture of th e typ e st ra in is on ly d eposited in one pu blic c olle ction or ma y oth erwis e be in violation of Rules 27(3) and /or
30 (3 a-b,4) a s eme nded by th e Jud icial Co mmission in 199 9 (IJ SE M 50: 223 922 44).
8
Prokofeva et al. sug gest tha t Acid ilobus represents a sepa ra te line age within the Crenarc haeo ta. Th is has not y et b een c on ?rme d in eith er
the A RB o r RDP trees.
11
Aeropyrum camini VP Nakagawa et al. 2004 SY1, AB109559 | ATCC BAA-758 | JCM
12091
Genus IV. Ignicoccus VP
Ignicoccus islandicus VP (T) Huber et al. 2000 Kol8, X99562 | ATCC 700957 | DSM
13165
Ignicoccus paci?cus VP Huber and Stetter 2000 LPC33, AJ271794 | ATCC 700958 | DSM
13166
Genus V. Staphylothermus VP
Staphylothermus marinus VP (T) Stetter and Fiala 1986 F1, X99560, Sth.marinu | ATCC
49053 | DSM 3639, X99560, Sth.marinu
Staphylothermus hellenicus VP Arab et al. 2000 P8, AJ012645 | DSM 12710 | JCM 10830
Genus VI. Stetteria VP
Stetteria hydrogenophila VP (T) Jochimsen et al. 1998 4ABC, Y07784, Str.hygen2 |
4ABC, Y07963, Str.hygeno | DSM 11227
Genus VII. Sulfophobococcus VP
Sulfophobococcus zilligii VP (T) Hensel et al. 1997 K1, X98064, Slp.zillig | DSM 11193
| JCM 10309
Genus VIII. Thermodiscus VP

Thermodiscus maritimus NP (T) Stetter 2001 S2, X99554
Genus IX. Thermosphaera VP
Thermosphaera aggregans VP (T) Huber et al. 1998 M11TL, X99556, Thm.aggreg | DSM
11486
Family II. Pyrodictiaceae VP
Genus I. Pyrodictium VP (T)
Pyrodictium occultum VP (T) Stetter et al. 1984 PL-19, M21087, Pyr.occult | DSM 2709
Pyrodictium abyssi VP Pley et al. 1991 AV2 | DSM 6158, X99559, Pyr.abyssi
Pyrodictium brockii VP Stetter et al. 1984 S 1 | DSM 2708
Genus II. Hyperthermus VP
Hyperthermus butylicus VP (T) Zillig et al. 1991 DSM 5456, X99553, Hth.butyli
Genus III. Pyrolobus VP
Pyrolobus fumarii VP (T) Blchl et al. 1999 1A, X99555, Pyl.fumari | DSM 11204
Order IV. Sulfolobales VP
Family I. Sulfolobaceae VP
Genus I. Sulfolobus AL (T)
Sulfolobus acidocaldarius AL (T) Brock et al. 1972 ATCC 33909, D14876, Sul.acalda |
DSM 639, D14053, Sul.acald4 | DSM 639, U32320, Sul.acald5 | NCIB 11770
Sulfolobus brierleyi AL Zillig et al. 1980 -> Acidianus brierleyi DSM 1651, X90477,
Adi.brier3 | NBRC 15269
Sulfolobus hakonensis VP Takayanagi et al. 1996 HO1-1 | ATCC 51241 | DSM 7519,
D86414 | IAM 14250 | JCM 8857
Sulfolobus metallicus VP Huber and Stetter 1992 Kra 23 | DSM 6482, D85519,
Sul.metal2 | DSM 6482, X90479, Sul.metall
Sulfolobus shibatae VP Grogan et al. 1991 B12 | DSM 5389 | DSM 5389, M32504,
Sul.shibat
Sulfolobus solfataricus AL Zillig et al. 1980 ATCC 35091 | DSM 1616, D26490,
Sul.solfa4 | DSM 1616, X90478, Sul.solfa6
Sulfolobus tokodaii VP Suzuki et al. 2002 9 7, AB022438 | JCM 10545
Sulfolobus yangmingensis VP Jan et al. 1999 YM1, AB010957
Genus II. Acidianus VP
Acidianus infernus VP (T) Segerer et al. 1986 So4a | DSM 3191, D38773, Adi.infern |
DSM 3191, D85505, Adi.infer3 | DSM 3191, X89852, Adi.infer2
9
Not e that a subculture of th e typ e st ra in is on ly d eposited in one pu blic c olle ction or ma y oth erwis e be in violation of Rules 27(3) and /or
12
Acidianus ambivalens VP (Zillig and Bck 1987) Fuchs et al. 1996 <- Desulfurolobus
ambivalens (basonym) Lei 10 | DSM 3772, D85506, Adi.ambivl | DSM 3772,
D85506, Adi.ambiv3 | DSM 3772, X90484, Adi.ambiv2
Acidianus brierleyi VP (Zillig et al. 1980) Segerer et al. 1986 <- Sulfolobus brierleyi
(basonym) DSM 1651, D26489, Adi.brier2 | DSM 1651, X90477, Adi.brier3
Genus III. Metallosphaera VP
Metallosphaera sedula VP (T) Huber et al. 1989 TH2 | DSM 5348, D26491, Mts.sedula |
DSM 5348, X90481, Mts.sedul3
Metallosphaera prunae VP Fuchs et al. 1996 Ron 12/II, X90482, Mts.prunae | DSM
10039, X90482, Mts.prunae
Genus IV. Stygiolobus VP
Stygiolobus azoricus VP (T) Segerer et al. 1991 FC6 | DSM 6296, D85520, Sl.azoric2 |
DSM 6296, X90480, Sl.azoricu
Genus V. Sulfurisphaera VP
Sulfurisphaera ohwakuensis VP (T) Kurosawa et al. 1998 TA-1, D85507, Sfr.ohwaku |
DSM 12421 | NBRC 15161, D85507, Sfr.ohwaku
Genus VI. Sulfurococcus VP
Sulfurococcus mirabilis VP (T) Golovacheva et al. 1995 INMI AT-59
Sulfurococcus yellowstonensis VP Karavaiko et al. 1995 Str6kar
Phylum AII. Euryarchaeota VP 10
Class I. Methanobacteria VP
Order I. Methanobacteriales VP (T)
Family I. Methanobacteriaceae AL
Genus I. Methanobacterium AL (T)
Methanobacterium formicicum AL (T) Schnellen 1947 MF | ATCC 33274 | DSM 1535,
AF169245 | OCM 55
Methanobacterium alcaliphilum VP Worakit et al. 1986 WeN4 | DSM 3387 | OCM 11
Methanobacterium arbophilicum AL Zeikus and Henning 1975 -> Methanobrevibacter
arboriphilicus DH1, AY196665 | ATCC 33747 | DSM 1125
Methanobacterium bryantii VP Balch and Wolfe 1981 M.o.H. | ATCC 33272 | DSM 863,
M59124, Mb.bryanti
Methanobacterium congolense VP Cuzin et al. 2001 C, AF233586 | DSM 7095 | OCM
779
Methanobacterium de?uvii VP Kotelnikova et al. 1994 -> Methanothermobacter de-
?uvii ADZ, X99046, Mbt.d?uvi | DSM 7466, X99046, Mbt.d? uvi | VKM B-1962,
X99046, Mbt.d? uvi 11
Methanobacterium espanolae VP Patel et al. 1990 GP9, AF095260, Mb.espanol | DSM
5982 | NRC 5912
Methanobacterium ivanovii VP Jain et al. 1988 DSM 2611 | Ivanov | OCM 140,
AF095261, Mb.ivanovi
Methanobacterium mobile AL Paynter and Hungate 1968 -> Methanomicrobium mobile
ATCC 35094 | DSM 1539, M59142, Mm.mobile
Methanobacterium oryzae VP Joulian et al. 2000 Fpi, AF028690 | DSM 11106

Methanobacterium palustre VP Zellner et al. 1990 F, AF095263, Mb.palustr | DSM 3108
Methanobacterium ruminantium AL Smith and Hungate 1958 -> Methanobrevibacter
ruminantium DSM 1093, AF414046
Methanobacterium subterraneum VP Kotelnikova et al. 1998 A8p, X99044, Mb.subterr
| DSM 11074, X99044, Mb.subterr
Methanobacterium thermaggregans VP Blotevogel and Fischer 1988 ATCC 43168 |

DSM 3266 | OCM 141, AF095264, Mb.thaggre
10
In Ludw ig and K le nks ch apte r, the y ind icate that t he Ha lob ac teriales , M etha nomic ro bia les an d Therm oplasm atales s hare a c omm on roo t
with M etha noba cte riales, bran ch ing off of t he ?rst two. L udwig indic ates th at h e wa s not able to s tably re so lv e a rela tio nsh ip amo ng the Meth a-
no microbiales, H alo bacteria les and M etha noba cte riales with the A rch aeog lob ale s, M ethan oc occ ales , Thermoc oc c ale s and M etha nop yrales .
He makes n o m ention of the Meth anosarcina les wh ich is c lea rly ev id ent in the RDP tree.
11
M etha noth ermob act er de?uvii comb. nov. is prop osed in Volume 1 o f B ergey s Man ual of S y ste matic Bac teriolo gy , 2nd Ed .
13
Methanobacterium thermalcaliphilum VP Blotevogel et al. 1988 = Methanobacterium

thermautotrophicum (senior heterotypic synonym) AC60 | ATCC 43169 | DSM
3267
Methanobacterium thermautotrophicum AL Zeikus and Wolfe 1972 = Methanobac-
terium thermoformicicum (junior heterotypic synonym) = Methanobacterium ther-
malcaliphilum (junior heterotypic synonym) -> Methanothermobacter thermau-
totrophicus DH, X68720 | DSM 1053 | ATCC 29096
Methanobacterium thermo?exum VP Kotelnikova et al. 1994 -> Methanothermobacter
thermo?exus IDZ, X99047, Mbt.th?ex | DSM 7268, X99047, Mbt.th? ex | VKM
B-1963, X99047, Mbt.th?ex 12
Methanobacterium thermoformicicum VP Zhilina and Ilarionov 1986 = Methanobac-
terium thermautotrophicum (senior heterotypic synonym) DSM 3720 | INMI
Z-245, X68712, Mb.tauZ245
Methanobacterium thermophilum VP Laurinavichus et al. 1990 -> Methanothermobac-
ter thermophilus M, X99048, Mbt.thphil | DSM 6529, X99048, Mbt.thphil | VKM
B-1786, X99048, Mbt.thphil 13
Methanobacterium uliginosum VP Knig 1985 P2St | DSM 2956
Methanobacterium wolfei VP Winter et al. 1985 -> Methanothermobacter wolfeii
ATCC 43096 | DSM 2970, X89406
Genus II. Methanobrevibacter VP
Methanobrevibacter ruminantium VP (T) (Smith and Hungate 1958) Balch and Wolfe
1981 <- Methanobacterium ruminantium (basonym) M1 | DSM 1093, AF414046
Methanobrevibacter arboriphilicus VP (Zeikus and Henning 1975) Balch and Wolfe
1981 <- Methanobacterium arbophilicum (basonym) DH1, AY196665 | ATCC
33747 | DSM 1125
Methanobrevibacter acididurans VP Savant et al. 2002 ATM, AF242652 | MCM B 613
| OCM 804
Methanobrevibacter curvatus VP Leadbetter and Breznak 1997 RFM-2, U62533,

Mbb.curvat | DSM 11111
Methanobrevibacter cuticularis VP Leadbetter and Breznak 1997 RFM-1, U41095,
Mbb.cuticl | DSM 11139
Methanobrevibacter ?liformis VP Leadbetter et al. 1998 RFM-3, U82322, Mbb.? lfor |
DSM 11501
Methanobrevibacter gottschalkii VP Miller and Lin 2002 HO, U55239 | DSM 11977 |
OCM 813
Methanobrevibacter oralis VP Ferrari et al. 1995 ZR | DSM 7256
Methanobrevibacter smithii VP Balch and Wolfe 1981 PS, U55233, Mbb.smithi | ATCC
3506 | DSM 861
Methanobrevibacter thaueri VP Miller and Lin 2002 CW, U55236 | DSM 11955 | OCM
817
Methanobrevibacter woesei VP Miller and Lin 2002 GS, U55237 | DSM 11979 | OCM
815
Methanobrevibacter wolinii VP Miller and Lin 2002 SH, U55240 | DSM 11976 | OCM
814
Genus III. Methanosphaera VP
Methanosphaera stadtmanae VP (T) Miller and Wolin 1985 MCB-3 | DSM 3091,
M59139, Mpr.stadtm
Methanosphaera cuniculi VP Biavati et al. 1990 1R7 | DSM 4103
Genus IV. Methanothermobacter VP
Methanothermobacter de?uvii (Kotelnikova et al. 1994) Boone 2001 comb. nov. <-
Methanobacterium de?uvii (basonym) ADZ, X99046, Mbt.d?uvi | DSM 7466,
X99046, Mbt.d?uvi | OCM 570 | VKM B-1962, X99046, Mbt.d?uvi
12
Me than otherm obacter th ermo?exus co mb. nov. is propo sed in Volu me 1 of B ergey s M anua l o f Sy s tema tic B act eriology , 2n d E d.
13
Me than otherm obacter th ermoph ilus co mb. nov. is propo sed in Volu me 1 of B ergey s M anua l o f Sy s tema tic B act eriology , 2n d E d.
14
Methanothermobacter marburgensis VP Wasserfallen et al. 2000 Marburg, X15364,

Mb.tautotr | DSM 2133 | OCM 82
Methanothermobacter thermautotrophicus VP (Zeikus and Wolfe 1972) Wasserfallen et
al. 2000 <- Methanobacterium thermautotrophicum (basonym) DH, X68720,
Mb.tauDELH | ATCC 29096 | DSM 1053
Methanothermobacter thermo?exus (Kotelnikova et al. 1994) Boone 2001 comb. nov.
<- Methanobacterium thermo?exum (basonym) IDZ, X99047, Mbt.th?ex | DSM
7268, X99047, Mbt.th?ex | OCM 571 | VKM B-1963, X99047, Mbt.th? ex
Methanothermobacter thermophilus (Laurinavichus et al. 1990) Boone 2001 comb.
nov. <- Methanobacterium thermophilum (basonym) M, X99048, Mbt.thphil |
OCM 231 | DSM 6529, X99048, Mbt.thphil
Methanothermobacter wolfeii VP (Winters et al. 1985) Wasserfallen et al. 2000 <-
Methanobacterium wolfei (basonym) ATCC 43096 | DSM 2970, X89406 | OCM
154
Family II. Methanothermaceae VP
Genus I. Methanothermus VP (T)
Methanothermus fervidus VP (T) Stetter et al. 1982 DSM 2088, M59145, Mt.fervidu
Methanothermus sociabilis VP Lauerer et al. 1986 DSM 3496
Class II. Methanococci VP
Order I. Methanococcales VP (T)
Family I. Methanococcaceae VP
Genus I. Methanococcus AL (T)
Methanococcus vannielii AL (T) Stadtman and Barker 1951 SB, AY196675 | ATCC 35089
| DSM 1224
Methanococcus deltae VP Corder et al. 1988 = Methanococcus maripaludis (senior

heterotypic synonym) Delta RC, U38485, Mc.deltae2 | ATCC 35294 | DSM 2771
Methanococcus fervens VP Jeanthon et al. 1999 -> Methanocaldococcus fervens
AG86, AF056938, Mcd.ferven | DSM 4213, AF056938, Mcd.ferven
Methanococcus frisius VP Blotevogel et al. 1986 -> Methanosarcina frisia C 16 | DSM
3318 | DSM 3318
Methanococcus halophilus VP Zhilina 1984 -> Methanohalophilus halophilus DSM
3094 | INMI Z-7982 | OCM 160
Methanococcus igneus VP Burggraf et al. 1990 -> Methanotorris igneus Ko15 | DSM
5666, M59125, Mc.igneus 14
Methanococcus infernus VP Jeanthon et al. 1998 -> Methanocaldococcus infernus ME
| DSM 11812, AF025822, Mc.inferns
Methanococcus jannaschii VP Jones et al. 1984 -> Methanocaldococcus jannaschii

JAL-1 | DSM 2661, M59126, Mc.jannasc
Methanococcus maripaludis VP Jones et al. 1984 = Methanococcus deltae (junior het-
erotypic synonym) JJ, U38484, Mc.maripa2 | DSM 2067
Methanococcus mazei AL Barker 1936 -> Methanosarcina mazei S-6, AJ012095 | DSM
2053, U20151
Methanococcus thermolithotrophicus VP Huber et al. 1984 -> Methanothermococcus
thermolithotrophicus DSM 2095, M59128, Mc.thlitho
Methanococcus voltae VP Balch and Wolfe 1981 emend. Ward et al. 1989 PS, U38461,
Mc.voltae2 | ATCC 33273 15 , M59290, Mc.voltae | DSM 1537
Methanococcus vulcanius VP Jeanthon et al. 1999 -> Methanocaldococcus vulcanius
M7, AF051404, Mcd.vulcan | DSM 12094
Genus II. Methanothermococcus VP
14
Me than otorris igneu s com b. nov. is prop ose d in Volume 1 o f B ergey s Ma nual of Sy st emat ic Ba cte riology , 2 nd E d.
15
A ltho ugh this ATCC accession n umbe r appe ars in th e lite ra ture, a query of t he ATCC da taba se re ve als tha t it is no t in their holdings .
15
Methanothermococcus thermolithotrophicus (Huber et al. 1984) Whitman 2001 comb.

nov. 16 <- Methanococcus thermolithotrophicus (basonym) SN-1 | DSM 2095,
M59128, Mc.thlitho
Methanothermococcus okinawensis VP Takai et al. 2002 IH1, AB057722 | DSM 14208
| JCM 11175
Family II. Methanocaldococcaceae VP

Genus I. Methanocaldococcus VP (T)
Methanocaldococcus fervens (Jeanthon et al. 1999) Whitman 2001 comb. nov. 17 <-
Methanococcus fervens (basonym) AG86, AF056938, Mcd.ferven | DSM 4213,
AF056938, Mcd.ferven
Methanocaldococcus indicus VP LHaridon et al. 2003 SL43, AF547621 | DSM 15027
| JCM 11886
Methanocaldococcus infernus VP (Jeanthon et al. 1998) Whitman 2001 18 <-

Methanococcus infernus (basonym) ME | DSM 11812, AF025822, Mc.inferns
Methanocaldococcus jannaschii VP (Jones et al. 1984) Whitman 2001 <- Methanococ-
cus jannaschii (basonym) JAL-1 | DSM 2661, M59126, Mc.jannasc
Methanocaldococcus vulcanius VP (Jeanthon et al. 1999) Whitman 2001 19 <-
Methanococcus vulcanius (basonym) M7, AF051404, Mcd.vulcan | DSM 12094
Genus II. Methanotorris VP
Methanotorris igneus VP (T) (Burggraf et al. 1990) Whitman 2001 20 <- Methanococcus
igneus (basonym) Kol5 | DSM 5666, M59125, Mc.igneus
Class III. Methanomicrobia " 21
"
Order I. Methanomicrobiales VP (T)

Family I. Methanomicrobiaceae VP
Genus I. Methanomicrobium VP (T)
Methanomicrobium mobile VP (T) (Paynter and Hungate 1968) Balch and Wolfe 1981 <-
Methanobacterium mobile (basonym) BP | ATCC 35094 | DSM 1539, M59142,
Mm.mobile
Methanomicrobium paynteri VP Rivard et al. 1984 -> Methanolacinia paynteri
G-2000, AY196678 | ATCC 33997 | DSM 2545
Genus II. Methanoculleus VP
Methanoculleus bourgensis VP (T) (Ollivier et al. 1986) Maestrojun et al. 1990 <-
Methanogenium bourgense (basonym) MS2, AF095269, AF095269 | DSM 3045 |
OGC 15
Methanoculleus chikugoensis VP Dianou et al. 2001 MG62, AB038795 | DSM 13459 |
JCM 10825
Methanoculleus marisnigri VP (Romesser et al. 1981) Maestrojun et al. 1990 <-
Methanogenium marisnigri (basonym) JR1 | ATCC 35101 | DSM 1498, M59134,
Mcu.marisn | OGC 56
Methanoculleus oldenburgensis VP Blotevogel et al. 1998 CB-1 | DSM 6216
16
No te that a subculture of the type st ra in is only dep osited in one pu blic c ollec tion or m ay ot herwis e be in viola tio n o f R ule s 27(3) and /or
17
30 (3 a-b,4) a s eme nded by the Ju dicia l Comm ission in 1 999 (IJS EM 50 : 2239 224 4).Note tha t a s ubc ulture o f th e t ype s train is only dep os ited
in o ne pub lic co llection o r may othe rwise b e in violation of Rules 27 (3 ) and /or 3 0(3a-b,4 ) as e men ded by t he Ju dic ia l Com mis s ion in 1999
(IJSE M 50: 223 922 44).
18
19
20
21
S. Turner (NCB I) has indicated th at the Me thano co cci, a s forme d in the e arlier releas es of the O utline w as pa ra phy le tic . G arrity a nd Lilbu rn
ha ve co n?rm ed that the Me thano microbiales an d M ethan os arcinales were more clos ely re lat ed in large s ca le hea tmap s than either g ro up was
to th e Me thano co cci, w hich are in turn m ore closely related t o Thermoc oc c ale s an d Arc haea ogloba les . NCB I c urre ntly lis ts th os e tax a within
the Met hano mic robiales a nd M etha nosarcinales as orders inc ertae se dis . W e ten tative ly as crib e the se orders to the clas s M etha nom ic ro bia
ba sed on prio rity.
16
Methanoculleus olentangyi VP (Corder et al. 1988) Maestrojun et al. 1990 <-

Methanogenium olentangyi (basonym) RC/ER, AF095270, Mcu.olent2 | ATCC
35293 | DSM 2772
Methanoculleus palmolei VP Zellner et al. 1998 INSLUZ | DSM 4273, Y16382,
Mcu.palmol
Methanoculleus submarinus VP Mikucki et al. 2003 Nankai-1, AF531178 | DSM 15122
| OCM 780, AF531178 | SMCC 780W
Methanoculleus thermophilicus VP (Rivard and Smith 1982) Maestrojun et al. 1990

<- Methanogenium thermophilicum (basonym) CR-1, AB065297 | ATCC 33837 |
DSM 2373
Genus III. Methanofollis VP
Methanofollis tationis VP (T) (Zabel et al. 1986) Zellner et al. 1999 <- Methanogenium
tationis (basonym) Chile 9 | DSM 2702, AF095272, Mf.tationi | OCM 43
Methanofollis aquaemaris VP Lai and Chen 2001 N2F9704, AF262035 | OCM 746 |
CCRC 16166
Methanofollis liminatans VP (Zellner et al. 1990) Zellner et al. 1999 <- Methanogenium
liminatans (basonym) GKZPZ, AF095271, Mf.liminat | DSM 4140
Genus IV. Methanogenium VP
Methanogenium cariaci VP (T) Romesser et al. 1981 emend. Maestroju n et al. 1990 JR
1 | ATCC 35093 | DSM 1497, M59130, Mg.cariaci | OCM 49
Methanogenium aggregans VP Ollivier et al. 1985 -> Methanocorpusculum aggregans
Mst | DSM 3027 | OCG 21
Methanogenium bourgense VP Ollivier et al. 1986 -> Methanoculleus bourgensis MS

2, AF095269 | DSM 3045
Methanogenium frigidum VP Franzmann et al. 1997 Ace-2 | OCM 469, AF009219 |
SMCC 459W
Methanogenium frittonii VP Harris et al. 1996 FR-4 | DSM 2832 | OCM 200
Methanogenium liminatans VP Zellner et al. 1990 -> Methanofollis liminatans
GKZPZ, AF095271, Mf.liminat | DSM 4140
Methanogenium marinum VP Chong et al. 2003 AK-1 | DSM 15558 | OCM 752
Methanogenium marisnigri VP Romesser et al. 1981 -> Methanoculleus marisnigri
JR 1 | ATCC 35101 | DSM 1498, M59134, Mcu.marisn
Methanogenium olentangyi VP Corder et al. 1988 -> Methanoculleus olentangyi
RC/ER, AF095270 | ATCC 35293 | DSM 2722
Methanogenium organophilum VP Widdel et al. 1989 CV | DSM 3596, M59131,
Mg.organop | OCM 72
Methanogenium tationis VP Zabel et al. 1986 -> Methanofollis tationis DSM 2702,
AF095272, Mf.tationi
Methanogenium thermophilicum VP Rivard and Smith 1982 -> Methanoculleus ther-
mophilicus CR-1, AB065297 | ATCC 33837 | DSM 2373
Genus V. Methanolacinia VP
Methanolacinia paynteri VP (T) (Rivard et al. 1984) Zellner et al. 1990 <- Methanomi-
crobium paynteri (basonym) G-2000, AY196678 | ATCC 33997 | DSM 2545
Genus VI. Methanoplanus VP
Methanoplanus limicola VP (T) Wildgruber et al. 1984 DSM 2279, M59143, Mpl.limico
Methanoplanus endosymbiosus VP van Bruggen et al. 1986 MC1 | DSM 3599, Z29435,
Mpl.endsym
Methanoplanus petrolearius VP Ollivier et al. 1998 DSM 11571 | OCM 486 | SEBR
4847, U76631, Mpl.petrlr
Family II. Methanocorpusculaceae VP 22
Genus I. Methanocorpusculum VP (T)
Methanocorpusculum parvum VP (T) Zellner et al. 1988 XII | ATCC 43721 | DSM 3823,
M59147, Mcr.parvum
22
Hea tmap s of archae al seq uences shows th at M etha nocorpus cu lum is t he d is tantly mem ber o f the Meth ano mic robiale s
17
Methanocorpusculum aggregans VP (Ollivier et al. 1985) Xun et al. 1989 <- Methanoge-
nium aggregans (basonym) MSt | DSM 3027 | OGC 21
Methanocorpusculum bavaricum VP Zellner et al. 1989 SZSXXZ, AF042197,
Mcr.bavarc | SZSXXZ, AF095266, Mcr.bavar2 | DSM 4179
Methanocorpusculum labreanum VP Zhao et al. 1989 Z, AF095267, Mcr.labre2 | DSM
4855 | OGC 1
Methanocorpusculum sinense VP Zellner et al. 1989 China Z, AF095268, Mcr.sinens |
DSM 4274
Family III. Methanospirillaceae VP
Genus I. Methanospirillum AL (T)
Methanospirillum hungatei AL (T) Ferry et al. 1974 ATCC 27890 | DSM 864 | OCM 16
Genera incertae sedis
Genus I. Methanocalculus VP
Methanocalculus halotolerans VP (T) Ollivier et al. 1998 OCM 470 | SEBR 4845,
AF033672
Methanocalculus chunghsingensis VP Lai et al. 2004 K1F9705b, AF347025 | DSM
14539 | OCM 772
Methanocalculus pumilus VP Mori et al. 2000 MHT-1, AB008853 | DSM 12632 | JCM
10627
Methanocalculus taiwanensis VP Lai et al. 2002 P2F9704a, AF172443 | CCRC 16182 |
DSM 14663 | OCM 671
Order II. Methanosarcinales VP
Family I. Methanosarcinaceae VP
Genus I. Methanosarcina AL (T)
Methanosarcina barkeri AL (T) Schnellen 1947 MS | ATCC 43569 | DSM 800, AJ012094,
Msr.barke2 | OCM 38
Methanosarcina acetivorans VP Sowers et al. 1986 C2A | ATCC 35395 | DSM 2834,
M59137, Msr.acetiv | OCM 95
Methanosarcina baltica VP von Klein et al. 2002 GS1-A, AJ238648 | DSM 14042 | JCM
11281
Methanosarcina frisia VP (Blotevogel et al. 1986) Blotevogel and Fischer 1989 =
Methanosarcina mazei (senior heterotypic synonym) <- Methanococcus frisius
(basonym) C16 | ATCC 43330 | DSM 3318
Methanosarcina lacustris VP Simankova et al. 2002 ZS, AF432127 | DSM 13486 | VKM
B-2268
Methanosarcina mazei VP (Barker 1936) Mah and Kuhn 1984 = Methanosarcina frisia
(junior heterotypic synonym) <- Methanococcus mazei (basonym) S-6, U20151,
Msr.mazei1 | ATCC 43340 | DSM 2053, AJ012095, Msr.mazei4
Methanosarcina methanica (Smit 1930) Kluyver and van Niel 1936 nom. rej.
Methanosarcina semesiae VP Lyimo et al. 2000 MD1 | DSM 12914, AJ012742
Methanosarcina siciliae VP (Stetter and Knig 1989) Ni et al. 1994 <- Methanolobus
siciliae (basonym) T4/M, U20153, Msr.sicili | DSM 3028
Methanosarcina thermophila VP Zinder et al. 1985 TM-1 | DSM 1825, M59140,
Msr.thmoph
Methanosarcina vacuolata VP Zhilina and Zavarzin 1987 Z-761, U20150, Msr.vacuol |
ATCC 35090 | DSM 1232 | OCM 85
Genus II. Methanococcoides VP
Methanococcoides methylutens VP (T) Sowers and Ferry 1985 TMA-10 | ATCC 33938 |
DSM 2657, M59127, Mcc.mluten | OCM 158
Methanococcoides burtonii VP Franzmann et al. 1993 DSM 6242, X65537, Mcc.burton
| OCM 468
Genus III. Methanohalobium VP

Methanohalobium evestigatum VP (T) Zhilina and Zavarzin 1988 Z-7303, U20149,
Mhb.evesti | DSM 3721 | OCM 161
Genus IV. Methanohalophilus VP
18
Methanohalophilus mahii VP (T) Paterek and Smith 1988 SLP (Salt Lake Paterek) | ATCC
35705 | DSM 5219, M59133, Mha.mahii | OCM 68
Methanohalophilus halophilus VP (Zhilina 1984) Wilharm et al. 1991 <- Methanococcus
halophilus (basonym) DSM 3094 | INMI Z-7982 | OCM 160
Methanohalophilus oregonensis VP Liu et al. 1990 -> Methanolobus oregonensis
WAL1 | DSM 5435, U20152, Mlo.oregon | OGI 99
Methanohalophilus portucalensis VP Boone et al. 1993 FDF-1, AY290717 | DSM 7471
| OCM 59
Methanohalophilus zhilinae VP Mathrani et al. 1988 -> Methanosalsum zhilinae

WeN5 | DSM 4017 | OCM 62
Genus V. Methanolobus VP
Methanolobus tindarius VP (T) Knig and Stetter 1983 Tindari 3 | ATCC 35996 | DSM
2278, M59135, Mlo.tindar | OCM 150
Methanolobus bombayensis VP Kadam et al. 1994 B-1, U20148, Mlo.bombay | DSM
7082 | OCM 438
Methanolobus oregonensis (Liu et al. 1990) Boone 2001 comb. nov. <-
Methanohalophilus oregonensis (basonym) WAL-1, U20152, Mlo.oregon |
DSMZ 5435 | OCM 99
Methanolobus siciliae VP Stetter and Knig 1989 emend. Ni and Boone 1991 ->
Methanosarcina siciliae T4/M, U20153, Msr.sicili | DSM 3028
Methanolobus taylorii VP Oremland and Boone 1994 GS-16, U20154, Mlo.taylor | DSM
9005 | OCM 58
Methanolobus vulcani VP Stetter et al. 1989 emend. Kadam and Boone 1995 PL-12/M,
U20155, Mlo.vulcan | DSM 3029 | OCM 157
Genus VI. Methanomethylovorans VP
Methanomethylovorans hollandica VP Lomans et al.2004 DMS1, AF120163 | DSM
15978 | OCM 838
Genus VII. Methanimicrococcus VP
Methanimicrococcus blatticola VP (T) Sprenger et al. 2000 PA, AJ238002 | DSM 13328
Genus VIII. Methanosalsum VP
Methanosalsum zhilinae(T) (Mathrani et al. 1988) Boone and Baker 2001 comb. nov. <-
Methanohalophilus zhilinae (basonym) WeN5 | DSM 4017 | OCM 62
Family II. Methanosaetaceae VP
Genus I. Methanosaeta VP (T)
Methanosaeta concilii VP (T) (Patel 1985) Patel and Sprott 1990 <- Methanothrix concilii
(basonym) GP6 | ATCC 35969 | DSM 3671, AF414037 | NRC 2989 | OGC 69
Methanosaeta thermoacetophila (Nozhevnikova and Chudina 1988) Patel and Sprott
1990 nom. rej. <- Methanothrix thermoacetophila (basonym) Z517 | DSM 4774
Methanosaeta thermophila VP (Kamagata et al. 1992) Boone and Kamagata 1998 <-
Methanothrix thermophila (basonym) PT, AB071701 | DSM 6194
Class IV. Halobacteria VP
Order I. Halobacteriales VP (T)
Family I. Halobacteriaceae AL
Genus I. Halobacterium AL (T)
Halobacterium salinarum AL (T) (Harrison and Kennedy 1922) Elazari-Volcani 1957 =
Halobacterium cutirubrum (junior heterotypic synonym) = Halobacterium halo-
bium (junior heterotypic synonym) ATCC 33171 | DSM 3754, AJ496185 | NCIMB
764 | NRC 34002
Halobacterium cutirubrum AL (Lochhead 1934) Elazari-Volcani 1957 = Halobacterium
salinarum (senior heterotypic synonym) ATCC 33170 | DSM 669 | NRC 34001
Halobacterium denitri?cans VP Tomlinson et al. 1986 -> Haloferax denitri?cans S1 |
ATCC 35960, D14128, Hf.denitrf | DSM 4425
Halobacterium distributum VP Zvyagintseva and Tarasov 1989 -> Halorubrobacterium
distributum I-M | VKM B-1733
19
Halobacterium halobium AL (Petter 1931) Elazari-Volcani 1957 = Halobacterium sali-

narum (senior heterotypic synonym) NCIB 8720
Halobacterium lacusprofundi VP Franzmann et al. 1989 -> Halorubrobacterium lacus-
profundi ACAM 34, X82170, Hr.lacspr2 | DSM 5036 | JCM 8891, U17365, Hr.lac-
spro | UQM 3107
Halobacterium mediterranei VP Rodriguez-Valera 1983 -> Haloferax mediterranei
R-4 | ATCC 33500, D11107, Hf.mediter | CCM 3361 | DSM 1411
Halobacterium pharaonis VP Soliman and Trper 1983 -> Natronobacterium pharao-
nis Gabara | DSM 2160
Halobacterium saccharovorum AL Tomlinson and Hochstein 1977 -> Halorubrobac-
terium saccharovorum ATCC 29252 | DSM 1137 | JCM 8865, U17364, Hr.saccha2
Halobacterium sodomense VP Oren 1983 -> Halorubrobacterium sodomense RD-26
| ATCC 33755, D13379, Hr.sodomen | ATCC 33755, X82169, Hr.sodome2 | DSM
3755 | NCMB 2197

Halobacterium trapanicum AL (Petter 1931) Elazari-Volcani 1957 -> Halorubrum tra-
panicum DSM 5647 | NRC 34021, X82168, Hr.trapan2
Halobacterium vallismortis AL Gonzalez et al. 1979 -> Haloarcula vallismortis ATCC
29715 | DSM 3756
Halobacterium volcanii AL Mullakhanbhai and Larson 1975 -> Haloferax volcanii
DSM 3757 | NCMB 2012
Genus II. Haloarcula VP
Haloarcula vallismortis VP (T) (Gonzalez et al. 1979) Torreblanca et al. 1986 <-
Halobacterium vallismortis (basonym) JF 54 | ATCC 29715 | CCM 3404 | DSM
3756 | NCMB 2082
Haloarcula argentinensis VP Ihara et al. 1997 arg-1, D50849, Har.argent | DSM 12282 |
JCM 9737
Haloarcula hispanica VP Juez et al. 1986 Y27 | ATCC 33960, U68541, Har.hispan | DSM
4426 | NCMB 2187
Haloarcula japonica VP Takashina et al. 1991 TR-1, D28872, Har.japoni | DSM 6131 |
JCM 7785
Haloarcula marismortui VP (ex Elazari-Volcani) Oren et al. 1990 ATCC 43049 | DSM
3752
Haloarcula mukohataei VP Ihara et al. 1997 -> Halomicrobium mukohataei arg-2,
D50850, Har.mukoht | ATCC 700874 | DSM 12286 | JCM 9738 | CIP 105174 | NCIMB
13541, D50850
Haloarcula quadrata VP Oren et al. 1999 DSM 11927, AB010964 | DSM 11927,
AB010965
Genus III. Halobaculum VP
Halobaculum gomorrense VP (T) Oren et al. 1995 DS2807 | DSM 9297
Genus IV. Halobiforma VP
Halobiforma haloterrestris VP (T) Hezayen et al. 2002 135, AF333760 | DSM 13078 |
JCM 11627
Halobiforma nitratireducens VP (Xin et al. 2001) Hezayen et al. 2002 <- Natronobac-
terium nitratireducens (basonym) C231, AB045012 | AS 1.1980 | JCM 10879
Genus V. Halococcus AL
Halococcus morrhuae AL (T) (Farlow 1880) Kocur and Hodgkiss 1973 ATCC 17082 |
CCM 537 | DSM 1307 | NCMB 787 | NRC 16008, D11106, Hc.morrhu3
Halococcus dombrowskii VP Stan-Lotter et al. 2002 H4, AJ420376 | ATCC BAA-364 |
DSM 14522 | NCIMB 13803
Halococcus saccharolyticus VP Montero et al. 1990 P-423 | ATCC 49257 | ATCC 49257,
AB004876, Hc.sacchar | CCM 4147 | DSM 5350
Halococcus salifodinae VP Denner et al. 1994 Blp, Z28387, Hc.salifod | ATCC 51437 |
DSM 8989 | DSM 8989, AB004877, Hc.salifo2
Halococcus turkmenicus VP Zvyagintseva and Tarasov 1989 -> Haloterrigena turk-
menica 4 | VKM B-1734, AB004878, Ht.turkmen
20
Genus VI. Haloferax VP

Haloferax volcanii VP (T) (Mullakhanbhai and Larsen 1975) Torreblanca et al. 1986 <-
Halobacterium volcanii (basonym) DS-2 | ATCC 29605 | CCM 2852 | DSM 3757 |
DSM 3757, K00421, Hf.volcani | NCMB 2012
Haloferax alexandrinus VP Asker and Ohta 2002 23 TM, AB037474 | NBRC 16590 | JCM
10717
Haloferax denitri?cans VP (Tomlinson et al. 1986) Tindall et al. 1989 <- Halobacterium
denitri?cans (basonym) S1 | ATCC 35960, D14128, Hf.denitrf | DSM 4425
Haloferax gibbonsii VP Juez et al. 1986 MA2.38 | ATCC 33959, D13378, Hf.gibbons |
DSM 4427 | NCMB 2188
Haloferax lucentense VP Gutierrez et al. 2004 Aa 2.2 | CCM 7023 | CECT 5871 | CIP
107410 | DSM 14919 | JCM 9276, AB081732 | NCIMB 13854
Haloferax mediterranei VP (Rodriguez-Valera 1983) Torreblanca et al. 1987 <-
Halobacterium mediterranei (basonym) R4 | ATCC 33500, D11107, Hf.mediter |
CCM 3361 | DSM 1411
Genus VII. Halogeometricum VP
Halogeometricum borinquense VP (T) Montalvo-Rodrguez et al. 1998 PR3, AF002984,
Hg.borinqu | ATCC 700274
Genus VIII. Halomicrobium VP
Halomicrobium mukohataei VP (T) Oren et al. 2002 <- Haloarcula mukohataei (ba-
sonym) arg-2 | ATCC 700874 | CIP 105174 | DSM 12286 | JCM 9738 | NCIMB
13541, D50850
Genus IX. Halorhabdus VP
Halorhabdus utahensis VP (T) Wain et al. 2000 AX-2, AF071880 | DSM 12940
Genus X. Halorubrum VP
Halorubrum saccharovorum VP (T) (Tomlinson and Hochstein 1977) McGenity and
Grant 1996 <- Halorubrobacterium saccharovorum (basonym) ATCC 29252 |
DSM 1137 | JCM 8865, U17364, Hr.saccha2 | NCIMB 2081, X82167, Hr.saccha3
Halorubrum coriense VP (Kamekura and Dyall-Smith 1996) Oren and Ventosa 1996 <-
Halorubrobacterium coriense (basonym) Ch2, L00922, Hb.spCh2_3 | ACM 3911
| DSM 10284
Halorubrum distributum VP (Zvyagintseva and Tarasov 1989) Oren and Ventosa 1996
<- Halorubrobacterium distributum (basonym) I-M | ATCC 51197 | JCM 9100,
D63572, Hr.distrib | NCIMB 13203 | VKM B-1733
Halorubrum lacusprofundi VP (Franzmann et al. 1989) McGenity and Grant 1996 <-
Halorubrobacterium lacusprofundi (basonym) ACAM 34, X82170, Hr.lacspr2 |
DSM 5036 | JCM 8891 | NCIMB 12997 | UQM 3107
Halorubrum sodomense VP (Oren 1983) McGenity and Grant 1996 <- Halorubrobac-
terium sodomense (basonym) RD-26 | ATCC 33755, D13379, Hr.sodomen | ATCC
33755, X82169, Hr.sodome2 | DSM 3755 | NCMB 2197
Halorubrum tebenquichense VP Lizama et al. 2002 ALT6-92, AJ276887 | CECT 5317 |
DSM 14210
Halorubrum terrestre VP Ventosa et al. 2004 4p | JCM 10247 | VKM B-1739, AB090169
Halorubrum trapanicum VP (Petter 1931) McGenity and Grant 1996 <- Halobacterium
trapanicum (basonym) DSM 5647 | NRC 34021, X82168, Hr.trapan2
Halorubrum vacuolatum VP (Mwatha and Grant 1993) Kamekura et al. 1997 <-
Natronobacterium vacuolatum (basonym) M24 | ATCC 51376 | DSM 8800 | JCM
9060, D87972, Hr.vacuola | NCIMB 13189
Genus XI. Halosimplex VP
Halosimplex carlsbadense VP (T) Vreeland et al. 2003 2-9-1 | ATCC BAA-75 | JCM
11222, AF320480
Genus XII. Haloterrigena VP
23
21
Haloterrigena turkmenica VP (T) (Zvyagintseva and Tarasov 1989) Ventosa et al. 1999
<- Halococcus turkmenicus (basonym) 4 | DSM 5511 | VKM B-1734, AB004878,
Ht.turkmen
Haloterrigena thermotolerans VP Montalvo-Rodrguez et al. 2000 PR5, AF115478 |
ATCC 700275, AF115478 | DSM 11552, AF115478
Genus XIII. Natrialba VP
Natrialba asiatica VP (T) Kamekura and Dyall-Smith 1996 172P1, D14123, str.172P1 |
DSM 12278 | JCM 9576
Natrialba aegyptia VP Hezayen et al. 2001 40, AF251941 | DSM 13077 | JCM 11194
Natrialba chahannaoensis VP Xu et al. 2001 C112, AJ004806 | AS 1.1977 | JCM 10990
Natrialba hulunbeirensis VP Xu et al. 2001 X21 | AS 1.1986, AF262026 | JCM 10989
Natrialba magadii VP (Tindall et al. 1984) Kamekura et al. 1997 <- Natronobacterium
magadii (basonym) MS3 | ATCC 43099 | CCM 3739 | DSM 3394 | NCMB 2190,
X72495, Nat.magadi
Natrialba taiwanensis VP Hezayen et al. 2001 B1T, D14124 | DSM 12281 | JCM 9577
Genus XIV. Natrinema VP
Natrinema pellirubrum VP (T) McGenity et al. 1998 NCIMB 786, AJ002947, Na.pel-
rubm
Natrinema pallidum VP McGenity et al. 1998 NCIMB 777, AJ002949, Na.pallidu
Natrinema versiforme VP Xin et al. 2000 XF10, AB023426 | ANMR 0149 | AS 1.2365
| JCM 10478
Genus XV. Natronobacterium VP

Natronobacterium gregoryi VP (T) Tindall et al. 1984 SP2 | ATCC 43098 | CCM 3738 |
DSM 3393 | NCMB 2189, D87970
Natronobacterium magadii VP Tindall et al. 1984 -> Natrialba magadii MS3 | ATCC
43099 | CCM 3739 | DSM 3394 | NCMB 2190, X72495, Nat.magadi
Natronobacterium nitratireducens VP Xin et al. 2001 -> Halobiforma nitratireducens
C231, AB045012 | AS 1.1980 | JCM 10879
Natronobacterium pharaonis VP (Soliman and Trper 1983) Tindall et al. 1984 <-
Halobacterium pharaonis (basonym) -> Natronomonas pharaonis ATCC 35678 |
DSM 2160
Natronobacterium vacuolatum VP Mwatha and Grant 1993 -> Halorubrum vacuolatum
M24 | DSM 8800 | NCIMB 13189
Genus XVI. Natronococcus VP

Natronococcus occultus VP (T) Tindall et al. 1984 SP4 | ATCC 43101 | CCM 3871 | DSM
3396 | NCMB 2192, Z28378, Ntc.occult
Natronococcus amylolyticus VP Kanai et al. 1995 Ah-36, D43628, Ntc.amylyt | DSM
10524 | JCM 9655
Genus XVII. Natronomonas VP
Natronomonas pharaonis VP (T) (Soliman and Trper 1983) Kamekura et al. 1997 <-
Natronobacterium pharaonis (basonym) Gabara | ATCC 35678 | DSM 2160 | JCM
8858, D87971, Ntm.pharao | NCIMB 2260
Genus XVIII. Natronorubrum VP
Natronorubrum bangense VP (T) Xu et al. 1999 A33, Y14028, Nnr.bangen | AS 1.1984
Natronorubrum tibetense VP Xu et al. 1999 GA33, AB005656 | AS 1.2123
Class V. Thermoplasmata VP
Order I. Thermoplasmatales VP (T)
Family I. Thermoplasmataceae VP
Genus I. Thermoplasma AL (T)
Thermoplasma acidophilum AL (T) Darland et al. 1970 122-1B2, M38637, Tpl.acidop |
AMRC-C165 | ATCC 25905 | DSM 1728
Thermoplasma volcanium VP Segerer et al. 1988 GSS1, AJ299215, AF339746 | ATCC
51530 | DSM 4299
Family II. Picrophilaceae VP
Genus I. Picrophilus VP (T)
22
Picrophilus oshimae VP (T) Schleper et al. 1996 KAW 2/2, X84901, Pph.oshima | DSM
9789
Picrophilus torridus VP Zillig et al. 1996 KAW 2/3 | DSM 9790
Family III. "Ferroplasmataceae"
Genus I. Ferroplasma VP
Ferroplasma acidiphilum VP (T) Golyshina et al. 2000 Y, AJ224936 | DSM 12658
Class VI. Thermococci VP
Order I. Thermococcales VP (T)
Family I. Thermococcaceae VP
Genus I. Thermococcus VP (T)
Thermococcus celer VP (T) Zillig 1983 ATCC 35543 | DSM 2476, M21529, Tc.celer
Thermococcus acidaminovorans VP Dirmeier et al. 2001 24 AEDII10, Y15935 | DSM
11906
Thermococcus aegaeus VP Arab et al. 2000 P5, AJ012643 | DSM 12767 | JCM 10828
Thermococcus aggregans VP Canganella et al. 1998 TY, Y08384, Tc.aggrgan | DSM
10597 | JCM 10137
Thermococcus alcaliphilus VP Keller et al. 1997 AEDII12 | DSM 10322, AB055121
Thermococcus barophilus VP Marteinsson et al. 1999 MP, U82237, Tc.barophl | CNCM
I-1946 | DSM 11836
Thermococcus chitonophagus VP Huber and Stetter 1996 GC74 | DSM 10152, X99570,
Tc.chitnph
Thermococcus fumicolans VP Godfroy et al. 1996 ST557, Z70250, Tc.fumicol | CIP
104680
Thermococcus gammatolerans VP Jolivet et al. 2003 EJ3, AF479014 | DSM 15229 | JCM
11827
Thermococcus gorgonarius VP Miroshnichenko et al. 1998 W-12 | DSM 10395,
AY099177
Thermococcus guaymasensis VP Canganella et al. 1998 TYS, Y08385, Tc.guaymas |
DSM 11113 | JCM 10136
Thermococcus hydrothermalis VP Godfroy et al. 1997 AL662, Z70244, Tc.hythrml |
CNCMI 1319
Thermococcus litoralis VP Neuner et al. 2001 NS-C | DSM 5473 | JCM 8560
Thermococcus paci?cus VP Miroshnichenko et al. 1998 P-4, Y16227, Tc.paci?c | DSM
10394
Thermococcus peptonophilus VP Gonzlez et al. 1996 OG-1, D37982, Tc.peptphl | DSM
10343 | JCM 9653
Thermococcus profundus VP Kobayashi et al. 1995 DT 5432, Z75233, Tc.profun3 |
ATCC 51592 | DSM 9503 | JCM 9378
Thermococcus sibiricus VP Miroshnichenko et al. 2001 25 MM739, AJ238992 | DSM
12597
Thermococcus siculi VP Grote et al. 2000 RG-20 | DSM 12349, AB010893
Thermococcus stetteri VP Miroshnichenko et al. 1990 DSM 5262 | K-3, Z75240,
Tc.stette2
Thermococcus waiotapuensis VP Gonz lez et al. 2001 26 WT1, AF134982 | DSM 12768
Thermococcus zilligii VP Ronimus et al. 1997 AN1, U76534 | DSM 2770
Genus II. Palaeococcus VP
Palaeococcus ferrophilus VP (T) Takai et al. 2000 JCM 10246 | DMJ, AB019239
Genus III. Pyrococcus VP
24
25
26
23
Pyrococcus furiosus VP (T) Fiala and Stetter 1986 Vc 1 | DSM 3638 | DSM 3638, U20163,
Pc.furios2
Pyrococcus glycovorans VP Barbier et al. 1999 AL585, Z70247 | CNCM I-2120
Pyrococcus horikoshii VP Gonzlez et al. 1999 JA-1, D87344 | JCM 9974
Pyrococcus woesei VP Zillig et al. 1988 DSM 3773
Class VII. Archaeoglobi VP
Order I. Archaeoglobales VP (T)
Family I. Archaeoglobaceae VP
Genus I. Archaeoglobus VP (T)
Archaeoglobus fulgidus VP (T) Stetter 1988 VC-16, X05567, Arg.fulgid | VC-16,
Y00275, Arg.fulgi3 | DSM 4304
Archaeoglobus profundus VP Burggraf et al. 1990 AV18 | DSM 5631, AF322392
Archaeoglobus vene?cus VP Huber et al. 1998 SNP6, Y10011, Arg.vene? | DSM 11195
Genus II. Ferroglobus VP
Ferroglobus placidus VP (T) Hafenbradl et al. 1997 AEDII12DO, X99565, Frr.placid |
DSM 10642, X99565, Frr.placid
Genus III. Geoglobus VP
Geoglobus ahangari VP (T) Kashe? et al. 2002 27 234, AF220165 | ATCC BAA-425
Class VIII. Methanopyri VP
Order I. Methanopyrales VP (T)
Family I. Methanopyraceae VP
Genus I. Methanopyrus VP (T)
Methanopyrus kandleri VP (T) Kurr et al. 1992 AV19, M59932, Mpy.kandl1 | DSM 6324
Domain Bacteria VP
Phylum BI. Aqui?cae VP 28
Class I. Aqui?cae VP
Order I. Aqui?cales VP (T)
Family I. Aqui?caceae VP
Genus I. Aquifex VP (T)
Aquifex pyrophilus VP (T) Huber and Stetter in Huber et al. 1992 Kol5a, M83548,
Aqu.pyroph | DSM 6858
Genus II. Calderobacterium VP 29
Calderobacterium hydrogenophilum VP (T) Kryukov et al. 1984 -> Hydrogenobacter
hydrogenophilus DSM 2913, Z30242, Cld.hgenph | INMI Z-829, Z30242,
Cld.hgenph
Genus III. Hydrogenobaculum VP 30
Hydrogenobaculum acidophilum VP (T) (Shima and Suzuki 1993) Sthr et al. 2001 <-
Hydrogenobacter acidophilus (basonym) 3H-1, D16296 | DSM 11251, Hdg.acidp
| JCM 8795
Genus IV. Hydrogenobacter VP

Hydrogenobacter thermophilus VP (T) Kawasumi et al. 1984 DSM 6534 | IAM 12695,
Z30214, Hdg.thphi2 | TK-6, Z30214, Hdg.thphi2
Hydrogenobacter acidophilus VP Shima and Suzuki 1993 -> Hydrogenobaculum aci-
dophilum 3H-1, D16296, Hdg.acidp | JCM 8795
Hydrogenobacter hydrogenophilus VP (Kryukov et al. 1984) Sthr et al. 2001 <- Calder-
obacterium hydrogenophilum (basonym) DSM 2913, Z30242, Cld.hgenph | INMI
Z-829, Z30242 | JCM 8158, Cld.hgenph
27
28
L udwig indicates t hat the AR B tre e sup ports th e A qui?cales .
29
Rea ssig nme nt of the n ome nclatu ra l type of Ca lde ro bacteriu mto Hyd ro geno bac ter prec lu des the add ition o f new sp ecies un les s the name
Calderob acterium is con se rved and a n ew type sp ecies is est ablis hed by the ac tio n of the Ju dic ia l Comm is sion
30
He atma ps to benchm arks sho w tha t Hydroge nob acu lum is ra ther re mote to Aq uife x.
24
Hydrogenobacter subterraneus VP Takai et al. 2001 31 HGP1, AB026268 | NBRC 16485

| JCM 10660
Genus V. Hydrogenothermus VP
Hydrogenothermus marinus VP (T) Sthr et al. 2001 VM1, AJ292525 | DSM 12046 | JCM
10974
Genus VI. Persephonella VP
Persephonella marina VP (T) Gotz et al. 2002 EX-H1, AF188332 | DSM 14350 | OCM
794
Persephonella guaymasensis VP Gotz et al. 2002 EX-H2, AF385630 | DSM 14351 |
OCM 975
Persephonella hydrogeniphila VP Nakagawa et al. 2003 29W, AB086419 | DSM 15103
| JCM 11663
Genus VII. Sulfurihydrogenibium VP

Sulfurihydrogenibium subterraneum VP (T) Takai et al. 2003 HGMK-1, AB071324 |
ATCC BAA-562 | DSM 15120 | JCM 11477
Sulfurihydrogenibium azorense VP Aguiar et al. 2004 Az-Fu1, AF528192 | DSM 15241
| OCM 825
Genus VIII. Thermocrinis VP

Thermocrinis ruber VP (T) Huber et al. 1999 OC 1/4, AJ005640, Tcr.ruber1 | DSM 12173,
AJ005640, Tcr.ruber1 | DSM 12173
Thermocrinis albus VP Eder and Huber 2002 HI 11/12, AJ278895 | DSM 14484 | JCM
11386
Genus I. Balnearium VP
Balnearium lithotrophicum VP (T) Takai et al. 2003 17S, AB105049 | ATCC BAA-736 |
JCM 11970
Genus II. Desulfurobacterium VP 32
Desulfurobacterium thermolithotrophum VP (T) LHaridon et al. 1998 BSA, AJ001049
| DSM 11699
Genus III. Thermovibrio VP

Thermovibrio ruber VP (T) Huber et al. 2002 ED11/3LLK | DSM 14644, AJ316619 | JCM
11468
Thermovibrio ammoni?cans VP Vetriani et al. 2004 DSM 15698 | HB-1, AY263403 |
JCM 12110
Phylum BII. Thermotogae VP 33
Class I. Thermotogae VP
Order I. Thermotogales VP (T)
Family I. Thermotogaceae VP
Genus I. Thermotoga VP (T)
Thermotoga maritima VP (T) Huber et al. 1986 MSB8, M21774, Tt.maritim | DSM 3109,
M21774, Tt.maritim
Thermotoga el?i VP Ravot et al. 1995 DSM 9442 | SEBR 6459, X80790, Tt.el? i
Thermotoga hypogea VP Fardeau et al. 1997 DSM 11164 | SEBR 7054, U89768, Tt.hy-
pogea
Thermotoga lettingae VP Balk et al. 2002 TMO, AF355615 | DSM 14385 | ATCC BAA-
301
Thermotoga naphthophila VP Takahata et al. 2001 RKU-10, AB027017 | DSM 13996 |
JCM 10882
Thermotoga neapolitana VP Jannasch et al. 1989 NS-E | ATCC 49049 | DSM 4359,
AB039768
31
32
Lu dwig in dicate s that Desulf urobacterium (sic De sulfob act erium the rm olitho tro phum ) may rep re sen t a mem ber of a s epa ra te p hylum . No
seque nce d ata were available from the RDP, Re lea se 8.0 .
33
L udwig indicates t hat ARB t re e supp orts the The rm otog ale s.
25
Thermotoga petrophila VP Takahata et al. 2001 RKU-1, AB027016 | DSM 13995 | JCM
10881
Thermotoga subterranea VP Jeanthon et al. 2000 SL1, U22664 | DSM 9912
Thermotoga thermarum VP Windberger et al. 1992 LA3 | DSM 5069, AB039769
Genus II. Fervidobacterium VP
Fervidobacterium gondwanense VP Andrews and Patel 1996 AB39, Z49117, Fer.gnd-
wns | ACM 5017, Z49117, Fer.gndwns
Fervidobacterium islandicum VP Huber et al. 1991 H21, M59176, Fer.island | DSM
5733
Fervidobacterium nodosum VP (T) Patel et al. 1985 Rt17-B | ATCC 35602, M59177,
Fer.nodosm | DSM 5306
Fervidobacterium pennivorans VP Friedrich and Antranikian 1999 Ven5 | DSM 9078
Genus III. Geotoga VP
Geotoga petraea VP (T) Davey et al. 1993 T5, L10658, Got.petrae | ATCC 51226
Geotoga subterranea VP Davey et al. 1993 CC-1, L10659, Got.subter | ATCC 51225
Genus IV. Marinitoga VP
Marinitoga camini VP (T) Wery et al. 2001 MV1075, AJ250439 | CNCM I-2413 | DSM
13578
Marinitoga piezophila VP Alain et al. 2002 KA3, AF326121 | DSM 14283 | JC 11233
Genus V. Petrotoga VP
Petrotoga miotherma VP (T) Davey et al. 1993 42-6, L10657, Pet.miothr | ATCC 51224 |
DSM 10691
Petrotoga mexicana VP Miranda-Tello et al. 2004 MET12, AY125964 | CIP 107371 |
DSM 14811
Petrotoga mobilis VP Lien et al. 1998 SJ95, Y15479, Pet.mobili | DSM 10674
Petrotoga olearia VP LHaridon et al. 2002 SL24, AJ311703 | DSM 13574 | JCM 11234
Petrotoga sibirica VP LHaridon et al. 2002 SL25, AJ311702 | DSM 13575 | JCM 11235
Genus VI. Thermosipho VP
Thermosipho africanus VP (T) Huber et al. 1989 Ob7 | DSM 5309 | DSM 5309, M83140,
Tsi.africa
Thermosipho geolei VP LHaridon et al. 2001 SL31 | DSM 13256, AJ272022 | JCM
10986
Thermosipho japonicus VP Takai and Horikoshi 2000 IHB1, AB024932 | JCM 10495
Thermosipho melanesiensis VP Antoine et al. 1997 BI429, Z70248, Tsi.melane | CIP
104789 | DSM 12029
Phylum BIII. Thermodesulfobacteria VP 34
Class I. Thermodesulfobacteria VP
Order I. Thermodesulfobacteriales VP (T)
Family I. Thermodesulfobacteriaceae VP
Genus I. Thermodesulfobacterium VP (T)
Thermodesulfobacterium commune VP (T) Zeikus et al. 1995 YSRA-1, L10662,
Tdb.commun | ATCC 33708 | DSM 2178
Thermodesulfobacterium hydrogeniphilum VP Jeanthon et al. 2002 SL6, AF332514 |
DSM 14290 | JCM 11239
Thermodesulfobacterium hveragerdense VP Sonne-Hansen and Ahring 2000 JSP | DSM
12571, X96725
Thermodesulfobacterium mobile VP (Rozanova and Khudyakova 1974) Rozanova
and Pivovarova 1991 <- Desulfovibrio thermophilus (basonym) DSM 1276,
AF334601 | VKM V-1128
Thermodesulfobacterium thermophilum VP (Rozanova and Khudyakova 1974)
Rozanova and Pivovarova 1995 <- Desulfovibrio thermophilus (basonym) DSM
1276, AF334601 | VKM V-1128
Genus II. Thermodesulfatator VP
34
Lu dwig indica tes th at t he ARB tree suppo rt s the Thermod es ulfo bac teriale s.
26
Thermodesulfatator indicus VP (T) Moussard et al. 2004 CIR29812, AF393376 | DSM

15286 | JCM 11887
Phylum BIV. Deinococcus-Thermus VP 35
Class I. Deinococci VP
Order I. Deinococcales VP (T)
Family I. Deinococcaceae VP
Genus I. Deinococcus VP (T)
Deinococcus radiodurans VP (T) Brooks and Murray 1981 ATCC 13939 | CCM 1700 |
DSM 20539, Y11332, D.radiodu2 | IMET 10603 | NCIB 9279 | UWO 288
Deinococcus erythromyxa VP Brooks and Murray 1981 -> Kocuria erythromyxa ATCC
187, Y11330, Kc.rosea2 | DSM 11630 | UWO 1045
Deinococcus geothermalis VP Ferreira et al. 1997 AG-3a, Y13038, D.geotherm | DSM
11300
Deinococcus grandis VP (Oyaizu et al. 1987) Rainey et al. 1997 <- Deinobacter grandis
(basonym) KS 0485 | ATCC 43672 | DSM 3963, Y11329, D.grandis1 | IAM 13005
Deinococcus indicus VP Suresh et al. 2004 Wt/1a, AJ549111 | DSM 15307 | MTCC 4913
Deinococcus murrayi VP Ferreira et al. 1997 ALT-1b, Y13041, D.murrayi1 | DSM
11303
Deinococcus proteolyticus VP Brooks and Murray 1981 ATCC 35074 | CCM 2703 | DSM
20540, Y11331, D.prtlytic | UWO 1056
Deinococcus radiophilus VP Brooks and Murray 1981 ATCC 27603 | CCM 2564 | DSM
20551, Y11333, D.radiophl | NCIB 10648 | NCTC 10785 | UWO 1055
Deinococcus radiopugnans VP Brooks and Murray 1981 ATCC 19172, Y11334, D.ra-
diopug | DSM 12027 | UWO 293
Order II. Thermales VP
Family I. Thermaceae VP
Genus I. Thermus AL (T)
Thermus aquaticus AL (T) Brock and Freeze 1969 ATCC 25104 | DSM 625 | IMET 11241
| YT-1, L09663, T.aquaticu
Thermus antranikianii VP Chung et al. 2000 HN3-7, Y18411 | DSM 12462

Thermus brockianus VP Williams et al. 1995 YS38, Z15062, T.spYS38 | NCIB 12676
Thermus chliarophilus VP Tenreiro et al. 1995 -> Meiothermus chliarophilus ALT-8,
X84212, Mei.chliar | DSM 9957
Thermus ?liformis VP Hudson et al. 1987 Wai33 A1, X58345, T.?liform | ATCC 43280,
X58345, T.?liform | DSM 4687, L09667, T.? lifor2
Thermus igniterrae VP Chung et al. 2000 RF-4, Y18406 | DSM 12459
Thermus oshimai VP Williams et al. 1996 SPS17, Y18416 | ATCC 700435 | DSM 12092
| NCIMB 13400
Thermus ruber VP Loginova et al. 1984 -> Meiothermus ruber Loginova 21 | ATCC
35948, Z15059, Mei.ruber4 | AUCM 1258 | DSM 1279 | VKM 1258
Thermus scotoductus VP Kristjansson et al. 1994 SE-1, AF032127, T.scotoduc | DSM
8553
Thermus silvanus VP Tenreiro et al. 1995 -> Meiothermus silvanus VI-R2, X84211,
Mei.silva2 | DSM 9946
Thermus thermophilus VP (ex Oshima and Imahori 1974) Manaia et al. 1995 HB8,
X58342, T.thmophl2 | ATCC 27634, M26923, T.thmophls | ATCC 27634, X07998,
T.thmophl3 | ATCC 27634, X58342, T.thmophl2 | ATCC 27634 | DSM 579 | NCIB
11244
Genus II. Marinithermus VP
Marinithermus hydrothermalis VP (T) Sako et al. 2003 T1, AB079382 | DSM 14884 |
JCM 11576
Genus III. Meiothermus VP
35
Lu dwig in dicate s t hat th e A RB t re e suppo rts th e grou pin g of Dein oc occ us -Thermus into two s epa ra te bu t c los ely re late d line ages .
27
Meiothermus ruber VP (T) (Loginova et al. 1984) Nobre et al. 1996 <- Thermus ruber
(basonym) Loginova 21 | ATCC 35948, Z15059, Mei.ruber4 | DSM 1279 | VKM
1258
Meiothermus cerbereus VP Chung et al. 1997 GY-1, Y13594, Mei.cerber | DSM 11376
Meiothermus chliarophilus VP (Tenreiro et al. 1995) Nobre et al. 1996 <- Thermus
chliarophilus (basonym) ALT-8, X84212, Mei.chliar | DSM 9957
Meiothermus silvanus VP (Tenreiro et al. 1995) Nobre et al. 1996 <- Thermus silvanus
(basonym) VI-R2, X84211, Mei.silva2 | DSM 9946
Meiothermus taiwanensis VP Chen et al. 2002 WR 30, AF418001 | ATCC BAA-399 |
CCRC 17170 | DSM 14542
Genus IV. Oceanithermus VP
Oceanithermus profundus VP (T) Miroshnichenko et al. 2003 506 | DSM 14977,
AJ430586 | VKM B-2274
Genus V. Vulcanithermus VP
Vulcanithermus mediatlanticus VP (T) Miroshnichenko et al. 2003 TR, AJ507298 | DSM
14978
Phylum BV. Chrysiogenetes VP 36
Class I. Chrysiogenetes VP
Order I. Chrysiogenales VP (T)
Family I. Chrysiogenaceae VP
Genus I. Chrysiogenes VP (T)
Chrysiogenes arsenatis VP (T) Macy et al. 1996 BAL-1, X81319 | DSM 11915
Phylum BVI. " Chloro?exi " 37
Class I. "Chloro?exi"
Order I. "Chloro?exales"
Family I. "Chloro?exaceae"
Genus I. Chloro?exus AL
Chloro?exus aurantiacus AL (T) Pierson and Castenholz 1974 J-10-?, D38365, Cfx.au-
ran2 | J-10-?, M34116, Cfx.aurant | ATCC 29366 | DSM 635
Chloro?exus aggregans VP Hanada et al. 1995 MD-66, D32255, Cfx.aggreg | DSM 9485
Genus II. Chloronema AL
Chloronema giganteum AL (T) Dubinina and Gorlenko 1975
Genus III. Heliothrix VP
Heliothrix oregonensis VP (T) Pierson et al. 1986 IS/F-1
Genus IV. Rosei?exus VP
Rosei?exus castenholzii VP Hanada et al. 2002 HLO8, AB041226 | DSM 13941 | JCM
11240
Family II. Oscillochloridaceae VP 38
Genus I. Oscillochloris VP (T)
Oscillochloris chrysea VP (T) Gorlenko and Pivovarova 1989
Oscillochloris trichoides VP Gorlenko and Korotkov 1989
Order II. Herpetosiphonales"
"
Family I. "Herpetosiphonaceae"
Genus I. Herpetosiphon AL
Herpetosiphon aurantiacus AL (T) Holt and Lewin 1968 ATCC 23779, M34117, Her.au-
rant | DSM 785
Herpetosiphon cohaerens AL Lewin 1970 -> Lewinella cohaerens ATCC 23123,
AF039292, Lew.cohaer
36
L udwig makes n o ment ion of Ch rysiog enes. In the RDP, th is t axo n is g ro uped with Fle xistipes . Ma cy indic ates d iffe re ntly. P CA plots o f
G arrity a nd L ilburn sh ow t hat Chrysiogen es ma ps close to t he Deferrib act eres.
37
L udwig sup ports the placeme nt o f Chloro?exaceae and Herpe tos iph onales . He argue s for th e inc lus io n o f Therm omicrob ium in th e p hylum ,
which is also sup ported b y th e RDP a nd Hug enh oltz> Howev er, P CA plo ts s how a clear s eparation, with Th ermom ic robium remo ve d. A s th is
orga nism ha sn t be en st udied for a consid erable perio d of time, it might be h ard to disc ern wha t is going on. Read ers s hould refer to B oone s
treat ment in volu me 1.
38
P earso n be lieves that creat ion of th is fam ily may be prema ture. Diffe re ntia tio n is b ase d s olely on 16S rDNA se quen ce data .
28
Herpetosiphon geysericola AL (Copeland 1936) Lewin 1970 ATCC 23076, AF039293,

Her.geyser | DSM 7119
Herpetosiphon nigricans AL Lewin 1970 -> Lewinella nigricans ATCC 23147,
AF039294, Lew.nigric
Herpetosiphon persicus AL Lewin 1970 -> Lewinella persica ATCC 23167,
AF039295, Lew.persic
Class II. "Anaerolineae" 39
Order I. "Anaerolinaeles"(T)
Family I. "Anaerolinaeceea"
Genus I. Anaerolinea VP
Anaerolinea thermophila VP (T) Sekiguchi et al. 2003 UNI-1, AB046413 | DSM 14523
| JCM 11388
Genus II. Caldilinea VP

Caldilinea aerophila VP (T) Sekiguchi et al. 2003 DSM 14535 | JCM 11387 | STL-6-O1 |
AB067647
Phylum BVII. Thermomicrobia VP
Class I. Thermomicrobia VP
Order I. Thermomicrobiales VP (T)
Family I. Thermomicrobiaceae VP
Genus I. Thermomicrobium AL (T)
Thermomicrobium roseum AL (T) Jackson et al. 1973 ATCC 27502, M34115, Tmc.ro-
seum | DSM 5159
Thermomicrobium fosteri AL Phillips and Perry 1976 ATCC 29033
Phylum BVIII. " Nitrospira " 40
Class I. "Nitrospira "
Order I. "Nitrospirales"
Family I. "Nitrospiraceae"
Genus I. Nitrospira VP
Nitrospira marina VP (T) Watson et al. 1986 ATCC 43039
Nitrospira moscoviensis VP Ehrich et al. 2001 41 NSP M-1, X82558 | DSM 10035
Genus II. Leptospirillum VP
Leptospirillum ferrooxidans VP (T) (ex Markosyan 1972) Hippe 2000 L15, X86776,
Lpp.ferro3 | ATCC 29047 | DSM 2705, X86776, Lpp.ferro3
Leptospirillum ferriphilum VP Coram and Rawlings 2002 P3a | ATCC 49881, AF356829
| DSM 14647
Leptospirillum thermoferrooxidans VP Hippe 2000 INMI L-88

Genus III. Magnetobacterium VP
Candidatus "Magnetobacterium bavaricum" X71838Mgb.bavarc
Genus IV. Thermodesulfovibrio VP
Thermodesulfovibrio yellowstonii VP (T) Henry et al. 1994 YP87, L14619, Tdv.yellow |
ATCC 51303 | DSM 11347
Thermodesulfovibrio islandicus VP Sonne-Hansen and Ahring 2000 R1Ha3 | DSM
12570, X96726
Phylum BIX. Deferribacteres VP 42
Class I. Deferribacteres VP
Order I. Deferribacterales VP (T)
Family I. Deferribacteraceae VP
39
S ekigu ch i et al. state th at Ana erolinea a nd Caldin ea are mem bers of Su bphy lu m I in th e Chlo ro ?e xi b ut fail to mak e a formal p ro pos al
rega rd ing nom encla ture. The gen us An aeroline a has p age p re ce denc e a nd w ould the re fore ha ve priority as a ty pe of a se con d c las s within
the phylum .
40
The se specie s app ear as mu ltiple b ra nches in the RDP, s ugge sting the po ss ib ility of at lea st three or more fam ilies . This patte rn is also
seen in P CA plots, where the f our gen era are well separat ed alon g the se con d dime nsion, su gges ting th e po ss ib ility of d eep branc hes .
41
42
Lud wig recom men ds t hat Flexistipe s b e a separate phylu m. In PCA plo ts, t he ge nera are s pac ed out along the s ec ond d im ens ion and a re
as far a part as A cido bacteriu m and Fib ro bacter. Lud wig a nd Klenk s cha pter re fers to o nly two cu ltiva ted s train s of Fle xistipes , bu t rec en t
comm unica tion s with oth er aut hors ind icate that Defe rribacter an d G eo vibrio sh ould als o be in the phy lum.
29
Genus I. Deferribacter VP (T)

Deferribacter thermophilus VP (T) Greene et al. 1997 BMA, U75602, Dfr.thphil | ACM
5093
Deferribacter desulfuricans VP Takai et al. 2003 SSM1, AB086060 | DSM 14783 | JCM
11476
Genus II. Denitrovibrio VP
Denitrovibrio acetiphilus VP (T) Myhr and Torsvik 2000 N2460, AF146526 | DSM 12809
Genus III. Flexistipes VP
Flexistipes sinusarabici VP (T) Fiala et al. 2000 MAS10 | DSM 4947, M59231, Fls.sinusa
Genus IV. Geovibrio VP
Geovibrio ferrireducens VP (T) Caccavo et al. 2000 PAL-1, X95744, Gv.ferredu | ATCC
51996
Geovibrio thiophilus VP Janssen et al. 2002 AAFu3, AJ299402 | DSM 11263 | ATCC
BAA-311
Genus I. Synergistes VP 43
Synergistes jonesii VP (T) Allison et al. 1993 781 | ATCC 49833, L08066
Genus II. Caldithrix VP
Caldithrix abyssi VP (T) Miroshnichenko et al. 2003 LF13, AJ430587 | DSM 13497 |
VKM B-2286
44
Phylum BX. Cyanobacteria

Class I. Cyanobacteria VP 45
Subsection I. Subsection 1 VP
Family I. Family 1.1 VP
Form genus I. Chamaesiphon VP
Chamaesiphon minutus ATCC 27169 | PCC 6605
Chamaesiphon subglobosus ATCC 29397 | PCC 7430
Form genus II. Chroococcus VP
Chroococcus sp
Form genus III. Cyanobacterium VP
Cyanobacterium sp
Form genus IV. Cyanobium VP
Cyanobium gracile
Form genus V. Cyanothece VP
Cyanothece ATCC 29141 | ATCC 29155 | ATCC 29534 | PCC 7418, AJ000708,
Cya.SAJ708 | PCC 7424, AJ000715, Cya.SAJ715 | PCC 7425
Cyanothece sp
Form genus VI. Dactylococcopsis VP
Dactylococcopsis (Myxobaktron) salina PCC 8305, AJ000711, Dlc.sp8305
Form genus VII. Gloeobacter VP
Gloeobacter violaceus ATCC 29082 | PCC 7421
Form genus VIII. Gloeocapsa VP
Gloeocapsa ATCC 27928 | ATCC 29159 | PCC 73106, AB039000 | PCC 7428
43
Lud wig m ake s no m ention of wh ere to place Synergist es. Th e av ailable s eque nce f ro m G enB ank d oes not me et our c riteria f or inc lus ion in
the PCA mod els. In the RD P, Synergist es g ro ups nea r th e Verruc omicrob ia a nd Nitros pin a. Nitrosp ina is kn own to be m is pla ce d in the RDP.
44
P la ce ment is p ro visiona l. M iroshnichenko et al. n ot that Ca ldithrix join s the B ac teria a t ro ot of the D eferriba cte r a nd Nit ro sp ina lin es o f
de scent, b ut that statistica l su ppo rt is insigni?cant .
45
Lu dwig recognizes the Cya noba cte ria a s a separat e line of des ce nt, a lon g with t he c hloroplas ts. P CA p lot s s ho w a hig h leve l o f v aria tion
in the chlo ro pla sts.
In W ilmot te and Herdm ans chapte r on t he phylo geny of Cyanob act eria (Volu me 1 of the s ec ond e dit ion ), th ey s tate th at there is co ns ide ra ble
variat ion in the branchin g orde r of th e Cyano bacteria , espec ially at th e ba se of th e tree . P re sum ably, this aris es from an e xp los iv e ra dia tion
shortly a fter th e evolution o f oxyg enic photo synth esis. Ho wev er, t ermin al node s tend to c lu ste r in a pred ic table m ann er.
W ilmott e a nd Herdma n a lso note th at t here is a m ultiplicity of con foun din g p ro ble ms in lin king av ailab le phe noty pic and ge noty pic in format ion .
P art o f the dif?culty stem s from misidenti?ed reference m ateria l, inc lud ing t hat which is h eld in c ollec tions . There also s ee ms t o be a prob lem
with the q uality of se quen ce d ata (especially sh ort se quen ces ). They urge an y ex perimen ter t o con ?rm th e ide ntity of e ach s train us ing a
po lyphasic a pproa ch. O nly then might it be p ossible to link the tax onom y and phy lo geny in a me aningful wa y.
30
Form genus IX. Gloeothece VP

Gloeothece ATCC 27151 | PCC 6501, X78680, Glth.memb2
Form genus X. Microcystis VP
Microcystis aeruginosa VP (T) Otsuka et al. 2001 46 NIES843 | IAM M-247, AB035549
Form genus XI. Prochlorococcus VP
Prochlorococcus marinus subsp. marinus VP (T) (Chisholm et al. 1992) Chisholm et al.
2001 47 CCMP-1375
Prochlorococcus marinus subsp. pastoris VP Rippka et al. 2001 PCC 9511 | ATCC
700925, AF180967
Form genus XII. Prochloron VP
Prochloron didemni VP (T) Florenzano et al. 1986
Form genus XIII. Synechococcus VP
Synechococcus ATCC 27265 | PCC 7003, AB015059, Syn.7003
Synechococcus cedrorum ATCC 29140 | PCC 7202
Synechococcus lividus ATCC 27149 | PCC 6715
Form genus XIV. Synechocystis VP
Synechocystis ATCC 27150 | ATCC 27189 | ATCC 27266 | PCC 6308, AY224195 | PCC
6714 | PCC 6906
Subsection II. Subsection 2 VP
Form genus I. Cyanocystis VP
Cyanocystis sp
Form genus II. Dermocarpella VP
Dermocarpella incrassata SAG 29.84, AJ344559 | ATCC 29376 | PCC 7326
Form genus III. Stanieria VP
Stanieria ATCC 29367 | PCC 7301, AB039009
Form genus IV. Xenococcus VP
Xenococcus schousboei ATCC 29373 | PCC 7305
Family II. Family 2.2 VP
Form genus I. Chroococcidiopsis VP
Chroococcidiopsis ATCC 27176 | PCC 6712, AJ344557
Chroococcidiopsis thermalis ATCC 27900 | CCAP 1451/1 | PCC 7203, AB039005
Form genus II. Myxosarcina VP
Myxosarcina concinna ATCC 29377 | PCC 7312
Myxosarcina sp
Form genus III. Pleurocapsa VP
Pleurocapsa ATCC 29388 | ATCC 29393 | ATCC 29396 | PCC 7319 | PCC 7327 | PCC
7516, X78681, Plrc.7516
Subsection III. Subsection 3 VP
Form genus I. Arthrospira VP
Arthrospira jenneri
Arthrospira maxima
Arthrospira platensis ATCC 29408 | PCC 7345, X70769, Ar.sp8005
Form genus II. Borzia VP
Borzia sp
Form genus III. Crinalium VP
Crinalium epipsammum VP (T) De Winder et al. 1990 SAG 22.89 | ATCC 49662
Form genus IV. Geitlerinema VP
Geitlerinema ATCC 29120 | ATCC 29126 | PCC 7105, AB039010 | PCC 7407
46
30 (3 a-b,4) as em ende d by th e Judicial Comm ission in 1 999 (IJ S EM 50: 2 239 2244 ). Wh ile the form g enus M ic ro cy s tis has s tand in g in
bo tanica l nom encla ture, th ere is some d oubt a s to the legitim acy of th e gen us n ame in proc ary otic no menc lature as the n ame h as nev er
be en va lidly pub lish ed.
47
31
Genus V. Halospirulina VP
Halospirulina tapeticola VP (T) Nbel et al. 2000 CCC Baja-95 Cl. 2, Y18791
Form genus VI. Leptolyngbya VP
Leptolyngbya ATCC 29117 | ATCC 29409 | PCC 7104, AB039012 | PCC 7375
Form genus VII. Limnothrix VP
Limnothrix sp
Form genus VIII. Lyngbya VP
Lyngbya confervoides ATCC 29346 | PCC 7419, AJ000714, Lyn.cnfrvo
Form genus IX. Microcoleus VP
Microcoleus chthonoplastes ATCC 29206 | PCC 7113
Microcoleus lacustris ATCC 29128 | PCC 7420, X70770, Mccl.7420
Form genus X. Oscillatoria VP
Oscillatoria acuminata ATCC 27930 | PCC 6304, AB039014
Oscillatoria agardhii NIVA-CYA 68 | PCC 7805
Oscillatoria nigro-viridis ATCC 29134 | PCC 7112, AB074509
Oscillatoria princeps
Oscillatoria prolifera
Oscillatoria sancta ATCC 29209 | PCC 7515, AB039015, AF132933
Oscillatoria tenuis
Form genus XI. Planktothrix VP
Planktothrix sp
Form genus XII. Prochlorothrix VP
Prochlorothrix hollandica VP (T) Burger-Wiersma et al. 1989 CCAP 1490/1
Form genus XIII. Pseudanabaena VP
Pseudanabaena tenuis
Form genus XIV. Spirulina VP
Spirulina major ATCC 29542 | PCC 6313, X75045, Ar.sp7345
Form genus XV. Starria VP
Starria zimbabwensis
Form genus XVI. Symploca VP
Symploca PCC 8002, AB039021
Genus XVII. Trichodesmium VP
Trichodesmium
Form genus XVIII. Tychonema VP
Tychonema sp
Subsection IV. Subsection 4 VP
Form genus I. Anabaena VP
Anabaena PCC 7108, AF317629
Anabaena ATCC 29208
Anabaena cylindrica ATCC 27899 | CCAP 1403/2a | PCC 7122, AF091150, Anbn.cyli2
| UTEX 629
Anabaena sphaerica UTEX 1616

Form genus II. Anabaenopsis VP
Anabaenopsis PCC 7905
Form genus III. Aphanizomenon VP
Aphanizomenon ?os-aquae CCAP 1401/1 | PCC 7905, AY038035
Form genus IV. Cyanospira VP
Cyanospira sp
Form genus V. Cylindrospermopsis VP
Cylindrospermopsis raciborskii Seenayya and Subba-Raju 1972
Form genus VI. Cylindrospermum VP
Cylindrospermum majus ATCC 33001 | CCAP 1415/2 | PCC 7604
Cylindrospermum stagnale ATCC 29204, AF132789 | PCC 7417, AJ133163
Form genus VII. Nodularia VP
32
Nodularia harveyana M93/1 | PCC 7804

Nodularia spumigena ATCC 29167 | PCC 73104, AB039002, AF268023 | UTEX 2901
Form genus VIII. Nostoc VP
Nostoc ATCC 29150 | PCC 7107
Nostoc commune
Nostoc muscorum ATCC 29105 | PCC 6719
Nostoc punctiforme ATCC 29133 | PCC 73102, AF027655, Nost.punct
Form genus IX. Scytonema VP
Scytonema hofmanni
Family II. Family 4.2 VP
Form genus I. Calothrix VP
Calothrix ATCC 27901 | ATCC 29111 | ATCC 29112 | PCC 7102 | PCC 7116 | PCC 7507
Form genus II. Rivularia VP
Rivularia sp
Form genus III. Tolypothrix VP
Tolypothrix ATCC 29157 | PCC 7415aloth
Tolypothrix tenuis ATCC 27914 | IAM M-29 | NIBB 1027 | PCC 7101
Subsection V. Subsection 5 VP
Family I. Subsection 5.1 VP
Form genus I. Chlorogloeopsis VP
Chlorogloeopsis fritschii ATCC 27193 | CCAP 1411/1 | PCC 6912, AB093489
Form genus II. Fischerella VP
Fischerella thermalis
Form genus III. Geitleria VP
Geitleria NCTC 10915
Form genus IV. Iyengariella VP
Iyengariella sp
Form genus V. Nostochopsis VP
Nostochopsis sp
Form genus VI. Stigonema VP
Stigonema minutum
Phylum BXI. Chlorobi VP 48
Class I. "Chlorobia"
Order I. Chlorobiales AL
Family I. Chlorobiaceae AL
Genus I. Chlorobium AL (T)
Chlorobium limicola AL (T) Nadson 1906 DSM 245, Y10640, Chl.limic3
Chlorobium clathratiforme VP (Szafer 1911) Imhoff 2003 <- Pelodictyon clathratiforme
(basonym) BU1 | DSM 5477 , Y08108 49
Chlorobium chlorovibrioides AL Gorlenko et al. 1974 -> Chlorobaculum chlorovibri-
oides DSM 1377
Chlorobium luteolum VP (Schmidle 1901) Imhoff 2003 <- Pelodictyon luteolum (ba-
sonym) 50 DSM 273, Y08107
Chlorobium phaeobacteroides AL Pfennig 1968 2430, Y08104, Chl.phbact | DSM 266
Chlorobium phaeovibrioides AL Pfennig 1968 2631, Y08105, Chl.phvibr | DSM 269
Chlorobium tepidum VP Wahlund et al. 1996 -> Chlorobaculum tepidum TLS | ATCC
49652
Chlorobium vibrioforme AL Pelsh 1936 -> Prosthecochloris vibrioformis 6030,
M62791 | DSM 260, M62791, Chl.vibrio
Genus II. Ancalochloris AL
48
Lu dwig state s t hat there is consid erable evidence that the Chlo ro bia les a nd Bac teroides h ave a co mmo n root. H e do es nt mak e men tion
of A nca lochloris or Ch loroh erpton in his text.
49
30 (3 a-b,4) a s eme nded by th e Jud icial Co mmission in 199 9 (IJ SE M 50: 223 922 44)..
50
33
Ancalochloris per?lievii AL (T) Gorlenko and Lebedeva 1971

Genus III. Chlorobaculum VP
Chlorobaculum tepidum VP (T) (Wahlund et al. 1996) Imhoff 2003 <- Chlorobium
tepidum (basonym) TLS | ATCC 49652, M58468 | CIP 105973 | DSM 12025
Chlorobaculum chlorovibrioides (Gorlenko et al. 1974) Imhoff 2003 <- Chlorobium
chlorovibrioides (basonym) UdG 6026 , Y10649 51
Chlorobaculum limnaeum VP Imhoff 2003 DSM 1677 , AJ290831 52
Chlorobaculum parvum VP Imhoff 2003 DSM 263, Y10647 53
Chlorobaculum thiosulfatiphilum VP Imhoff 2003 DSM 249 , Y08102 54
Genus IV. Chloroherpeton VP
Chloroherpeton thalassium VP (T) Gibson et al. 1985 GB-78 | ATCC 35110
Genus V. Pelodictyon AL
Pelodictyon clathratiforme AL (T) (Szafer 1911) Lauterborn 1913 -> Chlorobium
clathratiforme, Y08106, Pld.clathr 55
Pelodictyon luteolum AL (Schmidle 1901) Pfennig and Trper 1971 -> Chlorobium lu-
teolum 2530, Y08107, Pld.luteol | DSM 273
Pelodictyon phaeoclathratiforme VP Overmann and Pfennig 1990 -> Chlorobium
phaeobacteroides BU 1, Y08108, Pld.phclth | DSM 5477
Pelodictyon phaeum AL Gorlenko 1972 RP 6 | DSM 728 56
Genus VI. Prosthecochloris AL
Prosthecochloris aestuarii AL (T) (Gorlenko 1970) emend. Imhoff 2003 SK 413,
Y07837, Prst.aestu | DSM 271
Prosthecochloris vibrioformis VP (Pelsh 1936) Imhoff 2003 57 <- Chlorobium vibrio-
forme (basonym) DSM 260, M62791 58
NP 59
Phylum BXII. Proteobacteria
Class I. AlphaproteobacteriaNP
Order I. Rhodospirillales AL (T) 60
Family I. Rhodospirillaceae AL
Genus I. Rhodospirillum AL (T) 61
Rhodospirillum rubrum AL (T) (Esmarch 1887) Molisch 1907 ATH 1.1.1, M32020,
R.rubrum | ATCC 11170, D30778, R.rubrum3 | DSM 467 | NCIB 8255
Rhodospirillum centenum VP Favinger et al. 1994 = Rhodocista centenaria (homotypic
synonym) ATCC 43720, D12701, Rhc.centen | DSM 9894 | IAM 14193, D12701,
Rhc.centen
Rhodospirillum fulvum AL van Niel 1944 -> Phaeospirillum fulvum KK | ATCC 15798
| DSM 113 | NCIMB 11762, D14433, Phs.fulvu2 | NCIMB 11884
Rhodospirillum molischianum AL Giesberger 1947 -> Phaeospirillum molischianum

ATCC 14031, M59067, Phs.molsch | DSM 120
51
I nva lid and illegitim ate na me. Note tha t a su bcu ltu re o f t he ty pe s tra in is on ly d epos ited in one pu blic c ollec tion or may othe rwis e be in
violation of R ule s 27(3) a nd/or 30(3a-b,4 ) as em ende d b y the Ju dic ia l Comm is sion in 199 9 (IJ SE M 50: 223 92 244).. M oreov er, the auth or
did not forma lly propo se UdG 602 6 a s the ne otype strain.
52
53
54
55
Rule 3 7a(1) s tate s that the n ame of a taxon must b e chan ged if the n ome nclatu ra l t ype of the t axo n is ex cluded .
56
In the propo sa l o f Im hoff (In t. J. S yst. Evol. Microb iol., 2 003 , 53 , 94 1-951),to rec las s ify P elodicty on clath ra tifo rm e, P elodicty on lu teolum ,
P elo dictyon phae oclath ra tifo rm e, he fails to take acco unt Pelodic tyo n p haeu m.
57
58
59
In co mmu nications with L udwig, he raises the point tha t t he Prote obac teria a re n ot mon ophy le tic . S ome differenc es ex is t b etwee n the RDP
an d ARB tre es. Most not ably, t he delta an d epsilon prot eoba cte ria are s eparate d from th e alp ha, be ta and g amm a proteo bac teria in the ARB
tree. In PCA p lot s, G arrity an d Lilburn observe th e sam e sep aration.
60
L udwig ind icates th at t he branchin g o f th e Rh odospirillaceae and A cte obac teriac ea is not as d eep as s ome of the othe r alpha proteo bac teria
(eg. Caulobacte ria).
61
M emb er of th e a lp ha-1 su bgroup sensu Imh off.
34
Rhodospirillum photometricum AL Molisch 1907 ATCC 49918 | DSM 122, AJ222662

Rhodospirillum salexigens VP Drews 1982 -> Rhodothalassium salexigens WS 68 |
ATCC 35888, D14431, Rt.salexi2 | DSM 2132, M59070, Rt.salexig
Rhodospirillum salinarum VP Nissen and Dundas 1985 -> Rhodovibrio salinarum
ATCC 35394, M59069, Rdv.salna2 | DSM 9154
Rhodospirillum sodomense VP Mack et al. 1996 -> Rhodovibrio sodomensis DSI,
M59072, Rdv.sodmen | ATCC 51195 | DSM 9895
Rhodospirillum tenue AL Pfennig 1969 -> Rhodocyclus tenuis ATCC 25093 | DSM 109,
D16208, Rcy.tenuis | SMG 109
Genus II. Azospirillum AL 62
Azospirillum lipoferum AL (T) (Beijerinck 1925) Tarrand et al. 1979 Sp 59b | ATCC
29707, M59061, Azs.lipofe | DSM 1691
Azospirillum amazonense VP Magalhaes et al. 1984 Am 14 (Y1) | ATCC 35119 | DSM
2787, Z29616, Azs.amazon
Azospirillum brasilense AL Tarrand et al. 1979 Sp7, X79739, Azs.brasi5 | ATCC 29145
| DSM 1690 | IMET 11303
Azospirillum doebereinerae VP Eckert et al. 2001 63 GSF71, AJ238567 | DSM 13131

Azospirillum halopraeferens VP Reinhold et al. 1987 Au 4, X79731, Azs.halpr2 | DSM
3675, Z29618, Azs.halprf | LMG 7108
Azospirillum irakense VP Khammas et al. 1991 KBC1, Z29583, Azs.iraken | CIP
103311, X79737, Azs.irake2 | DSM 11586
Azospirillum largimobile VP (Skerman et al. 1983) Ben Dekhil et al. 1997 <- Con-
glomeromonas largomobilis subsp. largmobilis (basonym) ACM 2041, X90759,
Azs.largom | DSM 9441 | UQM 2041
Genus III. Inquilinus VP
Inquilinus limosus VP (T) Coenye et al. 2002 AU 476, AY043374 | CCUG 45653 | LMG
20952
Genus IV. Magnetospirillum VP 64
Magnetospirillum gryphiswaldense VP (T) Schleifer et al. 1992 MSR-1, Y10109 | DSM
6361
Magnetospirillum magnetotacticum VP (Maratea and Blakemore 1981) Schleifer et al.
1992 <- Aquaspirillum magnetotacticum (basonym) MS-1, Y10110 | ATCC 31632
| DSM 3856 | NBRC 15272
Genus V. Phaeospirillum VP 65
Phaeospirillum fulvum VP (T) (van Niel 1944) Imhoff et al. 1998 <- Rhodospirillum ful-
vum (basonym) KK | NCIB 11762, D14433 | ATCC 15798 | DSM 113, Phs.fulvu2
| NCIMB 11884
Phaeospirillum molischianum VP (Giesberger 1947) Imhoff et al. 1998 <- Rhodospiril-

lum molischianum (basonym) ATCC 14031, M59067, Phs.molsch | DSM 120
Genus VI. Rhodocista VP 66
Rhodocista centenaria VP (T) (Favinger et al. 1994) Kawasaki et al. 1994 = Rhodospir-
illum centenum (homotypic synonym) ATCC 43720, D12701, Rhc.centen | DSM
9894 | IAM 14193, D12701, Rhc.centen
Rhodocista pekingensis VP Zhang et al. 2003 3-p, AF523824 | AS 1.2194 | JCM 11669
Genus VII. Rhodospira VP 67
Rhodospira trueperi VP (T) Pfennig et al. 1998 8316 | ATCC 700224
Genus VIII. Rhodovibrio VP 68
62
63
64
65
66
67
68
Im hoff in dicate s that Rho dovibrio sho uld be assign ed t o a s eparat e fa mily.
35
Rhodovibrio salinarum VP (T) (Nissen and Dundas 1985) Imhoff et al. 1998 <- Rho-
dospirillum salinarum (basonym) ATCC 35394, M59069, Rdv.salna2 | DSM 9154
Rhodovibrio sodomensis VP (Mack et al. 1996) Imhoff et al. 1998 <- Rhodospirillum
sodomense (basonym) DSI, M59072, Rdv.sodmen | ATCC 51195 | DSM 9895
Genus IX. Roseospira VP 69
Roseospira mediosalina VP (T) Imhoff et al. 1998 L1-66 , AJ000989 | BN 280
Roseospira marina VP Guyoneaud et al. 2003 ATCC BAA-447 | CE2105, AJ298879 |
DSM 15113
Roseospira navarrensis VP Guyoneaud et al. 2003 ATCC BAA-448 | DSM 15114 |
SE3104, AJ298880
Genus X. Skermanella VP
Skermanella parooensis VP (T) (Skerman et al. 1983) Sly and Stackebrandt 1999 <- Con-
glomeromonas largomobilis subsp. parooensis (basonym) ACM 2042, X90760,
Skm.paroon | DSM 9527 | UQM 2042
Genus XI. Thalassospira VP
Thalassospira lucentensis VP (T) Lopez-Lopez 2002 QMT2, AF358664 | DSM 14000 |
CECT 5390
Genus XII. Tistrella VP
Tistrella mobilis VP (T) Shi et al. 2003 IAM 14872 | TISTR 1108, AB071665
Family II. Acetobacteraceae VP
Genus I. Acetobacter AL (T)
Acetobacter aceti AL (T) (Pasteur 1864) Beijerinck 1898 = Acetobacter aceti subsp. aceti
(homotypic synonym) ATCC 15973 | DSM 3508, X74066, Aba.aceti2 | ICMP 8807
| IMET 10732 | JCM 7641, D30768, Aba.aceti | LMG 1261 | NCIB 8621, X74066,
Aba.aceti2
Acetobacter aceti subsp. aceti AL (T) (Pasteur 1864) Beijerinck 1898 = Acetobacter aceti
(homotypic synonym) ATCC 15973 | DSM 3508, X74066, Aba.aceti2 | ICMP 8807
| IMET 10732 | JCM 7641, D30768, Aba.aceti | LMG 1261 | NCIB 8621, X74066,
Aba.aceti2
Acetobacter aceti subsp. liquefaciens AL (Asai 1935) De Ley and Frateur 1974 -> Ace-
tobacter liquefaciens DSM 5603 | IAM 1834
Acetobacter aceti subsp. orleanensis AL (Henneberg 1906) De Ley and Frateur 1974
-> Acetobacter orleanensis ATCC 12876 | IMET 10752
Acetobacter aceti subsp. xylinus AL (Brown 1886) De Ley and Frateur 1974 -> Aceto-
bacter xylinus ATCC 23767 | DSM 3509 | NCIB 11664 | NCIB 4112B
Acetobacter cerevisiae VP Cleenwerck et al. 2002 LMG 1625, AJ419843 | ATCC 23765
| DSM 14362 | NCIB 8894
Acetobacter cibinongensis VP Lisdiyanti et al. 2002 70 4H-1, AB052710 | NBRC 16605

| JCM 11196
Acetobacter diazotrophicus VP Gillis et al. 1989 -> Gluconacetobacter diazotrophicus

D PA1 5 | ATCC 49037, X75618, Gab.diaztr | DSM 5601 | LMG 7603, X75618,
Gab.diaztr
Acetobacter estunensis VP (Carr 1958) Lisdiyanti et al. 2001 <- Acetobacter pasteuri-
anus subsp. estunensis (basonym) ATCC 23753 | NBRC 13751, AB032349 | LMG
1626 | NCIMB 8935
Acetobacter europaeus VP Sievers et al. 1992 -> Gluconacetobacter europaeus DES
11, Z21936, Gab.europa | DSM 6160, Z21936, Gab.europa
Acetobacter hansenii VP Gossele et al. 1983 -> Gluconacetobacter hansenii ATCC
35959 | DSM 5602 | NCIB 8746, X75620, Gab.hansen
Acetobacter indonesiensis VP Lisdiyanti et al. 2001 5H-1 | NBRC 16471 | JCM 10948 |
NRIC 0313, AB032356
69
70
36
Acetobacter intermedius VP Boesch et al. 1998 -> Gluconacetobacter intermedius

TF2, Y14694, Aba.intmed | DSM 11804
Acetobacter liquefaciens VP (Asai 1935) Gossel et al. 1983 <- Acetobacter aceti
subsp. liquifaciens (basonym) -> Gluconacetobacter liquefaciens ATCC 14835 |
DSM 5603 | IAM 1834 | NBRC 12388, X75617, Gab.liqfac
Acetobacter lovaniensis VP (Frateur 1950) Lisdiyanti et al. 2001 <- Acetobacter pas-
teurianus subsp. lovaniensis (basonym) ATCC 12875 | DSM 4491 | NBRC 13753,
AB032351 | LMG 1579 | NCIMB 8620
Acetobacter malorum VP Cleenwerck et al. 2002 LMG 1746, AJ419844 | DSM 14337
Acetobacter methanolicus VP Uhlig et al. 1986 -> Acidomonas methanolica MB58,
X77468, Adm.metha2 | ATCC 43581 | DSM 5432 | IMET 10945
Acetobacter oboediens VP Sokollek et al. 1998 -> Gluconacetobacter oboediens LTH
2460, AJ001631, Aba.oboedi | DSM 11826
Acetobacter orientalis VP Lisdiyanti et al. 2002 71 21F-2, AB052706 | NBRC 16606 |
JCM 11197
Acetobacter orleanensis VP (Henneberg 1906) Lisdiyanti et al. 2001 <- Acetobacter
aceti subsp. orleanensis (basonym) ATCC 12876 | DSM 4492 | NBRC 13752,
AB032350 | IMET 10752 | LMG 1583 | NCIMB 8622
Acetobacter pasteurianus subsp. pasteurianus AL (Hansen 1879) Beijerinck 1916
ATCC 33445 | DSM 3505 | IMET 10733 | LMD 22.1, X71863, Aba.paster 72
Acetobacter pasteurianus subsp. ascendens AL (Henneberg 1898) De Ley and Frateur
1974 LMD 51.1
Acetobacter pasteurianus subsp. estunensis AL (Carr 1958) De Ley and Frateur 1974
-> Acetobacter estunensis ATCC 23753
Acetobacter pasteurianus subsp. lovaniensis AL (Frateur 1950) De Ley and Frateur
1974 -> Acetobacter lovaniensis ATCC 12875 | IMET 10734
Acetobacter pasteurianus subsp. paradoxus AL (Frateur 1950) De Ley and Frateur 1974
LMD 53.6
Acetobacter peroxydans AL Vissert Hooft 1925 ATCC 12874 | LMG 1635 | NBRC
13755, AB032352 | NCIB 8618
Acetobacter pomorum VP Sokollek et al. 1998 LTH 2458, AJ001632, Aba.pomorm |
DSM 11825
Acetobacter syzygii VP Lisdiyanti et al. 2002 73 9H-2 | NBRC 16604 | JCM 11197
Acetobacter tropicalis VP Lisdiyanti et al. 2001 Ni-6b | NBRC 16470 | JCM 10947 | NRIC
0312, AB032354 | NRIC 0312, AB032355
Acetobacter xylinus subsp. xylinus VP (Brown 1886) Yamada 1984 74 -> Gluconaceto-
bacter xylinus ATCC 23767 | DSM 6513 | LMG 1515, X75619, Gab.xylxyl | NCIB
11664, X75619, Gab.xylxyl
Acetobacter xylinus subsp. sucrofermentans VP Toyosaki et al. 1996 BPR 2001,
AJ007698, Gab.xylsuc | ATCC 700178 | JCM 9730
Genus II. Acidiphilium VP
Acidiphilium cryptum VP (T) Harrison 1981 Lhet2 | ATCC 33463, D30773, Acdp.cryp3 |
DSM 2389
Acidiphilium acidophilum VP (Harrison 1983) Hiraishi et al. 1998 <- Thiobacillus aci-
dophilus (basonym) TM | ATCC 27807, D86511, Acdp.acphl | CIP 104483 | DSM
700
71
72
In the ?rst edition of B ergeys Ma nua l of Syst emat ic Ba cte riology , De Ley et a l. inc lu ded the ?v e s ubs pec ie s o f Ac eto bac ter pa ste urian us ,
along with A. peroxyd ans, as ju nio r su bje ctive syno nym s of A . pas teu rianu s. Howev er, this no men clatural c hang e was no t va lidate d in IJ SB
(now IJS EM).
73
74
Acet obacter xylin us has bee n recla ssi?ed as Gluconaceto bac ter x ylin us . Howe ve r, the su bsp ec ies s uc ro fermen tans an d x ylinu s w ere no t
ad dressed b y the a utho rs.
37
Acidiphilium aminilyticum VP Kishimoto et al. 1994 -> Acidocella aminolytica 101,

D30771, Acc.amnlyt | ATCC 51361 | DSM 11237 | JCM 8796
Acidiphilium angustum VP Wichlacz et al. 1986 KLB | ATCC 35903, D30772,
Acdp.angu2
Acidiphilium facile VP Wichlacz et al. 1986 -> Acidocella facilis PW2 | ATCC 35904,
D30774, Acc.facil2
Acidiphilium multivorum VP Wakao et al. 1995 AIU 301, AB006711, Acdp.mltvr | DSM
11245 | JCM 8867
Acidiphilium organovorum VP Lobos et al. 1986 ATCC 43141, D30775, Acdp.organ
Acidiphilium rubrum VP Wichlacz et al. 1986 OP | ATCC 35905, D30776, Acdp.rubr2
Genus III. Acidisphaera VP
Acidisphaera rubrifaciens VP (T) Hiraishi et al. 2000 HS-AP3, D86512 | JCM 10600,
D86512
Genus IV. Acidocella VP
Acidocella facilis VP (T) (Wichlacz et al. 1986) Kishimoto et al. 1996 <- Acidiphilium
facile (basonym) PW2 | ATCC 35904, D30774, Acc.facil2
Acidocella aminolytica VP (Kishimoto et al. 1994) Kishimoto et al. 1996 <-
Acidiphilium aminilyticum (basonym) 101, D30771, Acc.amnlyt | ATCC 51361 |
DSM 11237 | JCM 8796
Genus V. Acidomonas VP 75
Acidomonas methanolica VP (T) (Uhlig et al. 1986) Urakami et al. 1989 <- Acetobacter
methanolicus (basonym) TK 0705 | ATCC 43581 | DSM 5432 | IMET 10945,
D30770, Adm.methan | LMG 1668, X77468, Adm.metha2 | MB 58, X77468,
Adm.metha2
Genus VI. Asaia VP
Asaia bogorensis VP (T) Yamada et al. 2000 71, AB025928 | JCM 10569 | NRIC 0311
Asaia krungthepensis VP Yukphan et al. 2004 AA08, AB102953 | BCC 12978 | NBRC
100057 | NRIC 0535 | TISTR 1524
Asaia siamensis VP Katsura et al. 2001 76 S60-1, AB035416 | NBRC 16457 | JCM 10715
| NRIC 0323
Genus VII. Craurococcus VP

Craurococcus roseus VP (T) Saito et al. 1998 NS130, D85828 | JCM 9933
Genus VIII. Gluconacetobacter VP
Gluconacetobacter liquefaciens VP (T) (Asai 1935) Yamada et al. 1998 <- Acetobac-
ter liquefaciens (basonym) ATCC 14835 | CCUG 18124 | DSM 5603 | IAM 1834 |
NBRC 12388, X75617, Gab.liqfac
Gluconacetobacter azotocaptans VP Fuentes-Ramrez et al. 2001 ATCC 700988 | CFN-
Ca54, AF192761 | DSM 13594
Gluconacetobacter diazotrophicus VP (Gillis et al. 1989) Yamada et al. 1998 <- Ace-
tobacter diazotrophicus (basonym) Dbereiner PAI 5 | ATCC 49037, X75618,
Gab.diaztr | DSM 5601 | LMG 7603, X75618, Gab.diaztr
Gluconacetobacter entanii VP Schller et al. 2000 LTH 4560, AJ251110 | DSM 13536
Gluconacetobacter europaeus VP (Sievers et al. 1992) Yamada et al. 1998 <- Acetobac-
ter europaeus (basonym) DES 11, Z21936, Gab.europa | DSM 6160 | ATCC 51845
Gluconacetobacter hansenii VP (Gossele et al. 1983) Yamada et al. 1998 <- Acetobacter
hansenii (basonym) ATCC 35959 | CCUG 18123 | DSM 5602 | LMG 1527, X75620,
Gab.hansen | NCIB 8746, X75620, Gab.hansen
Gluconacetobacter intermedius VP (Boesch et al. 1998) Yamada 2000 <- Acetobacter
intermedius (basonym) TF2, Y14694, Aba.intmed | DSM 11804
Gluconacetobacter johannae VP Fuentes-Ramrez et al. 2001 ATCC 700987 | CFN-
Cf55, AF111841 | DSM 13595
75
M emb er of th e alp ha-1 su bgroup sensu Imh off
76
38
Gluconacetobacter oboediens VP (Sokollek et al. 1998) Yamada 2000 <- Acetobacter

oboediens (basonym) LTH 2460, AJ001631, Aba.oboedi | DSM 11826
Gluconacetobacter xylinus VP (Brown 1886) Yamada et al. 1998 <- Acetobacter xylinus
(basonym) ATCC 23767 | DSM 6513 | LMG 1515, X75619 | NCIB 11664
Genus IX. Gluconobacter AL
Gluconobacter oxydans subsp. oxydans AL (T) (Henneberg 1897) De Ley 1961 ATCC
19357 | DSM 3503, X73820, Gb.oxydans | ICMP 12533 | LMG 1408
Gluconobacter oxydans subsp. industrius AL (Henneberg 1898) De Ley and Frateur 1974
LMD 24.1
Gluconobacter oxydans subsp. melanogenes AL (Beijerinck 1911) De Ley and Frateur

1974 LMD 29.2
Gluconobacter oxydans subsp. sphaericus AL Ameyama 1975 NBRC 12467
Gluconobacter oxydans subsp. suboxydans AL (Kluyver and de Leeuw 1924) De Ley
and Frateur 1974 IMET 10507 | LMD 23.2
Gluconobacter asaii VP Mason and Claus 1989 ATCC 49206 | DSM 7148 | NBRC 3276,
X80165, Gb.asaii
Gluconobacter cerinus VP Yamada and Akita 1984 ATCC 19441 | DSM 9533 | NBRC
3267, X80775, Gb.cerinus | LMG 1368, X80775, Gb.cerinus
Gluconobacter frateurii VP Mason and Claus 1989 Kondo 40 | ATCC 49207 | DSM 7146
| NBRC 3264, X82290, Gb.frateur | LMG 1365, X82290, Gb.frateur
Genus X. Kozakia VP
Kozakia baliensis VP Lisdiyanti et al. 2002 Yo-3, AB056321 | DSM 14400 | NBRC
16664 | JCM 11301 | NRIC 0488
Genus XI. Muricoccus VP
Muricoccus roseus VP (T) Kmpfer et al. 2003 173/96, AJ488505 | CIP 107419 | DSM
14916
Genus XII. Paracraurococcus VP
Paracraurococcus ruber VP (T) Saito et al. 1998 NS89, D85827 | JCM 9931
Genus XIII. Rhodopila VP
Rhodopila globiformis VP (T) (Pfennig 1974) Imhoff et al. 1984 <- Rhodopseudomonas
globiformis (basonym) ATCC 35887 | DSM 161, D86513, Rpl.globi2
Genus XIV. Roseococcus VP
Roseococcus thiosulfatophilus VP (T) Yurkov et al. 1994 RB3, X72908, Rsc.thsulf | DSM
8511
Genus XV. Rubritepida VP
Rubritepida ?occulans VP (T) Alarico et al. 2002 H-8 | ATCC BAA-385 | DSM 14296,
AF465832
Genus XVI. Stella VP
Stella humosa VP (T) Vasilyeva 1985 ATCC 43930 | AUCM B-1137 | DSM 5900,
AJ535710 | VKM B-1137
Stella vacuolata VP Vasilyeva 1985 ATCC 43931 | DSM 5901, AJ535711 | INMI 229 |
VKM B-1552
Genus XVII. Teichococcus VP
Teichococcus ludipueritiae VP (T) Kmpfer et al. 2003 170/96, AJ488504 | CIP 107418 |
DSM 14915
Genus XVIII. Zavarzinia VP
Zavarzinia compransoris VP (T) Meyer et al. 1994 Z-1155 | DSM 1231
Order II. Rickettsiales AL 77
Family I. Rickettsiaceae AL
Genus I. Rickettsia AL (T)
Rickettsia prowazekii AL (T) da Rocha-Lima 1916 ATCC VR 142
Rickettsia aeschlimannii VP Beati et al. 1997 MC16, U74757, Ric.aeschl
Rickettsia africae VP Kelly et al. 1996 Z9-Hu
77
Lu dwig indica tes tha t the Ricketsia les a nd Ehrlichiace ae are c lo se toge ther in the ARB tree .
39
Rickettsia akari AL Huebner et al. 1946 MK (Kaplan), L36099, Ric.akari2 | ATCC VR

148
Rickettsia australis AL Philip 1950 NIAID Phillips 32, L36101, Ric.austr3 | NIAID
Phillips 32, U12459, Ric.austrl
Rickettsia bellii VP Philip et al. 1983 RML 369-C, L36103, Ric.belli2
Rickettsia canadensis AL McKiel et al. 1967 2678, L36104, Ric.canad2 | ATCC VR 610
Rickettsia conorii AL Brumpt 1932 NIAID Malish 7 | ATCC VR-613
Rickettsia felis VP Bouyer et al. 2001 78 Ctenocephalides felis-LSU 79
Rickettsia helvetica VP Beati et al. 1993 C3
Rickettsia honei VP Stenos et al. 1998 RB, U17645, Ric.honei | ATCC VR-1472
Rickettsia japonica VP Uchida et al. 1992 YH | ATCC VR-1363
Rickettsia massiliae VP Beati and Raoult 1993 Mtu1, L36214, Ric.massi2
Rickettsia montanensis VP Weiss and Moulder 1984 Tick | ATCC VR-611, L36215,
Ric.monta2
Rickettsia parkeri AL Lackman et al. 1965 NIAID maculatum 20, L36673, Ric.parker |
NIAID maculatum 20, U12461, Ric.parke2
Rickettsia peacockii VP Niebylski et al. 1997 Skalkaho, U55820, Ric.peacck
Rickettsia rhipicephali VP (ex Burgdorfer) Weiss and Moulder 1988 Burgdorfer 3-7-
wbl.6, L36216, Ric.rhicp2
Rickettsia rickettsii AL (Wolbach 1919) Brumpt 1922 ATCC VR 149, L36217
Rickettsia sennetsu AL Misao and Kobayashi 1956 -> Ehrlichia sennetsu Miyayama,
M73219 | ATCC VR 367
Rickettsia sibirica AL Zdrodovskii 1948 246, L36218, Ric.sibiri | ATCC VR 151,
D38628, Ric.sibir3
Rickettsia slovaca VP Sekeyov et al. 1998
Rickettsia tsutsugamushi AL (Hayashi 1920) Ogata 1931 -> Orientia tsutsugamushi
ATCC VR 150
Rickettsia typhi AL (Wolbach and Todd 1920) Philip 1943 Wilmington, L36221, Ric.ty-
phi2 | Wilmington, M20499, Ric.typhi | Wilmington, U12463, Ric.typhi3 | ATCC
VR 144
Genus II. Orientia VP
Orientia tsutsugamushi VP (T) (Hayashi 1920) Tamura et al. 1995 <- Rickettsia tsut-
sugamushi (basonym) Karp, U17257, Ort.tsuts3 | ATCC VR 150 | Karp, D38623,
Ort.tsuts6
Family II. Anaplasmataceae AL
Genus I. Anaplasma AL (T)
Anaplasma marginale AL (T) Theiler 1910 no culture isolated, M60313, AF309866,
AF309867, AF309868, AF309869, AF311303, Ana.margin
Anaplasma bovis VP (ex Donatien and Lestoquard 1936) Dumler et al. 2001 <- Ehrlichia
bovis (basonym) 80 no culture isolated, U03775
Anaplasma caudatum VP (ex Kreier and Ristic 1963) Ristic and Kreier 1984 no culture
isolated
Anaplasma centrale VP (ex Theiler 1911) Ristic and Kreier 1984 , AF283007, AF318944
no culture isolated
Anaplasma ovis AL Lestoquard 1924 , AF309865, AF318945, NKIT36586 no culture

isolated
Anaplasma phagocytophilum VP (Foggie 1949) Dumler et al. 2001 <- Ehrlichia phago-
cytophila (basonym) = Ehrlichia equi (senior heterotypic synonym) Webster,
U02521, M73220, M73224
78
Note that the t ype st ra in is only d eposited in conjuctio n wit h a p atent applic ation and is not f re ely un ava ilable, v io lating Rule s 2 7(3) and /or
30 (3 a-b,4) a s eme nded by th e Jud icial Co mmission in 199 9 (IJ SE M 50: 22 392 244)
79
No reliab le propag ation of R. felis in cu lture and no 16 S rDNA s eq uenc e re ported.
80
In the pap er by Du mle r et al. 2 001, An aplasma b ovis is erro neou sly cited as a new co mbination
40
Anaplasma platys VP Dumler et al. 2001 <- Ehrlichia platys (basonym) 81 no culture
isolated, M82801, AF156784
Genus II. Aegyptianella AL
Aegyptianella pullorum AL (T) Carpano 1929
Genus III. Cowdria AL 82
Cowdria ruminantium AL (T) (Cowdry 1925) Moshkovski 1947 -> Ehrlichia ruminan-
tium no culture isolated, AF069758, Cow.rumin5, U03776, Cow.rumin3, U03777,
Cow.rumin4, X61659, Cow.rumina, X62432, Cow.rumin2
Genus IV. Ehrlichia AL
Ehrlichia canis AL (T) (Donatien and Lestoquard 1935) Moshkovski 1945 , AF162860,
M73221, M73226, U26740
Ehrlichia chaffeensis VP Anderson et al. 1992 Arkansas, M73222, AF147752, U23503,
U60476, U86664, U86665, Ehr.chaffe | ATCC CRL 10679
Ehrlichia equi VP Lewis et al. 1988 = Anaplasma phagocytophilum (junior het-
erotypic synonym) , AF036645, AF036646, AF036647, AF172164, AF172165,
AF172166, AF172167, M73223
Ehrlichia ewingii VP Anderson et al. 1992 Stillwater, M73227, U96436
Ehrlichia muris VP Wen et al. 1995 AS145, U15527, Ehr.muris | ATCC VR-1411
Ehrlichia phagocytophila AL (Foggie 1949) Philip 1962 -> Anaplasma phagocy-
tophilum, M73220, M73224
Ehrlichia risticii VP Holland et al. 1985 -> Neorickettsia risticii Illinois, M21290,
Ehr.ristic | ATCC VR-986, M21290, Ehr.ristic | HRC-IL, AF036648, AF036649,
AF036650, AF036651, AF036652, AF036653, AF036654, AF036655,
AF036656, AF036657, AF036658, AF036659, AF037210, AF037211,
AF170727, AF170729
Ehrlichia ruminantium VP (Cowdry 1925) Dumler et al. 2001 <- Cowdria ruminantium
(basonym) , AF069758 Welgevonden, X61659, Cow.rumin5, U03776, Cow.ru-
min3, U03777, Cow.rumin4, X61659, Cow.rumina, X62432, Cow.rumin2
Ehrlichia sennetsu VP (Misao and Kobayashi 1956) Ristic and Huxsoll 1984 <-
Rickettsia sennetsu (basonym) -> Neorickettsia sennetsu Miyayama, M73219,
Ehr.sennet | ATCC VR 367, M73225
Genus V. Neorickettsia AL
Neorickettsia helminthoeca AL (T) Philip et al. 1953 no culture isolated, U12457,
Nric.helmn
Neorickettsia risticii VP (Holland et al. 1985) Dumler et al. 2001 83 <- Ehrlichia ris-
ticii (basonym) HRC-IL | Illinois, M21290, Ehr.ristic | ATCC VR-986, M21290,
Ehr.ristic | HRC-IL
Neorickettsia sennetsu VP (Misao and Kobayashi 1956) Dumler et al. 2001 <- Ehrlichia
sennetsu (basonym) 84 Miyayama, M73219, Ehr.sennet | Miyayama, M73225 |
ATCC VR 367
Genus VI. Wolbachia AL
Wolbachia pipientis AL (T) Hertig 1936 no culture isolated, U23709, Wlb.pipie9,
X61768, Wlb.pipien, AF179630
Wolbachia melophagi AL (Noller 1917) Philip 1956 no culture isolated, X89110,
Wlb.melphg
Wolbachia persica AL Suitor and Weiss 1961 ATCC VR 331, M21292, Wlb.persic
Genus VII. Xenohaliotis VP
Candidatus "Xenohaliotis californiensis" Friedman et al. 2000 AF133090
81
In the pap er by Du mle r et al. 2 001, An aplasm a p lat ys is erro neou sly cited as a new co mbination. A c cording to R ule 27(2) b, A nap las ma
platys is illeg itimate be ca use th e de rivatio n (et ym olo gy) of the sp eci?c epithet is provided ne ith er in th e p aper by Dum ler et al. 2001 no r in
the p aper by Fren ch an d Harve y 198 3.
82
Rule 3 7a(1) state s that the n ame of a taxon must b e chan ged if the n ome nclatu ra l t ype of the t axo n is ex cluded .
83
84
41
Family III. HolosporaceaeNP

Genus I. Holospora VP (T)
Holospora undulata VP (T) (ex Hafkine 1890) Gromov and Ossipov 1981 C204
Holospora caryophila VP (ex Hafkine 1890) Preer and Preer 1982 ATCC 30694
Holospora elegans VP (ex Hafkine 1890) Preer and Preer 1982 C101
Holospora obtusa VP (ex Hafkine 1890) Gromov and Ossipov 1981 C103, X58198
Genera incertae sedis 85
Genus I. Caedibacter
Caedibacter taeniospiralis VP (T) (ex Preer et al. 1974) Preer and Preer 1982 51 | ATCC
30632
Caedibacter caryophilus VP Schmidt et al. 1987 221, X71837, Cae.caryph | ATCC
50168
Caedibacter paraconjugatus VP Quackenbush 1982 570 | ATCC 30638
Caedibacter pseudomutans VP Quackenbush 1982 51 ml | ATCC 30633
Caedibacter varicaedens VP Quackenbush 1982 7 | ATCC 30637
Genus II. Lyticum VP
Lyticum ?agellatum VP (T) Preer and Preer 1982 299 | ATCC 30700
Lyticum sinuosum VP Preer and Preer 1982 114 | ATCC 30696
Genus III. Odyssella VP
Candidatus "Odyssella thessalonicensis" Birtles et al. 2000 AF069496
Genus IV. Pseudocaedibacter VP
Pseudocaedibacter conjugatus VP (T) Quackenbush 1982 540 | ATCC 30796
Pseudocaedibacter falsus VP Quackenbush 1982 1010 | ATCC 30640
Pseudocaedibacter minutus VP Quackenbush 1982 214 | ATCC 30699
Genus V. Symbiotes AL 86
Symbiotes lectularius AL (T) (Arkwright et al. 1921) Philip 1956
Genus VI. Tectibacter VP
Tectibacter vulgaris VP (T) Preer and Preer 1982 225 | ATCC 30697
Order III. RhodobacteralesNP
Family I. RhodobacteraceaeNP 87
Genus I. Rhodobacter VP (T) 88
Rhodobacter capsulatus VP (T) (Molisch 1907) Imhoff et al. 1984 <- Rhodopseudomonas
capsulata (basonym) ATCC 11166, D13474, Rb.capsul3 | ATCC 11166, D16428,
Rb.capsul4 | ATCC 17015 | DSM 1710 | NCIB 8254 | NCIB 8286
Rhodobacter adriaticus VP (Neutzling et al. 1984) Imhoff et al. 1984 <- Rhodopseu-
domonas adriatica (basonym) -> Rhodovulum adriaticum BN 721(6II) | ATCC
35885, D13476 | DSM 2781, D16418, Rhv.adriat
Rhodobacter azotoformans VP Hiraishi et al. 1997 KA25, D70846, Rb.azofrmn | JCM
9340
Rhodobacter blasticus VP (Eckersley and Dow 1981) Kawasaki et al. 1994 <-
Rhodopseudomonas blastica (basonym) ATCC 33485, D16429, Rb.blastic | DSM
2131 | NCIMB 11576, D13478, Rb.blasti2
Rhodobacter euryhalinus VP Kompantseva 1989 -> Rhodovulum euryhalinum KA-65
| DSM 4868, D13479, Rhv.euryh2 | DSM 4868, D16426, Rhv.euryhl
Rhodobacter sphaeroides VP (van Niel 1944) Imhoff et al. 1984 <- Rhodopseudomonas
sphaeroides (basonym) ATH 2.4.1, X53853, Rb.sphrrnA | ATH 2.4.1, X53854,
Rb.sphrrnB | ATH 2.4.1, X53855, Rb.sphrrnC | ATCC 17023 | DSM 158 | NCIB 8253
Rhodobacter sul?dophilus VP (Hansen and Veldkamp 1973) Imhoff et al. 1984 <-
Rhodopseudomonas sul?dophila (basonym) -> Rhodovulum sul?dophilum DSM
1374, D16423, Rhv.sul?d
85
G oertz an d S ch mid t raise que stions reg ardin g the comp osition o f the fam ily Holo sp orace ae. Thes e are all endo sy mb ion st of p ro tis ts and
few if any h ave be en sequ enced. W it h the exception of Ho los pora, all sho uld be list ed a s inc ertae s edis
86
P lacem ent o f Symb iote s is problema tic as th is sp ecies is a n ob ligate sy mb ion t and mem bers of th is s pec ie s h ave not ye t bee n c ultiv ated .
Furthe rm ore, there has b een no work on th is ge nus sin ce the ea rly 19 70s .
87
The fa mily Rh odob act erace ae is sup ported in th e ARB tree .
88
42
Rhodobacter veldkampii VP Hansen and Imhoff 1985 Hansen 51 | ATCC 35703,

D13477, Rb.veldka2 | ATCC 35703, D16421, Rb.veldkam
Genus II. Ahrensia VP
Ahrensia kielensis VP (T) (ex Ahrens 1968) Uchino et al. 1999 IAM 12618, D88524,
Ah.kielien
Genus III. Albidovulum VP
Albidovulum inexpectatum VP (T) Albuquerque et al. 2003 FRR-10, AF465833 | ATCC
BAA-387 | DSM 12048
Genus IV. Amaricoccus VP
Amaricoccus kaplicensis VP (T) Maszenan et al. 1997 Ben 101, U88041, Amr.kaplic |
ACM 5099
Amaricoccus macauensis VP Maszenan et al. 1997 Ben 104, U88042, Amr.macaue |
ACM 5096
Amaricoccus tamworthensis VP Maszenan et al. 1997 Ben 103, U88044, Amr.tamwor |
ACM 5097
Amaricoccus veronensis VP Maszenan et al. 1997 Ben 102, U88043, Amr.verone | ACM
5098
Genus V. Antarctobacter VP
Antarctobacter heliothermus VP (T) Labrenz et al. 1998 EL-219, Y11552, Anb.helthr |
DSM 11440
Genus VI. Gemmobacter VP
Gemmobacter aquatilis VP (T) Rothe et al. 1988 ATCC 49971 | DSM 3857 | IFAM 1031
Genus VII. Hirschia VP
Hirschia baltica VP (T) Schlesner et al. 1990 ATCC 49814 | DSM 5838 | IFAM 1418,
X52909, Hir.baltic
Genus VIII. Hyphomonas VP 89
Hyphomonas polymorpha VP (T) Moore et al. 1984 PS728 | ATCC 33881 | DSM 2665,
AJ227813 | IAM 14246 | IFAM PS728
Hyphomonas adhaerens VP Weiner et al. 2000 MHS-3, AF082790 | ATCC 43965
Hyphomonas hirschiana VP Weiner et al. 1985 VP5, AF082794, Hym.hirsch | ATCC
33886 | DSM 5152
Hyphomonas jannaschiana VP Weiner et al. 1985 VP2, AF082789, Hym.janna2 | ATCC
33883, AJ227814 | DSM 5153
Hyphomonas johnsonii VP Weiner et al. 2000 MHS-2, AF082791 | ATCC 43964
Hyphomonas neptunium VP (Leifson 1964) Moore et al. 1984 <- Hyphomicrobium nep-
tunium (basonym) LE670, AF082798, Hym.neptun | ATCC 15444 | DSM 5154 |
IFAM LE670, AF082798, Hym.neptun
Hyphomonas oceanitis VP Weiner et al. 1985 SCH89, AF082797, Hym.oceani | ATCC
33879 | DSM 5155 | IFAM 1325
Hyphomonas rosenbergii VP Weiner et al. 2000 VP6, AF082795 | ATCC 43869
Genus IX. Jannaschia VP
Jannaschia helgolandensis VP (T) Wagner-Dbler et al. 2003 Hel 10, AJ438157 | DSM
14858 | NCIMB 13941
Genus X. Ketogulonicigenium VP
Ketogulonicigenium vulgare VP (T) Urbance et al. 2001 90 DSM 4025
Ketogulonicigenium robustum VP Urbance et al. 2001 X6L | KCTC 0858BP | NRRL
B-21627
Genus XI. Leisingera VP
Leisingera methylohalidivorans VP (T) Schaefer et al. 2002 MB2, AY005463 | ATCC
BAA-92 | DSM 14336
Genus XII. Maricaulis VP
89
90
43
Maricaulis maris VP (T) (Poindexter 1964) Abraham et al. 1999 <- Caulobacter maris
(basonym) = Caulobacter halobacteroides (heterotypic synonym) CM 11 | ATCC
15268, AJ007807, Cau.maris1
Maricaulis parjimensis VP Abraham et al. 2002 MCS 25, AJ227808 | CIP 107440 | LMG
19863
Maricaulis salignorans VP Abraham et al. 2002 MCS 18, AJ227806 | CIP 107439 | LMG
19864
Maricaulis virginensis VP Abraham et al. 2002 VC-5, AJ301667 | CIP 107438 | LMG
21018 | VKM B-1513
Maricaulis washingtonensis VP Abraham et al. 2002 MCS 6, AJ227804 | CIP 107441 |
LMG 19865
Genus XIII. Methylarcula VP
Methylarcula marina VP (T) Doronina et al. 2000 h1, AF030436 | VKM B-2159,
AF030436
Methylarcula terricola VP Doronina et al. 2000 h37, AF030437 | VKM B-2160,
AF030437
Genus XIV. Oceanicaulis VP
Oceanicaulis alexandrii VP (T) Strmpl et al. 2003 C116-18, AJ309862 | DSM 11625,
NCIMB 13905
Genus XV. Octadecabacter VP
Octadecabacter arcticus VP (T) Gosink et al. 1998 238, U73725, Oct.arctic
Octadecabacter antarcticus VP Gosink et al. 1998 307, U14583, Oct.antarc
Genus XVI. Pannonibacter VP
Pannonibacter phragmitetus VP (T) Borsodi et al. 2003 C6/19, AJ400704 | DSM 14782 |
NCAIM B02025
Genus XVII. Paracoccus VP 91
Paracoccus denitri?cans AL (T) (Beijerinck and Minkman 1910) Davis 1969 emend.
Rainey et al. 1999 ATCC 17741 | ATCC 17741, Y16927, Par.denit3 | DSM 65 |
DSM 65, Y16935, Par.pnttr2 | IAM 12479, D13480, Par.denit2 | ICPB 3979 | IMET
10380 | LMD 22.21, Y16928, Par.denit4 | LMG 4218, X69159, Par.denitr | NCIB
11627
Paracoccus alcaliphilus VP Urakami et al. 1989 TK 1015 | Urakami 0-100 | ATCC 51199
| DSM 8512 | JCM 7364, D32238, Par.alcalp | NCIMB 13180
Paracoccus alkenifer VP Lipski et al. 1998 A901/1, Y13827, Par.alkenf | DSM 11593
Paracoccus aminophilus VP Urakami et al. 1990 DM-15 | ATCC 49673 | DSM 8538 |
IAM 14245 | JCM 7686, D32239, Par.amphil
Paracoccus aminovorans VP Urakami et al. 1990 DM-82 | ATCC 49632 | DSM 8537 |
IAM 14244 | JCM 7685, D32240, Par.amvora
Paracoccus carotinifaciens VP Tsubokura et al. 1999 E-396, AB006899 | NBRC 16121
Paracoccus halodenitri?cans AL Robinson and Gibbons 1952) Davis 1969 ->
Halomonas halodenitri?cans ATCC 13511, L04942, Hlm.halden | CCM 286 |
DSM 735 | NCMB 700
Paracoccus kocurii VP Ohara et al. 1990 B | ATCC 49631 | CCM 4333 | DSM 8536 | IAM
14243 | JCM 7684, D32241, Par.kocuri
Paracoccus kondratievae VP Doronina and Trotsenko 2001 92 GB, AF250332 | VKM
B-2222
Paracoccus marcusii VP Harker et al. 1998 MH1 | DSM 11574
Paracoccus methylutens VP Doronina et al. 1998 DM12, AF250334 | VKM B-2164
Paracoccus pantotrophus VP (Robertson and Kuenen 1984) Rainey et al. 1999 <-
Thiosphaera pantotropha (basonym) GB 17 | ATCC 35512, Y16933, Par.pnttro |
DSM 2944 | LMD 82.5
91
92
44
Paracoccus seriniphilus VP Pukall et al. 2003 MBT-A4, AJ428275 | CIP 107400 | DSM
14827
Paracoccus solventivorans VP Siller et al. 1996 emend. Lipski et al. 1998 L1 | DSM
6637, Y07705, Par.solven
Paracoccus thiocyanatus VP Katayama et al. 1996 THI 011, D32242, Par.thcyan | IAM
12816 | NBRC 14569
Paracoccus versutus VP (Harrison 1983) Katayama et al. 1996 <- Thiobacillus versutus
(basonym) A2 | ATCC 25364 | ATCC 25364, Y16932, Par.versu4 | CCM 2505 | DSM
582 | IAM 12814, D32243, Par.versu2
Paracoccus yeei VP Daneshvar et al. 2003 ATCC BAA-599 | CCUG 46822 | CDC
G1212, AY014173
Paracoccus zeaxanthinifaciens VP Berry et al. 2003 ATCC 21588, AF461158 | LMG
21293 | R-1512
Genus XVIII. Pseudorhodobacter VP
Pseudorhodobacter ferrugineus VP (T) (Rger and H?e 1992) Uchino et al. 2003 <-
Agrobacterium ferrugineum (basonym) ATCC 25652 | IAM 12616, D88522
Genus XIX. Rhodobaca VP
Rhodobaca bogoriensis VP (T) Milford et al. 2001 93 LBB1, AF248638 | ATCC 700920
Genus XX. Rhodothalassium VP 94
Rhodothalassium salexigens VP (T) (Drews 1982) Imhoff et al. 1998 <- Rhodospiril-
lum salexigens (basonym) WS 68 | ATCC 35888, D14431, Rt.salexi2 | DSM 2132,
M59070, Rt.salexig
Genus XXI. Rhodovulum VP 95
Rhodovulum sul?dophilum VP (T) (Hansen and Veldkamp 1973) Hiraishi and Ueda 1994
<- Rhodobacter sul?dophilus (basonym) Hansen W4, D13475, Rhv.sul?2 | ATCC
35886 | DSM 1374, D16423, Rhv.sul? d
Rhodovulum adriaticum VP (Neutzling et al. 1984) Hiraishi and Ueda 1994 <-
Rhodobacter adriatica (basonym) Imhoff 6II | ATCC 35885, D13476, Rhv.adria2
| BN 721 (6II) | DSM 2781, D16418, Rhv.adriat
Rhodovulum euryhalinum VP (Kompantseva 1989) Hiraishi and Ueda 1994 <-

Rhodobacter euryhalinus (basonym) KA-65 | DSM 4868, D13479, Rhv.euryh2 |
DSM 4868, D16426, Rhv.euryhl
Rhodovulum iodosum VP Straub et al. 1999 N1, Y15011, Rhv.iodosm | DSM 12328
Rhodovulum robiginosum VP Straub et al. 1999 N2, Y15012, Rhv.robign | DSM 12329
Rhodovulum strictum VP Hiraishi and Ueda 1995 MB-G2, D16419, Rhv.strict | ATCC
51905 | DSM 11289 | JCM 9220
Genus XXII. Roseibium VP
Roseibium denhamense VP (T) Suzuki et al. 2000 OCh 254, D85832 | ATCC BAA-251 |
CIP 107047 | JCM 10543
Roseibium hamelinense VP Suzuki et al. 2000 OCh 368, D85836 | ATCC BAA-252 | CIP
107048 | JCM 10544
Genus XXIII. Roseinatronobacter VP
Roseinatronobacter thiooxidans VP (T) Sorokin et al. 2000 ALG 1, AF249749 | DSM
13087
Genus XXIV. Roseivivax VP
Roseivivax halodurans VP (T) Suzuki et al. 1999 OCh 239, D85829 | JCM 10272
Roseivivax halotolerans VP Suzuki et al. 1999 OCh 210, D85831 | JCM 10271
Genus XXV. Roseobacter VP 96
Roseobacter litoralis VP (T) Shiba 1991 Och 149 | ATCC 49566, X78312, Ros.litora |
DSM 6996
93
94
Mem ber o f th e a lph a-3 subg ro up se nsu Im hoff. H owever, Imh off n otes that the branc hing is q uit e d eep and plac eme nt s om ewha t un ce rt ain .
B LAS T, RDP and hea tmap a nalysis sug gest o therwise .
95
96
45
Roseobacter algicola VP Lafay et al. 1995 -> Ruegeria algicola FF3 | ATCC 51440,
X78315, Rg.algicoo | DSM 10251
Roseobacter denitri?cans VP Shiba 1991 Och 114, L01784, Ros.denit3 | Och 114,
M96746, Ros.denit2 | ATCC 33942 | DSM 7001
Roseobacter gallaeciensis VP Ruiz-Ponte et al. 1998 BS107, Y13244, Ros.gallci | CIP
105210 | DSM 12440
Genus XXVI. Roseovarius VP
Roseovarius tolerans VP (T) Labrenz et al. 1999 EL-172, Y11551, Rv.toleran | DSM
11457
Genus XXVII. Rubrimonas VP
Rubrimonas cliftonensis VP (T) Suzuki et al. 1999 OCh 317, D85834 | JCM 10189
Genus XXVIII. Ruegeria VP
Ruegeria atlantica VP (T) (Rger and H?e 1992) Uchino et al. 1999 <- Agrobacterium
atlanticum (basonym) 1480 | DSM 5823 | IAM 14463, D88526, Rg.atlanti
Ruegeria algicola VP (Lafay et al. 1995) Uchino et al. 1999 <- Roseobacter algicola
(basonym) FF3 | ATCC 51440, X78315 | DSM 10251 | IAM 14591
Ruegeria gelatinovorans VP (Rger and H? e 1992) Uchino et al. 1999 <- Agrobac-
terium gelatinovorum (basonym) B6 | ATCC 25655 | DSM 5887 | IAM 12617,
D88523, Rg.gelatin
Genus XXIX. Sagittula VP
Sagittula stellata VP (T) Gonzalez et al. 1997 E-37, U58356, Sag.stllat | ATCC 700073 |
DSM 11524
Genus XXX. Silicibacter VP
Silicibacter lacuscaerulensis VP (T) Petursdottir and Kristjansson 1999 ITI-1157,
U77644 | DSM 11314
Silicibacter pomeroyi VP Gonzlez et al. 2003 DSS-3, AF098491 | ATCC 700808 | DSM
15171
Genus XXXI. Staleya VP
Staleya guttiformis VP (T) Labrenz et al. 2000 EL-38, Y16427 | DSM 11458
Genus XXXII. Stappia VP
Stappia stellulata VP (T) (Rger and H?e 1992) Uchino et al. 1999 <- Agrobacterium
stellulatum (basonym) ATCC 15215 | DSM 5886 | IAM 12621, D88525, Sta.stellu
Stappia aggregata VP (ex Ahrens 1968) Uchino et al. 1999 IAM 12614, D88520
Genus XXXIII. Sul?tobacter VP
Sul?tobacter pontiacus VP (T) Sorokin 1996 ChLG 10, Y13155, Sft.pntiac | DSM 10014
| LMD 95.85 | VKM B-2022
Sul?tobacter brevis VP Labrenz et al. 2000 EL-162, Y16425 | DSM 11443

Sul?tobacter delicatus VP Ivanova et al. 2004 ATCC BAA-321 | KMM 3584, AY180103
| LMG 20554
Sul?tobacter dubius VP Ivanova et al. 2004 ATCC BAA-320, | KMM 3554, AY180102
| LMG 20555
Sul?tobacter mediterraneus VP Pukall et al. 1999 CH-B427, Y17387, Sft.medter | DSM

12244
Order IV. SphingomonadalesNP
Family I. Sphingomonadaceae VP
Genus I. Sphingomonas VP (T)
Sphingomonas paucimobilis VP (T) (Holmes et al. 1977) Yabuuchi et al. 1990 <-
Pseudomonas paucimobilis (basonym) ATCC 29837, U20776, Spg.pauci6 |
ATCC 29837, U37337, Spg.pauci8 | DSM 1098, X72722, Spg.paucim | GIFU
2395, D16144, Spg.pauci3 | JCM 7516 | LMG 1227 | NCPPB 3838 | NCTC 11030
Sphingomonas adhaesiva VP Yabuuchi et al. 1990 Op-55 | ATCC 51229 | DSM 7418 |
GIFU 11458, D16146, Spg.adhae2 | IAM 14270 | JCM 7370, X72720, Spg.adhaes
Sphingomonas alaskensis VP Vancanneyt et al. 2001 -> Sphingopyxis alaskensis
RB2256, AF145754 | DSM 13593 | LMG 18877
46
Sphingomonas aquatilis VP Lee et al. 2001 97 JSS7, AF131295 | KCCM 41067 | KCTC
2881
Sphingomonas aromaticivorans VP Balkwill et al. 1997 -> Novosphingobium aromati-
civorans F199 | DSM 12444 | SMCC F199, U20756, Spg.spF199
Sphingomonas asaccharolytica VP Takeuchi et al. 1995 Y-345 | DSM 10564 | IFO15499,
Y09639 | NBRC 15499
Sphingomonas capsulata VP (Leifson 1962) Yabuuchi et al. 1990 <- Flavobacterium
capsulatum (basonym) -> Novosphingobium capsulatum ATCC 14666 | DSM
30196 | GIFU 11526, D16147, Spg.capsu2 | IAM 14271 | NBRC 12533 | JCM 7508 |
LMG 2830 | NCIB 9890
Sphingomonas chlorophenolica VP Nohynek et al. 1996 -> Sphingobium chlorophe-
nolicum ATCC 33790, U60171, Spg.chlor3 | ATCC 33790, X87161, Spg.chloro |
DSM 7098
Sphingomonas cloacae VP Fujii et al. 2001 98 S-3, AB040739 | IAM 14885 | JCM 10874
Sphingomonas chungbukensis VP Kim et al. 2000 DJ77, AF159257 | KCTC 2955 | IM-
SNU 11152
Sphingomonas echinoides VP (Heumann 1962) Denner et al. 1999 <- Pseudomonas echi-
noides (basonym) ATCC 14820, AB021370 | DSM 1805, AJ012461 | DSM 50409
| ICPB 2835 | NCIB 9420
Sphingomonas herbicidovorans VP Zipper et al. 1997 -> Sphingobium herbicidovorans

MH | DSM 11019
Sphingomonas koreensis VP Lee et al. 2001 99 JSS26, AF131296 | KCCM 41069 | KCTC
2882
Sphingomonas macrogoltabidus VP Takeuchi et al. 1993 -> Sphingopyxis macro-
goltabida 203 | ATCC 51380 | DSM 8826 | NBRC 15033, D13723, Spg.macgol
Sphingomonas mali VP Takeuchi et al. 1995 Y-351 | DSM 10565 | NBRC 15500,
Y09638, Spg.mali2
Sphingomonas melonis VP Buonaurio et al. 2002 DAPP-PG 224, AB055863 | DSM
14444 | LMG 19484
Sphingomonas natatoria VP (Sly 1985) Yabuuchi et al. 1999 <- Blastomonas natatoria
(basonym) ACM 2507 | ATCC 35951 | DSM 3183, Y13774 | JCM 10396 | NCIMB
12085 100
Sphingomonas parapaucimobilis VP Yabuuchi et al. 1990 OH 3807 | ATCC 51231 | DSM
7463 | GIFU 11387 | IAM 14268 | JCM 7510, X72721, Spg.ppauci | LMG 10923
Sphingomonas pituitosa VP Denner et al. 2001 EDIV, AJ243751 | CIP 106154 | DSM
13101
Sphingomonas pruni VP Takeuchi et al. 1995 Y-250 | DSM 10566 | NBRC 15498,
D28568, Spg.pruni | NBRC 15498, Y09637, Spg.pruni2
Sphingomonas rosa VP Takeuchi et al. 1995 -> Novosphingobium rosa DSM 7285 | IAM
14222, D13945, Spg.rosa | NBRC 15208, D13945, Spg.rosa | NCPPB 2661
Sphingomonas rosei?ava VP Yun et al. 2000 MK341, D84520 | IAM 14823
Sphingomonas sanguinis VP Takeuchi et al. 1993 GIFU 2397 | NBRC 13937, D13726,
Spg.sangui
Sphingomonas stygia VP Balkwill et al. 1997 -> Novosphingobium stygium B0712 |
DSM 12445 | SMCC B0712, U20775, Spg.spB712
Sphingomonas subarctica VP Nohynek et al. 1996 -> Novosphingobium subarcticum
KF1, X94102, Spg.subarc | DSM 10700 | HAMBI 2110
97
98
99
10 0
B lastom onas nata toria wa s transferred to S phingom onas as S phingo mon as na tatoria. S ubs eque ntly, Hirais hi e t al. (20 00) hav e propo sed
tha t th e g enus B la sto mon as and th e species Blastomo nas n atato ria be re tain ed.
47
Sphingomonas suberifaciens VP (van Bruggen et al. 1990) Yabuuchi et al. 1999 <- Rhi-
zomonas suberifaciens (basonym) CA1 | ATCC 49355 | DSM 7465 | ICMP 12535 |
NBRC 15211, D13737 | LMG 11026 | NCPPB 3629
Sphingomonas subterranea VP Balkwill et al. 1997 -> Novosphingobium subterraneum
B0478, U20773, Spg.spB478 | DSM 12447 | SMCC B0478, U20773, Spg.spB478
Sphingomonas taejonensis VP Lee et al. 2001 101 JSS54, AF131297 | KCCM 41068 |
KCTC 2884
Sphingomonas terrae VP Takeuchi et al. 1993 -> Sphingopyxis terrae E-1-A | ATCC
51381 | DSM 8831 | NBRC 15098, D13727, Spg.terrae
Sphingomonas trueperi VP Kmpfer et al. 1997 ATCC 12417 | DSM 7225 | LMG 2141 |
LMG 2142, X97776, Spg.truepr | NCIMB 9391
Sphingomonas ursincola VP (Yurkov et al. 1997) Yabuuchi et al. 1999 <- Erythromonas
ursincola (basonym) KR-99, Y10677 | DSM 9006 | JCM 10397 102
Sphingomonas wittichii VP Yabuuchi et al. 2001 EY 4224 | RW1, AB021492 | DSM
6014, AB021492 | JCM 10273 | SMUM 2128
Sphingomonas xenophaga VP Stolz et al. 2000 BN6, X94098 | DSM 6383
Sphingomonas yanoikuyae VP Yabuuchi et al. 1990 -> Sphingobium yanoikuyae
ATCC 51230 | DSM 7462 | GIFU 9882, D16145, Spg.yanoi2 | IAM 14269 | JCM
7371, X72725, Spg.yanoi4 | LMG 11252
Genus II. Blastomonas VP 103
Blastomonas natatoria VP (T) (Sly 1985) Sly and Cahill 1997 <- Blastobacter natatorius
(basonym) -> Sphingomonas natatoria ACM 2507 | ATCC 35951 | DSM 3183,
Y13774, Bla.natato | NCIMB 12085 | UQM 2507
Blastomonas ursincola VP (Yurkov et al. 1997) Hiraishi et al. 2000 <- Erythromonas
ursincola (basonym) KR-99 | DSM 9006, AB024289
Genus III. Erythrobacter VP
Erythrobacter longus VP (T) Shiba and Simidu 1982 OCh101, L01786, Erb.longu4 |
OCh101, M59062, Erb.longus | OCh101, M96744, Erb.longu3 | ATCC 33941 | DSM
6997 | IAM 14242 | NBRC 14126 | JCM 6170, D12699, Erb.longu5
Erythrobacter citreus VP Denner et al. 2002 RE35F/1, AF118020 | CIP 107092 | DSM
14432
Erythrobacter ?avus VP Yoon et al. 2003 SW-46, AF500004 | JCM 11808 | KCCM 41642
Erythrobacter litoralis VP Yurkov et al. 1994 T4, X72962, Erb.litorl | DSM 8509,
AB013354, Erb.litor2 | IAM 14332
Genus IV. Erythromicrobium VP
Erythromicrobium ramosum VP (T) Yurkov et al. 1994 E5, X72909, Erm.ramosu | DSM
8510, AB013355, Erm.ramos2 | IAM 14332 | NCIMB 13404
Genus V. Erythromonas VP
Erythromonas ursincola VP (T) Yurkov et al. 1997 -> Sphingomonas ursincola KR-99,
Y10677, Ery.ursinc | DSM 9006
Genus VI. Novosphingobium VP
Novosphingobium capsulatum VP (T) (Leifson 1962) Takeuchi et al. 2001 104 <- Sphin-
gomonas capsulata (basonym) ATCC 14666 | DSM 30196 | GIFU 11526, D16147,
Spg.capsu2 | IAM 14271 | NBRC 12533 | JCM 7508 | LMG 2830 | NCIB 9890
10 1
Note that a su bcultu re of the type st ra in is o nly d eposited in one pu blic c ollec tio n o r may o therwise be in v io lat ion of Rules 27 (3 ) and /or
10 2
There a re co mpe ting propo sals re garding th is sp ecies. Yabu uch i e t al. hav e prop os ed th at Ery throm onas urs inc ola be trans ferred to
S phingom onas a s Sph ing omo nas ursincola. Su bse quen tly, Hira is hi et a l. ha ve propo sed tha t E ry throm onas u rs inco la be tra ns ferre d to
B lastom onas as B la sto mona s ursincola.
10 3
There a re comp etin g p ro posals reg ardin g th is ge nus. Ya buuc hi et al. hav e c om bin ed E ryth ro mon as and Blas tomo nas with S phingo mon as .
Hira ishi et al. ha ve propo sed tha t E rythrom ona s b e com bin ed with Blas tomo nas and the latter b e reta ine d.
10 4
48
Novosphingobium aromaticivorans VP (Balkwill et al. 1997) Takeuchi et al. 2001 105

<- Sphingomonas aromaticivorans (basonym) F199 | DSM 12444 | SMCC F199,
U20756, Spg.spF199
Novosphingobium hassiacum VP Kmpfer et al. 2002 W-51, AJ416411 | CIP 107176 |
DSM 14552
Novosphingobium rosa VP (Takeuchi et al. 1995) Takeuchi et al. 2001 106 <- Sphin-
gomonas rosa (basonym) DSM 7285 | IAM 14222, D13945, Spg.rosa | NBRC
15208, D13945, Spg.rosa | NCPPB 2661
Novosphingobium stygium VP (Balkwill et al. 1997) Takeuchi et al. 2001 107 <-
Sphingomonas stygia (basonym) B0712 | DSM 12445 | SMCC B0712, U20775,
Spg.spB712
Novosphingobium subarcticum VP (Nohynek et al. 1996) Takeuchi et al. 2001 108 <-
Sphingomonas subarctica (basonym) KF1, X94102, Spg.subarc | DSM 10700 |
HAMBI 2110
Novosphingobium subterraneum VP (Balkwill et al. 1997) Takeuchi et al. 2001 109 <-
Sphingomonas subterranea (basonym) B0478, U20773, Spg.spB478 | DSM 12447
| SMCC B0478, U20773, Spg.spB478
Novosphingobium tardaugens VP Fujii et al. 2003 ARI-1, AB070237 | ATCC BAA-531

| NBRC 16725 | JCM 11434
Genus VII. Porphyrobacter VP

Porphyrobacter neustonensis VP (T) Fuerst et al. 1993 ACM 2844, L01785, Ppb.neust2
| ACM 2844, M96745, Ppb.neusto | DSM 9434
Porphyrobacter cryptus VP da Costa et al. 2003 ALC-2, AF465834 | DSM 12079

Porphyrobacter sanguineus VP Hiraishi et al. 2002 A91 | ATCC 25659 | IAM 12620,
AB021493
Porphyrobacter tepidarius VP Hanada et al. 1997 OT3, D84429, Ppb.tepida | DSM
10594
Genus VIII. Rhizomonas VP 110
Rhizomonas suberifaciens(T) van Bruggen et al. 1990 nom. rej. -> Sphingomonas
suberifaciens CA1 | ATCC 49355 | DSM 7465 | ICMP 12535 | LMG 11026 | NCPPB
3629
Genus IX. Sandaracinobacter VP
Sandaracinobacter sibiricus VP (T) Yurkov et al. 1997 RB16-17, Y10678, San.sibiri
Genus X. Sphingobium VP
Sphingobium yanoikuyae VP (T) (Yabuuchi et al. 1990) Takeuchi et al. 2001 111 <- Sphin-
gomonas yanoikuyae (basonym) ATCC 51230 | DSM 7462 | GIFU 9882, D16145,
Spg.yanoi2 | IAM 14269 | NBRC 15102, D13728 | JCM 7371, X72725, Spg.yanoi4
| LMG 11252
Sphingobium chlorophenolicum VP (Nohynek et al. 1996) Takeuchi et al. 2001 112 <-
Sphingomonas chlorophenolica (basonym) ATCC 33790, U60171, Spg.chlor3 |
ATCC 33790, X87161, Spg.chloro | DSM 7098 | NBRC 1672
10 5
10 6
10 7
10 8
10 9
110
WARNING The n ame s R hizom onas an d Rhizomon as su berif caiens a re re jec ted and ille git ima te an d s hou ld not b e us ed.
111
N ote that a su bcultu re of the type stra in is only dep osited in o ne public c olle ction or m ay ot herwis e be in v iolation of Rules 27(3) and /or
112
Not e th at a subculture of the typ e strain is only de posite d in one pub lic co llect ion or may o therwise be in v io lation of Rules 27 (3 ) and /or
49
Sphingobium herbicidovorans VP (Zipper et al. 1997) Takeuchi et al. 2001 113 <- Sphin-
gomonas herbicidovorans (basonym) MH | DSM 11019 | NBRC 16415, AB042233
Genus XI. Sphingopyxis VP
Sphingopyxis macrogoltabida VP (T) (Takeuchi et al. 1993) Takeuchi et al. 2001 114 <-
Sphingomonas macrogoltabidus (basonym) 203 | ATCC 51380 | DSM 8826 | NBRC
15033, D13723, Spg.macgol
Sphingopyxis alaskensis VP (Vancanneyt et al. 2001) Godoy et al. 2003 <- Sphin-
gomonas alaskensis (basonym) S37, AF367204 | DSM 13593 | LMG 18877 |
RB2256
Sphingobium amiense VP Ushiba et al. 2003 YT, AB047364 | CIP 107839 | IAM 15006
| JCM 11777
Sphingopyxis chilensis VP Godoy et al. 2003 S37, AF367204 | DSM 14889 | LMG 20986
Sphingopyxis terrae VP (Takeuchi et al. 1993) Takeuchi et al. 2001 115 <- Sphingomonas
terrae (basonym) E-1-A | ATCC 51381 | DSM 8831 | NBRC 15098, D13727,
Spg.terrae
Sphingopyxis wit?ariensis VP Kmpfer et al. 2002 W-50, AJ416410 | CIP 107174 | DSM
14551
Genus XII. Zymomonas AL
Zymomonas mobilis subsp. mobilis AL (T) (Lindner 1928) De Ley and Swings 1976
ATCC 10988, AF281031 | DSM 424 | NCIB 8938 | NRRL B-806
Zymomonas mobilis subsp. pomaceae AL (Millis 1956) De Ley and Swings 1976 ATCC
29192, AF281032 | NCIB 11200
Order V. Caulobacterales AL 116
Family I. Caulobacteraceae AL
Genus I. Caulobacter AL (T)
Caulobacter vibrioides AL (T) Henrici and Johnson 1935 = Caulobacter crescentus (junior
heterotypic synonym) Stove CB51 | VKM B-1496, AJ009957
Caulobacter bacteroides AL Poindexter 1964 -> Brevundimonas bacteroides CB 7,
M83796, Cau.bacter | ATCC 15254, AB008513, Cau.bacte2 | DSM 4726 | LMG
15096, AJ227782
Caulobacter crescentus AL Poindexter 1964 = Caulobacter vibrioides (senior het-
erotypic synonym) CB 2, M83799, Cau.cres4 | ATCC 15252, AJ227756 | DSM
4727
Caulobacter fusiformis AL Poindexter 1964 CB 27 | ACM 5108, AJ007803, Cau.fusfo2 |
ATCC 15257, AB008533, Cau.fusfor | ATCC 15257, AJ007803, Cau.fusfo2 | ATCC
15257, AJ227759, Cau.fusfo3 | DSM 4728
Caulobacter halobacteroides AL Poindexter 1964 = Maricaulis maris (heterotypic syn-
onym) CM 13 | ATCC 15269, AJ227803 | ATCC 15269, AJ007804, Cau.halbac |
DSM 4729
Caulobacter henricii AL Poindexter 1964 CB4 | ACM 5105, AJ007805, Cau.henri2 |
ATCC 15253, AB008532, Cau.henric | ATCC 15253, AJ007805, Cau.henri2 | ATCC
15253, AJ227758, Cau.henri3 | DSM 4730
Caulobacter intermedius AL Poindexter 1964 -> Brevundimonas intermedia CB63 |
ACM 2608, AJ007802, Cau.interm | ATCC 15262, AJ007802, Cau.interm | ATCC
15262, AB023784, Cau.inter2 | DSM 4732 | MBIC2712, AB023784, Cau.inter2
Caulobacter leidyi AL Poindexter 1964 CB 37 | ATCC 15260 | ATCC 15260, AJ007806,
Cau.leidy3 | ATCC 15260, AJ227812, Cau.leidy2 | ATCC 15260, AB008391,
Cau.leidy1 | DSM 4733 117
113
Not e th at a s ubculture of the typ e strain is only de posite d in one pub lic co llect ion or may o therwise be in v io lation of Rules 27 (3 ) and /or
114
115
116
Lud wig recognize s the group but in dicate s that it ca nnot be reliably reso lv ed in the ARB tree .
117
Note tha t Cau lob acter le idyi is m ore clo sely rela ted to S phingo mona s that to o ther s pec ies of Ca ulo bac ter.
50
Caulobacter maris AL Poindexter 1964 -> Maricaulis maris CM 11 | ATCC 15268,

AJ007807, Cau.maris1 | DSM 4734
Caulobacter segnis VP (Urakami et al. 1990) Abraham et al. 1999 <- Mycoplana seg-
nis (basonym) ATCC 21756 | DSM 7131 | NBRC 13240, D13947, Myp.segnis |
TK0059
Caulobacter subvibrioides AL Poindexter 1964 -> Brevundimonas subvibrioides CB
81 | ATCC 15264, AB008392, Cau.subvi3 | ATCC 15264, X94470, Cau.subvi2 |
DSM 4735
Caulobacter variabilis VP (ex Poindexter 1964) Poindexter 1989 -> Brevundimonas
variabilis CB17 | ACM 5107, AJ007808, Cau.variab | ATCC 15255, AJ007808,
Cau.variab | DSM 4737
Genus II. Asticcacaulis AL
Asticcacaulis excentricus AL (T) Poindexter 1964 CB 48 | ACM 1263, AJ007800, Asc.ex-
cen2 | ATCC 15261, AB016610, Asc.excent | ATCC 15261, AJ007800, Asc.excen2
| ATCC 15261, AF115499, Asc.excen3 | DSM 4724
Asticcacaulis biprosthecium AL Pate et al. 1973 C-19 | ACM 2498, AJ007799,

Asc.bipro2 | ATCC 27554, AB014055, Asc.bipros | ATCC 27554, AJ007799,
Asc.bipro2 | DSM 4723
Genus III. Brevundimonas VP
Brevundimonas diminuta VP (T) (Leifson and Hugh 1954) Segers et al. 1994 <- Pseu-
domonas diminuta (basonym) ATCC 11568, M59064, Br.diminu2 | CCEB 513 |
CCUG 1427 | DSM 7234 | IMET 10409 | LMG 2089
Brevundimonas alba VP Abraham et al. 1999 CB88 | DSM 4736, M59179
Brevundimonas aurantiaca VP Abraham et al. 1999 CB-R, AJ227787 | DSM 4731
Brevundimonas bacteroides VP (Poindexter 1964) Abraham et al. 1999 <- Caulobacter
bacteroides (basonym) CB 7, M83796 | ATCC 15254, AB008513 | DSM 4726 |
LMG 15096, AJ227782
Brevundimonas intermedia VP (Poindexter 1964) Abraham et al. 1999 <- Caulobacter
intermedius (basonym) CB63 | ACM 2608, AJ007802 | ATCC 15262, AB023784 |
ATCC 15262, AJ007802 | DSM 4732 | MBIC2712, AB023784
Brevundimonas subvibrioides VP (Poindexter 1964) Abraham et al. 1999 <- Caulobacter
subvibrioides (basonym) CB81 | ATCC 15264, AB008392 | ATCC 15264, X94470
| DSM 4735 | LMG 14903, AJ227784
Brevundimonas variabilis VP (Poindexter 1989) Abraham et al. 1999 <- Caulobacter

variabilis (basonym) CB17 | ACM 5107, AJ007808 | ATCC 15255, AJ007808 |
ATCC 15255, AJ227783 | DSM 4737
Brevundimonas vesicularis VP (Busing et al. 1953) Segers et al. 1994 <- Pseudomonas
vesicularis (basonym) ACM 2862 | ATCC 11426, AJ007801, Br.vesicu1 | CCM
3398 | CCUG 2032 | DSM 7226 | IAM 12105 | IAM 12105, AB021414, Br.vesicu3 |
JCM 1477 | LMG 2350, AJ227780, Br.vesicu2 | NCMB 1945 | NCTC 10900
Genus IV. Phenylobacterium VP 118
Phenylobacterium immobile VP (T) Lingens et al. 1985 E, Y18216, Pb.immobil | ATCC
35973 | DSM 1986 | NCIB 12055
Order VI. RhizobialesNP
Family I. Rhizobiaceae AL
Genus I. Rhizobium AL (T)
Rhizobium leguminosarum AL (T) (Frank 1879) Frank 1889 = Rhizobium trifolii (junior
heterotypic synonym) 3H0q18 | ATCC 10004, AY509899 | ATCC 10313 | CCT
5087 | DSM 30132 | NCIB 11478
Rhizobium ciceri VP Nour et al. 1994 -> Mesorhizobium ciceri ATCC 51585 | DSM
11540 | LMG 14898 | UPM-Ca7, U07934, Msu.huaku3
Rhizobium etli VP Segovia et al. 1993 ATCC 51251 | CFN 42, U28916, Rhb.etli42 | DSM
11541
118
In an early version of the outlin e, Phe nyloba cte rium app eared in the P seu dom onad ace ae.
51
Rhizobium fredii VP Scholla and Elkan 1984 -> Sinorhizobium fredii ATCC 35423,
D14516, Srh.fredi5 | DSM 5851 | LMG 6217, X67231, Srh.fredi2 | PRC 205 | USDA
205
Rhizobium galegae VP Lindstrm 1989 ATCC 43677, D11343, Rhb.galega | DSM 11542
| HAMBI 540 | LMG 6214, X67226, Rhb.galeg2 | NZP 5563
Rhizobium gallicum VP Amarger et al. 1997 MSDJ1109 | R602sp, AF008130, Rhb.gallic

| R602sp, U86343, Rhb.galli2
Rhizobium giardinii VP Amarger et al. 1997 H152, U86344, Rhb.giardi | MSDJ0144

Rhizobium hainanense VP Chen et al. 1997 CCBAU 57015 | DSM 11917 | I66, U71078,
Rhb.hainnn
Rhizobium huakuii VP Chen et al. 1991 -> Mesorhizobium huakuii 103 | ATCC 51122
| CCBAU 2609 | DSM 6573 | IAM 14158, D12797, Mso.huakui
Rhizobium huautlense VP Wang et al. 1998 S02, AF025852, Rhb.huautl

Rhizobium indigoferae VP Wei et al. 2002 119 AS 1.3054 | CCBAU 71042, AF364068
Rhizobium japonicum AL (Kirchner 1896) Buchanan 1926 -> Bradyrhizobium japon-
icum 3I1b6 | ATCC 10324 | DSM 30131
Rhizobium loti VP Jarvis et al. 1982 -> Mesorhizobium loti ATCC 33669, D14514,
Mso.loti5 | DSM 2626 | LMG 6125, X67229, Mso.loti2 | NZP 2213
Rhizobium larrymoorei VP (Bouzar and Jones 2001) Young 2004 <- Agrobacterium lar-
rymoorei (basonym) AF3.10, Z30542 | ATCC 51759 | CFBP 5473 | ICMP 14256 |
NCPPB 4096,
Rhizobium lupini AL (Schroeter 1886) Eckhardt et al. 1931 3C231 | ATCC 10319 | DSM
30140
Rhizobium mediterraneum VP Nour et al. 1995 -> Mesorhizobium mediterraneum
ATCC 51670 | DSM 11555 | UPM-Ca36, L38825, Mso.medter
Rhizobium meliloti AL Dangeard 1926 -> Sinorhizobium meliloti -> Ensifer meliloti
3D0a2 | ATCC 9930 | DSM 30135 | LMG 6133, X67222, Srh.melil3
Rhizobium mongolense VP van Berkum et al. 1998 USDA 1844, U89817, Rhb.mongol
Rhizobium phaseoli AL Dangeard 1926 3I6c15 | ATCC 14482 | DSM 30137
Rhizobium radiobacter VP (Beijerinck and van Delden 1902) Young et al. 2001 <-
Agrobacterium radiobacter (basonym) EX 3.24.2 | NCIB 9042 | ATCC 19358,
AJ389904 | DSM 30147 | NBRC 13532
Rhizobium rhizogenes VP (Riker et al. 1930) Young et al. 2001 <- Agrobacterium rhizo-
genes (basonym) ATCC 11325 | CFBP 2408 | DSM 30148 | ICMP 5794 | IFO13257,
D14501 | NBRC 13257 | IMET 11180
Rhizobium rubi VP (Hildebrand 1940) Young et al. 2001 <- Agrobacterium rubi (ba-
sonym) TR3 | ATCC 13335 | CFBP 1317 | DSM 6772 | ICMP 6428 | LMG 156,
X67228, Ag.rubi | NCPPB 1854
Rhizobium sullae VP Squartini et al. 2002 IS123 | USDA 4950, Y10170 | DSM 14623
Rhizobium tianshanense VP Chen et al. 1995 -> Mesorhizobium tianshanense A-1BS,
AF041447, Mso.tiansh | A-1BST, U71079, Mso.tians2 | CCBAU3306 | DSM 11417
Rhizobium trifolii AL Dangeard 1926 = Rhizobium leguminosarum (senior heterotypic
synonym) 3D1k22a | ATCC 14480 | CIAT 899
Rhizobium tropici VP Martnez-Romero et al. 1991 ATCC 49672 | CIAT 899, U89832,
Rhb.trop10 | LMG 9503, X77125, Rhb.tropi6
Rhizobium undicola VP (de Lajudie et al. 1998) Young et al. 2001 -> Allorhizobium
undicola LMG 11875, Y17047, Alr.undcol | ORS 992
Rhizobium vitis VP (Ophel and Kerr 1990) Young et al. 2001 <- Agrobacterium vitus (ba-
sonym) K309 | ATCC 49767 | ICMP 1075 | LMG 8750, X67225, Ag.vitis | NCPPB
3554, D14502, Ag.vitis3 | NCPPB 3554, U45329, Ag.vitis5
Rhizobium yanglingense VP Tan et al. 2001 SH 22623, AF003375 | CCBAU 71623
Genus II. Agrobacterium AL
119
52
Agrobacterium tumefaciens AL (T) (Smith and Townsend 1907) Conn 1942 = Agrobac-
terium radiobacter (senior heterotypic synonym) ATCC 23308 | CCM 1040 | CFBP
2413 | CIP B6 | DSM 30205, M11223, Ag.tumefac | ICMP 5856 | ICPB TT 3 | NCPPB
397 120
Agrobacterium atlanticum VP Rger and H? e 1992 -> Ruegeria atlantica = Agrobac-
terium meteori (heterotypic synonym) 1480 | DSM 5823
Agrobacterium ferrugineum VP (ex Ahrens and Rheinheimer 1967) Rger and H?e
1992 -> Pseudorhodobacter ferrugineus ATCC 25652 | DSM 5888 | ICPB 4164 121
Agrobacterium gelatinovorum VP (ex Ahrens 1968) Rger and H?e 1992 -> Ruegeria
gelatinovorans B6 | ATCC 25655 | DSM 5887
Agrobacterium larrymoorei VP Bouzar and Jones 2001 -> Rhizobium larrymoorei
AF3.10, Z30542 | ATCC 51759 | CFBP 5473 | NCPPB 4096
Agrobacterium meteori VP Rger and H? e 1992 = Agrobacterium atlanticum (het-
erotypic synonym) 1513 | DSM 5824
Agrobacterium radiobacter AL (Beijerinck and van Delden 1902) Conn 1942 emend.
Sawada et al. 1993 = Agrobacterium tumefaciens (junior heterotypic synonym)
-> Rhizobium radiobacter EX 3.24.2 | ATCC 19358 | DSM 30147 | NBRC 13532 |
NCIB 9042
Agrobacterium rhizogenes AL (Riker et al. 1930) Conn 1942 emend. Sawada et al.
1993 -> Rhizobium rhizogenes ATCC 11325 | CFBP 2408 | DSM 30148 | ICMP
5794 | NBRC 13257 | IMET 11180
Agrobacterium rubi AL (Hildebrand 1940) Starr and Weiss 1943 -> Rhizobium rubi
TR3 | ATCC 13335 | CFBP 1317 | DSM 6772 | ICMP 6428 | LMG 156, X67228,
Ag.rubi | NCPPB 1854

Agrobacterium stellulatum VP (ex Stapp and Knsel 1954) Rger and H?e 1992 ->
Stappia stellulata 2M/E | ATCC 15215 | DSM 5886 | ICPB 4170
Agrobacterium vitis VP Ophel and Kerr 1990 -> Rhizobium vitis K309 | ATCC 49767
| ICMP 1075 | LMG 8750, X67225, Ag.vitis | NCPPB 3554, D14502, Ag.vitis3 |
NCPPB 3554, U45329, Ag.vitis5

Genus III. Allorhizobium VP
Allorhizobium undicola VP (T) de Lajudie et al. 1998 122 -> Rhizobium undicola LMG
11875, Y17047, Alr.undcol | ORS 992
Genus IV. Carbophilus VP
Carbophilus carboxidus VP (T) (ex Nozhevnikova and Zavarzin 1974) Meyer et al. 1994
Z-1171 | ATCC 51424 | DSM 1086
Genus V. Chelatobacter VP
Chelatobacter heintzii VP (T) Auling et al. 1993 ATCC 29600 | DSM 10368
Genus VI. Ensifer VP
Ensifer adhaerens VP (T) Casida 1982 <- Sinorhizobium adhaerens (basonym) A | ATCC
33212, AF191739 | NCIB 12342 123
Ensifer arboris VP (Nick et al. 1999) Young 2003 <- Sinorhizobium arboris (basonym)
TTR 38 | ATCC BAA-226 | DSM 13375 | HAMBI 1552 | LMG 14919, AF345281
Ensifer fredii VP (Scholla and Elkan 1984) Young 2003 <- Rhizobium fredii (basonym)
PRC 205 | ATCC 35423, D14516 | CCUG 27877 | HAMBI 2075 | ICMP 11139 | IFO
14780 | LMG 6217, AF345282 | NRRL B-14594 | USDA 205, AY260149
Ensifer kostiensis VP (Nick et al. 1999) Young 2003 <- Sinorhizobium kostiense (ba-
sonym) TTR 15 | ATCC BAA-227, | DSM 13372, | HAMBI 1489, | LMG 19227,
AF345284
Ensifer kummerowiae VP (Wei et al. 2002) Young 2003 <- Sinorhizobium kummerowiae
(basonym) AS 1.3046 | CCBAU 71714, AF364067, AY034028
12 0
R ule 37a (1 ) sta tes tha t the nam e of a ta xo n m ust be cha nged if the nom enc la tural typ e of the tax on is ex clude d.
12 1
Youn g e t al. proposed tha t the type spe cies of Ag ro bac teriu m be trans ferred to t he R hiz obium , the re by dep re ca ting the ge nus A grobac -
terium. The se auth ors did not , ho wever, m ake a ny propo sal rega rd ing the trans fer o f A . fe rrug ine um t o eithe r Rhiz ob ium or a noth er gen us .
A prop osa l to do so was p ublished subsequ ently, b y Uch ino , e t al (20 03).
12 2
12 3
53
Ensifer medicae VP (Rome et al. 1996) Young 2003 <- Sinorhizobium medicae (ba-
sonym) A 321 | HAMBI 2306 | ICMP 13798 | USDA 1037, AF325824
Ensifer meliloti VP (Dangeard 1926) Young 2003 <- Rhizobium meliloti (basonym)
ATCC 9930 | CCUG 27879 | CFBP 5561 | HAMBI 2148 | ICMP 12623 | IFO 14782 |
LMG 6133, AF345286 | NCAIM B.01520 | NRRL L-45
Ensifer saheli VP (De Lajudie et al. 1994) Young 2003 <- Sinorhizobium saheli (ba-
sonym) ATCC 51690 | HAMBI 215 | ICMP 13648 | LMG 7837, X68390
Ensifer terangae VP (De Lajudie et al. 1994) Young 2003 <- Sinorhizobium terangae
(basonym) ORS 1009 | ATCC 51692 | DSM 11282 | HAMBI 220ICMP 13649 | LMG
7834, AF345288
Ensifer xinjiangensis VP (Chen et al. 1988) Young 2003 <- Sinorhizobium xinjiangense
(basonym) ATCC 49357 | CCBAU 110, AF250354 | DSM 5852, AF345289 |
HAMBI 1673 | ICMP 11141 | LMG 17930
Genus VII. Sinorhizobium VP
Sinorhizobium fredii VP (T) (Scholla and Elkan 1984) Chen et al. 1988 emend. De Lajudie
et al. 1994 <- Rhizobium fredii (basonym) ATCC 35423, D14516, Srh.fredi5 |
DSM 5851 | LMG 6217, X67231, Srh.fredi2 | PRC 205 | USDA 205
Sinorhizobium adhaerens VP (Casida 1982) Willems et al. 2003 <- Ensifer adhaerens
(basonym) A | ATCC 33212, AJ505595 | LMG 20216
Sinorhizobium arboris VP Nick et al. 1999 -> Ensifer arboris TTR 38 | HAMBI 1552,
Z78204 | LMG 14919
Sinorhizobium kostiense VP Nick et al. 1999 -> Ensifer kostiensis TTR 15 | HAMBI
1489, Z78203 | LMG 15613
Sinorhizobium kummerowiae VP Wei et al. 2002 124 -> Ensifer kummerowiae AS 1.3046
| CCBAU 71714, AF364067
Sinorhizobium medicae VP Rome et al. 1996 -> Ensifer medicae A 321

Sinorhizobium meliloti VP (Dangeard 1926) De Lajudie et al. 1994 <- Rhizobium
meliloti (basonym) -> Ensifer meliloti 3D0a2 | ATCC 9930 | DSM 30135 | LMG
6133, X67222, Srh.melil3 | NZP 4027
Sinorhizobium morelense VP Wang et al. 2002 125 Lc04, AY024335 | CFN E1007 | LMG
21331
Sinorhizobium saheli VP De Lajudie et al. 1994 DSM 11273 | LMG 7837, X68390,
Srh.saheli | ORS 609
Sinorhizobium terangae VP De Lajudie et al. 1994 -> Ensifer terangae DSM 11282 |
LMG 7854, X68391, Rhb.sp7854 | ORS 1009
Sinorhizobium xinjiangense VP Chen et al. 1988 -> Ensifer xinjiangensis ATCC 49357
| CCBAU 110 | DSM 5852 | IAM 14142, D12796, Srh.xinjia
Family II. AurantimonadaceaeNP (T)

Genus I. Aurantimonas VP (T)
Aurantimonas coralicida VP (T) Denner et al. 2003 WP1, AY065627 | CIP 107386 | DSM
14790
Genus II. Fulvimarina VP
Fulvimarina pelagi VP (T) Cho and Giovannoni 2003 ATCC BAA-666, DSM 15513 |
HTCC2506, AY178860 | KCTC 12091
Family III. Bartonellaceae AL
Genus I. Bartonella AL (T)
Bartonella bacilliformis AL (T) (Strong et al. 1913) Strong et al. 1915 ATCC 35685,
Z11683
Bartonella alsatica VP Heller et al. 1999 IBS 382, AJ002139, Bar.alsati | CIP 105477
Bartonella birtlesii VP Bermond et al. 2000 IBS 325, AF204274 | CIP 106294 | CCUG
44360
12 4
12 5
54
Bartonella bovis VP Bermond et al. 2002 91-4 | CCUG 43828, AF293391 | CIP 106692
Bartonella capreoli VP Bermond et al. 2002 IBS 193, AF293389 | CCUG 43827 | CIP
106691
Bartonella chomelii VP Maillard et al. 2004 A828, AY254309 | CCUG 47497 | CIP
107869
Bartonella clarridgeiae VP Lawson and Collins 1996 Houston-2 cat | ATCC 51734,
X89208, Bar.clardg
Bartonella doshiae VP Birtles et al. 1995 R18, Z31351, Bar.doshia | ATCC 700133 |
NCTC 12862
Bartonella elizabethae VP (Daly et al. 1993) Brenner et al. 1993 <- Rochalimaea eliza-
bethae (basonym) B91-002005 | F9251 | ATCC 49927, L01260, Bar.elizab
Bartonella grahamii VP Birtles et al. 1995 V2, Z31349, Bar.graham | ATCC 700132 |
NCTC 12860
Bartonella henselae VP (Regnery et al. 1992) Brenner et al. 1993 <- Rochalimaea hense-
lae (basonym) G5436 | Houston-1 | ATCC 49882 | CIP 103737
Bartonella koehlerae VP Droz et al. 2000 C-29, AF076237 | ATCC 700693
Bartonella peromysci VP (Ristic and Kreier 1984) Birtles et al. 1995 <- Grahamella
peromysci (basonym)
Bartonella quintana VP (Schmincke 1917) Brenner et al. 1993 <- Rochalimaea quintana
(basonym) ATCC VR 358
Bartonella schoenbuchensis VP Dehio et al. 2001 R1, AJ278187 | DSM 13525 | NCTC
13165
Bartonella talpae VP (Ristic and Kreier 1984) Birtles et al. 1995 <- Grahamella talpae
(basonym)
Bartonella taylorii VP Birtles et al. 1995 M6, Z31350, Bar.taylor | NCTC 12861
Bartonella tribocorum VP Heller et al. 1998 IBS 506, AJ003070, Bar.trbcor | CIP
105476
Bartonella vinsonii subsp. vinsonii VP (Weiss and Dasch 1982) Brenner et al. 1993
emend. Kordick et al. 1996 <- Rochalimaea vinsonii (basonym) Baker, Z31352,
Bar.vinso2 | ATCC VR-152, L01259 | CIP 103738
Bartonella vinsonii subsp. arupensis VP Welch et al. 2000 OK 94-513 | ATCC 700727
Bartonella vinsonii subsp. berkhof?i VP Kordick et al. 1996 ATCC 51672 | NCSU
93-CO1, L35052, Bar.vinso4
Family IV. Brucellaceae AL
Genus I. Brucella AL (T) 126
Brucella melitensis AL (T) (Hughes 1893) Meyer and Shaw 1920 emend. Verger et al.
1985 = Brucella abortus (junior heterotypic synonym) = Brucella canis (junior
heterotypic synonym) = Brucella neotomae (junior heterotypic synonym) = Bru-
cella ovis (junior heterotypic synonym) = Brucella suis (junior heterotypic syn-
onym) ATCC 23456, L26166, Bru.melten
Brucella abortus AL (Schmidt 1901) Meyer and Shaw 1920 = Brucella melitensis (se-
nior heterotypic synonym) ATCC 23448
Brucella canis AL Carmichael and Bruner 1968 = Brucella melitensis (senior het-
erotypic synonym) RM-666 | ATCC 23365 | NCTC 10854
Brucella neotomae AL Stoenner and Lackman 1957 = Brucella melitensis (senior het-
erotypic synonym) 5K33 | ATCC 23459, L26167, Bru.melte4
Brucella ovis AL Buddle 1956 = Brucella melitensis (senior heterotypic synonym)
63/290 | ATCC 25840, L26168, Bru.melte5
Brucella suis AL Huddleson 1929 = Brucella melitensis (senior heterotypic synonym)
ATCC 23444, L26169, Bru.melte6
Genus II. Mycoplana AL
Mycoplana dimorpha AL (T) Gray and Thornton 1928 emend. Urakami et al. 1990 103 |
ATCC 4279 | DSM 7138
12 6
Th e n omen specie s B. abortus, B. can is, B . n eoto mae, B. ov is , and B. su is c an be u se d to av oid c onfu sion, ac co rd ing The Interna tio nal
Com mittee on Syste matic Ba cte riology S ubcomm itte e on the Taxo nom y o f B ru ce lla (IJ SB , 19 88, 3 8: 450 452)
55
Mycoplana bullata AL Gray and Thornton 1928 emend. Urakami et al. 1990 79 | ATCC
4278 | ATCC 7980 | DSM 7126 | IAM 13153, D12785, Myp.bullat 127
Mycoplana ramosa VP Urakami et al. 1990 M51 of Macdonald | NCIB 9440 | ATCC
49678 | DSM 7292 | TKOO53
Mycoplana segnis VP Urakami et al. 1990 -> Caulobacter segnis ATCC 21756 | DSM
7131 | NBRC 13240, D13947, Myp.segnis | TK0059
Genus III. Ochrobactrum VP
Ochrobactrum anthropi VP (T) Holmes et al. 1988 ATCC 49687 | CIP 14970 | CIP 82.115
| DSM 6882 | LMG 3331 | NCTC 12168
Ochrobactrum gallinifaecis VP Kmpfer et al. 2003 Iso196, AJ519939 | CIP 107753 |

DSM 15295
Ochrobactrum grignonense VP Lebuhn et al. 2000 OgA9a, AJ242581 | DSM 13338 |
LMG 18954
Ochrobactrum intermedium VP Velasco et al. 1998 CNS 2-75 | LMG 3301, U70978,
Ocb.intmed | NCTC 12171
Ochrobactrum tritici VP Lebuhn et al. 2000 SCII24, AJ242584 | DSM 13340 | LMG
18957
Family V. PhyllobacteriaceaeNP
Genus I. Phyllobacterium VP (T)
Phyllobacterium myrsinacearum VP (T) Knsel 1984 = Phyllobacterium rubiacearum
(junior heterotypic synonym) ATCC 43590 | DSM 5892 | IAM 13584, D12789,
Plb.myrsin | LMG 2t2 | NCIMB 12127
Phyllobacterium rubiacearum VP Knsel 1984 = Phyllobacterium myrsinacearum (se-
nior heterotypic synonym) ATCC 43591 | DSM 5893 | LMG 1t1 | NCIMB 12128
Genus II. Aminobacter VP
Aminobacter aminovorans VP (T) (den Dooren de Jong 1926) Urakami et al. 1992
<- Pseudomonas aminovorans (basonym) TK3001 | ATCC 23314 | DSM 7048,
AJ011759, Amb.amnvor | JCM 7852 | NCIB 9039 | NCIB 9039 | NCTC 10
Aminobacter aganoensis VP Urakami et al. 1992 TH-3 | DSM 7051, AJ011760,
Amb.aganoe | JCM 7854 | JCM 7854
Aminobacter niigataensis VP Urakami et al. 1992 DM-81 | DSM 7050, AJ011761,
Amb.niigat | JCM 7853
Genus III. Aquamicrobium VP
Aquamicrobium de?uvii VP (T) Bambauer et al. 1998 NKK, Y15403 | DSM 11603
Genus IV. De?uvibacter VP
De?uvibacter lusatiensis VP (T) Fritsche et al. 1999 S1 | DSM 11099, AJ132378
Genus V. " Candidatus Liberibacter"
Candidatus "Liberibacter asiaticus" Jagoueix et al. 1994 L22532
Candidatus "Liberibacter africanus subsp. africanus" Jagoueix et al. 1994 L22533
Candidatus "Liberibacter africanus subsp. capensis" Garnier et al. 2000 AF137368
Genus VI. Mesorhizobium VP
Mesorhizobium loti VP (T) (Jarvis et al. 1982) Jarvis et al. 1997 <- Rhizobium loti
(basonym) ATCC 33669, D14514, Mso.loti5 | DSM 2626 | LMG 6125, X67229,
Mso.loti2 | NZP 2213
Mesorhizobium amorphae VP Wang et al. 1999 ACCC 19665, AF041442, Mso.amorph
Mesorhizobium chacoense VP Vel zquez et al. 2001 Pr-5, AJ278249 | CECT 5336 | LMG
19008
Mesorhizobium ciceri VP (Nour et al. 1994) Jarvis et al. 1997 <- Rhizobium ciceri (ba-
sonym) ATCC 51585 | DSM 11540 | LMG 14898 | UPM-Ca7, U07934, Msu.huaku3
Mesorhizobium huakuii VP (Chen et al. 1991) Jarvis et al. 1997 <- Rhizobium huakuii
(basonym) 103 | ATCC 51122 | CCBAU 2609 | DSM 6573 | IAM 14158, D12797,
Mso.huakui
12 7
Mycop lan a b ullata is p ro bably misn ame d. It is m ost closely re lat ed t o Ca ulo bac ter s pp.
56
Mesorhizobium mediterraneum VP (Nour et al. 1995) Jarvis et al. 1997 <- Rhizobium
mediterraneum (basonym) ATCC 51670 | DSM 11555 | UPM-Ca36, L38825,
Mso.medter
Mesorhizobium plurifarium VP de Lajudie et al. 1998 LMG 11892, Y14158, Mso.plrfar
| ORS 1032
Mesorhizobium tianshanense VP (Chen et al. 1995) Jarvis et al. 1997 <- Rhizobium tian-
shanense (basonym) A-1BS, AF041447, Mso.tiansh | A-1BS, U71079, Mso.tians2
| CCBAU 3306 | DSM 11417
Genus VII. Nitratireductor VP

Nitratireductor aquibiodomus VP (T) Labb et al. 2004 ATCC BAA-762 | DSM 15645 |
NL21, AF534573
Genus VIII. Pseudaminobacter VP
Pseudaminobacter salicylatoxidans VP (T) Kmpfer et al. 1999 BN12, AF072542,
Pab.slcylt | DSM 6986
Pseudaminobacter de?uvii VP Kmpfer et al. 1999 THI 051, D32248, Pad.d?uvi |
NBRC 14570
Family VI. MethylocystaceaeNP 128
Genus I. Methylocystis VP (T)
Methylocystis parvus VP (T) (ex Romanovskaya et al. 1978) Bowman et al. 1993 OBBP,
M29026, Mcy.parvus | ACM 3309 | ATCC 35066 | IMET 10483 | NCIMB 11129
Methylocystis echinoides VP (ex Galchenko et al. 1977) Bowman et al. 1993 IMET
10491, AJ458473 | NCIMB 13100
Genus II. Albibacter VP
Albibacter methylovorans VP (T) Doronina et al. 2001 DM10, AF273213 | DSM 13819 |
VKM B-236
Genus III. Methylopila VP 129
Methylopila capsulata VP (T) Doronina et al. 1998 IM1, AF004844, Mpi.capsul | VKM
B-1606
Methylopila helvetica VP Doronina et al. 2000 DM9, AF227126 | VKM B-2189
Genus IV. Methylosinus VP
Methylosinus trichosporium VP (T) (ex Romanovskaya et al. 1978) Bowman et al. 1993
OB3b, M29024, Msi.tricho | ACM 3311 | ATCC 35070 | IMET 10543 | NCIMB
11131
Methylosinus sporium VP (ex Romanovskaya et al. 1978) Bowman et al. 1993 ACM
3306, Y18946 | ATCC 35069 | NCIMB 11126
Genus V. Terasakiella VP
Terasakiella pusilla VP (T) (Terasaki 1973) Satomi et al. 2002 <- Oceanospirillum pusil-
lum (basonym) ATCC 33338 | CIP 103382 | DSM 6293 | IAM 14442 | LMG 7372 |
NBRC 13613, AB006768, Osp.pusil2 | NCIMB 2229
Family VII. BeijerinckiaceaeNP 130
Genus I. Beijerinckia AL (T)
Beijerinckia indica subsp. indica AL (T) (Starkey and De 1939) Derx 1950 Delft
E.II.12.1.1 | ATCC 9039, M59060, Bei.indica | DSM 1715 | NCIB 8712 | WR-119
Beijerinckia indica subsp. lacticogenes VP Thompson and Skerman 1981 ATCC 19361
| DSM 1719 | NCIB 8846 | WR-119
Beijerinckia derxii subsp. derxii AL Tchan 1957 Q13 of Tchan | ATCC 49361 | DSM 2328
| UQM 1968
Beijerinckia derxii subsp. venezuelae VP Thompson and Skerman 1981 2 of Materassi

| DSM 2329 | WR-222
Beijerinckia ?uminensis AL Dbereiner and Ruschel 1958 DSM 2327 | UQM 1685
Beijerinckia mobilis AL Derx 1950 ATCC 35011 | DSM 2326 | UQM 1969
12 8
Lu dwig ind icates su pport fo r th e family Met hylocystacea e in th e ARB tree. In h eatm aps and large s ca le an aly s is , we ?nd tha t Meth yloc ys -
tacea e an d B eirhe rinckiaceae are clo se ly rela ted and co uld be merge d, at le ast bas ed on !6S se quen ce ana ly sis.
12 9
Th e placeme nt o f M ethylo pila is provisio nal. Bowm an su gges ts tha t it be treate d a s inc ertae se dis .
13 0
In com mun ications with Ludw ig, he ma ke s no men tion of this fam ily. In the RDP tree it ap pears to s tand alone . No da ta w ere a vaila ble
for either Derxia orChe lato co ccus.
57
Genus II. Chelatococcus VP

Chelatococcus asaccharovorans VP (T) Auling et al. 1993 TE2, AJ294349 | ATCC 51531
| DSM 6462
Genus III. Methylocapsa VP

Methylocapsa acidiphila VP Dedysh et al. 2002 B2, AJ278726 | DSM 13967 | NCIMB
13765
Genus IV. Methylocella VP
Methylocella palustris VP (T) Dedysh et al. 2000 K, Y17144 | ATCC 700799
Methylocella tundrae VP Dedysh et al. 2004 T4, AJ555244 | DSM 15673 | NCIMB 13949
Family VIII. BradyrhizobiaceaeNP 131
Genus I. Bradyrhizobium VP (T)
Bradyrhizobium japonicum VP (T) (Kirchner 1896) Jordan 1982 132 <- Rhizobium japon-
icum (basonym) 3I1b6, U69638, Bdr.japo11 | ATCC 10324, U69638, Bdr.japo11
| DSM 30131, X87272, Bdr.japon8 | LMG 6138, S46916, Bdr.japo12 | LMG 6138,
X66024, Bdr.japoni | NCIB 11477 | USDA 505

Bradyrhizobium elkanii VP Kuykendall et al. 1993 133 ATCC 49852 | DSM 11554 | USDA
76, U35000, Bdr.elkani
Bradyrhizobium liaoningense VP Xu et al. 1995 2281 134 , AF363132
Bradyrhizobium yuanmingense VP Yao et al. 2002 135 CCBAU 10071, AF193818 |
CFNEB 101
Genus II. A?pia VP 136
A?pia felis VP (T) Brenner et al. 1992 AFIP strain BV | B-91-007352 | F6400 | G1492 |
ATCC 53690 | CIP 103515 | CSD1 | DSM 7326 | NCTC 12499
A?pia birgiae VP La Scola et al. 2002 34632, AF288304 | CCUG 43108 | CIP 106344
A?pia broomeae VP Brenner et al. 1992 B-91-007286 | F186 | GO382 | ATCC 49717 | CIP
103517 | DSM 7327, U87759, Afp.broom2 | NCTC 12720
A?pia clevelandensis VP Brenner et al. 1992 411m | B-91-007353 | F6703 | G1849 | ATCC
49720 | CIP 103516 | DSM 7315 | NCTC 12721
A?pia massiliensis VP La Scola et al. 2002 34633 | CCUG 45153 | CIP 107022,
AY029562
Genus III. Agromonas VP 137
Agromonas oligotrophica VP (T) Ohta and Hattori 1985 DSM 12412 | JCM 1494, D78366,
Agm.oltrph
Genus IV. Blastobacter AL 138
Blastobacter henricii AL (T) Zavarzin 1961
Blastobacter aggregatus VP Hirsch and Mller 1986 M 161, X73041 | Mller 161 | ATCC
43293 | DSM 1111 | IFAM 1003
Blastobacter capsulatus VP Hirsch and Mller 1986 M 216, X73042 | Mller 216 | ATCC
43294 | DSM 1112 | IFAM 1004
Blastobacter denitri?cans VP Hirsch and Mller 1986 M 222 | Mller 222 | ATCC 43295
| DSM 1113 | IAM 1005 | IFAM 1005 | LMG 8443, S46917, Blb.denit2 | LMG 8443,
X66025, Blb.denitr | NCIMB 12292

Blastobacter natatorius VP Sly 1985 -> Blastomonas natatoria ATCC 35951 | DSM
3183, Y13774, Bla.natato | UQM 2507
13 1
L udwig indicat es that the fa mily Brad yrhizo bia cea e is supp orted in th e A RB tree . We us e the nam e B ra dyrhiz obiace ae to distingu is h th is
line age fro m th e fa mily Nit ro bacteraceae (B uchan an, 1917 ) whic h appe ars o n th e A pprov ed Lis ts but is pa ra phy le tic .
13 2
Mem ber of the alpha-2b subg ro up se nsu Im hoff.
13 3
13 4
Th ere is some qu est ion as t o th e legitimacy of this sp ec ies n ame as t here does n ot appe ar to be a dep osit of t he typ e s train in a p ublic
collectio n
13 5
13 6
13 7
13 8
D istant mem ber o f the alpha-2 su bgroup se nsu Im hoff. Plac eme nt within th e B ra dy rh iz obiaec ea ques tionab le.
58
Genus V. Bosea VP 139

Bosea thiooxidans VP (T) Das et al. 1996 BI 42, X81044, Bo.thiooxi | ATCC 700366 |
DSM 9653
Bosea eneae VP La Scola et al. 2003 34614, AF288300 | CCUG 43111 | CIP 106338
Bosea massiliensis VP La Scola et al. 2003 63287, AF288309 | CCUG 43117 | CIP
106336
Bosea vestrisii VP La Scola et al. 2003 34635, AF288306 | CCUG 43114 | CIP 106340
Genus VI. Nitrobacter AL
Nitrobacter winogradskyi AL (T) Winslow et al. 1917 140 ATCC 25391 | DSM 10237 |
Nb-255
Nitrobacter alkalicus VP Sorokin et al. 2001 AN1, AF069956 | LMD 97.163
Nitrobacter hamburgensis VP Bock et al. 2001 141 142 X14, L11663 | DSM 10229
Nitrobacter vulgaris VP Bock et al. 2001 143 Z | DSM 10236
Genus VII. Oligotropha VP
Oligotropha carboxidovorans VP (T) Meyer et al. 1994 OM5 | ATCC 49405 | DSM 1227
Genus VIII. Rhodoblastus VP 144
Rhodoblastus acidophilus VP (T) (Pfennig 1969) Imhoff 2001 <- Rhodopseudomonas aci-
dophila (basonym) Pfennig 7050 | ATCC 25092, M34128 | DSM 137
Genus IX. Rhodopseudomonas AL
Rhodopseudomonas palustris AL (T) (Molisch 1907) van Niel 1944 145 = Rhodopseu-
domonas rutila (junior heterotypic synonym) ATH 2.1.6 | ATCC 17001, D12700,
Rps.palus5 | ATCC 17001, D25312, Rps.palus7 | ATCC 17001, L11664, Rps.palus2
| DSM 123, L11664, Rps.palus2
Rhodopseudomonas acidophila AL Pfennig 1969 -> Rhodoblastus acidophilus ATCC

25092 | DSM 137
Rhodopseudomonas adriatica VP Neutzling et al. 1984 -> Rhodobacter adriaticum
BN 721 (6 II) | ATCC 35885, D13476, Rhv.adria2 | DSM 2781, D16418, Rhv.adriat
Rhodopseudomonas blastica VP Eckersley and Dow 1981 -> Rhodobacter blasticus
ATCC 33485, D16429, Rb.blastic | DSM 2131 | NCIB 11576, D13478, Rb.blasti2
Rhodopseudomonas capsulata AL (Molisch 1907) van Niel 1944 -> Rhodobacter cap-
sulatus ATCC 17015 | ATCC 11166, D13474, Rb.capsul3 | ATCC 11166, D16428,
Rb.capsul4 | DSM 1710 | NCIB 8254 | NCIB 8286
Rhodopseudomonas faecalis VP Zhang et al. 2002 gc | JCM 11668 | AS 1.2176,
AF123085
Rhodopseudomonas gelatinosa AL (Molisch 1907) van Niel 1944 -> Rhodocyclus
gelatinosus ATH 2.2.1, M60682, Rub.gelati | ATCC 17011, D16213, Rub.gelat2 |
DSM 1709 | LMG 4311 | NCIB 8290
Rhodopseudomonas globiformis AL Pfennig 1974 -> Rhodopila globiformis ATCC
35887 | DSM 161, D86513, Rpl.globi2
Rhodopseudomonas julia VP Kompantseva 1993 KR-11-67 | ATCC 51105 | DSM 11549,
AY428572
Rhodopseudomonas marina VP Imhoff 1984 -> Rhodobium marinum BN 126 | ATCC
35675 | DSM 2698, D30790
Rhodopseudomonas rhenobacensis VP Hougardy et al. 2000 Rb, AB087719 | 12706
Rhodopseudomonas rosea VP Janssen and Harfoot 1991 -> Rhodoplanes roseus 941,
D25313, Rhp.roseus | DSM 5909, D14429, Rhp.roseu2 | NCIMB 13363
13 9
14 0
14 1
14 2
14 3
14 4
14 5
59
Rhodopseudomonas rutila VP Akiba et al. 1983 = Rhodopseudomonas palustris (senior

heterotypic synonym) R1, D14435 | ATCC 33872
Rhodopseudomonas sphaeroides AL van Niel 1944 -> Rhodobacter sphaeroides ATH
2.4.1, X53853, Rb.sphrrnA | ATH 2.4.1, X53854, Rb.sphrrnB | ATH 2.4.1, X53855,
Rb.sphrrnC | ATCC 17023 | DSM 158 | IAM 14237 | NCIB 8253
Rhodopseudomonas sul?dophila AL Hansen and Veldkamp 1973 -> Rhodobacter sul?-
dophilus W4, D13475, Rhv.sul?2 | ATCC 35886 | DSM 1374, D16423
Rhodopseudomonas sulfoviridis AL Keppen and Gorlenko 1975 -> Blastochloris sul-
foviridis P1 | DSM 729, D86514, Bl.slfvird
Rhodopseudomonas viridis AL Drews and Giesbrecht 1966 -> Blastochloris viridis
ATCC 19567, D25314, Bl.viridi3 | DSM 133
Family IX. Hyphomicrobiaceae AL 146
Genus I. Hyphomicrobium AL (T) 147
Hyphomicrobium vulgare AL (T) Stutzer and Hartleb 1899 NCIB 8698
Hyphomicrobium aestuarii VP Hirsch 1989 ATCC 27483 | IFAM NQ-521Gr
Hyphomicrobium chloromethanicum VP McDonald et al. 2001 CM2, AF198623 |
NCIMB 13687 | VKM B-2176
Hyphomicrobium coagulans VP Hirsch 1989 Takada 10-2
Hyphomicrobium denitri?cans VP Urakami et al. 1995 TK 0415 | X | DSM 1869,
Y14308, Hyp.dnitri | NCIB 11706
Hyphomicrobium facile subsp. subspecies facile VP Hirsch 1989 ATCC 27485 | DSM
1565 | IFAM H-526, Y14309, Hyp.facile | NCIB 10342
Hyphomicrobium facile tolerans VP Hirsch 1989 ATCC 27489, Y14311, Hyp.facil3 |
IFAM I-551, Y14311, Hyp.facil3
Hyphomicrobium facile ureaphilum VP Hirsch 1989 ATCC 27492, Y14310, Hyp.facil2
| IFAM CO-582, Y14310, Hyp.facil2
Hyphomicrobium hollandicum VP Hirsch 1989 ATCC 27498 | IFAM KB-677, Y14303,

Hyp.hollnd
Hyphomicrobium indicum AL Johnson and Weisrock 1969 ATCC 19614 | DSM 5151
Hyphomicrobium methylovorum VP Iizumi et al. 1983 KM 146 | ATCC 35216 | DSM
5458, Y14307, Hyp.mvorum | NBRC 1480
Hyphomicrobium neptunium AL Leifson 1964 -> Hyphomonas neptunium ATCC
15444 | DSM 5154 | IFAM LE670, AF082798, Hym.neptun
Hyphomicrobium sulfonivorans VP Borodina et al. 2002 S1, AF235089 | ATCC BAA-
113 | DSM 13863
Hyphomicrobium zavarzinii VP Hirsch 1989 ATCC 27496 | IFAM ZV-622, Y14305,
Hyp.zavarz
Genus II. Ancalomicrobium AL
Ancalomicrobium adetum AL (T) Staley 1968 4a:2 | ATCC 23632 | DSM 4722
Genus III. Ancylobacter VP 148
Ancylobacter aquaticus VP (T) (Orskov 1928) Raj 1983 <- Microcyclus aquaticus (ba-
sonym) Orskov | ATCC 25396, M62790, Anc.aquati | CCM 1786 | DSM 101 | NCIB
9271
Ancylobacter rudongensis VP Xin et al. 2004 AS 1.1761, AY056830 | JCM 11671
Genus IV. Angulomicrobium VP
Angulomicrobium tetraedrale VP (T) Vasileva et al. 1986 Z-2821 | AUCM B-1335 | DSM
5895, AJ535708
Genus V. Aquabacter VP 149
Aquabacter spiritensis VP (T) Irgens et al. 1993 SPL-1 | ATCC 43981 | DSM 9035 | LMG
8611
Genus VI. Azorhizobium VP 150
14 6
Ludw ig in dicate s su pport for th e H yph omicrob iacea e in the ARB tree .
14 7
Mem ber of the alpha-2c sub group sensu Imho ff.
14 8
Mem ber of the alpha-2a subrou p sen su Im hoff.
14 9
15 0
60
Azorhizobium caulinodans VP (T) Dreyfus et al. 1988 LMG 6465, X67221 | ORS 571,
D11342
Genus VII. Blastochloris VP 151
Blastochloris viridis VP (T) (Drews and Giesbrecht 1966) Hiraishi 1997 <- Rhodopseu-
domonas viridis (basonym) ATCC 19567, D25314, Bl.viridi3 | DSM 133
Blastochloris sulfoviridis VP (Keppen and Gorlenko 1975) Hiraishi 1997 <- Rhodopseu-
domonas sulfoviridis (basonym) P1 | DSM 729, D86514, Bl.slfvird
Genus VIII. Devosia VP 152
Devosia ribo?avina VP (T) Nakagawa et al. 1996 Foster strain 4R | ATCC 9526 | CCEB
535 | CCM 1979 | CIP 59.10 | DSM 7230 | IAM 1093 | NBRC 13584, D49423, Dv.ri-
bo?v | LMG 2277 | NCIB 8177
Devosia neptuniae VP Rivas et al. 2003 J1, AF469072 | CECT 5650 | LMG 21357
Genus IX. Dichotomicrobium VP
Dichotomicrobium thermohalophilum VP (T) Hirsch and Hoffmann 1989 ATCC 49408 |
DSM 5002 | IFAM 954
Genus X. Filomicrobium VP
Filomicrobium fusiforme VP (T) Schlesner 1988 ATCC 35158, Y14313 | DSM 5304 |
IFAM 1315
Genus XI. Gemmiger AL
Gemmiger formicilis AL (T) Gossling and Moore 1975 X2-56 | ATCC 27749
Genus XII. Labrys VP
Labrys monachus VP (T) Vasilyeva and Semenov 1985 42 | ATCC 43932 | DSM 5896 |
VKM B-1479, AJ535707
Genus XIII. Methylorhabdus VP 153
Methylorhabdus multivorans VP (T) Doronina et al. 1998 ATCC 51890 | DM13,
AF004845, Mrh.multiv | VKM B-2030
Genus XIV. Pedomicrobium AL 154
Pedomicrobium ferrugineum AL (T) Aristovskaya 1961 emend. Gebers and Beese 1988
S-122 | ATCC 33119 | DSM 1540 | IFAM S-1290
Pedomicrobium americanum VP Gebers and Beese 1988 ATCC 43612 | IFAM G-1381
Pedomicrobium australicum VP Gebers and Beese 1988 ATCC 43611 | IFAM ST-1306,
X97693, Pdmb.austr
Pedomicrobium manganicum AL Aristovskaya 1961 ATCC 3121 | DSM 1545 | IFAM
E-1129
Genus XV. Prosthecomicrobium AL
Prosthecomicrobium pneumaticum AL (T) Staley 1968 155 ATCC 23633 | DSM 8972
Prosthecomicrobium enhydrum AL Staley 1968 ATCC 23634 | DSM 8908
Prosthecomicrobium hirschii VP Staley 1984 16 | ATCC 27832 | DSM 8907
Prosthecomicrobium litoralum VP Bould et al. 1983 524-16 | ATCC 35022
Genus XVI. Rhodomicrobium AL 156
Rhodomicrobium vannielii AL (T) Duchow and Douglas 1949 ATH 3.1.1 | ATCC 17100 |
DSM 162
Genus XVII. Rhodoplanes VP 157
Rhodoplanes roseus VP (T) (Janssen and Harfoot 1991) Hiraishi and Ueda 1994 <-
Rhodopseudomonas rosea (basonym) 941, D25313, Rhp.roseus | DSM 5909,
D14429, Rhp.roseu2 | NCIMB 13363
Rhodoplanes elegans VP Hiraishi and Ueda 1994 AS130, D25311, Rhp.elegan | JCM
9224
Genus XVIII. Seliberia AL
15 1
15 2
Distan t m emb er of the a lph a-2 sub group se nsu I mhoff .
15 3
15 4
15 5
15 6
15 7
61
Seliberia stellata AL (T) Aristovskaya and Parinkina 1963 E-37 | ATCC 700073 | INMI
N-9
Genus XIX. Starkeya VP
Starkeya novella VP (T) (Starkey 1934) Kelly et al. 2000 <- Thiobacillus novellus (ba-
sonym) ATCC 8093 | CCM 1077 | DSM 506 | IAM 12100, D32247 | NBRC 12443
| NCIB 9113
Genus XX. Xanthobacter AL 158

Xanthobacter autotrophicus AL (T) (Baumgarten et al. 1974) Wiegel et al. 1978 7C,
X94201, Xtb.autrph | ATCC 35674 | DSM 432
Xanthobacter agilis VP Jenni and Aragno 1988 SA 35, X94198, Xtb.agilis | ATCC 43847
| DSM 3770 | NEU2015
Xanthobacter aminoxidans VP Doronina and Trotsenko 2003 14a, AF399969 | ATCC

BAA-299 | VKM B-2254
Xanthobacter ?avus AL Malik and Claus 1979 301, X94199, Xtb.?avus | ATCC 35867 |
DSM 338 | NBRC 14759 | NCIB 10071
Xanthobacter tagetidis VP Padden et al. 1997 TagT2C, X99469, Xtb.tageti | DSM 11105
Xanthobacter viscosus VP Doronina and Trotsenko 2003 7d, AF399970 | ATCC BAA-
298 | VKM B-2253
Family X. MethylobacteriaceaeNP 159
Genus I. Methylobacterium AL (T)
Methylobacterium organophilum AL (T) Patt et al. 1976 XX, M29028, Mlb.organo |
ATCC 27886 | DSM 760 | IAM 12098 | JCM 2833, D32226, Mlb.organ2 | NCIB
11278
Methylobacterium aminovorans VP Urakami et al. 1993 TH-15 | JCM 8240 | NCIMB
13343
Methylobacterium chloromethanicum VP McDonald et al. 2001 CM4, AF198624 |
NCIMB 13688 | VKM B-2223
Methylobacterium dichloromethanicum VP Doronina et al. 2000 DM4, AF227128 |
DSM 6343 | VKM B-2191
Methylobacterium extorquens VP (Urakami and Komagata 1984) Bous?eld and Green
1985 <- Protomonas extorquens (basonym) TK 0001 | ATCC 43645 | CCRC 12234
| DSM 1337 | IAM 12631 | NBRC 15687 | IMET 11113 | JCM 2802, D32224, Mlb.ex-
tor4 | NCIB 9399, L20847, Mlb.extor3

Methylobacterium fujisawaense VP Green et al. 1988 0-31, AJ250801 | ATCC 43884 |
DSM 5686 | NCIB 12417
Methylobacterium lusitanum VP Doronina et al. 2002 RXM, AY009403 | DSM 14457 |
NCIMB 13779 | VKM B-2239
Methylobacterium mesophilicum VP (Austin and Goodfellow 1979) Green and Bous?eld
1983 <- Pseudomonas mesophilica (basonym) ATCC 29983 | DSM 1708 | ICPB
4095 | JCM 2829, D32225, Mlb.mesphl | NCIB 11561
Methylobacterium radiotolerans VP (Ito and Iizuka 1971) Green and Bous? eld 1983 <-
Pseudomonas radiora (basonym) ATCC 27329 | CIP 101128 | DSM 1819 | IAM
12098 | NBRC 15690 | JCM 2831, D32227, Mlb.radtol | LMG 2269 | NCIB 10815 |
NCIB 10815
Methylobacterium rhodesianum VP Green et al. 1988 Pseudomonas strain 1 | ATCC
43882 | DSM 5687 | NCIB 12249, L20850, Mlb.rhodes
Methylobacterium rhodinum VP (Heumann 1962) Green and Bous?eld 1983 <- Pseu-
domonas rhodos (basonym) ATCC 14821 | DSM 2163 | JCM 2811, D32229,
Mlb.rhodi2 | NCIB 9421, L20849, Mlb.rhodin
Methylobacterium suomiense VP Doronina et al. 2002 F20, AY009404 | DSM 14458 |
NCIMB 13778 | VKM B-2238
Methylobacterium thiocyanatum VP Wood et al. 1999 ALL/SCN-P | ATCC 700647 |
DSM 11490
15 8
15 9
Ludwig ind icate s that the A RB tree sup ports th e M ethylo bac teria ce ae .
62
Methylobacterium zatmanii VP Green et al. 1988 Pseudomonas 135 | ATCC 43883 | DSM
5688 | NCIB 12243, L20804, Mlb.zatman
Genus II. Microvirga VP
Microvirga subterranea VP (T) Kanso and Patel 2003 FaiI4 | ATCC BAA-295 | DSM
14364, AY078053
Genus III. Protomonas VP
Protomonas extorquens VP (T) Urakami and Komagata 1984 -> Methylobacterium ex-
torquens TK0001 | ATCC 43645 | DSM 1337 | IMET 11113 | JCM 2802, D32224,
Mlb.extor4 | NCIB 9399, L20847, Mlb.extor3
Genus IV. Roseomonas VP 160
Roseomonas gilardii subsp. gilardii VP (Rihs et al. 1998) emend. Han et al. 2003
ATCC BAA-691, AY150045 | MDA5605 | NCTC 13290
Roseomonas gilardii subsp. rosea VP Han et al. 2003 ATCC BAA-691, AY220740 |
MDA5605, AY220740 | NCTC 13290
Roseomonas cervicalis VP Rihs et al. 1998 E7107 | ATCC 49957, AY150047 | CIP
104027
Roseomonas fauriae VP Rihs et al. 1998 C610 | ATCC 49958, AY150046 | CIP 104028
Roseomonas mucosa VP Han et al. 2003 ATCC BAA-692, AF538712 | MDA5527,
AF538712 | NCTC 13291
Family XI. RhodobiaceaeNP
Genus I. Rhodobium VP (T) 161
Rhodobium orientis VP (T) Hiraishi et al. 1995 MB312, D30792 | DSM 11290 | JCM 9337
Rhodobium marinum VP (Imhoff 1984) Hiraishi et al. 1995 <- Rhodopseudomonas ma-
rina (basonym) Imhoff BN 126 | ATCC 35675 | DSM 2698, D30790
Genus II. Roseospirillum VP 162
Roseospirillum parvum VP (T) Glaeser and Overmann 2001 163 930I, AJ011919 | DSM
12498
Order VII. ParvularculalesNP
Family I. ParvularculaceaeNP
Genus I. Parvularcula VP (T)
Parvularcula bermudensis VP (T) Cho and Giovannoni 2003 HTCC2503, AF544015 |
ATCC BAA-594 | KCTC 12087
Class II. Betaproteobacteria NP 164
Order I. BurkholderialesNP (T)
Family I. BurkholderiaceaeNP
Genus I. Burkholderia VP (T)
Burkholderia cepacia VP (T) (Palleroni and Holmes 1981) Yabuuchi et al. 1993 <- Pseu-
domonas cepacia (basonym) Ballard 717 | ATCC 25416, M22518, Bur.cepaci |
ATCC 25416, U96927, Bur.cepac8 | CFBP 2227 | DSM 7288 | ICPB 25 | NCTC
10743
Burkholderia ambifaria VP Coenye et al. 2001 AMMD, AF043302 | CCUG 44356 |
LMG 19182
Burkholderia andropogonis VP (Smith 1911) Gillis et al. 1995 <- Pseudomonas andro-
pogonis (basonym) = Pseudomonas woodsii (heterotypic synonym) ATCC 23061,
X67037, Bur.androp | CFBP 2421 | DSM 9511 | ICMP 2807 | LMG 2129 | NCPPB 934
Burkholderia anthina VP Vandamme et al. 2002 W92B | CCUG 46047 | LMG 20980
Burkholderia caledonica VP Coenye et al. 2001 W50D | CCUG 42236 | LMG 19076,
AF215704
16 0
P eter Gree n has recom mend ed tha t Ro se omo nas b e pla ced into th e M ethy lobac teriace ae.O n the o ther hand , phy log ene tic e viden ce from
W yan t sh ows that t he type Ro se omon as gilardii and R. cervica lis be lon g in the A ce toba cte ra cea e while R. fauriae be lon gs in th e Rhod os pir-
illace ae.
16 1
16 2
Im hoff p laces elsew here, bu t is no t sp eci?c as to wh ere. I h av e mov ed it to Rhodo sp irilla cea e. O v ermann s propos al su gges ts diff erently.
16 3
16 4
Ludwig ind icate s that the Be taprot eoba cte ria are a mo noph yletic group .
63
Burkholderia caribensis VP Achouak et al. 1999 MWAP64, Y17009, Bur.caribn | LMG

18531
Burkholderia caryophylli VP (Burkholder 1942) Yabuuchi et al. 1993 <- Pseudomonas
caryophylli (basonym) PC 113 | ATCC 25418, X67039, Bur.caryph | CCEB 861 |
CFBP 2429 | DSM 50341 | ICMP 512 | LMG 2155 | NCPPB 2151 | PDDCC 512
Burkholderia cenocepacia VP Vandamme et al. 2003 ATCC BAA-245 | CCM 4899 |
LMG 16656, AF148556 | NCTC 13227.
Burkholderia cocovenenans VP (van Damme et al. 1960) Gillis et al. 1995 =
Burkholderia gladioli (senior heterotypic synonym) <- Pseudomonas cocovene-
nans (basonym) LMAU P25 | ATCC 33664 | DSM 11318 | LMG 11626, U96934,
Bur.gladi4 | NCIB 9450
Burkholderia fungorum VP Coenye et al. 2001 Croize P7632 | CCUG 31961 | LMG
16225, AF215705
Burkholderia gladioli VP (Severini 1913) Yabuuchi et al. 1993 <- Pseudomonas
gladioli (basonym) = Burkholderia cocovenenans (junior heterotypic synonym)
= Pseudomonas antimicrobica (junior heterotypic synonym) ATCC 10248,
X67038, Bur.gladi2 | CFBP 2427 | DSM 4285 | ICPB PM 107 | NBRC 13700 |
NCPPB 1891 | NRRL B-793 | PDDCC 3950
Burkholderia glathei VP (Zolg and Ottow 1975) Vandamme et al. 1997 <- Pseudomonas
glathei (basonym) N 15 | ATCC 29195, Y17052, Bur.glath1 | DSM 50014 | LMG
14190, U96935, Bur.glath2 | LMG 14190, Y17052, Bur.glath1
Burkholderia glumae VP (Kurita and Tabei 1967) Urakami et al. 1994 <- Pseudomonas
glumae (basonym) ATCC 33617 | CFBP 2430 | DSM 7169 | LMG 2196, U96931,
Bur.glumae | NCPPB 2981 | NIAES 1169
Burkholderia graminis VP Viallard et al. 1998 C4D1M, U96939, Bur.gramin | ATCC
700544
Burkholderia hospita VP Goris et al. 2003 CCUG 43658 | LMG 20598, AY040365
Burkholderia kururiensis VP Zhang et al. 2000 KP23, AB024310 | JCM 10599
Burkholderia mallei VP (Zopf 1885) Yabuuchi et al. 1993 <- Pseudomonas mallei (ba-
sonym) ATCC 23344, S55000, Bur.mallei
Burkholderia multivorans VP Vandamme et al. 1997 LMG 13010, Y18703 | NCTC
13007
Burkholderia norimbergensis VP Wittke et al. 1998 -> Pandoraea norimbergensis R2,
Y09879, Bur.norimb | CCUG 39188 | DSM 11628 | LMG 18379
Burkholderia phenazinium VP (Bell and Turner 1973) Viallard et al. 1998 <- Pseu-
domonas phenazinium (basonym) 1A | ATCC 33666 | DSM 10684 | LMG 2247,
U96936, Bur.phenaz | NCIB 11027
Burkholderia phymatum VP Vandamme et al. 2003 STM815, AJ302312 | CCUG 47179
| LMG 21445
Burkholderia pickettii VP (Ralston et al. 1973) Yabuuchi et al. 1993 <- Pseudomonas
pickettii (basonym) -> Ralstonia pickettii K-288 | ATCC 27511, S55004,
Ral.picket | CIP 73.23 | DSM 6297 | JCM 5969 | NCTC 11149
Burkholderia plantarii VP (Azegami et al. 1987) Urakami et al. 1994 <- Pseudomonas
plantarii (basonym) = Burkholderia vandii (junior heterotypic synonym) ATCC
43733 | AZ 8201 | DSM 9509 | ICMP 9424 | JCM 5492 | LMG 9035, U96933,
Bur.planta | NIAES 1723
Burkholderia pseudomallei VP (Whitmore 1913) Yabuuchi et al. 1993 <- Pseudomonas
pseudomallei (basonym) ATCC 23343 | WRAIR 286
Burkholderia pyrrocinia VP (Imanaka et al. 1965) Vandamme et al. 1997 <- Pseu-
domonas pyrrocinia (basonym) 2327 | ATCC 15958 | DSM 10685 | LMG 14191,
U96930, Bur.pyrroc
Burkholderia sacchari VP Brmer et al. 2001 IPT101, AF263278 | CCT 6771 | LMG
19450
Burkholderia solanacearum VP (Smith 1896) Yabuuchi et al. 1993 <- Pseudomonas
solanacearum (basonym) -> Ralstonia solanacearum 60-1 | ATCC 11696,
64
X67036, Ral.solan2 | CFBP 2047 | DSM 9544 | ICMP 5712 | ICPB PS 256 | NCPPB
325
Burkholderia stabilis VP Vandamme et al. 2000 LMG 14294, AF148554 | NCTC 13011
Burkholderia terricola VP Goris et al. 2003 LMG 20594, AY040362
Burkholderia thailandensis VP Brett et al. 1998 E264, U91838, Bur.thaila | ATCC
700388
Burkholderia tuberum VP Vandamme et al. 2003 STM678, AJ302311 | CCUG 47178 |
LMG 21444
Burkholderia ubonensis VP Yabuuchi et al. 2000 EY 3383
Burkholderia vandii VP Urakami et al. 1994 = Burkholderia plantarii (senior het-
erotypic synonym) VA-1316 | ATCC 51545 | DSM 9510 | JCM 7957 | LMG 16020,
U96932, Bur.plant2
Burkholderia vietnamiensis VP Gillis et al. 1995 TVV75, U96928, Bur.vietn1 | TVV75,
U96929, Bur.vietn2 | DSM 11319 | LMG 10929
Genus II. Cupriavidus VP
Cupriavidus necator VP (T) Makkar and Casida 1987 N-1 | ATCC 43291, AF191737
Genus III. Lautropia VP 165
Lautropia mirabilis VP (T) Gerner-Smidt et al. 1995 AB2188 | ATCC 51599 | DSM 11362
| NCTC 12852
Genus IV. Limnobacter VP

Limnobacter thiooxidans VP (T) Spring et al. 2001 CS-K2, AJ289885 | DSM 13612 | LMG
19593
Genus V. Pandoraea VP
Pandoraea apista VP (T) Coenye et al. 2000 CCUG 38412, AF139173 | LMG 16407
Pandoraea norimbergensis VP (Wittke et al. 1998) Coenye et al. 2000 <- Burkholderia
norimbergensis (basonym) R2, Y09879 | CCUG 39188 | LMG 18379 | DSM 11628
Pandoraea pnomenusa VP Coenye et al. 2000 CCUG 38742, AF139174 | LMG 18087
Pandoraea pulmonicola VP Coenye et al. 2000 CCUG 38759, AF139175 | LMG 18106
Pandoraea sputorum VP Coenye et al. 2000 CCUG 39682, AF139176 | LMG 18819
Genus VI. Paucimonas VP
Paucimonas lemoignei VP (Dela?eld et al. 1965) Jendrossek 2001 <- Pseudomonas
lemoignei (basonym) ATCC 17989 | DSM 7445 | LMG 2207, X92555, Ps.lemoign
Genus VII. Polynucleobacter VP
Polynucleobacter necessarius VP (T) Heckmann and Schmidt 1987 ATCC 30859,
X93019, Pnb.neces2
Genus VIII. Ralstonia VP 166
Ralstonia pickettii VP (T) (Ralston et al. 1973) Yabuuchi et al. 1996 <- Burkholderia
pickettii (basonym) K-288 | ATCC 27511, S55004, Ral.picket | CIP 73.23 | DSM
6297 | JCM 5969 | NCTC 11149
Ralstonia basilensis VP Steinle et al. 1999 -> Wautersia basilensis RK1 | DSM 11853,
AF312022
Ralstonia campinensis VP Goris et al. 2001 -> Wautersia campinensis WS2,
AF312020 | CCUG 44526 | LMG 19282
Ralstonia eutropha VP (Davis 1969) Yabuuchi et al. 1996 -> Wautersia eutropha <-
Alcaligenes eutrophus (basonym) 335 | ATCC 17697 | ATCC 17697, M32021,
Ral.eutrop | DSM 531 | IMET 10383
Ralstonia gilardii VP Coenye et al. 1999 -> Wautersia gilardii API 141-2-84 | LMG
5886, AF076645, Ral.gilard
Ralstonia insidiosa VP Coenye et al. 2003 emend. Vaneechoutte et al. 2004 AU2944 |
CCUG 46789 | LMG 21421, AF488779
Ralstonia mannitolilytica VP De Baere et al. 2001 LMG 6866, AJ270258 | NCIMB
10805
16 5
The posit ion of L autropia is in qu est ion .
16 6
Ralston ia moved back into the Burkholderiace ae based on rec om men dations from K uz uko
65
Ralstonia metallidurans VP Goris et al. 2001 -> Wautersia metallidurans CH34,

Y10824 | DSM 2839 | LMG 1195
Ralstonia oxalatica VP (ex Khambata and Bhat 1953) Sahin et al. 2000 -> Wautersia
oxalatica Ox1 | DSM 1105, AF155567 | ATCC 11883 | NCIMB 8642 | LMG 2235
Ralstonia paucula VP Vandamme et al. 1999 -> Wautersia paucula CCUG 12507 |
CDC E6793 | LMG 3244
Ralstonia respiraculi VP Coenye et al. 2003 -> Wautersia respiraculi AU3313,
AF500583 | CCUG 46809 | LMG 21510
Ralstonia solanacearum VP (Smith 1896) Yabuuchi et al. 1996 <- Burkholderia
solanacearum (basonym) 60-1 | ATCC 11696, X67036, Ral.solan2 | DSM 9544 |
ICMP 5712 | ICPB PS 256 | NCPPB 325
Ralstonia syzygii VP (Roberts et al. 1990) Vaneechoutte et al. 2004 <- Pseudomonas
syzygii (basonym) R001 | ATCC 49453, AB021403 | LMG 10661 | NCPPB 3446
Ralstonia taiwanensis VP Chen et al. 2001 -> Wautersia taiwanensis R1 | CCUG 44338
| LMG 19424, AF300324
Genus IX. Thermothrix VP

Thermothrix thiopara VP (T) Caldwell et al. 1981 ATCC 29244
Thermothrix azorensis VP Odintsova et al. 1996 TM | ATCC 51754
Genus X. Wautersia VP
Wautersia eutropha (T) (Davis 1969) Vaneechoutte et al. 2004 <- Alcaligenes eutrophus
(basonym) ATCC 17697, M32021 | CCUG 1776 | DSM 531 | LMG 1199
Wautersia basilensis (Steinle et al. 1998) Vaneechoutte et al. 2004 <- Ralstonia basilen-
sis (basonym) RK1 | DSM 11853, AF312022 | LMG 18990 | LMG 19474
Wautersia campinensis (Goris et al. 2001) Vaneechoutte et al. 2004 <- Ralstonia
campinensis (basonym) WS2, AF312020 | LMG 19282 | CCUG 44526
Wautersia gilardii (Coeyne et al. 1999) Vaneechoutte et al. 2004 <- Ralstonia gilardii
(basonym) Gilardii 4325 | ATCC 700815 | CCUG 38401 | LMG 5886, AF076645
Wautersia metallidurans (Goris et al. 2001) Vaneechoutte et al. 2004 <- Ralstonia
metallidurans (basonym) CH 34, Y10824 | CIP 107179 | DSM 2839 | LMG 1195
Wautersia oxalatica ((Khambata and Bhat 1953) Sahin et al. 2000) Vaneechoutte et al.
2004 <- Pseudomonas oxalaticus (basonym) Ox 1 | ATCC 11883 | CCUG 2086 |
DSM 1105, AF155567 | LMG 2235
Wautersia paucula (Vandamme et al. 1999) Vaneechoutte et al. 2004 <- Ralstonia
paucula (basonym) ATCC 700817, AF085226 | CCUG 12507 | LMG 3244
Wautersia respiraculi (Coeyne et al. 2003) Vaneechoutte et al. 2004 <- Ralstonia res-
piraculi (basonym) AU3313, AF500583 | CCUG 46809 | LMG 21510
Wautersia taiwanensis (Chen et al. 2001) Vaneechoutte et al. 2004 <- Ralstonia taiwa-
nensis (basonym) R1 | CCUG 44338 | LMG 19424, AF300324 |
Family II. OxalobacteraceaeNP
Genus I. Oxalobacter VP (T)
Oxalobacter formigenes VP (T) Allison et al. 1985 OxB, U49757, Oxa.formi2 | ATCC
35274
Oxalobacter vibrioformis VP Dehning and Schink 1990 WoOx3 | DSM 5502
Genus II. Duganella VP
Duganella zoogloeoides VP (T) Hiraishi et al. 1997 OSU 115 | ATCC 25935 | IAM 12670,
D14256, Dg.zooglo3
Genus III. Herbaspirillum VP
Herbaspirillum seropedicae VP (T) Baldani et al. 1986 emend. Baldani et al. 1996 Z67 |
ATCC 35892 | DSM 6445, Y10146, Hs.serpedi | NCIB 12540, Y10146, Hs.serpedi
Herbaspirillum frisingense VP Kirchhof et al. 2001 167 GSF30, AJ238358 | DSM 13128
Herbaspirillum lusitanum VP Valverde et al. 2003 P6-12, AF543312 | CECT 5661 | LMG
21710 | ,
16 7
66
Herbaspirillum rubrisubalbicans VP (Christopher and Edgerton 1930) Baldani et al.

1996 <- Pseudomonas rubrisubalbicans (basonym) ATCC 19308, AB021424 |
CFBP 1202 | DSM 9440 | ICMP 5777 | LMG 2286 | NCPPB 1027
Genus IV. Janthinobacterium AL
Janthinobacterium lividum AL (T) De Ley et al. 1978 H-24 | ATCC 12473 | CCM 160 |
DSM 1522, Y08846, Jb.lividum | NCIB 9130 | NCTC 9796
Janthinobacterium agaricidamnosum VP Lincoln et al. 1999 W1r3, Y08845 | DSM 9628
| NCPPB 3945
Genus V. Massilia VP
Massilia timonae VP (T) La Scola et al. 2000 UR/MT95, U54470 | CIP 105350
Genus VI. Oxalicibacterium VP
Oxalicibacterium ?avum VP (T) Tamer et al. 2003 NEU 98 | TA17, AY061962 | CCM
7086 | CIP 107889 | KUEN 1580 | LMG 21571
Genus VII. Telluria VP
Telluria mixta VP (T) (Bowman et al. 1989) Bowman et al. 1993 <- Pseudomonas mixta
(basonym) ACM 1762, X65589, Tlr.mixta | ATCC 49108 | DSM 4832 | UQM 1762
Telluria chitinolytica VP Bowman et al. 1993 20M | ACM 3522 | CNCM I-804
Family III. Alcaligenaceae VP
Genus I. Alcaligenes AL (T)
Alcaligenes faecalis subsp. faecalis AL (T) Castellani and Chalmers 1919 16 | ATCC
8750, M22508, Alc.faecal | CCM 1052 | CIP 60.80 | DSM 30030 | DSM 61 | NBRC
13111 | IMET 10443 | NCDO 868 | NCIB 8156
Alcaligenes aestus AL Baumann et al. 1972 -> Deleya aesta ATCC 27128 | DSM 30161
Alcaligenes aquamarinus AL (ZoBell and Upham 1944) Hendrie et al. 1974 -> Deleya
aquamarina ATCC 14400, M93352, Hlm.aqmari | DSM 30161 | NCMB 557
Alcaligenes cupidus AL Baumann et al. 1972 -> Deleya cupida 79 | ATCC 27124 | DSM
4740, L42615, Hlm.cupida
Alcaligenes defragrans VP Foss et al. 1998 54Pin, AJ005447, Alc.defrag | DSM 12141
Alcaligenes denitri?cans VP (ex Leifson and Hugh 1954) Rger and Tan 1983 -> Achro-
mobacter xylosoxidans subsp. denitri?cans -> Achromobacter denitri?cans 12 |
55B | ATCC 15173, M22509, Amo.xylden | CIP 7715 | DSM 30026 | NCTC 8582
Alcaligenes eutrophus AL Davis 1969 -> Ralstonia eutropha 335 | ATCC 17697 | DSM
531 | IMET 10383
Alcaligenes faecalis subsp. homari VP Austin et al. 1981 = Deleya aquamarina (senior
heterotypic synonym) L1 | ATCC 33127 | NCMB 2116
Alcaligenes faecalis subsp. parafaecalis VP Schroll et al. 2001 G, AJ242986 | CIP
106866 | DSM 13975
Alcaligenes latus AL Palleroni and Palleroni 1978 H-4 | ATCC 29712 | DSM 1122 | IAM
12599, D88007, Alc.latus1
Alcaligenes paci?cus AL Baumann et al. 1972 -> Deleya paci?ca 62 | ATCC 27122 |
DSM 4742, L42616, Hlm.pacfca
Alcaligenes paradoxus AL Davis 1969 -> Variovorax paradoxus 351 | B13-0-1 D |
ATCC 17713 | DSM 30034 | DSM 66, AJ420329 | NBRC 15149 | LGM 11797t2 |
LGM 1797t1
Alcaligenes piechaudii VP Kiredjian et al. 1986 -> Achromobacter piechaudii 366-5
| Hugh 366-5 | ATCC 43552 | CIP 60.75 | DSM 10342 | EY3680, AB010841 | IAM
12591 | LMG 1873

Alcaligenes ruhlandii VP (Packer and Vishniac 1955) Aragno and Schlegel 1977 ->
Achromobacter ruhlandii ATCC 15749 | DSM 653 | EY3918 , AB010840
Alcaligenes venustus AL Baumann et al. 1972 -> Deleya venusta ATCC 27125 | DSM
4743, L42618, Hlm.venust
Alcaligenes xylosoxidans VP (Yabuuchi and Yano 1981) Kiredjian et al. 1986 -> Achro-
mobacter xylosoxidans subsp. xylosoxidans KM 543 | ATCC 27061 | CIP 71.32 |
NBRC 15126 | NCTC 10807
Genus II. Achromobacter VP
67
Achromobacter xylosoxidans subsp. xylosoxidans VP (T) (ex Yabuuchi and Ohyama 1971)
Yabuuchi and Yano 1981 emend. Yabuuchi et al. 1998 <- Alcaligenes xylosoxidans
(basonym) KM 543 | ATCC 27061, AJ131590 | CIP 71.32 | NBRC 15126 | NCTC
10807
Achromobacter xylosoxidans subsp. denitri?cans VP (Rger and Tan 1983) Yabuuchi et
al. 1998 <- Alcaligenes denitri?cans (basonym) ATCC 15173 | CIP 77.15 | LMG
1231 | NCTC 8582
Achromobacter denitri?cans VP (Rger and Tan 1983) Coenye et al. 2003 <- Alcaligenes
denitri?cans (basonym) LMG 1231, M22509
Achromobacter insolitus VP Coenye et al. 2003 API 201-3-84 | CCUG 47057 | LMG
6003, AY170847
Achromobacter piechaudii VP (Kiredjian et al. 1986) Yabuuchi et al. 1998 <- Alcali-
genes piechaudii (basonym) 366-5 | Hugh 366-5 | ATCC 43552 | CIP 60.75 | DSM
10342 | EY3680, AB010841, AB010841 | IAM 12591 | LMG 1873
Achromobacter ruhlandii VP (Packer and Vishniac 1955) Yabuuchi et al. 1998 <- Al-
caligenes ruhlandii (basonym) ATCC 15749 | DSM 653 | EY3918 , AB010840,
AB010840
Achromobacter spanius VP Coenye et al. 2003 API 198-2-84 | CCUG 47062 | LMG 5911,
AY170848
Genus III. Bordetella AL
Bordetella pertussis AL (T) (Bergey et al. 1923) Moreno-Lopez 1952 ATCC 9797,
U04950, Brd.pertus | DSM 5571
Bordetella avium VP Kersters et al. 1984 Hinz 591-77 | ATCC 35086, U04947,
Brd.avium | CCUG 13726 | DSM 11332 | LMG 1852
Bordetella bronchiseptica AL (Ferry 1912) Moreno-Lopez 1952 ATCC 19395, U04948,
Brd.bronc2 | NCTC 452
Bordetella hinzii VP Vandamme et al. 1995 TC58 | ATCC 51783 | CIP 104527 | DSM
11333 | LMG 13501, AF177667
Bordetella holmesii VP Weyant et al. 1995 ATCC 51541 | CDC F5101, U04820,
Brd.holmes
Bordetella parapertussis AL (Eldering and Kendrick 1938) Moreno-Lopez 1952 ATCC
15311, U04949, Brd.pperts | NCTC 5952
Bordetella petrii VP von Wintzingerode et al. 2001 Se-1111R, AJ249861 | CCUG 43448
| DSM 12804
Bordetella trematum VP Vandamme et al. 1996 1779 | CCUG 32381 | DSM 11334,
AJ277798 | LMG 13506
Genus IV. Brackiella VP
Brackiella oedipodis VP (T) Willems et al. 2002 LMG 19451, AJ277742 | DSM 13743 |
NCIMB 13739
Genus V. Derxia AL 168
Derxia gummosa AL (T) Jensen et al. 1960 ATCC 15994 | DSM 723 | NCIB 9064
Genus VI. Kerstersia VP
Kerstersia gyiorum VP (T) Coenye et al. 2003 API 184-2-84 | CCUG 47000 | LMG 5906,
AY131213
Genus VII. Oligella VP 169
Oligella urethralis VP (T) (Lautrop et al. 1970) Rossau et al. 1987 <- Moraxella urethralis
(basonym) MC213 | ATCC 17960, AF227163 | CCUG 13463 | CDC 7603 | DSM
7531 | LMG 5303, AF133538
Oligella ureolytica VP Rossau et al. 1987 ATCC 43534, AJ247261 | CCUG 1465 | CDC
C379 | LMG 6519
Genus VIII. Pelistega VP
Pelistega europaea VP (T) Vandamme et al. 1998 N57 | LMG 10982, Y11890, Pls.europa
16 8
P hylo gene tic da ta h ave bee n comm unica ted to th e Tru st ind ic ating t hat Derxia is misplac ed in the outline . Hu i and Ak ira p re se nted data
at the 20 th Ann ual Co nference on Ba cte rial Taxono my in J ap an that the c los es t re lat iv e is A ch ro moba cte r an d s ugg es t m emb ership in the
A lcaliginaceae
16 9
Kersters recomm end s pla ce ment in the Alca ligena cea e.
68
Genus IX. Pigmentiphaga VP

Pigmentiphaga kullae VP (T) Blmel et al. 2001 K24, AF282916 | DSM 13608 | NCIMB
13708
Genus X. Sutterella VP
Sutterella wadsworthensis VP (T) Wexler et al. 1996 WAL 9799 | ATCC 51579
Genus XI. Taylorella VP
Taylorella equigenitalis VP (T) (Taylor et al. 1983) Sugimoto et al. 1984 <- Haemophilus
equigenitalis (basonym) 61717/77 | CIP 7909 | DSM 10668 | NCTC 11184, X68645,
Tay.eqgeni
Taylorella asinigenitalis VP Jang et al. 2001 UCD-1, AF067729 | ATCC 700933 | LMG
19572
Family IV. Comamonadaceae VP
Genus I. Comamonas VP (T)
Comamonas terrigena VP (T) (Hugh 1962) DeVos et al. 1985 = Aquaspirillum aquaticum
(junior heterotypic synonym) Hugh 247 | V 31 | IMI 359870 | ATCC 8461 | CCUG
15327 | CCUG 2185 | CIP 63.44 | DSM 7099 | IMET 10768, AF078772, Com.terrig
| LMG 5929 | NCIB 8193 | NCTC 1937 | NRRL B-1055
Comamonas acidovorans VP (den Dooren de Jong 1926) Tamaoka et al. 1987 <- Pseu-
domonas acidovorans (basonym) -> Delftia acidovorans KS 0057 | ATCC 15668
| DSM 39 | DSM 50251 | IAM 12409, AB021417 | IMET 10620 | JCM 5833 | NCIB
9681
Comamonas aquatica VP (Hylemon et al. 1973) Wauters et al. 2003 <- Aquaspirillum
aquaticum (basonym) ATCC 11330 | CCUG 15845 | LMG 2370, AJ430344
Comamonas denitri?cans VP Gumaelius et al. 2001 170 123, AF233877 | ATCC 700936
Comamonas kerstersii VP Wauters et al. 2003 AF61 | CCUG 15333 | LMG 3475,
AJ430347
Comamonas koreensis VP Chang et al. 2002 171 YH-12, AF275377 | IMSNU 11158 |
KCTC 12005
Comamonas nitrativorans VP Etchebehere et al. 2001 23310, AJ251577 | CCT 7062 |
DSM 13191 | NCCB 100007
Comamonas testosteroni VP (Marcus and Talalay 1956) Tamaoka et al. 1987 <- Pseu-
domonas testosteroni (basonym) KS 0043 | ATCC 11996, M11224, Com.testos |
DSM 50244 | IAM 12419 | ICPB 2741-78 | JCM 5832 | NCIB 8955
Genus II. Acidovorax VP
Acidovorax facilis VP (T) (Schatz and Bovell 1952) Willems et al. 1990 <- Pseudomonas
facilis (basonym) ATCC 11228 | CCUG 2113, AF078765, Av.facilis | DSM 649 |
LMG 2193
Acidovorax anthurii VP Gardan et al. 2000 CFBP 3232, AJ007013
Acidovorax avenae subsp. avenae VP (Manns 1909) Willems et al. 1992 <- Pseu-
domonas avenae subsp. avenae (basonym) = Pseudomonas rubrilineans (junior
heterotypic synonym) ATCC 19860, AF078759, Av.avenave | CCUG 15838 |
CFPB 2425 | ICMP 3138 | ICPB PA117 | LMG 2117 | NCPPB 1011
Acidovorax avenae subsp. cattleyae VP (Pavarino 1911) Willems et al. 1992 <- Pseu-
domonas cattleyae (basonym) DFBP 2423 | ATCC 33619 | CCUG 21975 | ICMP
2826 | LMG 2364 | LMG 5286 | NCPPB 961, AF078762, Av.avencat
Acidovorax avenae subsp. citrulli VP (Schaad et al. 1978) Willems et al. 1992 <- Pseu-
domonas avenae subsp. citrulli (basonym) ATCC 29625, AF078761, Av.avencit
| CCUG 17393 | ICMP 7500 | LMG 5376 | NCPPB 3679
Acidovorax de?uvii VP Schulze et al. 1999 BSB411, Y18616 | DSM 12644

17 0
17 1
69
Acidovorax dela?eldii VP (Davis 1970) Willems et al. 1990 <- Pseudomonas dela?eldii
(basonym) 133 | FD-6 | ATCC 17505, AF078764, Av.del?di | CCUG 1779 | DSM
64 | LMG 5943
Acidovorax konjaci VP (Goto 1983) Willems et al. 1992 <- Pseudomonas avenae subsp.
konjaci (basonym) K2 | ATCC 33996, AF078760, Av.konjaci | DSM 7481 | ICMP
7733 | LMG 5691 | PDDCC 7733
Acidovorax temperans VP Willems et al. 1990 CCUG 11779, AF078766, Av.tempran |
DSM 7270 | LMG 7169
Acidovorax valerianellae VP Gardan et al. 2003 CFBP 4730, AJ431731 | NCPPB 4283
Genus III. Alicycliphilus VP
Alicycliphilus denitri?cans VP (T) Mechichi et al. 2003 K601, AJ418042 | CIP 107495 |
DSMZ 14773
Genus IV. Brachymonas VP
Brachymonas denitri?cans VP Hiraishi et al. 1995 AS-P1, D14320, Brch.denit | JCM
9216
Genus V. Caldimonas VP
Caldimonas manganoxidans VP (T) Takeda et al. 2002 HS | ATCC BAA-369 | NBRC
16448 | JCM 10698, AB008801
Genus VI. Delftia VP
Delftia acidovorans VP (T) (den Dooren de Jong 1926) Wen et al. 1999 <- Comamonas
acidovorans (basonym) ACM 489, AF078774, Df.acvoran | ATCC 15668 | DSM
39 | IAM 12409, AB021417 | JCM 5833
Genus VII. Diaphorobacter VP
Diaphorobacter nitroreducens VP (T) Khan and Hiraishi 2003 NA10B, AB064317 | CIP
107294 | JCM 11421
Genus VIII. Hydrogenophaga VP
Hydrogenophaga ?ava VP (T) (Niklewski 1910) Willems et al. 1989 <- Pseudomonas
?ava (basonym) ATCC 33667 | CCUG 1658, AF078771, Hgp.? ava1 | DSM 619 |
LMG 2185
Hydrogenophaga intermedia VP Contzen et al. 2001 172 S1, AF019037 | DSM 5680
Hydrogenophaga palleronii VP (Davis et al. 1970) Willems et al. 1989 <- Pseudomonas
palleronii (basonym) Stanier 362t1 | ATCC 17724 | CCUG 20334, AF078769,
Hgp.palle2 | DSM 63, AF019073, Hgp.paller | LMG 2366
Hydrogenophaga pseudo?ava VP (Auling et al. 1978) Willems et al. 1989 <- Pseu-
domonas pseudo?ava (basonym) GA3 | ATCC 33668, AF078770, Hgp.ps?av |
CCUG 13799 | DSM 1034 | LMG 5945
Hydrogenophaga taeniospiralis VP (Lalucat et al. 1982) Willems et al. 1989 <- Pseu-
domonas taeniospiralis (basonym) 2K1 | ATCC 49743, AF078768, Hgp.taensp |
CCUG 15921 | DSM 2082 | LMG 7170
Genus IX. Hylemonella VP
Hylemonella gracilis VP (T) (Canale-Parola et al. 1966) Spring et al. 2004 <- Aquaspiril-
lum gracile (basonym) ATCC 19624, AF078753 | DSM 9158 | NBRC 14920 | LMG
8201 | VKM B-1405
Genus X. Lampropedia AL
Lampropedia hyalina AL (T) (Ehrenberg 1832) Schroeter 1886 ATCC 11041 173
Genus XI. Macromonas AL 174
Macromonas mobilis AL (T) (Lauterborn 1915) Utermohl and Koppe 1924
Macromonas bipunctata VP Dubinina and Grabovich 1989 DSM 12705 | VKM 1366
Genus XII. Ottowia VP
17 2
17 3
Hui an d A kira presente d dat a at the 2 0th A nnu al C onfe re nce on B ac teria l Tax ono my in Ja pan indic atin g th at La mprope dia sh ould be
mo ve d to the Com amo nada ce ae
17 4
In their trea tmen t in Vo l 2 o f B ergeys M anua l of Syste matic B act eriology, Se con d E d., Dub inina et al. ind ic ate tha t M acrom ona s bip unc tata
is more closely rela ted to Hyd ro geno phila (Com amon adacea e) rathe r tha n m emb ers of the Thiotric hac ea e. Howe ve r, p lac em ent of the ge nus
is dif?cult as th e type ma terial consists o f a description ra ther than a viable s pec imen.
70
Ottowia thiooxydans VP (T) Spring et al. 2004 K11, AJ537466 | DSM 14619 | JCM 11629
Genus XIII. Polaromonas VP
Polaromonas vacuolata VP (T) Irgens et al. 1996 34-P, U14585, Po.vacuola | ATCC
51984
Polaromonas naphthalenivorans VP Jeon et al. 2004 CJ2, AY166684 | ATCC BAA-779
| DSM 15660
Genus XIV. Ramlibacter VP

Ramlibacter tataouinensis VP (T) Heulin et al. 2003 TTB310, AF144383 | ATCC BAA-
407 | DSM 14655 | LMG 21543
Ramlibacter henchirensis VP Heulin et al. 2003 TMB834, AF439400 | ATCC BAA-408
| DSM 14656 | LMG 21542
Genus XV. Rhodoferax VP

Rhodoferax fermentans VP (T) Hiraishi et al. 1992 FR2, D16211, Rhf.ferme2 | ATCC
49787 | DSM 10138 | JCM 7819
Rhodoferax antarcticus VP Madigan et al. 2001 175 ANT.BR, AF084947 | ATCC 700587
Rhodoferax ferrireducens VP Finneran et al. 2003 ATCC BAA-621 | DSM 15236 | T118,
AF435948
Genus XVI. Variovorax VP
Variovorax paradoxus VP (T) (Davis 1969) Willems et al. 1991 <- Alcaligenes paradoxus
(basonym) 351 | ATCC 17713 | DSM 30034 | DSM 66, AJ420329 | ICPB 3985 |
NBRC 15149 | LMG 1797t1 | LMG 1797t2
Genus XVII. Xenophilus VP
Xenophilus azovorans VP (T) Blmel et al. 2001 KF46F, AF285414 | DSM 13620 |
NCIMB 13707
Genera incertae sedis Incertae sedis 176
Genus I. Aquabacterium VP
Aquabacterium commune VP (T) Kalmbach et al. 1999 B8, AF035054, Aqa.commun |
DSM 11901
Aquabacterium citratiphilum VP Kalmbach et al. 1999 B4, AF035050, Aqa.citrph |
DSM 11900
Aquabacterium parvum VP Kalmbach et al. 1999 B6, AF035052, Aqa.parvum | DSM
11968
Genus II. Ideonella VP
Ideonella dechloratans VP (T) Malmqvist et al. 1994 Anox B, X72724, Id.dechlrt | ATCC
51718 | CCUG 30898 | CCUG 30977
Genus III. Leptothrix AL
Leptothrix ochracea AL (T) (Roth 1797) Ktzing 1843
Leptothrix cholodnii AL Mulder and van Veen 1963 LVMW 99
Leptothrix discophora VP Spring et al. 1997 SS-1, L33975, Lptx.disc3 | SS-1, Z18533,
Lptx.disco | ATCC 43182 | CCM 2812 | LMG 8141
Leptothrix lopholea AL Dorff 1934 LVMW 124
Leptothrix mobilis VP Spring et al. 1997 Feox-1, X97071, Lptx.mobil | DSM 10617 |
LMG 17066
Genus IV. Roseateles VP
Roseateles depolymerans VP (T) Suyama et al. 1999 61A, AB003624, Rst.dpoly2 |
61A, AB003623, Rst.dpolym | DSM 11813, AB003624, Rst.dpoly2 | DSM 11813,
AB003623, Rst.dpolym
Genus V. Rubrivivax VP
Rubrivivax gelatinosus VP (T) (Molisch 1907) Willems et al. 1991 <- Rhodocyclus
gelatinosus (basonym) ATH 2.2.1, M60682, Rub.gelati | ATCC 17011, D16213,
Rub.gelat2 | DSM 1709 | LMG 4311 | NCIB 8290
17 5
17 6
Althou gh closely aligne d w ith the Co mam onad ace a, Willems has rec om mend ed that A quab ac terium , Ideon ella, Le ptoth rix, Ro sea teles ,
Rub rivivax, S phae ro tilus, Tepidimona s, and Thio mon as be exc luded from the family. Thes e g enera co ns is tently clus ter in a se parate group
within p hylog enetic tree s gene ra ted by m ultiple met hods.
71
Genus VI. Schlegelella VP

Schlegelella thermodepolymerans VP (T) Elbanna et al. 2003 K14, AY152824 | DSM
15344 | LMG 21644
Genus VII. Sphaerotilus AL
Sphaerotilus natans AL (T) Ktzing 1833 6 | ATCC 13338 | DSM 6575
Genus VIII. Tepidimonas VP
Tepidimonas ignava VP (T) Moreira et al. 2000 SPS-1037, AF177943 | DSM 12034
Tepidimonas aquatica VP Freitas et al. 2003 ATCC BAA-469 | CLN-1, AY324139 | DSM
14833
Genus IX. Thiomonas VP
Thiomonas intermedia VP (T) (London 1963) Moreira and Amils 1997 <- Thiobacillus
intermedius (basonym) ATCC 15466, AY455809
Thiomonas cuprina VP (Huber and Stetter) Moreira and Amils 1997 H5 | DSM 5495,
U67162, Tmn.cuprin
Thiomonas perometabolis VP (London and Rittenberg 1967 emend. Katayama-Fujimura
and Kuraishi 1983) Moreira <- Thiobacillus perometabolis (basonym) ATCC
23370
Thiomonas thermosulfata VP Shooner et al. 1996) Moreira and Amils 1997 <- Thiobacil-
lus thermosulfatus (basonym) ATCC 51520, U27839, Tmn.thsulf
Genus X. Xylophilus VP 177
Xylophilus ampelinus VP (T) (Panagopoulos 1969) Willems et al. 1987 <- Xanthomonas
ampelina (basonym) ATCC 33914, AF078758, Xp.ampelin | CNPB 1192 | DSM
7250, AJ420330 | LMG 5856 | LMG 5856 | NCPPB 2217 | PDDCC 4298
Order II. HydrogenophilalesNP 178
Family I. HydrogenophilaceaeNP
Genus I. Hydrogenophilus VP (T)
Hydrogenophilus thermoluteolus VP (T) Hayashi et al. 1999 TH-1, AB009828,
AB009828, Hgh.thlute | NBRC 14978
Hydrogenophilus hirschii VP Sthr et al. 2001 Yel5a, AJ131694 | DSM 11420 | JCM
10831
Genus II. Thiobacillus AL 179
Thiobacillus thioparus AL (T) Beijerinck 1904 ATCC 8158, M79426, Thb.thiopa | CIP
104484 | DSM 505 | NCIB 8370
Thiobacillus acidophilus VP Harrison 1983 -> Acidiphilium acidophilum TM | ATCC
27807, D86511, Acdp.acphl | CIP 104483 | DSM 700
Thiobacillus albertis VP Bryant et al. 1988 -> Acidithiobacillus albertensis ATCC
35403 | DSM 14366 , AJ459804
Thiobacillus aquaesulis VP Wood and Kelly 1995 ATCC 43788 | DSM 4255
Thiobacillus caldus VP Hallberg and Lindstrm 1995 -> Acidithiobacillus caldus KU
| ATCC 51756 | DSM 8584, Z29975, Thb.caldus
Thiobacillus concretivorus AL Parker 1945 = Thiobacillus thiooxidans (senior het-

erotypic synonym) NCIB 8345
Thiobacillus delicatus VP Katayama-Fujimura et al. 1984 THI 091 | IAM 12624
Thiobacillus denitri?cans VP Kelly and Harrison 1989 ATCC 23644, AJ243144 | DSM
12475 | JCM 3870 | NCIB 8327 | NCIMB 9548
Thiobacillus ferrooxidans AL Temple and Colmer 1951 -> Acidithiobacillus ferroox-
idans ATCC 23270, M79404 | ATCC 23270, M79405 | ATCC 23270, M79406 |
NCIB 8455
Thiobacillus halophilus VP Wood and Kelly 1995 -> Halothiobacillus halophilus
ATCC 49870, U58020 | DSM 6132
Thiobacillus hydrothermalis VP Durand et al. 1997 -> Halothiobacillus hydrothermalis
R3, M90662, Thb.hyther | ATCC 51453 | DSM 7121
17 7
Willems n otes t hat Xylo philus w as misp laced in th e P seudo mona dac eae
17 8
L udwig indica tes tha t the Hydrogen ophila les represen ts the d eepe st branc hing g ro up w ithin th e B etap ro teob act eria .
17 9
P la ce ment of Thioba cillus is ba sed on a recomm enda tion of L udwig. P CA plo ts sho w Thiobac illu s t o be quite dis tinc t b as ed on 16S .
72
Thiobacillus intermedius AL London 1963 -> Thiomonas intermedia ATCC 15466,

AY455809
Thiobacillus neapolitanus AL Parker 1957 -> Halothiobacillus neapolitanus DSM 581
| NCIB 8539, M79399 | NCIB 8539, M79419 | NCIB 8539, M79420
Thiobacillus novellus AL Starkey 1934 -> Starkeya novella ATCC 8093 | CCM 1077 |
DSM 506 | IAM 12100, D32247 | NBRC 12443 | NCIB 9113
Thiobacillus perometabolis AL London and Rittenberg 1967 emend. Katayama-Fu-
jimura and Kuraishi 1983 -> Thiomonas perometabolis ATCC 23370
Thiobacillus rapidicrescens VP Katayama-Fujimura et al. 1983 = Thiobacillus versu-
tus (senior heterotypic synonym) A2 | THI O41 | ATCC 25364 | CCM 2505 | IAM
12814, D32243, Par.versu2
Thiobacillus tepidarius VP Wood and Kelly 1985 -> Thermithiobacillus tepidarius
ATCC 43215, M79424 | ATCC 43215, M79425 | DSM 3134
Thiobacillus thermosulfatus VP Shooner et al. 1996 -> Thiomonas thermosulfata
ATCC 51520, U27839, Tmn.thsulf
Thiobacillus thiooxidans AL Waksman and Joffe 1922 = Thiobacillus concretivorus
(junior heterotypic synonym) -> Acidithiobacillus thiooxidans ATCC 19377,
M79396 | ATCC 19377, M79397 | ATCC 19377, M79398 | ATCC 19377, M79401 |
NCIMB 8343
Thiobacillus thyasiris VP Wood and Kelly 1995 -> Thiomicrospira thyasirae TG2 |
ATCC 51452 | DSM 5322, AF016046
Thiobacillus versutus VP Harrison 1983 = Thiobacillus rapidicrescens (junior het-
erotypic synonym) -> Paracoccus versutus A2 | ATCC 25364 | CCM 2505 | DSM
582 | IAM 12814, D32243, Par.versu2
Order III. MethylophilalesNP
Family I. MethylophilaceaeNP
Genus I. Methylophilus VP (T)
Methylophilus methylotrophus VP (T) Jenkins et al. 1987 AS1, M29021, Mlp.methyl
| ATCC 53528 | ATCC 53528, L15475, Mlp.methy1 | DSM 46235 | IMET 10786 |
NCIB 10515
Methylophilus leisingeri VP Doronina and Trotsenko 2001 180 DM11, AF250333 | DSM
6813 | VKM B-2013
Genus II. Methylobacillus AL
Methylobacillus glycogenes AL (T) Yordy and Weaver 1977 emend. Urakami and Koma-
gata 1986 T-11, M95652, Mbs.glycog | ATCC 29475 | DSM 46232 | DSM 5685 |
IMET 10774 | JCM 2850 | NCIB 11375
Methylobacillus ?agellatus VP Govorukhina et al. 1998 KT, M95651, Mbs.?agel |
ATCC 51484 | DSM 6875 | VKM B-161
Genus III. Methylovorus VP
Methylovorus glucosotrophus VP (T) Govorukhina and Trotsenko 1991 6B1 | UCM
B-1475
Methylovorus mays VP Doronina et al. 2001 181 BV | VKM B-2221
Order IV. NeisserialesNP
Family I. Neisseriaceae AL
Genus I. Neisseria AL (T)
Neisseria gonorrhoeae AL (T) (Zopf 1885) Trevisan 1885 B 5025 | ATCC 19424 | DSM
9188 | NCTC 8375, X07714, Nis.gonor1
Neisseria animalis AL Berger 1960 NCTC 10212, AJ239288
Neisseria canis AL Berger 1962 H 6 | ATCC 14687, L06170, Nis.canis
Neisseria caviae AL Pelczar 1953 = Moraxella caviae (homotypic synonym) GP 11 |
ATCC 14659 | CCUG 2132 | CCUG 355, AF005187 | NCTC 10293
18 0
18 1
73
Neisseria cinerea AL (von Lingelsheim 1906) Murray 1939 ATCC 14685 | DSM 4630 |
NCTC 10294
Neisseria cuniculi AL Berger 1962 -> Moraxella cuniculi ATCC 14688
Neisseria denitri?cans AL Berger 1962 ATCC 14686, L06173, Nis.denit2 | ATCC 14686,
M35020, Nis.dentri
Neisseria dentiae VP Sneath and Barrett 1997 Dent SHI/3848 | V33, AF487709 | ATCC
70027
Neisseria elongata subsp. elongata AL Bovre and Holten 1970 ATCC 25295, L06171,
Nis.elong2
Neisseria elongata subsp. glycolytica AL Henriksen and Holten 1976 ATCC 29315
Neisseria elongata subsp. nitroreducens VP Grant et al. 1991 B1019 | ATCC 49377,
AJ247254
Neisseria ?ava AL Bergey et al. 1923 NRL 30,008
Neisseria ?avescens AL Branham 1930 ATCC 13120, L06168, Nis.? aves
Neisseria iguanae VP Barrett et al. 1994 ATCC 51483 | NVSL 85737
Neisseria lactamica AL Hollis et al. 1969 ATCC 23970 | DSM 4691 | NCDC A7515 |
NCTC 10617, AJ239286
Neisseria macacae VP Vedros et al. 1983 M-740 | ATCC 33926, L06169, Nis.macaca
Neisseria meningitidis AL (Albrecht and Ghon 1901) Murray 1929 M1027 | ATCC 13077
| DSM 10036 | NCTC 10025
Neisseria mucosa AL Veron et al. 1959 ATCC 19696 | ATCC 25996 | DSM 4631 | NCTC
10774
Neisseria ovis AL Lindqvist 1960 = Moraxella ovis (homotypic synonym) ATCC 33078,
AF005186
Neisseria per?ava AL Bergey et al. 1923 ATCC 10555
Neisseria polysaccharea VP Riou and Guibourdenche 1987 ATCC 43768, L06167,
Nis.polsac | CIP 100113 | LNP N462 | NCTC 11858 | NGC 11858
Neisseria sicca AL (von Lingelsheim 1908) Bergey et al. 1923 NRL 30,016
Neisseria sub?ava AL (Flgge 1886) Trevisan 1889 NRL 30,017
Neisseria weaveri VP Holmes et al. 1993 ATCC 51223 | CCUG 4007 | CDC 8142,
L10738, Nis.weaver | ISL775/91 | LMG 5135 | NCTC 12742
Genus II. Alysiella AL
Alysiella ?liformis AL (T) (Schmid 1922) Langeron 1923 A1 | ATCC 15532, AF487710 |
NCTC 10282
Genus III. Aquaspirillum AL 182
Aquaspirillum serpens subsp. serpens AL (T) (Mller 1786) Hylemon et al. 1973 emend.
Boivin et al. 1985 183 = Aquaspirillum bengal (junior heterotypic synonym) ATCC
12638 | DSM 68
Aquaspirillum serpens subsp. bengal NP Kumar et al. 1974 <- Aquaspirillum bengal
(basonym) ATCC 27641
Aquaspirillum anulus AL (Williams and Rittenberg 1957) Hylemon et al. 1973 ATCC
35958 | NCIB 9012 | NRRL B-2067
Aquaspirillum aquaticum AL Hylemon et al. 1973 = Comamonas terrigena (senior
heterotypic synonym) -> Comamonas aquatica ATCC 11330 | CCUG 17395 | DSM
9155 | LMG 2370
Aquaspirillum arcticum VP Butler et al. 1990 Res-10 | ATCC 49402 | DSM 6444
Aquaspirillum autotrophicum AL Aragno and Schlegel 1978 SA 32 | ATCC 29984 | DSM
732
Aquaspirillum delicatum AL (Leifson 1962) Hylemon et al. 1973 146 | ATCC 14667 |
CCUG 15846 | DSM 11558 | LMG 4328, AF078756, Aqsp.delic | NCIB 9419
Aquaspirillum dispar AL Hylemon et al. 1973 = Microvirgula aerodenitri?cans (junior
heterotypic synonym) 104 | ATCC 27510 | DSM 736 184
18 2
Th e g enus Aqu asp irillu m sho uld be place with the Co mma mona dac eae .
18 3
Th is subspecie s was aut omat ically cre ated und er Rule 4 0d (fo rm erly Rule 46, IJS EM 50: 22 392 244)
18 4
M icrovirgula ae ro denitri?cans is th e type spe cies. Ru le 37a a nd R ule 42 a re in co n?ic t as to which nam e s hould b e retained .
74
Aquaspirillum fasciculus AL Strength et al. 1976 -> Prolinoborus fasciculus ATCC

27740 | LMG 6233
Aquaspirillum giesbergeri AL (Williams and Rittenberg 1957) Hylemon et al. 1973
ATCC 11334 | DSM 9157 | NCIB 9073 | NRRL B-2060
Aquaspirillum gracile AL (Canale-Parola et al. 1966) Hylemon et al. 1973 -> Hyle-
monella gracilis D4 | ATCC 19624, AF078753, Aqsp.graci | DSM 9158
Aquaspirillum itersonii subsp. itersonii AL (Giesberger 1936) Hylemon et al. 1973 185
<- Spirillum itersonii subsp. ittersonii (basonym) -> Levispirillum itersonii
subsp. ittersonii Giesberger | ATCC 12639 | NCIMB 9070, Z29620, Aqsp.iters |
NRRL B-2053
Aquaspirillum itersonii subsp. nipponicum AL (Terasaki 1973) Terasaki 1979 <- Spir-
illum itersonii subsp. nipponicum (basonym) -> Levispirillum itersonii subsp.
nipponicum KF 8 | ATCC 33333 | DSM 11590 | NBRC 13615
Aquaspirillum magnetotacticum VP Maratea and Blakemore 1981 -> Magnetospirillum
magnetotacticum MS-1, Y10110 | ATCC 31632 | DSM 3856 | NBRC 15272
Aquaspirillum metamorphum AL (Terasaki 1961) Hylemon et al. 1973 ATCC 15280
| CCUG 13794 | DSM 1837 | NBRC 12012 | LMG 4339, AF078757, Aqsp.metam |
NCIB 9509
Aquaspirillum peregrinum subsp. peregrinum AL (Pretorius 1963) Hylemon et al. 1973
-> Levispirillum peregrinum subsp. peregrinum ATCC 15387 | DSM 1839 |
NCIB 9435
Aquaspirillum peregrinum subsp. integrum AL (Terasaki 1973) Terasaki 1979 -> Lev-
ispirillum peregrinum subsp. integrum MF 19 | ATCC 33334 | DSM 11589 |
NBRC 13617
Aquaspirillum polymorphum AL (Williams and Rittenberg 1957) Hylemon et al. 1973
ATCC 11332 | DSM 9160 | IAM 14441 | NBRC 13961 | NCIB 9072 | NRRL B-2066
Aquaspirillum psychrophilum AL (Terasaki 1973) Terasaki 1979 CA 1 | ATCC 33335 |
DSM 11588 | NBRC 13611 | NBRC 13611 | LMG 5408, AF078755, Aqsp.psych
Aquaspirillum putridiconchylium AL (Terasaki 1961) Hylemon et al. 1973 ATCC 15279
| NBRC 12013 | NCIB 9508
Aquaspirillum sinuosum AL (Williams and Rittenberg 1957) Hylemon et al. 1973 ATCC
9786 | CCUG 13728 | LMG 4393, AF078754, Aqsp.sinos | NCIB 9010 | NCMB 59 |
NRRL B-2065 | VPI 18
Genus IV. Chromobacterium AL
Chromobacterium violaceum AL (T) Bergonzini 1881 ATCC 12472, M22510, Crb.violac
| DSM 30191 | NBRC 12614 | NCIB 9131 | NCTC 9757
Chromobacterium ?uviatile VP Moss et al. 1981 -> Iodobacter ?uviatilis 165 | ATCC
33051, M22511, Iod.?uvia | CCM 3308 | DSM 3764 | NCTC 11159
Genus V. Eikenella AL
Eikenella corrodens AL (T) (Eiken 1958) Jackson and Goodman 1972 333/54-55 | ATCC
23834, M22512, Eik.corrod | DSM 8340
Genus VI. Formivibrio VP 186
Formivibrio citricus VP (T) Tanaka et al. 1991 CreCit1 | ATCC 49791 | DSM 6150,
Y17602
Genus VII. Iodobacter VP
Iodobacter ?uviatilis VP (T) (Moss et al. 1981) Logan 1989 <- Chromobacterium ?uviatile
(basonym) Logan C009 | ATCC 33051, M22511, Iod.?uvia | CCM 3308 | DSM
3764 | NCTC 11159
Genus VIII. Kingella AL
Kingella kingae AL (T) (Henriksen and Bovre 1968) Henriksen and Bovre 1976 4177/66
| ATCC 23330, M22517, Kin.kingae | DSM 7536
18 5
Po t and Gillis prop ose that sub sp . Aqu asp irillu m iterso nii su bs p. ite rs on ii , s ubs p. nipon ic um, A. p eregrin um s ubs p. pe riig rinum and
subsp. in tegrum are miscla ssi?ed. The se species h ave be en t ra nsf erre d to a n ew g enus , Lev is pirillum.
18 6
P la ce ment of Fo rm ivib rio is based o n Hippe et a l., IJS B, 199 9,49: 779 and rec omm enda tion s by Ludw ig and Dewhirst.
75
Kingella denitri?cans AL Snell and Lapage 1976 ATCC 33394, M22516, Kin.denitr |
DSM 10202 | NCTC 10995
Kingella indologenes AL Snell and Lapage 1976 -> Suttonella indologenes ATCC
25869, M35015, St.indolog | DSM 8309 | NCTC 10717
Kingella oralis VP Dewhirst et al. 1993 UB-38, L06164, Kin.oralis | ATCC 51147 |
CCUG 30450, L06164, Kin.oralis
Genus IX. Laribacter VP
Laribacter hongkongensis VP (T) Yuen et al. 2002 HKU1, AF389085 | DSM 14985 | LMG
21516
Genus X. Microvirgula VP
Microvirgula aerodenitri?cans VP (T) Patureau et al. 1998 = Aquaspirillum dispar (senior
heterotypic synonym) SGLY2, U89333, Mvr.ardntf
Genus XI. Morococcus VP 187
Morococcus cerebrosus VP (T) Long et al. 1981 ATCC 33486 | NCTC 11393 | UQM 858
Genus XII. Prolinoborus VP
Prolinoborus fasciculus VP (T) (Strength et al. 1976) Pot et al. 1992 <- Aquaspirillum
fasciculus (basonym) XI | ATCC 27740 | CIP 103579 | LMG 6233
Genus XIII. Simonsiella AL
Simonsiella crassa AL Schmid 1922 S6 | ATCC 15533 | DSM 2578 | NCTC 10283
Simonsiella muelleri AL (T) Schmid 1922 36 | ATCC 29453, M59071, Sim.muelle | DSM
2579
Simonsiella steedae AL Kuhn and Gregory 1979 4 | ATCC 27409, AF328153 | DSM 2580
Genus XIV. Vitreoscilla AL 188
Vitreoscilla beggiatoides AL (T) Pringsheim 1949 emend. Strohl et al. 1986 ATCC 43189
| B23SS
Vitreoscilla ?liformis VP Strohl et al. 1986 L1401-2 | ATCC 43190

Vitreoscilla stercoraria AL Pringsheim 1951 SAG 1488-6 | ATCC 15218, L06174,
Vit.sterc2 | DSM 513
Genus XV. Vogesella VP
Vogesella indigofera VP (T) (Voges 1893) Grimes et al. 1997 <- Pseudomonas indigofera
(basonym) ATCC 19706, U45995, Crb.indgfr | DSM 3303 | IMET 10724
Order V. NitrosomonadalesNP
Family I. NitrosomonadaceaeNP
Genus I. Nitrosomonas AL (T)
Nitrosomonas europaea AL (T) Winogradsky 1892 C-31, M96399, Nmn.europ2 | ATCC
25978
Nitrosomonas aestuarii VP Koops et al. 2001 189 Nm 36, AJ298734
Nitrosomonas communis VP Koops et al. 2001 190 Nm 2, AJ298732
Nitrosomonas eutropha VP Koops et al. 2001 191 C-91 | Nm 57, AY123795
Nitrosomonas halophila VP Koops et al. 2001 192 Nm 1, AJ298731
Nitrosomonas marina VP Koops et al. 2001 193 Nm 22 194 , Z46990
18 7
S ly cit es unpu blished data that ind icates M orococcus cerebros us is c lose ly rela ted to Ne is se ria m ac aca e. Howev er, he ind ic ates th at an
assertion o f synonymy may be prema ture.
18 8
P la ce ment is based on V. stercoraria ra ther th an V. b eggiatoides , t he ty pe strain. Place men t bas ed on L udwigs rec omm enda tio n.
18 9
19 0
19 1
19 2
19 3
19 4
Culture colle ction num ber re ported incorre ctly in IJS EM.
76
Nitrosomonas mobilis NP Koops and Pommerening-Rser 2004 = Nitrosococcus mo-

bilis Nc2, AJ298728
Nitrosomonas nitrosa VP Koops et al. 2001 195 Nc 5 | Nm 90 196 , AJ298740
Nitrosomonas oligotropha VP Koops et al. 2001 197 Nm 45 198 , AJ298736
Nitrosomonas ureae VP Koops et al. 2001 199 Nm 10, AJ298730
Genus II. Nitrosolobus AL 200
Nitrosolobus multiformis AL (T) Watson et al. 1971 -> Nitrosospira multiformis C-71 |
ATCC 25196, L35509, Nss.multi3
Genus III. Nitrosospira AL
Nitrosospira briensis AL (T) Winogradsky and Winogradsky 1933
Nitrosospira multiformis VP (Watson et al. 1971) Head et al. 1995 <- Nitrosolobus
multiformis (basonym) C-71 | ATCC 25196 | ATCC 25196, L35509, Nss.multi3
Nitrosospira tenuis VP Head et al. 1995 Nv-1, AJ298746
Family II. Spirillaceae AL
Genus I. Spirillum AL (T)
Spirillum volutans AL (T) Ehrenberg 1832 Wells | ATCC 19554, M34131, Spr.voluta
Family III. Gallionellaceae AL
Genus I. Gallionella AL (T)
Gallionella ferruginea AL (T) Ehrenberg 1838 no culture isolated, L07897, Gal.ferrug
Order VI. RhodocyclalesNP
Family I. RhodocyclaceaeNP 201
Genus I. Rhodocyclus AL (T)
Rhodocyclus purpureus AL (T) Pfennig 1978 DSM 168, M34132, Rcy.purpur | NCIMB
13339
Rhodocyclus gelatinosus VP (Molisch 1907) Imhoff et al. 1984 <- Rhodopseudomonas
gelatinosa (basonym) -> Rubrivivax gelatinosus ATH 2.2.1, M60682, Rub.gelati
| ATCC 17011, D16213, Rub.gelat2 | DSM 1709 | LMG 4311 | NCIB 8290
Rhodocyclus tenuis VP (Pfennig 1969) Imhoff et al. 1984 <- Rhodospirillum tenue (ba-
sonym) SMG 109, D16208, Rcy.tenuis | ATCC 25093 | DSM 109
Genus II. Azoarcus VP
Azoarcus indigens VP (T) Reinhold-Hurek et al. 1993 VB32, AF011345, Azc.indig2 |
VB32, L15531, Azc.indige | DSM 12121 | LMG 9092
Azoarcus anaerobius VP Springer et al. 1998 LuFRes1, Y14701, Azc.anaero | DSM
12081
Azoarcus buckelii VP Mechichi et al. 2002 202 U120, AJ315676 | DSM 14744
Azoarcus communis VP Reinhold-Hurek et al. 1993 SWub3, AF011343, Azc.commu3 |
SWub3, X85432, Azc.commun | DSM 12120 | LMG 9095
Azoarcus evansii VP Anders et al. 1995 KB 740, X77679, Azc.evansi | DSM 6898
Azoarcus toluclasticus VP Song et al. 1999 MF63, AF123077 | ATCC 700605
Azoarcus tolulyticus VP Zhou et al. 1995 Tol-4, L33694, Azc.toluly | ATCC 51758
Azoarcus toluvorans VP Song et al. 1999 Td21, L33692, Azc.denit7 | ATCC 700604
Genus III. Azonexus VP
Azonexus fungiphilus VP (T) Reinhold-Hurek and Hurek 2000 BS5-8, AF011350 | LMG
19178
19 5
19 6
19 7
19 8
19 9
20 0
20 1
M azana n an d co-workers n ote that the Rhod ocycle s g ro up (Rho doc yc lace ae) is in need of re vision.
20 2
77
Genus IV. Azospira VP

Azospira oryzae VP (T) Reinhold-Hurek and Hurek 2000 6a3, AF011347 | LMG 9096
Genus V. Azovibrio VP
Azovibrio restrictus VP (T) Reinhold-Hurek and Hurek 2000 S5b2, AF011346 | LMG
9099
Genus VI. Dechloromonas VP
Dechloromonas agitata VP (T) Achenbach et al. 2001 CKB, AF047462 | ATCC 700666 |
DSM 13637
Genus VII. Dechlorosoma VP
Dechlorosoma suillum VP (T) Achenbach et al. 2001 PS, AF170348 | ATCC BAA-33 |
DSM 13638
Genus VIII. Ferribacterium VP
Ferribacterium limneticum VP Cummings et al. 2000 CdA-1, Y17060 | ATCC 700589
Genus IX. Propionibacter VP 203
Propionibacter pelophilus VP (T) Meijer et al. 1999 -> Propionivibrio pelophilus DSM
12018, AF016690
Genus X. Propionivibrio VP
Propionivibrio dicarboxylicus VP (T) Tanaka et al. 1991 CreMal1 | DSM 5885, Y17601 |
JCM 7784
Propionivibrio limicola VP Brune et al. 2002 GolChi1, AJ307983 | ATCC BAA-290 |
DSM 6832
Propionivibrio pelophilus VP (Meijer et al. 1999) Brune et al. 2002 204 <- Propionibacter
pelophilus (basonym) asp 66, AF016690 | DSM 12018
205
Genus XI. Quadricoccus VP

Quadricoccus australiensis VP (T) Maszenan et al. 2002 Ben 117, AY007722 | CIP
107055 | NCIMB 13738
Genus XII. Sterolibacterium VP
Sterolibacterium denitri?cans VP (T) Tarlera and Denner 2003 Chol-1S, AJ306683 |
ATCC BAA-354 | DSM 13999
Genus XIII. Thauera VP
Thauera selenatis VP (T) Macy et al. 1993 AX, X68491, Tha.selnat | ATCC 55363,
Y17591 206
Thauera aminoaromatica VP Mechichi et al. 2002 207 S2, AJ315677 | DSM 14742
Thauera aromatica VP Anders et al. 1995 K 172, X77118, Tha.aromat | DSM 6984
Thauera chlorobenzoica VP Song et al. 2001 208 3CB-1, AF123264 | ATCC 700723
Thauera linaloolentis VP Foss and Harder 1999 47Lol, AJ005816, Tha.linalo | DSM
12138
Thauera mechernichensis VP Scholten et al. 1999 TL1, Y17590 | DSM 12266
Thauera phenylacetica VP Mechichi et al. 2002 209 B4P, AJ315678 | DSM 14743
Thauera terpenica VP Foss and Harder 1999 58Eu, AJ005817, Tha.terpen | DSM 12139
Genus XIV. Zoogloea AL
Zoogloea ramigera AL (T) Itzigsohn 1868 106 | ATCC 19544, X74913, Dg.zooglo7
Zoogloea resiniphila VP Mohn et al. 1999 DhA-35, AJ011506 | ATCC 700687
Order VII. ProcabacterialesNP
20 3
20 4
20 5
P la ce ment of P ropionivibrio based on Hipp e et al., 19 99, I JS B 49: 779 and dis c uss ions with Lu dwig an d De whirs t.
20 6
The type strain o f Tha uera selena tis is not available as it is a rest rict ed d epo sit, made in as s oc iation wit h a pate nt a pplic ation. The
un ava ilability of the t he t ype ma teria l t ech nically ren ders both the s pec ie s a nd the genu s illeg itimate .
20 7
20 8
20 9
78
Family I. ProcabacteriaceaeNP
Genus I. "Procabacter"
Candidatus "Procabacter acanthamoebae"
Class III. Gammaproteobacteria NP 210
Order I. ChromatialesNP (T) 211
Family I. Chromatiaceae AL
Genus I. Chromatium AL (T)
Chromatium okenii AL (T) (Ehrenberg 1838) Perty 1852 DSM 169, AJ223234,
Chr.okeni2
Chromatium buderi AL Trper and Jannasch 1968 -> Isochromatium buderi ATCC
25588 | DSM 176, AJ224430, Ic.buderiT
Chromatium glycolicum VP Caumette et al. 1997 -> Halochromatium glycolicum SL
3201 | ATCC 700202 | DSM 11080
Chromatium gracile AL Strzeszewski 1913 -> Marichromatium gracile DSM 203
Chromatium minus AL Winogradsky 1888 -> Thiocystis minor DSM 178, Y12372,
Thc.minor1
Chromatium minutissimum AL Winogradsky 1888 -> Allochromatium minutissimum
glubokoe | DSM 1376, Y12369, Alm.minsim
Chromatium purpuratum VP Imhoff and Trper 1980 -> Marichromatium purpuratum
BN 5500, AF001580, Mch.purpu2 | DSM 1591, AJ224439, Mch.purpur
Chromatium salexigens VP Caumette et al. 1989 -> Halochromatium salexigens SG

3201 | DSM 4395, X98597, Hch.salexi
Chromatium tepidum VP Madigan 1986 -> Thermochromatium tepidum MC, M59150,
Tch.tepidm | ATCC 43061 | DSM 3771
Chromatium vinosum AL (Ehrenberg 1838) Winogradsky 1888 -> Allochromatium vi-
nosum ATCC 17899 | DSM 180
Chromatium violascens AL Perty 1852 -> Thiocystis violascens ATCC 17096,
AJ224438, Thc.vlscen | DSM 198
Chromatium warmingii AL (Cohn 1875) Migula 1900 -> Allochromatium warmingii
ATCC 14959 | DSM 173, Y12365, Alm.warmng
Chromatium weissei AL Perty 1852 DSM 171
Genus II. Allochromatium VP
Allochromatium vinosum VP (T) (Ehrenberg 1838) Imhoff et al. 1998 <- Chromatium
vinosum (basonym) ATCC 17899 | DSM 180
Allochromatium minutissimum VP (Winogradsky 1888) Imhoff et al. 1998 <- Chro-
matium minutissimum (basonym) glubokoe | DSM 1376, Y12369, Alm.minsim
Allochromatium warmingii VP (Cohn 1875) Imhoff et al. 1998 <- Chromatium
warmingii (basonym) ATCC 14959 | DSM 173, Y12365, Alm.warmng
Genus III. Amoebobacter AL 212
Amoebobacter roseus AL (T) Winogradsky 1888 -> Thiocapsa rosea DSM 235,
AJ002798, Tcp.rosea1 | DSM 235, AJ006062, Tcp.rosea2
Amoebobacter pedioformis VP Eichler and Pfennig 1987 -> Thiolamprovum pedio-
forme CML2 | DSM 3802, Y12297, Tav.pedfrm
Amoebobacter pendens AL (Molisch 1906) Pfennig and Trper 1971 -> Thiocapsa pen-
dens DSM 236, AJ002797, Tcp.penden
Amoebobacter purpureus VP Eichler and Pfennig 1989 -> Pfennigia purpurea ThSch
12 | DSM 4197, AJ223235, Abb.purpur | DSM 4197, Y12366, Abb.purpu2 | Schlein-
see
Genus IV. Halochromatium VP
Halochromatium salexigens VP (T) (Caumette et al. 1989) Imhoff et al. 1998 <- Chro-
matium salexigens (basonym) SG 3201 | DSM 4395, X98597, Hch.salexi
21 0
Lu dwig indicates that the B eta proteob acteria are em bed ded within t he G amm aproteo bac teria a nd tha t t he rela tiv e branc hing order ca nno t
be un ambiguo us ly de termined. Th is is clearly borne out in th e tree s and PC A plo ts.
211
Lud wig in dicate s that Chrom atia les is the dee pest bran ch ing group in th e G am maprot eoba cte ria.
21 2
79
Halochromatium glycolicum VP (Caumette et al. 1997) Imhoff et al. 1998 <- Chro-
matium glycolicum (basonym) SL 3201 | ATCC 700202 | DSM 11080
Genus V. Isochromatium VP
Isochromatium buderi VP (T) (Trper and Jannasch 1968) Imhoff et al. 1998 <- Chro-
matium buderi (basonym) ATCC 25588 | DSM 176, AJ224430, Ic.buderiT
Genus VI. Lamprobacter VP
Lamprobacter modestohalophilus VP (T) Gorlenko et al. 1988 INMI RO-1
Genus VII. Lamprocystis AL
Lamprocystis roseopersicina AL (T) (Ktzing 1849) Schroeter 1886 DSM 229,
AJ006063, Lpc.rosprs
Lamprocystis purpurea VP (Eichler and Pfennig 1989) Imhoff 2001 213 <- Pfennigia pur-
purea (basonym) BN 4450 | ThSch12 | DSM 4197, AJ223235, Abb.purpur | DSM
4197, Y12366, Abb.purpu2 | Schleinsee
Genus VIII. Marichromatium VP
Marichromatium gracile VP (T) (Strzeszewski 1913) Imhoff et al. 1998 <- Chromatium
gracile (basonym) DSM 203
Marichromatium purpuratum VP (Imhoff and Trper 1980) Imhoff et al. 1998 <- Chro-
matium purpuratum (basonym) BN 5500, AF001580, Mch.purpu2 | DSM 1591,
AJ224439, Mch.purpur
Genus IX. Nitrosococcus AL 214
Nitrosococcus nitrosus AL (T) (Migula 1900) Buchanan 1925
Nitrosococcus oceani AL (Watson 1965) Watson 1971 C-107, M96395, Nsc.ocean2 |
ATCC 19707
Genus X. Pfennigia VP
Pfennigia purpurea VP (T) (Eichler and Pfennig 1989) Tindall 1999 <- Amoebobac-
ter purpureus (basonym) -> Lamprocystis purpurea ThSch 12 | DSM 4197,
AJ223235, Abb.purpur | DSM 4197, Y12366, Abb.purpu2 | Schleinsee
Genus XI. Rhabdochromatium VP
Rhabdochromatium marinum VP (T) Dilling et al. 1996 8315-5, X84316, Rc.marinum |
DSM 5261
Genus XII. Rheinheimera VP
Rheinheimera baltica VP (T) Brettar et al. 2002 OSBAC1, AJ441080 | DSM 14885 | LMG
21511
Rheinheimera paci?ca VP Romanenko et al. 2003 CCUG 46544 | IAM 15043,
AB073132 | JCM 12090 | KMM 1406 | NRIC 0539
Genus XIII. Thermochromatium VP
Thermochromatium tepidum VP (T) (Madigan 1986) Imhoff et al. 1998 <- Chromatium
tepidum (basonym) MC, M59150, Tch.tepidm | ATCC 43061 | DSM 3771
Genus XIV. Thioalkalicoccus VP
Thioalkalicoccus limnaeus Bryantseva et al. 2000 A26, AJ277023 | ATCC BAA-32
Genus XV. Thiobaca VP
Thiobaca trueperi VP (T) Rees et al. 2002 BCH, AJ404006 | ATCC BAA-132 | DSM
13587
Genus XVI. Thiocapsa AL
Thiocapsa roseopersicina AL (T) Winogradsky 1888 BN 4210, Y12364, Tcp.rosprs | DSM
217
Thiocapsa halophila VP Caumette et al. 1991 -> Thiohalocapsa halophila SG 3202,
AJ002796, Thh.haloph | ATCC 49740 | DSM 6210
Thiocapsa litoralis VP Puchkova et al. 2000 BM5, AJ242772 | ATCC 700894
Thiocapsa pendens VP (Molisch 1906) Guyoneaud et al. 1998 <- Amoebobacter pendens
(basonym) DSM 236, AJ002797, Tcp.penden
21 3
21 4
K oop s pla ces Nitrosococcus an d Nitrosolo bus in Chrom atiace ae. Imh off on ly in co rp orates ph ototrop hs int o the fam ily.
80
Thiocapsa pfennigii AL Eimhjellen 1970 -> Thiococcus pfennigii DSM 1375 | DSM
226
Thiocapsa rosea VP (Winogradsky 1888) Guyoneaud et al. 1998 <- Amoebobacter
roseus (basonym) DSM 235, AJ002798, Tcp.rosea1 | DSM 235, AJ006062,
Tcp.rosea2
Genus XVII. Thiococcus VP
Thiococcus pfennigii VP (T) (Eimhjellen 1970) Imhoff et al. 1998 <- Thiocapsa pfennigii
(basonym) 4250, Y12373, Tco.pfnnig | RG3 | DSM 1375 | DSM 226
Genus XVIII. Thiocystis AL
Thiocystis violacea AL (T) Winogradsky 1888 2711, Y11315, Thc.vlacea | DSM 207,
Y11315, Thc.vlacea
Thiocystis gelatinosa AL (Winogradsky 1888) Pfennig and Trper 1971 2611, Y11317,
Thc.gelati | DSM 215, Y11317, Thc.gelati
Thiocystis minor VP (Winogradsky 1888) Imhoff et al. 1998 <- Chromatium minus (ba-
sonym) DSM 178, Y12372, Thc.minor1
Thiocystis violascens VP (Perty 1852) Imhoff et al. 1998 <- Chromatium violascens
(basonym) ATCC 17096, AJ224438, Thc.vlscen | DSM 198
Genus XIX. Thiodictyon AL
Thiodictyon elegans AL (T) Winogradsky 1888 3011 | DSM 232
Thiodictyon bacillosum AL (Winogradsky 1888) Pfennig and Trper 1971 1814 | DSM
234
Genus XX. Thio?avicoccus VP
Thio?avicoccus mobilis VP (T) Imhoff and Pfennig 2001 215 8321, AJ010125 | ATCC
700959
Genus XXI. Thiohalocapsa VP
Thiohalocapsa halophila VP (T) (Caumette et al. 1991) Imhoff et al. 1998 <- Thiocapsa
halophila (basonym) SG 3202, AJ002796, Thh.haloph | ATCC 49740 | DSM 6210
Genus XXII. Thiolamprovum VP
Thiolamprovum pedioforme VP (T) (Eichler and Pfennig 1987) Guyoneaud et al. 1998 <-
Amoebobacter pedioformis (basonym) CML 2 | Taichung | DSM 3802, Y12297,
Tav.pedfrm
Genus XXIII. Thiopedia AL
Thiopedia rosea AL (T) Winogradsky 1888
Genus XXIV. Thiorhodococcus VP
Thiorhodococcus minor VP (T) Guyoneaud et al. 1998 ATCC 700259 | CE2203, Y11316,
Trc.minor1 | DSM 11518
Genus XXV. Thiorhodovibrio VP
Thiorhodovibrio winogradskyi VP (T) Overmann et al. 1993 SSP1, AJ006214,
Trv.wingr2 | DSM 6702, AB016986, Trv.wingr3
Genus XXVI. Thiospirillum AL
Thiospirillum jenense AL (T) (Ehrenberg 1838) Migula 1900 DSM 216
Family II. Ectothiorhodospiraceae VP
Genus I. Ectothiorhodospira AL
Ectothiorhodospira mobilis AL (T) Pelsh 1936 DSM 237, X93481, Ec.mobilis
Ectothiorhodospira abdelmalekii VP Imhoff and Trper 1982 -> Halorhodospira ab-
delmalekii BN 9840 | ATCC 35917 | DSM 2110
Ectothiorhodospira haloalkaliphila VP Imhoff and Sling 1997 BN 9903, X93479,
Ec.haloalk | ATCC 51935
Ectothiorhodospira halochloris AL Imhoff and Trper 1979 -> Halorhodospira
halochloris BN 9850 | ATCC 35916, M59152, Hrh.halch2 | DSM 1059
Ectothiorhodospira halophila AL Raymond and Sistrom 1969 -> Halorhodospira
halophila DSM 244
21 5
81
Ectothiorhodospira marina VP Imhoff and Sling 1997 BA 1010 | DSM 241, X93476,
Ec.marina
Ectothiorhodospira marismortui VP Oren et al. 1990 EG-1 | DSM 4180, X93482,
Ec.marismo
Ectothiorhodospira shaposhnikovii AL Cherni et al. 1969 DSM 243, M59151, Ec.sha-
posh | KMMGU N1
Ectothiorhodospira vacuolata VP Imhoff et al. 1982 BN 9512 | ATCC 43036 | DSM 2111,
X93478, Ec.vacuola
Genus II. Alcalilimnicola VP
Alcalilimnicola halodurans VP (T) Yakimov et al. 2001 34A1c, AJ404972 | DSM 13718
| LMG 20111
Genus III. Alkalispirillum VP

Alkalispirillum mobile VP (T) Rijkenberg et al. 2002 SL-1 | DSM 12769, AF114783
216
Genus IV. Arhodomonas VP

Arhodomonas aquaeolei VP (T) Adkins et al. 1993 HA-1 | ATCC 49307, M26631,
Ard.aquaeo | DSM 8974
Genus V. Halorhodospira VP
Halorhodospira halophila VP (T) (Raymond and Sistrom 1969) Imhoff and Sling 1997
<- Ectothiorhodospira halophila (basonym) DSM 244
Halorhodospira abdelmalekii VP (Imhoff and Trper 1982) Imhoff and Sling 1997 <-
Ectothiorhodospira abdelmalekii (basonym) BN 9840 | ATCC 35917 | DSM 2110,
X93477, Hrh.abdelm
Halorhodospira halochloris VP (Imhoff and Trper 1979) Imhoff and Sling 1997 <-
Ectothiorhodospira halochloris (basonym) BN 9850 | ATCC 35916, M59152,
Hrh.halch2 | DSM 1059
Halorhodospira neutrophila VP Hirschler-Ra et al. 2003 217 SG 3301, AJ318525 | DSM
15116
Genus VI. Nitrococcus AL 218
Nitrococcus mobilis AL (T) Watson and Waterbury 1971 Nb-231 | ATCC 25380, L35510,
Nc.mobilis
Genus VII. Thioalkalispira VP 219
Thioalkalispira microaerophila VP (T) Sorokin et al. 2002 ALEN 1, AF481118 | DSM
14786 | UNIQEM 212
Genus VIII. Thialkalivibrio VP 220
Thialkalivibrio versutus VP (T) Sorokin et al. 2001 AL 2, AF126546 | CBS 100464 | DSM
13738
Thialkalivibrio denitri?cans VP Sorokin et al. 2001 ALJD, AF126545 | DSM 13742 |
NCCB 100001
Thialkalivibrio jannaschii VP (T) Sorokin et al 2002 ALM 2, AF329083 | DSM 14478 |
JCM 11372
Thialkalivibrio nitratis VP Sorokin et al. 2001 ALJ 12, AF126547 | DSM 13741 | NCCB
100002
Thialkalivibrio nitratireducens VP Sorokin et al. 2003 ALEN 2, AY079010 | DSM 14787
| UNIQEM 213
Thialkalivibrio paradoxus VP Sorokin et al. 2002 ARh 1, AF151432 | DSM 13531 | JCM
11367
Thialkalivibrio thiocyanoxidans VP Sorokin et al. 2002 ARh 2, AF302081 | DSM 13532
| JCM 11368
21 6
21 7
21 8
P la ce ment acco rd ing to PCA plots of Ga rrity and Lilbu rn . P os ition con ?rme d in b oth t he A RB and RDP trees .
21 9
Po sitio nin g of Th ioa lkalispira within t he Ectothiorho dospirac ea e is ba sed u pon the RDP rat her t han wha t wa s reporte d b y the S orokin et al.
22 0
Th ioa lkalivibrio h as bee n corrected to Th ialka livibrio by th e L is t E ditor of the IJ SE M
82
Genus IX. Thiorhodospira VP

Thiorhodospira sibirica VP (T) Bryantseva et al. 1999 A12, AJ006530, Trs.sibiri | ATCC
700588
Family III. HalothiobacillaceaeNP
Genus I. Halothiobacillus VP (T)
Halothiobacillus neapolitanus VP (T) (Parker 1957) Kelly and Wood 2000 <- Thiobacillus
neapolitanus (basonym) Parker X, AF173169 | CIP 104769 | DSM 15147 | NCIMB
8539
Halothiobacillus halophilus VP (Wood and Kelly 1995) Kelly and Wood 2000 <-
Thiobacillus halophilus (basonym) ATCC 49870, U58020 | DSM 6132
Halothiobacillus hydrothermalis VP (Durand et al. 1997) Kelly and Wood 2000 <-
Thiobacillus hydrothermalis (basonym) R3, M90662 | ATCC 51453 | DSM 7121
Halothiobacillus kellyi VP Sievert et al. 2000 Milos-BIII | DSM 13162, AF170419
Order II. AcidithiobacillalesNP
Family I. AcidithiobacillaceaeNP
Genus I. Acidithiobacillus VP (T)
Acidithiobacillus thiooxidans AL (T) (Waksman and Joffe 1922) Kelly and Wood 2000
<- Thiobacillus thiooxidans (basonym) = Thiobacillus concretivorus (junior het-
erotypic synonym) ATCC 19377, M79396 | ATCC 19377, M79397 | ATCC 19377,
M79398 | ATCC 19377, M79401 | NCIMB 8343
Acidithiobacillus albertensis VP (Bryant et al. 1988) Kelly and Wood 2000 <- Thiobacil-
lus albertensis (basonym) ATCC 35403 | DSM 14366 , AJ459804
Acidithiobacillus caldus VP (Hallberg and Lindstrm 1995) Kelly and Wood 2000 ->
Thiobacillus caldus KU | ATCC 51756 | DSM 8584, Z29975, Thb.caldus
Acidithiobacillus ferrooxidans AL (Temple and Colmer 1951) Kelly and Wood 2000
<- Thiobacillus ferrooxidans (basonym) ATCC 23270, M79404 | ATCC 23270,
M79405 | ATCC 23270, M79406 | NCIB 8455
Family II. ThermithiobacillaceaeNP
Genus I. Thermithiobacillus VP (T)
Thermithiobacillus tepidarius VP (T) (Wood and Kelly 1985) Kelly and Wood 2000 <-
Thiobacillus tepidarius (basonym) ATCC 43215, M79424 | ATCC 43215, M79425
| DSM 3134
Order III. XanthomonadalesNP 221

Family I. XanthomonadaceaeNP
Genus I. Xanthomonas AL (T)
Xanthomonas campestris AL (T) (Pammel 1895) Dowson 1939 emend. Vauterin et
al. 1995 P 25 | ATCC 33913 | CFBP 2350 | DSM 3586 | LMG 568, X95917,
Xan.campe7 | NCPPB 528 | PDDCC 13
Xanthomonas albilineans AL (Ashby 1929) Dowson 1943 LMG 494, X95918, Xan.al-
biln | ZA6 | ATCC 33915 | CFBP 2523 | DSM 3583 | NCPPB 2969 | PDDCC 196
Xanthomonas ampelina AL Panagopoulos 1969 -> Xylophilus ampelinus ATCC 33914,
AJ420330 | CNBP 1192 | DSM 7250, AF078758 | LMG 5856 | NCPPB 2217 | PDDCC
4298
Xanthomonas arboricola VP Vauterin et al. 1995 ICMP 35 | LMG 747, Y10757, Xan.ar-
bori | NCPPB 411
Xanthomonas axonopodis AL Starr and Garces 1950 emend. Vauterin et al. 1995 ATCC
19312 | DSM 3585 | ICMP 50 | ICPB XA 103 | LMG 538, X95919, Xan.axonop |
NCPPB 45
Xanthomonas bromi VP Vauterin et al. 1995 CFBP 1976 | ICMP 12545 | LMG 947,
Y10764, Xan.bromi1
Xanthomonas cassavae VP (ex Wiehe and Dowson 1953) Vauterin et al. 1995 ICMP
204 | LMG 673, Y10762, Xan.cassav | NCPPB 101
Xanthomonas citri VP (ex Hasse) Gabriel et al. 1989 3213 | ATCC 49118
22 1
Ludwig sta tes tha t th e X anth omo nada les p ro bably repres ents a s is ter g ro up of t he B eta proteob ac teria and bran ch higher than Chrom a-
tiale s .
83
Xanthomonas codiaei VP Vauterin et al. 1995 ICMP 9513 | LMG 8678, Y10765, Xan.co-
diae
Xanthomonas cucurbitae VP (ex Bryan 1926) Vauterin et al. 1995 CFBP 254 | ICMP
2299 | LMG 690, Y10760, Xan.cucurb | NCPPB 2597
Xanthomonas cynarae VP Trbaol et al. 2000 CFBP 4188, AF208315
Xanthomonas fragariae AL Kennedy and King 1962 ATCC 33239 | CFBP 2157 | DSM
3587 | LMG 708, X95920, Xan.fraga2 | NCPPB 1469 | PDDCC 5715
Xanthomonas hortorum VP Vauterin et al. 1995 ICMP 453 | LMG 733, Y10759,
Xan.hortor | NCPPB 939
Xanthomonas hyacinthi VP (ex Wakker 1883) Vauterin et al. 1995 ATCC 19314 | CFPB
1156 | ICMP 189 | LMG 739, Y10754, Xan.hyacin | NCPPB 599
Xanthomonas maltophilia VP (Hugh 1981) Swings et al. 1983 <- Pseudomonas mal-
tophilia (basonym) -> Stenotrophomonas maltophilia = Pseudomonas beteli (se-
nior heterotypic synonym) = Pseudomonas hibiscicola (senior heterotypic syn-
onym) 810-2 | RH 1168 | Stanier 67 | ATCC 13637, M59158, Ste.maltop | DSM
50170 | ICPB 2648-67 | LMG 958, X95923, Ste.malto3 | NCIB 9203 | NCTC 10257
Xanthomonas melonis VP Vauterin et al. 1995 ICMP 8682 | LMG 8670, Y10756,
Xan.meloni | NCPPB 3434
Xanthomonas oryzae VP (ex Ishiyama 1922) Swings et al. 1990 Dye YK9 | Rao X08 |
LMG 5047, X95921, Xan.oryza2 | NCCPPB 3002 | PDDCC 3125
Xanthomonas phaseoli VP (ex Smith) Gabriel et al. 1989 G27 | ATCC 49119
Xanthomonas pisi VP (ex Goto and Okabe 1958) Vauterin et al. 1995 ATCC 35936 |
ICMP 570 | LMG 847, Y10758, Xan.pisi1 | NCPPB 762
Xanthomonas populi VP (ex Rid 1958) van den Mooter and Swings 1990 ATCC 51165
| CFBP 1817 | CFBP 1817 | ICMP 58 | ICMP 5816 | LMG 5743, X95922, Xan.populi
| NCPPB 2959
Xanthomonas sacchari VP Vauterin et al. 1995 LMG 471, Y10766, Xan.saccha

Xanthomonas theicola VP Vauterin et al. 1995 ICMP 6774 | LMG 8684, Y10763,
Xan.theico
Xanthomonas translucens VP (ex Jones et al. 1917) Vauterin et al. 1995 ATCC 19319 |
ICMP 5752 | LMG 876, X99299, Xan.trnslu | NCPPB 973
Xanthomonas vasicola VP Vauterin et al. 1995 CFBP 2543 | ICMP 3103 | LMG 736,
Y10755, Xan.vasico | NCPPB 2417
Xanthomonas vesicatoria VP (ex Doidge 1920) Vauterin et al. 1995 ICMP 63 | LMG
911, Y10761, Xan.vesitr | NCPPB 422
Genus II. Frateuria VP
Frateuria aurantia VP (T) Swings et al. 1980 G-6 | Kond 67 | ATCC 33424 | DSM 6220,
AJ010481, Frt.aurant | NBRC 3245, AJ010481, Frt.aurant
Genus III. Fulvimonas VP
Fulvimonas soli VP (T) Mergaert et al. 2002 LMG 19981 | DSM 14263, AJ311653
Genus IV. Luteimonas VP
Luteimonas mephitis VP (T) Finkmann et al. 2000 B1953/27.1, AJ012228 | DSM 12574
Genus V. Lysobacter AL 222
Lysobacter enzymogenes subsp. enzymogenes AL (T) Christensen and Cook 1978 Ly e1 |
ATCC 29487 | DSM 2043, AJ298291 | UASM 495
Lysobacter enzymogenes subsp. cookii AL Christensen and Cook 1978 ATCC 29488 |
UASM 13B
Lysobacter antibioticus AL Christensen and Cook 1978 Ly a2 | ATCC 29479, AB019582,
Lyb.antbio | DSM 2044, AB019582, Lyb.antbio
Lysobacter brunescens AL Christensen and Cook 1978 ATCC 29482 | DSM 6979 | NCIB
11895
Lysobacter gummosus AL Christensen and Cook 1978 ATCC 29489 | DSM 6980 | NCIB
11896 | UASM 402
22 2
Lysob acter an tib iot icus be lon gs to the Xa ntho mona daceae . No s eque nc e a vaila ble fo r the ty pe st ra in, the re fore the pos ition of Lys ob ac ter
should be rega rd ed as tenta tive.
84
Genus VI. Nevskia AL 223

Nevskia ramosa AL (T) Famintzin 1892 Soe1, AJ001010, Nv.ramosa1 | DSM 11499
Genus VII. Pseudoxanthomonas VP
Pseudoxanthomonas broegbernensis VP (T) Finkmann et al. 2000 B1616/1, AJ012231 |
DSM 12573
Pseudoxanthomonas taiwanensis VP Chen et al. 2002 CB-226, AF427039 | ATCC BAA-
404 | CCRC 17172
Genus VIII. Rhodanobacter VP 224
Rhodanobacter lindaniclasticus VP (T) Nalin et al. 1999 RP5557, AF039167, Rhn.lndcls
| LMG 18385
Genus IX. Schineria VP

Schineria larvae VP (T) Tth et al. 2001 L1/68, AJ252143 | DSM 13226 | NCAIM B01938
Genus X. Stenotrophomonas VP
Stenotrophomonas maltophilia VP (T) (Hugh 1981) Palleroni and Bradbury 1993 <- Xan-
thomonas maltophilia (basonym) Hugh 810-2 | RH 1168 | Stanier 67 | ATCC 13637,
AB008509, Ste.malto2 | ATCC 13637, M59158, Ste.maltop | DSM 50170 | ICPB
2648-67 | IMET 10402 | LMG 958, X95923, Ste.malto3 | NCIB 9203 | NCTC 10257
Stenotrophomonas acidaminiphila VP Assih et al. 2002 AMX 19, AF273080 | ATCC
700916 | CIP 106456 | DSM 13117
Stenotrophomonas africana VP Drancourt et al. 1997 MGB, U62646, Ste.africa | CIP
104854
Stenotrophomonas nitritireducens VP Finkmann et al. 2000 L2, AJ012229 | DSM 12575
Stenotrophomonas rhizophila VP Wolf et al. 2002 e-p10, AJ293463 | ATCC BAA-473 |
DSM 14405
Genus XI. Thermomonas VP
Thermomonas haemolytica VP (T) Busse et al. 2002 A50-7-3, AJ300185 | DSM 13605 |
LMG 19653
Thermomonas brevis VP Mergaert et al. 2003 DSM 15422 | LMG 21746, AJ519989
Thermomonas fusca VP Mergaert et al. 2003 DSM 15424 | LMG 21737, AJ519986
Thermomonas hydrothermalis VP Alves et al. 2003 SGM-6, AF542054 | ATCC BAA-
470 | DSM 14834
Genus XII. Xylella VP
Xylella fastidiosa VP (T) Wells et al. 1987 2683 PCE-RR | ATCC 35879 | DSM 10026 |
ICMP 11140
Order IV. CardiobacterialesNP
Family I. Cardiobacteriaceae VP 225
Genus I. Cardiobacterium AL (T)
Cardiobacterium hominis AL (T) Slotnick and Dougherty 1964 ATCC 15826, M35014,
Car.homini | DSM 8339 | NCTC 10426
Genus II. Dichelobacter VP
Dichelobacter nodosus VP (T) (Beveridge 1941) Dewhirst et al. 1990 <- Bacteroides
nodosus (basonym) ATCC 25549 | DSM 20708 | VPI 2340
Genus III. Suttonella VP
Suttonella indologenes VP (T) (Snell and Lapage 1976) Dewhirst et al. 1990 <- Kingella
indologenes (basonym) ATCC 25869, M35015, St.indolog | DSM 8309 | NCTC
10717
Order V. ThiotrichalesNP
Family I. ThiotrichaceaeNP
Genus I. Thiothrix AL (T)
Thiothrix nivea AL (T) (Rabenhorst 1865) Winogradsky 1888 JP2, L40993, Thtx.nive2 |
DSM 5205
Thiothrix de?uvii VP Howarth et al. 1999 Ben57
22 3
Position ing ba se d o n th e location of Nevskia within the RDP tree.
22 4
R hoda noba cte r was in correctly p laced wit hin the Sph ing omo nada cea e in th e ?rs t v ers ion of the t ax onom ic ou tline.
22 5
L udwig n otes th at th e po sitio n of the Cardiobacteriaceae is un sta ble and dep ende nt o n th e tree ing met hod.
85
Thiothrix disciformis VP Aruga et al. 2002 B3-1, AB042532 | DSM 14473 | JCM 1136
Thiothrix eikelboomii VP Howarth et al. 1999 AP3, AB042819 | ATCC 49788
Thiothrix ?exilis VP Aruga et al. 2002 EJ2M-B, AB042545 | DSM 14609 | JCM 11135
Thiothrix fructosivorans VP Howarth et al. 1999 Q | ATCC 49748
Thiothrix unzii VP Howarth et al. 1999 A1 | ATCC 49747
Genus II. Achromatium AL 226
Achromatium oxaliferum AL (T) Schewiakoff 1893 no culture isolated, L42543, Ama.ox-
alif
Genus III. Beggiatoa AL
Beggiatoa alba AL (T) (Vaucher 1803) Trevisan 1845 LSU B18LD
Genus IV. Leucothrix AL
Leucothrix mucor AL (T) Oersted 1844 1 | ATCC 25107 | DSM 2157, X87277, Lct.mucor
Genus V. Thiobacterium VP
Thiobacterium bovistum VP (T) La Riviere and Kuenen 1989
Genus VI. Thiomargarita VP
Thiomargarita namibiensis VP (T) Schulz et al. 1999
227
Genus VII. Thioploca AL

Thioploca schmidlei AL (T) Lauterborn 1907
Thioploca araucae VP Maier and Gallardo 1984
Thioploca chileae VP Maier and Gallardo 1984
Thioploca ingrica VP Maier 1984 no pure culture, L40998, Thpl.ingri
Genus VIII. Thiospira AL
Thiospira winogradskyi AL (T) (Omelianski 1905) Visloukh 1914
Family II. FrancisellaceaeNP 228
Genus I. Francisella AL (T)
Francisella tularensis subsp. tularensis AL (T) (McCoy and Chapin 1912) Dorofeev 1947
B-38 | ATCC 6223, Z21931, Fnc.tularn
Francisella tularensis subsp. holarctica VP Olsufjev and Meshcheryakova 1983 GIEM

503
Francisella tularensis subsp. mediasiatica VP (ex Akimbaev 1966) Olsufjev and
Meshcheryakova 1983 GIEM 543
Francisella tularensis subsp. novicida NP (Larson et al. 1955) Sjstedt 2004 <- Fran-
cisella novicida (basonym) ATCC 15482
Francisella novicida AL (Larson et al. 1955) Olsu?ev et al. 1959 -> Francisella tu-
larensis subsp. novicida ATCC 15482
Francisella philomiragia VP (Jensen et al. 1969) Hollis et al. 1990 <- Yersinia philomi-
ragia (basonym) 0#319L | ATCC 25015 | DSM 7535
Family III. PiscirickettsiaceaeNP
Genus I. Piscirickettsia VP (T)
Piscirickettsia salmonis VP (T) Fryer et al. 1992 LF-89, U36941, Psr.salmo4 | ATCC(R)
VR 1361
Genus II. Cycloclasticus VP
Cycloclasticus pugetii VP (T) Dyksterhouse et al. 1995 PS-1, U12624, Cyc.pugeti | ATCC
51542
Genus III. Hydrogenovibrio VP
Hydrogenovibrio marinus VP (T) Nishihara et al. 1991 MH-110, D86374, Hgv.marinu |
DSM 11271 | JCM 7688, D86374, Hgv.marinu
Genus IV. Methylophaga VP
Methylophaga marina VP (T) Janvier et al. 1985 222 | ATCC 35842, X87338, Mp.ma-
rina2 | DSM 5689, X95459, Mp.marina | NCMB 2244
22 6
P osition in the RDP tree is no t based on seq uence d ata de rive d from th e typ e st ra in. Th erefore, t he plac emen t of Ac hrom atium s hould be
rega rd ed as tenta tive.
22 7
A via ble samp le of Th iom argarit a na mib ien sis has n ot y et been dep os ite d in an y cu lture co llec tion .
22 8
Th e p osition of the Fra ncisellaceae is amb igu ous within t he ARB tree .
86
Methylophaga alcalica VP Doronina et al. 2003 M39, AF384373 | ATCC BAA-297 |

VKM B-2251
Methylophaga sul?dovorans VP de Zwart et al. 1998 RB-1, X95461, Mp.sl? dvo | LMD
95.210
Methylophaga thalassica VP Janvier et al. 1985 ATCC 33146, X87339, Mp.thalas2 |
DSM 5690, X95460, Mp.thalass | IAM 12458 | LMG 4055 | NCMB 2163
Genus V. Thioalkalimicrobium VP
Thioalkalimicrobium aerophilum VP (T) Sorokin et al. 2001 AL 3, AF126548 | CBS
100465 | DSM 13739
Thioalkalimicrobium cyclicum VP Sorokin et al 2002 ALM 1, AF329082 | DSM 14477
| JCM 11371
Thioalkalimicrobium sibiricum VP Sorokin et al. 2001 AL 7, AF126549 | DSM 13740 |

NCCB 100000
Genus VI. Thiomicrospira AL
Thiomicrospira pelophila AL (T) Kuenen and Veldkamp 1972 4B | ATCC 27801 | DSM
1534, L40809, Tms.peloph
Thiomicrospira chilensis VP Brinkhoff et al. 1999 Ch-1, AF013975, Tms.chilns | DSM
12352
Thiomicrospira crunogena VP Jannasch et al. 1985 TH-55 | ATCC 35932, L40810,
Tms.crunog | DSM 12353 | LMD 84.00
Thiomicrospira denitri?cans AL Timmer-ten Hoor 1975 ATCC 33889 | DSM 1251,
L40808, Tms.denitr 229
Thiomicrospira frisia VP Brinkhoff et al. 1999 JB-A2, AF013974, Tms.frisia | DSM
12351
Thiomicrospira kuenenii VP Brinkhoff et al. 1999 JB-A1, AF013978, Tms.kuenen |
DSM 12350
Thiomicrospira thyasirae VP (Wood and Kelly 1995) Wood and Kelly 1995 <- Thiobacil-
lus thyasiris (basonym) TG2 | ATCC 51452 | DSM 5322, AF016046, Tms.thyas2
Order VI. LegionellalesNP
Family I. Legionellaceae AL
Genus I. Legionella AL (T)
Legionella pneumophila subsp. pneumophila AL (T) Brenner et al. 1979 Philadelphia 1,
M36023, Leg.pneuP1 | ATCC 33152, M59157, Leg.pneumo | DSM 7513
Legionella pneumophila subsp. fraseri VP Brenner et al. 1989 Los Angeles 1, M36025,
Leg.pneum2 | ATCC 33156 | DSM 7514
Legionella pneumophila subsp. pascullei VP Brenner et al. 1989 U8W | ATCC 33737 |
DSM 7515
Legionella adelaidensis VP Benson et al. 1991 1762-Aus-E | ATCC 49625
Legionella anisa VP Gorman et al. 1985 WA-316-C3, Z32635, Leg.anisa2 | ATCC
35292, X73394, Leg.anisa
Legionella beliardensis VP Lo Presti et al. 2001 Montbliard A1, AF122884 | ATCC
700512 | CIP 106632
Legionella birminghamensis VP Wilkinson et al. 1988 1407-AL-H | ATCC 43702
Legionella bozemanii VP Brenner et al. 1980 -> Fluoribacter bozemanae WIGA,
M36031, Flu.bozema | ATCC 33217
Legionella brunensis VP Wilkinson et al. 1989 441-1, Z32636, Leg.brune2 | ATCC
43878
Legionella busanensis VP Park et al. 2003 K9951, AF424887 | ATCC BAA-518 | KCTC
12084
Legionella cherrii VP Brenner et al. 1985 ORW | ATCC 35252, X73404, Leg.cherri
Legionella cincinnatiensis VP Thacker et al. 1989 72-OH-H | ATCC 43753, X73407,
Leg.cincin
Legionella dumof?i VP Brenner et al. 1980 -> Fluoribacter dumof?i NY 23, Z32637,
Flu.dumof3 | ATCC 33279, X73405, Flu.dumof2
22 9
Th e ident ity of Thio microspira den itri?cans is questionab le as it belong s w ithin the E ps ilonp ro teob act eria.
87
Legionella drozanskii VP Adeleke et al. 2001 230 LLAP-1, X97355 | ATCC 700990
Legionella erythra VP Brenner et al. 1985 SE-32A-C8, Z32638, Leg.eryth2 | ATCC
35303
Legionella fair?eldensis VP Thacker et al. 1991 1725-Aus-E | ATCC 49588
Legionella fallonii VP Adeleke et al. 2001 231 LLAP-10, X97363 | ATCC 700992
Legionella feeleii VP Herwaldt et al. 1984 WO-44C | ATCC 35072, X73395, Leg.feelei
Legionella geestiana VP Dennis et al. 1993 1308 | ATCC 49504
Legionella gormanii VP Morris et al. 1980 -> Fluoribacter gormanii LS-13, Z32639,
Flu.gorma2 | ATCC 33297
Legionella gratiana VP Bornstein et al. 1991 Lyon 8420412 | ATCC 49413
Legionella gresilensis VP Lo Presti et al. 2001 Groux 11 D13, AF122883 | ATCC
700509 | CIP 106631
Legionella hackeliae VP Brenner et al. 1985 Lansing 2, M36028, Leg.hackel | ATCC
35250
Legionella israelensis VP Bercovier et al. 1986 Bercovier 4, Z32640, Leg.israe2 | ATCC
43119, X73408, Leg.israel
Legionella jamestowniensis VP Brenner et al. 1985 JA-26-G1-E2 | ATCC 35298,
X73409, Leg.jamest
Legionella jordanis VP Cherry et al. 1982 BL-540, Z32667, Leg.jorda2 | ATCC 33623,
X73396, Leg.jordan
Legionella lansingensis VP Thacker et al. 1994 1677-MI-H | ATCC 49751
Legionella londiniensis VP Dennis et al. 1993 1477 | ATCC 49505
Legionella longbeachae VP McKinney et al. 1982 Long Beach 4, M36029, Leg.longbe
| ATCC 33462 | DSM 10572 | NCTC 11477
Legionella lytica VP (Drozanski 1991) Hookey et al. 1996 <- Sarcobium lyticum (ba-
sonym) L2, X97364, Leg.lytic3 | PCM 2298
Legionella maceachernii VP Brenner et al. 1985 -> Tatlockia maceachernii PX-1-
G2-EZ, Z32641, Tat.macea2 | ATCC 35300
Legionella micdadei VP Hebert et al. 1980 = Legionella pittsburghensis (homotypic
synonym) -> Tatlockia micdadei TATLOCK, M36032, Tat.micdad | ATCC 33218
Legionella moravica VP Hebert et al. 1980 316-36 | ATCC 43877
Legionella nautarum VP Dennis et al. 1993 1224 | ATCC 49506
Legionella oakridgensis VP Orrison et al. 1983 Oak Ridge 10, Z32642, Leg.oakrd2 |
ATCC 33761, X73397, Leg.oakrdg
Legionella parisiensis VP Brenner et al. 1985 PF-209C-C2 | ATCC 35299
Legionella pittsburghensis VP Pasculle et al. 1980 = Legionella micdadei (homotypic
synonym) TATLOCK, M36032 | ATCC 33218
Legionella quateirensis VP Dennis et al. 1993 1335 | ATCC 49507
Legionella quinlivanii VP Benson et al. 1990 1442-Aus-E | ATCC 43830
Legionella rowbothamii VP Adeleke et al. 2001 232 LLAP-6, X97359 | ATCC 700991
Legionella rubrilucens VP Brenner et al. 1985 WA-270A-C2, Z32643, Leg.rubri2 |
ATCC 35304, X73398, Leg.rubril | DSM 11884
Legionella sainthelensi VP Campbell et al. 1984 Mt. St. Helens 4 | ATCC 35248,
X73399, Leg.stheln
Legionella santicrucis VP Brenner et al. 1985 SC-63-C7 | ATCC 35301
Legionella shakespearei VP Verma et al. 1992 214 | ATCC 49655
Legionella spiritensis VP Brenner et al. 1985 Mount Saint Helens 9, M36030, Leg.spirit
| ATCC 35249
23 0
23 1
23 2
88
Legionella steigerwaltii VP Brenner et al. 1985 SC-18-C9 | ATCC 35302, X73400,

Leg.steigw
Legionella taurinensis VP Lo Presti et al. 1999 Turin I no. 1, AF037597, Leg.taurin |
ATCC 700508, AF037597, Leg.taurin
Legionella tucsonensis VP Thacker et al. 1990 1087-AZ-H, Z32644, Leg.tucson | ATCC
49180
Legionella wadsworthii VP Edelstein et al. 1983 Wadsworth 81-716A | ATCC 33877,
X73401, Leg.wdswrt
Legionella waltersii VP Benson et al. 1996 2074-AUS-E, AF122886 | ATCC 51914
Legionella worsleiensis VP Dennis et al. 1993 1347 | ATCC 49508
Family II. CoxiellaceaeNP 233
Genus I. Coxiella AL (T)
Coxiella burnetii AL (T) (Derrick 1939) Philip 1948 ATCC VR 615
Genus II. Aquicella VP
Aquicella lusitana VP (T) Santos et al. 2004 CIP 107650 | LMG 21647 | SGT-39,
AY359282
Aquicella siphonis VP Santos et al. 2004 SGT-108, AY359283 | CIP 107651 | LMG
21648
Genus III. Rickettsiella AL
Rickettsiella popilliae AL (T) (Dutky and Gooden 1952) Philip 1956 no culture isolated
Rickettsiella chironomi VP Weiss et al. 1984 no culture isolated
Rickettsiella grylli VP Weiss et al. 1984 no culture isolated, U97547, Rcl.grylli
Rickettsiella stethorae VP Hall and Badgley 1957 no culture isolated
Order VII. MethylococcalesNP 234
Family I. Methylococcaceae VP
Genus I. Methylococcus AL (T)
Methylococcus capsulatus AL (T) Foster and Davis 1966 ACM 1292, X72770,
Mlc.capsu3 | ATCC 19069
Methylococcus bovis VP Romanovskaya et al. 1981 = Methylococcus luteus (senior
heterotypic synonym) CM of Whittenbury
Methylococcus chroococcus VP Romanovskaya et al. 1981 9 of Whittenbury
Methylococcus luteus VP Romanovskaya et al. 1981 -> Methylobacter luteus = Methy-
lococcus bovis (junior heterotypic synonym) IMET 10584 | UCM 53B | VKM 53
B
Methylococcus mobilis VP Hazeu et al. 1980 LMD 77.28
Methylococcus thermophilus AL Malashenko et al. 1975 ACM 3585, X73819, Mlc.th-
phil | IMV-2Yu | VKM-2-Yu
Methylococcus vinelandii VP Romanovskaya et al. 1981 = Methylococcus whittenburyi
(heterotypic synonym) Mexica of Whittenbury
Methylococcus whittenburyi VP Romanovskaya et al. 1981 = Methylococcus vinelandii
(heterotypic synonym) -> Methylobacter whittenburyi 1521 of Whittenbury
Genus II. Methylobacter VP
Methylobacter luteus VP (T) (Romanovskaya et al. 1981) Bowman et al. 1993 <- Methy-
lococcus luteus (basonym) ACM 3304 | IMET 10584 | NCIMB 11914, M95657,
Mbc.luteus | UCM 53 B | VKM-53B
Methylobacter agilis VP Bowman et al. 1993 -> Methylomicrobium agile A30,
X72767 | ACM 3308 | ATCC 35068 | NCIMB 11124
Methylobacter albus VP Bowman et al. 1993 -> Methylomicrobium album ACM 3314,
X72777 | NCIMB 11123 | VKM-BG8
Methylobacter marinus VP Bowman et al. 1993 A45, AF304197 | Lidstrom A4 | ACM
4717
23 3
Th e position of the Coxie llace ae is a mbiguo us within th e A RB tree.
23 4
Th e p osition of the Meth ylococca les is am big uous with in the AR B tre e.
89
Methylobacter pelagicus VP (Sieburth et al. 1988) Bowman et al. 1993 <- Methy-
lomonas pelagica (basonym) -> Methylomicrobium pelagicum AA23 | NCIMB
2265
Methylobacter psychrophilus VP Omelchenko et al. 2000 Z-0021 | VKM B-2103,
AF152597
Methylobacter whittenburyi VP (Romanovskaya et al. 1981) Bowman et al. 1993 <-
Methylococcus whittenburyi (basonym) Y | 1521 of Whittenbury | ACM 3310,
X72773, Mbc.whtbur | NCIMB 11128, L20843, Mbc.capsul
Genus III. Methylocaldum VP
Methylocaldum szegediense VP (T) Bodrossy et al. 1998 OR2, U89300, Mca.szeged
Methylocaldum gracile VP Bodrossy et al. 1998 14L, U89298 | NCIMB 11912
Methylocaldum tepidum VP Bodrossy et al. 1998 LK6, U89297, Mca.tepidu
Genus IV. Methylomicrobium VP
Methylomicrobium agile VP (T) (Bowman et al. 1993) Bowman et al. 1995 <- Methy-
lobacter agilis (basonym) A30 | ACM 3308, X72767, Mmb.agile | ATCC 35068 |
NCIMB 11124
Methylomicrobium album VP (Bowman et al. 1993) Bowman et al. 1995 <- Methy-
lobacter albus (basonym) ACM 3314, X72777, Mmb.album | NCIMB 11123 |
VKM-BG8
Methylomicrobium buryatense VP Kaluzhnaya et al. 2001 235 5B, AF307138 236 | VKM
B-2245
Methylomicrobium pelagicum VP (Sieburth et al. 1988) Bowman et al. 1995 <- Methy-
lobacter pelagicus (basonym) AA-23 | ACM 3505, X72775, Mmb.pelagi | NCMB
2265
Genus V. Methylomonas VP
Methylomonas methanica VP (T) Whittenbury and Krieg 1984 ACM 3307 | ATCC 35067
| IMET 10542 | NCIB 11130
Methylomonas aurantiaca VP Bowman et al. 1990 JB103, X72776, Mlm.aurant | UQM

3406
Methylomonas fodinarum VP Bowman et al. 1990 LD2 | UQM 3268, X72778, Mlm.fod-
inr
Methylomonas pelagica VP Sieburth et al. 1988 -> Methylobacter pelagicus AA-23 |
NCMB 2265
Methylomonas scandinavica VP Kalyuzhnaya et al. 2000 SR5, AJ131369 | VKM B-2140
Genus VI. Methylosarcina VP
Methylosarcina ?brata VP (T) Wise et al. 2001 AML-C10, AF177296 | ATCC 700909 |
DSM 13736
Methylosarcina quisquiliarum VP Wise et al. 2001 AML-D4, AF177297 | ATCC 700908
| DSM 13737
Genus VII. Methylosphaera VP

Methylosphaera hansonii VP (T) Bowman et al. 1998 ACAM 549 | AM6, U67929,
Met.hanson
Order VIII. OceanospirillalesNP 237
Family I. OceanospirillaceaeNP
Genus I. Oceanospirillum AL (T)
Oceanospirillum linum AL (T) (Williams and Rittenberg 1957) Hylemon et al. 1973
ATCC 11336 | DSM 6292 | NCIMB 56
Oceanospirillum beijerinckii subsp. beijerinckii AL ((Williams and Rittenberg 1957)
Hylemon et al. 1973) emend. Satomi et al. 2002 ATCC 12754 | DSM 7166 |
LMG 5405 | NCMB 52 | VPI 34
23 5
23 6
Ge nBa nk acce ssio n n umbe r for strain 5 B (A F3071 39) inc orre ctly reporte d in I JS EM .
23 7
Th e p osition of the Ocea nospirillale s wit hin the A RB tree is a mbiguou s.
90
Oceanospirillum beijerinckii subsp. pelagicum VP (Terasaki 1973) Pot et al. 1989 <-
Oceanospirillum pelagicum (basonym) -> Oceanospirillum beijerinckii ATCC
33337 | DSM 6288 | NBRC 13612, AB006761, Osp.beipel | LMG 5307 | NCMB 2228
| SWC UF1
Oceanospirillum commune VP (Baumann et al. 1972) Bowditch et al. 1984 <- Al-
teromonas communis (basonym) = Marinomonas communis (senior homotypic
synonym) 8 | ATCC 27118
Oceanospirillum hiroshimense AL (Terasaki 1973) Terasaki 1979 -> Oceanospirillum
maris subsp. hiroshimense DSM 9524 | NBRC 13616 | LMG 5305 | LMG 7371
Oceanospirillum jannaschii VP Bowditch et al. 1984 207 | ATCC 27135 | DSM 6295 |
NBRC 15466, AB006765, Osp.janna2 | NCIMB 2044
Oceanospirillum japonicum AL (Watanabe 1959) Hylemon et al. 1973 ATCC 19191,
AB006766 | DSM 7165 | VPI 38
Oceanospirillum kriegii VP Bowditch et al. 1984 -> Oceanobacter kriegii 197 | ATCC
27133 | DSM 6294 | NBRC 15467, AB006767, Osp.krieg2 | NCIMB 2042
Oceanospirillum maris subsp. maris AL (Hylemon et al. 1973) emend. Satomi et al.
2002 Jannasch 101 | ATCC 27509, AB006771, Osp.marmar | DSM 6286 | LMG
5213 | NCIMB 2226 | VPI 35
Oceanospirillum maris subsp. hiroshimense VP (Terasaki 1973) Pot et al. 1989 ->
Oceanospirillum maris <- Oceanospirillum hiroshimense (basonym) LMG 5305
| LMG 7371 | SWC OF2
Oceanospirillum maris subsp. williamsae VP Linn and Krieg 1978 -> Oceanospirillum
maris 2b | ATCC 29547 | NBRC 15468, AB006763, Osp.marwil
Oceanospirillum minutulum AL (Watanabe 1959) Hylemon et al. 1973 -> Marinospir-
illum minutulum ATCC 19193, AB006769, Mrs.minutl | DSM 6287 | NCIMB 1347
Oceanospirillum multiglobuliferum AL (Terasaki 1973) Terasaki 1979 NBRC 13614,
AB006764, Osp.multi2
Oceanospirillum pelagicum AL (Terasaki 1973) Terasaki 1979 -> Oceanospirillum bei-
jerinckii subsp. pelagicum DSM 6288 | NBRC 13612 | NCIMB 2228
Oceanospirillum pusillum AL (Terasaki 1973) Terasaki 1979 -> Terasakiella pusilla
ATCC 33338 | DSM 6293 | IAM 14442 | NBRC 13613, AB006768, Osp.pusil2 |
NCIMB 2229
Oceanospirillum vagum VP (Baumann et al. 1972) Bowditch et al. 1984 <- Alteromonas
vaga (basonym) = Marinomonas vaga (senior homotypic synonym) 40, X67025
| ATCC 27119
Genus II. Balneatrix VP

Balneatrix alpica VP (T) Dauga et al. 1993 4 87, Y17112, Bln.alpica | CIP 103589
Genus III. Marinomonas VP
Marinomonas communis VP (T) (Baumann et al. 1972) van Landschoot and De Ley 1984
<- Alteromonas communis (basonym) = Oceanospirillum commune (junior homo-
typic synonym) 8 | ATCC 27118
Marinomonas mediterranea VP Solano and Sanchez-Amat 1999 MMB-1, AF063027 |
CECT 4803 | ATCC 700492
Marinomonas primoryensis VP Romanenko et al. 2003 JCM 11775 | KMM 3633,
AB074193 | NRIC 523
Marinomonas vaga VP (Baumann et al. 1972) van Landschoot and De Ley 1984 <-
Alteromonas vaga (basonym) = Oceanospirillum vagum (junior homotypic syn-
onym) ATCC 27119, X67025, Mrm.vaga2 | CCUG 16047 | CIP 74.02 | DSM 5605
| LMG 2845 | NCMB 1962
Genus IV. Marinospirillum VP

Marinospirillum minutulum VP (T) (Watanabe 1959) Satomi et al. 1998 <- Oceanospir-
illum minutulum (basonym) ATCC 19193, AB006769, Mrs.minutl | DSM 6287 |
NCIMB 1347
91
Marinospirillum alkaliphilum VP Zhang et al. 2002 238 Z4, AF275713 | CGMCC AS

1.2746
Marinospirillum insulare VP Satomi et al. 2004 K, AB098514 | LMG 21802 | NBRC
100033
Marinospirillum megaterium VP Satomi et al. 1998 H7 | JCM 10129
Genus V. Neptunomonas VP
Neptunomonas naphthovorans VP (T) Hedlund et al. 1999 ATCC 700637 | NAG-2N-126,
AF053734, Npm.nphthv
Genus VI. Oceanobacter VP
Oceanobacter kriegii VP (T) (Bowditch et al. 1984) Satomi et al. 2002 239 <- Oceanospir-
illum kriegii (basonym) 197 | ATCC 27133 | DSM 6294 | NBRC 15467, AB006767,
Osp.krieg2 | NCIMB 2042
Genus VII. Oleispira VP
Oleispira antarctica VP (T) Yakimov et al. 2003 RB-8, AJ426420 | DSM 14852 | LMG
21398
Genus VIII. Pseudospirillum VP
Pseudospirillum japonicum VP (T) (Watanabe 1959) Satomi et al. 2002 240 <- Oceanospir-
illum japonicum (basonym) ATCC 19191, AB006766
Genus IX. Thalassolituus VP
Thalassolituus oleivorans VP (T) Yakimov et al. 2004 MIL-1, AJ431699 | DSM 14913 |
LMG 21420
Family II. Alcanivoraceae NP
Genus I. Alcanivorax VP (T)
Alcanivorax borkumensis VP (T) Yakimov et al. 1998 = Fundibacter jadensis (senior
heterotypic synonym) SK2, Y12579, Aln.borkum | DSM 11573
Alcanivorax jadensis VP (Bruns and Berthe-Corti 1999) Fernndez-Martnez et al. 2003
<- Fundibacter jadensis (basonym) T9, AJ001150 | DSM 12178
Alcanivorax venustensis VP Fernndez-Martnez et al. 2003 ISO4, AF328762 | CECT
5388 | DSM 13974
Genus II. Fundibacter VP 241
Fundibacter jadensis VP (T) Bruns and Berthe-Corti 1999 = Alcanivorax borkumensis
(junior heterotypic synonym) T9, AJ001150, Fn.jadensi | DSM 12178
Family III. HahellaceaeNP
Genus I. Hahella VP (T)
Hahella chejuensis VP (T) Lee et al. 2001 242 KCTC 2396, AF195410 | IMSNU 11157
Genus II. Zooshikella VP 243
Zooshikella ganghwensis VP (T) Yi et al. 2003 JC2044, AY130994 | DSM 15267 | KCTC
12044 | IMSNU 14003
Family IV. Halomonadaceae VP
Genus I. Halomonas VP (T)
Halomonas elongata VP (T) Vreeland et al. 1980 1H9 | ATCC 33173, M93355,
Hlm.elong2 | ATCC 33173, X67023, Hlm.elonga | DSM 2581 | IAM 14166
Halomonas alimentaria VP Yoon et al. 2002 YKJ-16, AF211860 | JCM 10888 | KCCM
41042
23 8
23 9
24 0
24 1
The 16 S seque nce o f the type species of Fundibacte r shows 97.94 % s imilarit y to A lc anivo ra x. A s A lc anivo ra x ha s prec ede nce , Fu ndibac -
ter sh ould b e reg arded as a junior he terotypic synon ym of Alc anivo ra x.
24 2
24 3
The cu rren t posit ion of Zooshike lla is ten tative and b ased on the lim ite d tax on s am pling o f Yi et al. There a ppea rs to be a s trin g af?nit y to
nu merous P seudo mona s sp p a s well a s Microbu lbifer, Marin obac te r and Marinoba cte rium .
92
Halomonas aquamarina VP (ZoBell and Upham 1944) Dobson and Franzmann 1996 <-
Deleya aquamarina (basonym) 558 | ATCC 14400, M93352, Hlm.aqmari | DSM
30161 | IAM 12550 | NCMB 557
Halomonas axialensis VP Kaye et al. 2004 Althf1, AF212206 | ATCC BAA-802 | CECT
5812 | DSM 15723
Halomonas campisalis VP Mormile et al. 2000 A4 | ATCC 700597, AF054286
Halomonas canadensis VP Huval et al. 1996 -> Chromohalobacter canadensis HX |
ATCC 43984, AJ295143 | DSM 6769, AF211861 | NRCC 41227
Halomonas cupida VP (Baumann et al. 1972) Dobson and Franzmann 1996 <- Deleya
cupida (basonym) 79 | ATCC 27124 | DSM 4740, L42615, Hlm.cupida
Halomonas desiderata VP Berendes et al. 1997 FB2, X92417, Hlm.desdra | DSM 9502
Halomonas eurihalina VP (Quesada et al. 1990) Mellado et al. 1995 <- Volcaniella
eurihalina (basonym) F9-6 | ATCC 49336, L42620, Hlm.euriha | ATCC 49336,
X87218, Hlm.eurih2 | DSM 5720
Halomonas halmophila VP (Elazari-Volcani 1940) Franzmann et al. 1989 emend.
Dobson et al. 1990 <- Flavobacterium halmophilum (basonym) ATCC 19717,
M59153 | DSM 5349 | IAM 14439 | NCMB 1971
Halomonas halocynthiae VP Romanenko et al. 2002 DSM 14573 | KMM 1376,
AJ417388
Halomonas halodenitri?cans VP (Robinson and Gibbons 1952) Dobson and Franzmann
1996 <- Paracoccus halodenitri?cans (basonym) ATCC 13511, L04942,
Hlm.halden | ATCC 13511 | CCM 286 | DSM 735 | NCMB 700
Halomonas halodurans VP Hebert and Vreeland 1987 C-1 | ATCC 29686, L42619 | DSM
5160
Halomonas halophila VP (Quesada et al. 1984) Dobson and Franzmann 1996 <- De-
leya halophila (basonym) F5-7 | CCM 3662, L42619, Hlm.haldur | DSM 4770,
M93353, Hlm.hphila
Halomonas hydrothermalis VP Kaye et al. 2004 Slthf2, AF212218 | ATCC BAA-800 |
CECT 5814 | DSM 15725
Halomonas israelensis VP Huval et al. 1996 -> Chromohalobacter israelensis Ba1 |
ATCC 43985, AJ295144 | DSM 6768, AF211862
Halomonas magadiensis VP Duckworth et al. 2000 21M1 | NCIMB 13595
Halomonas marina VP (Cobet et al. 1970) Dobson and Franzmann 1996 <- Deleya
marina (basonym) -> Cobetia marina 219 | ATCC 25374, M93354, Hlm.marina |
CECT 4278 | CIP 104765 | DSM 4741 | LMG 2217 | NCIMB 1877
Halomonas maris?avi VP Yoon et al. 2001 SW32, AF251143 | JCM 10873 | KCCM
80003
Halomonas maura VP Bouchotroch et al. 2001 S-31 | CECT 5298 | DSM 13445
Halomonas meridiana VP James et al. 1990 ACAM 246 | ATCC 49692 | DSM 5425,
M93356, Hlm.meridi | UQM 3352
Halomonas muralis VP Heyrman et al. 2002 R-5058 | DSM 14789 | LMG 20969,
AJ320530
Halomonas neptunia VP Kaye et al. 2004 Eplumel, AF212202 | ATCC BAA-805 | CECT
5815 | DSM 15720
Halomonas paci?ca VP (Baumann et al. 1972) Dobson and Franzmann 1996 <- Deleya
paci?ca (basonym) 62 | ATCC 27122 | DSM 4742, L42616, Hlm.pacfca
Halomonas pantelleriensis VP Romano et al. 1997 AAP, X93493, Hlm.pantel | ATCC
700273 | DSM 9661
Halomonas salina VP (Valderrama et al. 1991) Dobson and Franzmann 1996 <- De-
leya salina (basonym) F8-11 | ATCC 49509, L42617, Hlm.salina | ATCC 49509,
X87217, Hlm.salin2 | DSM 5928 | IAM 14438
Halomonas subglaciescola VP Franzmann et al. 1987 ACAM 12 | ATCC 43668 | DSM
4683, M93358, Hlm.sglacs | IAM 14167 | UQM 2926
Halomonas sul?daeris VP Kaye et al. 2004 Esul? del, AF212204 | ATCC BAA-803 |
CECT 5817 | DSM 15722
93
Halomonas variabilis VP (Fendrich 1989) Dobson and Franzmann 1996 <- Halovibrio
variabilis (basonym) III | DSM 3051, M93357, Hlm.varbil | IAM 14440, X90483,
Sul.solfa5
Halomonas venusta VP (Baumann et al. 1972) Dobson and Franzmann 1996 <- Deleya
venusta (basonym) 86 | ATCC 27125 | DSM 4743, L42618, Hlm.venust
Genus II. Carnimonas VP
Carnimonas nigri?cans VP (T) Garriga et al. 1998 CECT 4437, Y13299 | CTCBS1
Genus III. Chromohalobacter VP
Chromohalobacter marismortui VP (T) Ventosa et al. 1989 M.G.1.1 | ATCC 17056,
X87219, Ch.marismo | CCM 3518 | DSM 6770 | IAM 14437 | NCIMB 8731
Chromohalobacter canadensis VP (Huval et al. 1996) Arahal et al. 2001 <- Halomonas
canadensis (basonym) HX | ATCC 43984, AJ295143 | CCM 4920 | CECT 5287 |
CIP 105571 | DSM 6769, AF211861 | NCIMB 13766 | NRCC 41227
Chromohalobacter israelensis VP (Huval et al. 1996) Arahal et al. 2001 <- Halomonas
israelensis (basonym) BA1 | ATCC 43985, AJ295144 | CCM 4920 | CECT 5287 |
CIP 106853 | DSM 6768, AF211862 | SAN 6768 | NCIMB 13766
Chromohalobacter salexigens VP Arahal et al. 2001 1H11 | ATCC BAA-138 | CCM 4921
| CECT 5384 | CIP 106854 | DSM 3043, AJ295146 | NCIMB 13768
Genus IV. Cobetia VP

Cobetia marina VP (T) (Cobet et al. 1970) Arahal et al. 2002 <- Deleya marina (basonym)
219 | ATCC 25374 | DSM 4741, AJ306890
Genus V. Deleya VP
Deleya aesta VP (T) (Baumann et al. 1972) Baumann et al. 1983 = Deleya aquamarina
(senior heterotypic synonym) <- Alcaligenes aestus (basonym) 134 | ATCC 27128
Deleya aquamarina VP (ZoBell and Upham 1944) Akagawa and Yamasato 1989 = Al-
caligenes faecalis homari (junior heterotypic synonym) = Deleya aesta (junior het-
erotypic synonym) <- Alcaligenes aquamarinus (basonym) -> Halomonas aqua-
marina ZoBell and Upham 558 | DSM 30161 | NCMB 557
Deleya cupida VP (Baumann et al. 1972) Baumann et al. 1983 <- Alcaligenes cupidus
(basonym) -> Halomonas cupida 79 | ATCC 2712
Deleya halophila VP Quesada et al. 1984 -> Halomonas halophila F5-7 | CCM 3662 |
DSM 4770, M93353
Deleya marina VP (Cobet et al. 1970) Baumann et al. 1983 <- Pseudomonas marina
(basonym) -> Halomonas marina 219 | ATCC 25374, M93354, Hlm.marina
Deleya paci?ca VP (Baumann et al. 1972) Baumann et al. 1983 <- Alcaligenes paci?cus
(basonym) -> Halomonas paci?ca 62 | DSM 4742, L42616
Deleya salina VP Valderrama et al. 1991 -> Halomonas salina F8-11, X87217, L42617
| ATCC 49509
Deleya venusta VP (Baumann et al. 1972) Baumann et al. 1983 <- Alcaligenes venustus
(basonym) -> Halomonas venusta 86
Genus VI. Zymobacter VP
Zymobacter palmae VP (T) Okamoto et al. 1995 T109, D14555, Zyb.palmae | ATCC
51623 | DSM 10491 | IAM 14233
Family V. Oleiphilaceae VP
Genus I. Oleiphilus VP (T)
Oleiphilus messinensis VP (T) Golyshin et al. 2002 ME102, AJ295154 | DSM 13489 |
LMG 20357
Family VI. SaccharospirillaceaeNP
Genus I. Saccharospirillum VP (T)
Saccharospirillum impatiens VP (T) Labrenz et al. 2003 EL-105, AJ315983 | CECT 5721
| DSM 12546
Order IX. Pseudomonadales AL

Family I. Pseudomonadaceae AL
Genus I. Pseudomonas AL (T)
94
Pseudomonas aeruginosa AL (T) (Schroeter 1872) Migula 1900 ATCC 10145 | CCEB 481
| DSM 50071, X06684, Ps.aerugi3 | IBCS 277 | ICPB 2523 | LMG 1242, Z76651,
Ps.aerugi7 | NCIB 8295 | NCTC 10332 | NRRL B-771

Pseudomonas abietaniphila VP Mohn et al. 1999 BKME-9 | ATCC 700689
Pseudomonas acidovorans AL den Dooren de Jong 1926 -> Comamonas acidovorans
KS 0057 | ATCC 15668 | DSM 39 | DSM 50251 | IAM 12409, AB021417 | IMET
10620 | JCM 5833 | NCIB 9681

Pseudomonas agarici AL Young 1970 ATCC 25941, D84005, Ps.agarici | CFBP 2063 |
DSM 11810 | ICMP 2656 | ICPB PA144 | LMG 2112, Z76652, Ps.agaric2 | NCPPB
2289
Pseudomonas alcaligenes AL Monias 1928 ATCC 14909 | DSM 50342 | IMET 11155 |
LMG 1224, Z76653, Ps.alcali2 | NCTC 10367
Pseudomonas alcaliphila VP Yumoto et al. 2001 AL15-21, AB030583 | IAM 14884 |
JCM 10630
Pseudomonas aminovorans AL den Dooren de Jong 1926 -> Aminobacter aminovorans
TK3001 | ATCC 23314 | DSM 7048, AJ011759, Amb.amnvor | JCM 7852 | NCIB
9039 | NCTC 10
Pseudomonas amygdali AL Psallidas and Panagopoulos 1975 = Pseudomonas ?cuserecta
(junior heterotypic synonym) = Pseudomonas meliae (junior heterotypic synonym)
= Pseudomonas savastanoi (junior heterotypic synonym) AL1 | ATCC 33614,
D84007, Ps.amygdal | DSM 7298 | ICMP 3918 | LMG 2123, Z76654, Ps.amygda2 |
NCPPB 2607
Pseudomonas andropogonis AL (Smith 1911) Stapp 1928 -> Burkholderia andropogo-
nis ATCC 23061, X67037, Bur.androp | CFBP 2421 | DSM 9511 | ICMP 2807 | LMG
2129 | NCPPB 934
Pseudomonas anguilliseptica AL Wakabayashi and Egusa 1972 ATCC 33660 | DSM
12111 | NCMB 1949, X99540, Ps.anguill
Pseudomonas antimicrobica VP Attafuah and Bradbury 1990 = Burkholderia gladioli
(senior heterotypic synonym) B | DSM 8361 | NCIB 9898, AB021384
Pseudomonas asplenii AL (Ark and Tompkins 1946) Savulescu 1947 ATCC 23835 |
ICMP 3944 | LMG 2137, Z76655, Ps.aspleni
Pseudomonas aurantiaca AL Nakhimovskaya 1948 NCIB 10068
Pseudomonas aureofaciens AL Kluyver 1956 = Pseudomonas chlororaphis (senior het-
erotypic synonym) ATCC 13985, AF094722
Pseudomonas avellanae VP Janse et al. 1997 F11 | BPIC 631 | DSM 11809 | ICPB 9746 |
NCPPB 3487
Pseudomonas avenae subsp. avenae AL Manns 1909 = Pseudomonas rubrilineans (ju-
nior heterotypic synonym) -> Acidovorax avenae subsp. avenae ATCC 19860,
AF078759, Av.avenave | DSM 7227 | ICMP 3183 | ICPB PA117 | LMG 2117 | NCPPB
1011
Pseudomonas avenae subsp. citrulli VP (Schaad et al. 1978) Hu et al. 1991 <-
Pseudomonas pseudoalcaligenes subsp. citrulli (basonym) -> Acidovorax avenae
subsp. citrulli ATCC 29625, AF078761, Av.avencit | CCUG 17393 | ICMP 7500 |
LMG 5376 | NCPPB 961, AF078762
Pseudomonas avenae subsp. konjaci VP (Goto 1983) Hu et al. 1991 <- Pseudomonas
pseudoalcaligenes subsp. konjaci (basonym) -> Acidovorax konjaci K2 | ATCC
33996, AF078760, Av.konjaci | CCUG 17394 | DSM 7481 | ICMP 7733 | LMG 5691
| PDDCC 7733
Pseudomonas azotoformans AL Iizuka and Komagata 1963 IAM 1603, D84009,

Ps.azotofo
Pseudomonas balearica VP Bennasar et al. 1996 SP1402, U26418, Ps.baleari | DSM
6083
Pseudomonas beijerinckii AL Hof 1935 L 593 | ATCC 19372, AB021386 | DSM 7218 |
NCIB 9041
95
Pseudomonas beteli AL (Ragunathan 1928) Savulescu 1947 = Pseudomonas hibiscicola

(junior heterotypic synonym) = Xanthomonas maltophilia (junior heterotypic syn-
onym) ATCC 19861 | ICMP 2820 | LMG 978
Pseudomonas boreopolis AL Gray and Thornton 1928 NCIB 9401
Pseudomonas brassicacearum VP Achouak et al. 2000 CFBP 11706, AF100321 | DBK
11
Pseudomonas brenneri VP Bada et al. 2002 244 CFML 97-391, AF268968 | CIP 106646
Pseudomonas cannabina VP (ex Sutic and Dowson 1959) Gardan et al. 1999 CFBP
2341 | ICMP 2823 | NCPPB 1437
Pseudomonas carboxydohydrogena VP Meyer et al. 1980 Z-1062 | ATCC 29978 | DSM
1083, AB021393
Pseudomonas caricapapayae AL Robbs 1956 ATCC 33615, D84010, Ps.caripap | CFBP
3204 | NCPPB 1873
Pseudomonas caryophylli AL (Burkholder 1942) Starr and Burkholder 1942 ->
Burkholderia caryophylli PC 113 | ATCC 25418, X67039, Bur.caryph | CCEB 861
| CFBP 2429 | DSM 50341 | ICMP 512 | LMG 2155 | NCPPB 2151 | PDDCC 512
Pseudomonas cattleyae AL (Pavarino 1911) Savulescu 1947 -> Acidovorax avenae

subsp. cattleyae ATCC 33619 | CCUG 21975 | DFBP 2423 | ICMP 2826 | LMG
2364 | LMG 5286 | NCPPB 961, AF078762, Av.avencat
Pseudomonas cedrina VP Dabboussi et al. 2002 245 CFML 96-198, AF064461 | CIP
105541
Pseudomonas cepacia VP Palleroni and Holmes 1981 -> Burkholderia cepacia
717-ICPB 25 | Ballard 717 | Burkholder | ATCC 25416, M22518, Bur.cepaci | ATCC
25416, U96927, Bur.cepac8 | DSM 7288 | ICPB 25 | NCTC 10743
Pseudomonas chloritidismutans VP Wolterink et al. 2002 AW-1, AY017341 | ATCC
BAA-443 | DSM 13592
Pseudomonas chlororaphis AL (Guignard and Sauvageau 1894) Bergey et al. 1930 =
Pseudomonas aureofaciens (junior heterotypic synonym) ATCC 9446 | CCM 1975
| DSM 50083 | ICPB 2392 | NBRC 3904, D86004, Ps.chlrap2 | IMET 10404 | LMG
5004, Z76657, Ps.chlrap3 | NCIB 9392 | NRRL B-560

Pseudomonas cichorii AL (Swingle 1925) Stapp 1928 PC 1 | ATCC 10857 | CFBP 2101 |
DSM 50259 | ICMP 5707 | IMET 11188 | LMG 2162, Z76658, Ps.cichori
Pseudomonas cissicola AL (Takimoto 1939) Burkholder 1948 ATCC 33616, AB021399
| CCM 2888 | NCPPB 2982
Pseudomonas citronellolis AL Seubert 1960 ATCC 13674 | CIP 104381 | DSM 50332,
Z76659, Ps.citrone
Pseudomonas cocovenenans AL van Damme et al. 1960 -> Burkholderia cocovenenans
LMAU P25 | ATCC 33664 | DSM 11318 | LMG 11626, U96934, Bur.gladi4 | NCIB
9450
Pseudomonas corrugata VP Roberts and Scarlett 1981 emend. Sutra et al. 1997 ATCC
29736, D84012, Ps.corruga | CFBP 2431 | DSM 7228 | NCPPB 2445
Pseudomonas costantinii VP Munsch et al. 2002 CFBP 5705 | HAMBI 2444 | PS 3a,
AF374472
Pseudomonas cremoricolorata VP Uchino et al. 2002 246 CC-8 | JCM 11246 | NBRC
16634 | NRIC 0181
Pseudomonas dela?eldii AL Davis 1970 -> Acidovorax dela?eldii FD-6 | Stanier 133 |
ATCC 17505, AF078764, Av.del?di | CCUG 1779 | DSM 64 | LMG 5943
Pseudomonas diminuta AL Leifson and Hugh 1954 -> Brevundimonas diminuta ATCC
11568, M59064, Br.diminu2 | DSM 7234 | IMET 10409
24 4
24 5
24 6
96
Pseudomonas doudorof?i AL Baumann et al. 1972 -> Oceanimonas doudorof? 70 |

ATCC 27123, AB021371 | DSM 7028 | IAM 14168
Pseudomonas echinoides AL Heumann 1962 -> Sphingomonas echinoides ATCC
14820, AB021370 | DSM 1805, AJ012461, Ps.echinoi | DSM 50409 | ICPB 2835
| NCIB 9420
Pseudomonas elongata AL Humm 1946 ATCC 10144, AB021368 | DSM 6810 | LMG
2182 | NCIB 1141
Pseudomonas extremorientalis VP Ivanova et al. 2002 KMM 3447 | LMG 19695,
AF405328
Pseudomonas facilis AL (Schatz and Bovell 1952) Davis 1969 -> Acidovorax facilis
ATCC 11228 | CCUG 2113, AF078765, Av.facilis | DSM 649 | LMG 2193
Pseudomonas ?cuserectae VP Goto 1983 = Pseudomonas amygdali (senior heterotypic
synonym) L7 | ATCC 35104 | CFBP 3224 | DSM 6929 | LMG 5694, Z76661,
Ps.amygda3 | PDDCC 7848
Pseudomonas ?ava AL (Niklewski 1910) Davis 1969 -> Hydrogenophaga ?ava ATCC
33667 | CCUG 1658, AF078771, Hgp.? ava1 | DSM 619 | LMG 2185
Pseudomonas ?avescens VP Hildebrand et al. 1994 B62, U01916, Ps.?avesc | DSM
12071 | NCPPB 3063
Pseudomonas ?ectens AL Johnson 1956 ATCC 12775, AB021400 | ICMP 745 | LMG
2187
Pseudomonas ?uorescens AL Migula 1895 Biovar I | ATCC 13525 | CCEB 546 | DSM
50090, Z76662, Ps.?uore7 | ICPB 3200 | IMET 10619 | NCIB 9046 | NCTC 10038
Pseudomonas fragi AL (Eichholz 1902) Gruber 1905 ATCC 4973, AF094733 | DSM
3456 | IMET 11250 | NRRL B-25
Pseudomonas frederiksbergensis VP Andersen et al. 2000 JAJ28, AJ249382 | DSM
13022
Pseudomonas fulva AL Iizuka and Komagata 1963 IAM 1529, D84015, Ps.fulva1
Pseudomonas fuscovaginae VP Miyajima et al. 1983 6801 | ICMP 5940 | CFBP 2065 |
DSM 7231 | NCPPB 3085 | PDDCC 5940
Pseudomonas gelidicola AL Kadota 1951 IAM 1127
Pseudomonas geniculata AL (Wright 1895) Chester 1901 ATCC 19374, AB021404
Pseudomonas gessardii VP Verhille et al. 1999 CFML 95-251, AF074384 | CIP 105469
Pseudomonas gladioli AL Severini 1913 -> Burkholderia gladioli ATCC 10248,
X67038, Bur.gladi2 | CFBP 2427 | DSM 4285 | ICPB PM 107 | NBRC 13700 |
NCPPB 1891 | NRRL B-793 | PDDCC 3950
Pseudomonas glathei AL Zolg and Ottow 1975 -> Burkholderia glathei ATCC 29195,
Y17052, Bur.glath1 | DSM 50014 | LMG 14190, U96935, Bur.glath2 | LMG 14190,
Y17052, Bur.glath1 | N 15
Pseudomonas glumae AL Kurita and Tabei 1967 -> Burkholderia glumae ATCC 33617
| CFBP 2430 | DSM 7169 | LMG 2196, U96931, Bur.glumae | NCPPB 2981 | NIAES
1169
Pseudomonas graminis VP Behrendt et al. 1999 P 294/08 | DSM 11363, Y11150,
Ps.gramini
Pseudomonas grimontii VP Bada et al. 2002 ATCC BAA-140 | CFML 97-514,
AF268029 | CIP 106645
Pseudomonas halophila VP Fendrich 1989 II | DSM 3050, AB021383
Pseudomonas hibiscicola AL Moniz 1963 = Pseudomonas beteli (senior heterotypic syn-
onym) = Xanthomonas maltophilia (junior heterotypic synonym) ATCC 19867,
AB021405 | ICMP 3945 | LMG 980
Pseudomonas huttiensis AL Leifson 1962 ATCC 14670, AB021366 | DSM 10281
Pseudomonas indica VP Pandey et al. 2002 DSM 14015 | IMT37, AF302795 | MTCC
3713
Pseudomonas indigofera AL (Voges 1893) Migula 1900 -> Vogesella indigofera ATCC
19706, U45995, Crb.indgfr | DSM 3303 | IMET 10724
97
Pseudomonas iners AL Iizuka and Komagata 1964 -> Marinobacterium georgiense

IAM 1419, AB021408
Pseudomonas jessenii VP Verhille et al. 1999 CFML 95-307 | CIP 105274, AF068259
Pseudomonas jinjuensis VP Kwon et al. 2003 Pss 26, AF468448 | KACC 10760 | LMG
21316
Pseudomonas kilonensis VP Sikorski et al. 2001 52020, AJ292426 | CFBP 5372 | DSM
13647
Pseudomonas koreensis VP Kwon et al. 2003 Ps 9-14, AF468452 | KACC 10848 | LMG
21318
Pseudomonas lanceolata AL Leifson 1962 ATCC 14669, AB021390
Pseudomonas lemoignei AL Dela?eld et al. 1965 -> Paucimonas lemoignei ATCC
17989 | DSM 7445 | LMG 2207, X92555, Ps.lemoign
Pseudomonas libanensis VP Dabboussi et al. 1999 CFML 96-195 | CIP 105460,
AF057645
Pseudomonas lini VP Delorme et al. 2002 DLE411J | CFBP 5737, AY035996 | ICMP
14138
Pseudomonas lundensis VP Malin et al. 1986 138 | 573 | ATCC 49968, AB021395 | CCM
3503 | DSM 6252
Pseudomonas luteola VP Kodama et al. 1985 = Chryseomonas luteola (junior homotypic
synonym) = Chryseomonas polytricha (junior heterotypic synonym) G.L. Gilardt
4239 | KS0921 | DSM 6975 | IAM 1300, D84002, Ps.luteola | JCM 3352 247
Pseudomonas mallei AL (Zopf 1885) Redfearn et al. 1966 -> Burkholderia mallei
ATCC 23344, S55000, Bur.mallei
Pseudomonas maltophilia VP Hugh 1981 -> Xanthomonas maltophilia 810-2 | Hugh
810-2 | RH 1168 | Stanier 67 | ATCC 13637, AB008509, Ste.malto2 | ATCC 13637,
M59158, Ste.maltop | DSM 50170 | ICPB 2648-67 | IMET 10402 | LMG 958, X95923
| NCIB 9203 | NCTC 10257
Pseudomonas mandelii VP Verhille et al. 1999 CFML 95-303 | CIP 105273, AF058286
Pseudomonas marginalis AL (Brown 1918) Stevens 1925 ATCC 10844 | CFBP 1387 |
ICMP 3553 | LMG 2210, Z76663, Ps.margina
Pseudomonas marina AL (Cobet et al. 1970) Baumann et al. 1972 -> Deleya marina
219 | ATCC 25374, M93354, Hlm.marina | DSM 4741
Pseudomonas mediterranea VP Catara et al. 2002 CFBP 5447, AF386080 | ICMP 14184
Pseudomonas meliae AL Ogimi 1981 = Pseudomonas amygdali (senior heterotypic syn-
onym) No. 2 | ATCC 33050 | DSM 6759 | ICMP 6289 | LMG 2220 | NCPPB 3033
Pseudomonas mendocina AL Palleroni 1970 CH50 | ATCC 25411, M59154, Ps.mendoci
| DSM 50017 | IMET 11176 | LMG 1223, Z76664, Ps.mendoc7
Pseudomonas mephitica AL Claydon and Hammer 1939 NCIB 9672

Pseudomonas mesophilica AL Austin and Goodfellow 1979 -> Methylobacterium
mesophilicum A 47 | ATCC 29983 | DSM 1708 | ICPB 4095 | NCIB 11561
Pseudomonas migulae VP Verhille et al. 1999 CFML 95-321, AF074383 | CIP 105470
Pseudomonas mixta AL Bowman et al. 1989 -> Telluria mixta ACM 1762, X65589,
Tlr.mixta | ATCC 49108 | DSM 4832 | UQM 1762
Pseudomonas monteilii VP Elomari et al. 1997 CFML 90-60 | CIP 104883, AF064458,
Ps.monteil
Pseudomonas mosselii VP Dabboussi et al. 2002 CFML 90-83 | ATCC BAA-99 | CIP
105259, AF072688
Pseudomonas mucidolens AL Levine and Anderson 1932 ATCC 4685
Pseudomonas multiresinivorans VP Mohn et al. 1999 IpA-1 | ATCC 700690
Pseudomonas nautica AL Baumann et al. 1972 = Marinobacter hydrocarbonoclasticus
(senior heterotypic synonym) 179 | ATCC 27132, AB019148, Mrb.hycla4 | DSM
50418 | ICPB 3529
24 7
Th e ne w comb ina tio n Ch ryseomo nas luteo la was prop ose d by H olm es et al. (19 87). Su bse quen tly, Anz ai et all rep orted that 16S rRNA
sim ilarity be tween C. lut eola an d P se udom ona s aeruginosa is 94 % . Bas ed on thes e re sults , th es e au thors prop ose d th at C . lu teola sho uld
be consid ered a jun ior synon ym o f P se udom ona s lut eola.
98
Pseudomonas nitroreducens AL Iizuka and Komagata 1964 IAM 1439, D84021, Ps.ni-
trred
Pseudomonas oleovorans AL Lee and Chandler 1941 ATCC 8062 | DSM 1045, Z76665,
Ps.oleovo2 | NCIB 6576 | NCTC 10692 | NCTC 6576
Pseudomonas orientalis VP Dabboussi et al. 2002 248 CFML 96-170, AF064457 | CIP
105540
Pseudomonas oryzihabitans VP Kodama et al. 1985 = Flavimonas oryzihabitans (junior
homotypic synonym) 249 AJ 2197 | KS 0036 | L-1 | ATCC 43272 | DSM 6835 | IAM
1568, D84004, Fm.oryzhab | JCM 2942
Pseudomonas palleroniana VP Gardan et al. 2002 CFBP 4389, AY091527 | ICMP 14253
| NCPPB 4278
Pseudomonas palleronii AL Davis 1970 -> Hydrogenophaga palleronii Stanier 362

| Stanier 362t1 | ATCC 17724 | CCUG 20334, AF078769 | DSM 63, AF019073,
Hgp.paller | LMG 2366t1

Pseudomonas parafulva VP Uchino et al. 2002 250 CB-1 | AJ 2129 | NBRC 16636 | JCM
11244 | NRIC 0501
Pseudomonas paucimobilis AL Holmes et al. 1977 -> Sphingomonas paucimobilis
ATCC 29837, U20776, Spg.pauci6 | ATCC 29837, U37337, Spg.pauci8 | CL 1/70
| DSM 1098, X72722, Spg.paucim | GIFU 2395, D16144 | JCM 7516 | LMG 1227 |
NCPPB 3838 | NCTC 11030

Pseudomonas perfectomarina VP Baumann et al. 1983 = Pseudomonas stutzeri (senior
heterotypic synonym) 218 | ATCC 14405
Pseudomonas pertucinogena AL Kawai and Yabuuchi 1975 ATCC 190
Pseudomonas phenazinium AL Bell and Turner 1973 -> Burkholderia phenazinium 1A
| ATCC 33666 | DSM 10684 | LMG 2247, U96936, Bur.phenaz | NCIB 11027
Pseudomonas pickettii AL Ralston et al. 1973 -> Burkholderia pickettii K-288 | ATCC
27511, S55004, Ral.picket | CIP 73.23 | DSM 6297 | JCM 5969 | NCTC 11149
Pseudomonas pictorum AL Gray and Thornton 1928 ATCC 23328, AB021392
Pseudomonas plantarii VP Azegami et al. 1987 -> Burkholderia plantarii ATCC
43733 | AZ 8201 | DSM 9509 | ICMP 9424 | JCM 5492 | LMG 9035, U96933,
Bur.planta | NIAES 1723
Pseudomonas plecoglossicida VP Nishimori et al. 2000 ATCC 700383 | FPC 951,
AB009457
Pseudomonas pseudoalcaligenes subsp. pseudoalcaligenes AL Stanier 1966 X-59 |
ATCC 17440 | DSM 50188 | ICPB 2750-63 | IMET 11177 | JCM 5968 | LMG 1225,
Z76666, Av.avenci2 | NCIB 9946 | NCTC 10860
Pseudomonas pseudoalcaligenes subsp. citrulli AL Schaad et al. 1978 -> Pseudomonas
avenae subsp. citrulli ATCC 29625, AF078761, Av.avencit | CCUG 17393 | ICMP
7500 | LMG 5376 | NCPPB 961, AF078762
Pseudomonas pseudoalcaligenes subsp. konjaci VP Goto 1983 -> Pseudomonas ave-
nae subsp. konjaci ATCC 33996, AF078760, Av.konjaci | CCUG 17394 | DSM
7481 | ICMP 7733 | K2 | LMG 5691 | PDDCC 773
Pseudomonas pseudo?ava AL Auling et al. 1978 -> Hydrogenophaga pseudo?ava
GA3 | ATCC 33668, AF078770, Hgp.ps?av | CCUG 13799 | DSM 1034 | LMG 5945
Pseudomonas pseudomallei AL (Whitmore 1913) Haynes 1957 -> Burkholderia pseu-
domallei ATCC 23343 | WRAIR 286
Pseudomonas psychrophila VP Yumoto et al. 2002 251 E-3, AB041885 | JCM 10889
24 8
24 9
The ne w co mbination Flavimo nas oryzih abitans was propos ed b y Ho lme s e t al. (1987 ). Su bs eque ntly, Anz ai et al. repo rt ed tha t 16S
rRNA sim ilarity betwe en F. oryzihabitans and P seu dom onas aeruginos a is 93.9% . B as ed on thes e res ults , the se au thors prop os ed that F.
oryzihab itan s sh ould b e considered a junior synonym of Ps eudo mon as ory zihabitan s.
25 0
25 1
99
Pseudomonas putida AL (Trevisan 1889) Migula 1895 = Arthrobacter siderocapsula-

tus (junior heterotypic synonym) Biovar A, Z76667, Ps.putid10 | ATCC 12633,
D37923, Ps.putida3 | DSM 291 | DSM 50202 | ICPB 2963 | NCTC 10936
Pseudomonas pyrrocinia AL Imanaka et al. 1965 -> Burkholderia pyrrocinia 2327 |
ATCC 15958 | DSM 10685 | LMG 14191, U96930, Bur.pyrroc
Pseudomonas radiora AL Ito and Iizuka 1971 -> Methylobacterium radiotolerans 0-1
| ATCC 27329 | CIP 101128 | DSM 1819 | IAM 12098 | NBRC 15690 | JCM 2831,
D32227, Mlb.radtol | LMG 2269 | NCIB 10815

Pseudomonas resinovorans AL Delaporte et al. 1961 ATCC 14235 | CCUG 4439 | CIP
61.9 | LMG 2274, Z76668, Ps.resinov | NCIB 9280
Pseudomonas rhizosphaerae VP Peix et al. 2003 IH5, AY152673 | CECT 5726 | LMG
21640
Pseudomonas rhodesiae VP Coroler et al. 1997 CIP 104664, AF064459, Ps.rhodesi
Pseudomonas rhodos AL Heumann 1962 -> Methylobacterium rhodinum ATCC 14821
| DSM 2163 | JCM 2811, D32229 | NCIB 9421, L20849, Mlb.rhodin
Pseudomonas rubrilineans AL (Lee et al. 1925) Stapp 1928 = Pseudomonas avenae

subsp. avenae (senior heterotypic synonym) ATCC 19307, AB021421
Pseudomonas rubrisubalbicans AL (Christopher and Edgerton 1930) Krassilnikov 1949
-> Herbaspirillum rubrisubalbicans ATCC 19308, AB021424, AB021424 | DSM
9440 | LMG 2286 | NCPPB 1027
Pseudomonas saccharophila AL Doudoroff 1940 ATCC 15946 | DSM 654, AB021407
Pseudomonas salomonii VP Gardan et al. 2002 CFBP 2022, AY091528 | ICMP 14252 |
NCPPB 4277
Pseudomonas savastanoi VP (ex Smith 1908) Gardan et al. 1992 <- Pseudomonas sy-
ringae subsp. savastanoi (basonym) = Pseudomonas amygdali (senior heterotypic
synonym) ATCC 13522, AB021402 | CFBP 1 | ICMP 4352 | NCPPB 639
Pseudomonas solanacearum AL (Smith 1896) Smith 1914 -> Burkholderia
solanacearum 60-1 | ATCC 11696, X67036, Ral.solan2 | CFBP 2047 | DSM
9544 | ICMP 5712 | ICPB PS 256 | NCPPB 325
Pseudomonas spinosa AL Leifson 1962 83 | ATCC 14606, AB021387
Pseudomonas stanieri VP Baumann et al. 1983 = Marinobacterium stanieri (het-
erotypic synonym) 146 | ATCC 27130, AB021367 | DSM 7027
Pseudomonas straminea AL Iizuka and Komagata 1963 IAM 1598, D84023, Ps.stramin
Pseudomonas stutzeri AL (Lehmann and Neumann 1896) Sijderius 1946 = Pseudomonas
perfectomarina (junior heterotypic synonym) AB201 | ATCC 17588 | CCUG
11256, U26262, Ps.stutzer | DSM 5190 | LMG 2333 | NCIB 11358 | NCPPB 1973
Pseudomonas synxantha AL (Ehrenberg 1840) Holland 1920 ATCC 9890 | CCEB 293 |
NRRL B-780
Pseudomonas syringae subsp. syringae AL van Hall 1902 ATCC 19310, D84026,
Ps.syring5 | CFBP 1392 | DSM 6693 | ICMP 3023 | LMG 1247, Z76669, Ps.syring6 |
NCPPB 281 | PDDCC 3023
Pseudomonas syringae subsp. savastanoi VP (ex Smith) Janse 1982 -> Pseudomonas
savastanoi ATCC 13522, AB021402 | DSM 50298 | ICMP 4352 | NCPPB 639
Pseudomonas syzygii VP Roberts et al. 1990 -> Ralstonia syzygii R001, U28237,
Ps.syzygi2 | ATCC 49543 | DSM 7385 | ICMP 1091 | NCPPB 3445 | NCPPB 3446
Pseudomonas taeniospiralis VP Lalucat et al. 1982 -> Hydrogenophaga taeniospiralis
2K1 | ATCC 49743, AF078768, Hgp.taensp | DSM 2082
Pseudomonas taetrolens AL Haynes 1957 A.3.19 | Stanier 92 | ATCC 4683 | CCEB 381 |
IAM 1653, D84027, Ps.taetrol | NCIB 9396 | NRRL B-14
Pseudomonas testosteroni AL Marcus and Talalay 1956 -> Comamonas testosteroni
KS 0043 | ATCC 11996, M11224, Com.testos | DSM 50244 | IAM 12419 | ICPB
2741-78 | JCM 5832 | NCIB 8955

Pseudomonas thermotolerans VP Manaia and Moore 2002 CM3, AJ311980 | DSM
14292 | LMG 21284
Pseudomonas thivervalensis VP Achouak et al. 2000 SBK26 | CFBP 11261, AF100323
100
Pseudomonas tolaasii AL Paine 1919 ATCC 33618, D84028, Ps.tolaasi | CFBP 2068 |
LMG 2342, Z76670, Ps.tolaas2 | NCPPB 2192 | PDDCC 2290
Pseudomonas tremae VP Gardan et al. 1999 CFBP 3229 | ICMP 9151 | NCPPB 3465
Pseudomonas umsongensis VP Kwon et al. 2003 Ps 3-10, AF468450 | KACC 10847 |
LMG 21317
Pseudomonas vancouverensis VP Mohn et al. 1999 DhA-51 | ATCC 700688
Pseudomonas veronii VP Elomari et al. 1996 CFML 92-134 | CIP 104663, AF064460,
Ps.veronii | DSM 11331
Pseudomonas vesicularis AL (Busing et al. 1953) Galarneault and Leifson 1964 -> Bre-
vundimonas vesicularis ACM 2862 | ATCC 11426, AJ007801, Br.vesicu1 | CCM
3398 | CCUG 2032 | CECT 327 | DSM 7226 | IAM 12105, AB021414 | JCM 1477 |
LMG 2350, AJ227780, Br.vesicu2 | NCMB 1945 | NCTC 10900
Pseudomonas viridi?ava AL (Burkholder 1930) Dowson 1939 ATCC 13223 | CFBP 2107
| DSM 6694 | ICMP 2848 | LMG 2352, Z76671, Ps.viridif
Pseudomonas woodsii AL (Smith 1911) Stevens 1925 = Burkholderia andropogonis

(senior heterotypic synonym) ATCC 19311, AB021422 | DSM 44247 | DSM 9884
| NCPPB 968
Genus II. Azomonas AL

Azomonas agilis AL (T) (Beijerinck 1901) Winogradsky 1938 ATCC 7494 | DSM 375
Azomonas insignis AL (Derx 1951) Jensen 1955 UQM 1966
Azomonas macrocytogenes VP (Jensen 1955) New and Tchan 1982 <- Azomonotrichon
macrocytogenes (basonym) Jensen O | WR 111 | ATCC 12335 | NCIB 8700
Genus III. Azotobacter AL
Azotobacter chroococcum AL (T) Beijerinck 1901 43 | ATCC 9043 | DSM 2286 | VKM
B-1616
Azotobacter armeniacus VP Thompson and Skerman 1981 DSM 2284 | Kirakosyan N28
| WR-136
Azotobacter beijerinckii AL Lipman 1904 M.B. 2.3 | ATCC 19360 | DSM 378 | NCIB 8948
| VKM B-1615
Azotobacter macrocytogenes AL Jensen 1955 -> Azomonotrichon macrocytogenes

Jensen O | ATCC 12335 | DSM 721 | NCIB 8700 | WR 111
Azotobacter nigricans subsp. nigricans AL Krassilnikov 1949 DSM 2288 | UQM 1967
Azotobacter nigricans subsp. achromogenes VP Thompson and Skerman 1981 A-2 of
Jensen | WR-41
Azotobacter paspali AL Dbereiner 1966 -> Azorhizophilus paspali WR-129 | ATCC
23833 | DSM 2283
Azotobacter salinestris VP Page and Shivprasad 1991 184 | ATCC 49674 | DSM 11553
Azotobacter vinelandii AL Lipman 1903 16 | ATCC 478 | DSM 2289
Genus IV. Cellvibrio VP
Cellvibrio mixtus subsp. mixtus VP (T) Blackall et al. 1986 DSM 9528 | UQM 2601
Cellvibrio mixtus subsp. dextranolyticus VP Blackall et al. 1986 UQM 1666
Cellvibrio ?brivorans VP Mergaert et al. 2003 R4079, AJ289164 | ACM 5172 | LMG
18561
Cellvibrio fulvus (ex Stapp and Bortels 1934) Humphry et al. 2003 nom. rev. LMG
2847 | NCIMB 8634, AF448514
Cellvibrio gandavensis VP Mergaert et al. 2003 R4069, AJ289162 | ACM 5174 | LMG
18551
Cellvibrio japonicus VP Humphry et al. 2003 NCDO 2697 | NCIMB 10462, AF452103
Cellvibrio ostraviensis VP Mergaert et al. 2003 ACM 5173 | LMG 19434, AJ493583
Cellvibrio vulgaris (ex Stapp and Bortels 1934) Humphry et al. 2003 nom. rev. LMG
2848 | NCIMB 8633, AF448513
Genus V. Chryseomonas VP
Chryseomonas polytricha VP (T) Holmes et al. 1986 = Pseudomonas luteola (senior
heterotypic synonym) E2770 | NCTC 11843
101
Chryseomonas luteola VP (Kodama et al. 1985) Holmes et al. 1987 = Pseudomonas

luteola (senior homotypic synonym) KS 0921 | ATCC 43273 | DSM 6975 | IAM
1300, D84002, Ps.luteola | JCM 3352 252
Genus VI. Flavimonas VP
Flavimonas oryzihabitans VP (T) (Kodama et al. 1985) Holmes et al. 1987 = Pseu-
domonas oryzihabitans (senior homotypic synonym) AJ 2197 | KS0036 | L-1 | DSM
6835 | IAM 1568, D84004, Fm.oryzhab | JCM 295 253
Genus VII. Mesophilobacter VP
Mesophilobacter marinus VP (T) Nishimura et al. 1989 14S-4 | DSM 9142 | IAM 13185
Genus VIII. Rhizobacter VP
Rhizobacter dauci VP (T) Goto and Kuwata 1988 H6 | ATCC 43778 | DSM 11587 | ICMP
9400 | LMG 9036
Genus IX. Rugamonas VP
Rugamonas rubra VP (T) Austin and Moss 1987 MOM 28/2/79 | ATCC 43154 | CCM 3730
Genus X. Serpens AL
Serpens ?exibilis AL (T) Hespell 1977 PFR-1 | ATCC 29606
Family II. Moraxellaceae VP 254
Genus I. Moraxella AL (T) 255
Moraxella lacunata AL (T) (Eyre 1900) Bovre 1979 Morax 260 | ATCC 17967,
AF005170, AF005160, D64049 | NCTC 11011 256
Moraxella anatipestifer AL (Henrickson and Hilbert 1932) Bruner and Fabricant 1954
-> Riemerella anatipestifer ATCC 11845, U10877, Rie.anati2 | ATCC 11845,
U60101, Rie.anati3 | LMG 11054 | MCCM 00568
Moraxella atlantae AL (Bovre et al. 1976) Bovre 1979 5118 | ATCC 29525 | NCTC 11091
Moraxella boevrei VP Kodjo et al. 1997 88365 | ATCC 700022 | CCUG 35435 | CIP
104716 | NCTC 12925
Moraxella bovis AL (Hauduroy et al. 1937) Bovre 1979 ATCC 10900, AF005182,
Mrx.bovis1
Moraxella canis VP Jannes et al. 1993 N7 | CCUG 8415A | LMG 11194, AJ269511
Moraxella caprae VP Kodjo et al. 1995 8897 | CCUG 33297 | NCTC 12877
Moraxella catarrhalis AL (Frosch and Kolle 1896) Bovre 1979 <- Branhamella
catarrhalis (basonym) ATCC 25238, AF005185, U10876 | DSM 9143 | NCTC
11020
Moraxella caviae AL (Pelczar 1953) Bovre 1979 = Neisseria caviae (homotypic syn-
onym) GP 11 | ATCC 14659 | CCUG 2132 | CCUG 355, AF005187, Mrx.cavia2 |
NCTC 10293
Moraxella cuniculi VP (Berger 1962) Boevre and Hagen 1984 <- Neisseria cuniculi (ba-
sonym) ATCC 14688
Moraxella equi AL Hughes and Pugh 1970 ATCC 25576
Moraxella lincolnii VP Vandamme et al. 1993 CCUG 9405 | LMG 5127
Moraxella nonliquefaciens AL (Scarlett 1916) Bovre 1979 4663/62 | ATCC 19975 |
NCTC 10464
Moraxella osloensis AL (Bovre and Henriksen 1967) Bovre 1979 A1920 | ATCC 19976
| NCTC 10465
Moraxella ovis AL (Lindquist 1960) Bovre 1968 = Neisseria ovis (homotypic synonym)
199/55 | ATCC 33078, AF005186 | NCTC 11227
25 2
Th e n ew com bin ation C hryseom onas lute ola was p ro pos ed by Holme s et a l. (198 7). Su bse que ntly, An zai e t al. repo ted that 16S rRNA
sim ilarity b etwee n C. luteo la and P seu dom onas a eruginos a was 94 % . B as ed on thes e re su lts , thes e authros propos ed tha t C. luteola is a
junior syn onym of Pseu dom onas lute ola .
25 3
The ne w co mbination Flavimo nas oryzih abitans was propos ed b y Ho lme s e t al. (1987 ). Su bs eque ntly, Anz ai et al. repo rt ed tha t 16S
rRNA similarity b etwee n F. o ryziha bit ans and P seudo mona s a eruginos a was 93 .9% . B as ed on thes e res ult s, th es e aut hors p ro pos ed th at F.
oryzihab itan s is a junior synonym of Pseud omo nas o ryziha bita ns .
25 4
The position o f Moraxella cea e in Pseud omon adales might b e ca lled into q ues tio n. Lu dwig note s th at the pla cem ent o f this g enus in trees
is meth od d epe nden t. In PCA plots it m aps to the same gen eral lo cat ion as P se udom ona s
25 5
The subge nera Mo ra xe lla (M oraxella Lwo ff 1 939) B vre 198 4 and M oraxe lla (Branh amella Catlin 19 70) Bv re 1984 h ave been v alid ly
pu blish ed but are n ot use d in this outline . Moraxella (Moraxella) co ntains M. atlanta e, M. bov is , M. lac una ta, M. non liquefa ciens , M. os loe nsis ,
an d M . ph enylpyruvica; Moraxella (Branh amella ) co ntains M. c atarrhalis , M . c av iae , a nd M . o vis.
25 6
Jun i indica tes that the t ype ma terial for M oraxella lacunat a s ubs p. lac unat a is a ctu ally a s train of M. lac un ata s ubs p. liquifac ie ns.
102
Moraxella phenylpyruvica AL (Bovre and Henriksen 1967) Bovre 1979 -> Psychrobac-
ter phenylpyruvicus 2863 | ATCC 23333 | NCTC 10526
Moraxella saccharolytica AL Flamm 1956 ATCC 19245
Moraxella urethralis AL Lautrop et al. 1970 -> Oligella urethralis ATCC 17960,
AF227163 | CCUG 13463 | DSM 7531 | LMG 5303
Genus II. Acinetobacter AL
Acinetobacter calcoaceticus AL (T) (Beijerinck 1911) Baumann et al. 1968 ATCC 23055,
Z93434, Acn.calco6 | CIP 81.08 | DSM 30006, X81661, Acn.calco4
Acinetobacter baumannii VP Bouvet and Grimont 1986 ATCC 19606 | CIP 70.34 | DSM
30007, X81660, Acn.bauman
Acinetobacter baylyi VP Carr et al. 2003 B2, AF509820 | CIP 107474 | DSM 14961
Acinetobacter bouvetii VP Carr et al. 2003 4B02, AF509827 | CIP 107468 | DSM 14964
Acinetobacter gerneri VP Carr et al. 2003 9A01, AF509829 | CIP 107464 | DSM 14967
Acinetobacter grimontii VP Carr et al. 2003 17A04, AF509828 | CIP 107470 | DSM
14968
Acinetobacter haemolyticus VP Bouvet and Grimont 1986 B40 | Mannheim 2446/60 |
ATCC 17906 | CIP 64.3 | DSM 6962, X81662, Acn.haemol | NCTC 10305
Acinetobacter johnsonii VP Bouvet and Grimont 1986 B8 | Mannheim 3865/60 | ATCC
17909 | CIP 64.6 | DSM 6963, X81663, Acn.johnsn | NCTC 10308
Acinetobacter junii VP Bouvet and Grimont 1986 B10 | Mannheim 2723/59 | ATCC
17908 | CIP 64.5 | DSM 6964, X81664, Acn.junii | NCTC 10307
Acinetobacter lwof?i AL (Audureau 1940) Brisou and Prvot 1954 emend. Bouvet and
Grimont 1986 ATCC 15309 | CIP 644.10 | DSM 2403, X81665, Acn.lwoff4 | IMET
10416 | NCTC 5866
Acinetobacter radioresistens VP Nishimura et al. 1988 FO-1 | ATCC 43998 | DSM 6976,
X81666, Acn.radres | IAM 13186
Acinetobacter schindleri VP Nemec et al. 2001 LUH 5832, AJ278311 | CNCTC 6736 |
LMG 19576 | NIPH 1034
Acinetobacter tandoii VP Carr et al. 2003 4N13, AF509830 | CIP 107469 | DSM 14670
Acinetobacter tjernbergiae VP Carr et al. 2003 7N16, AF509825 | CIP 107465 | DSM
14971
Acinetobacter towneri VP Carr et al. 2003 AB1110, AF509823 | CIP 107472 | DSM
14962
Acinetobacter ursingii VP Nemec et al. 2001 LUH 3792, AJ275038 | CNCTC 6735 |
LMG 19575 | NIPH 137
Genus III. Psychrobacter VP
Psychrobacter immobilis VP (T) Juni and Heym 1986 14 | A351 | ATCC 43116, U39399,
Psy.immobl | CCUG 9708 | DSM 7229 | LMG 7091 | LMG 7203 | NCIB 12350
Psychrobacter faecalis VP Kmpfer et al. 2002 Iso-46, AJ421528 | CIP 107288 | DSM
14664
Psychrobacter fozii VP Bozal et al. 2003 NF23, AJ430827 | CECT 5889 | LMG 21280
Psychrobacter frigidicola VP Bowman et al. 1996 ACAM 304, U46143, Psy.frgdcl |
CCUG 34377
Psychrobacter glacincola VP Bowman et al. 1997 ACAM 483, U46145, Psy.glacin |
DSM 12194
Psychrobacter jeotgali VP Yoon et al. 2003 YKJ-103, AF441201 | JCM 11463 | KCCM
41559
Psychrobacter luti VP Bozal et al. 2003 NF11, AJ430828 | CECT 5885 | LMG 21276
Psychrobacter marincola VP Lyudmila et al. 2002 KMM 277, AJ309941 | DSM 14160 |
Psychrobacter okhotskensi VP Yumoto et al. 2003 MD17, AB094794 | JCM 11840 |
NCIMB 13931
Psychrobacter paci?censis VP Maruyama et al. 2000 NBRC 16270, AB016057 | NIBH
P2K6
103
Psychrobacter phenylpyruvicus VP (Bovre and Henriksen 1967) Bowman et al. 1996

<- Moraxella phenylpyruvica (basonym) ACAM 535 | ACM 886 | ATCC 23333,
U46144, Psy.phpyru | CCUG 351 | DSM 7000 | NCTC 105 257
Psychrobacter proteolyticus VP Denner et al. 2001 116, AJ272303 | CIP 106830 | DSM
13887
Psychrobacter pulmonis VP Vela et al. 2003 CCUG 46240 | CECT 5989, AJ437696 |
S-606
Psychrobacter submarinus VP Lyudmila et al. 2002 KMM 225, AJ309940 | DSM 14161
Psychrobacter urativorans VP Bowman et al. 1996 B-57 | ACAM 534 | ATCC 15174,
U46141, Psy.uratov | CCM 900 | CCUG 4982 | DSM 20429
Family III. Incertae sedis
Genus I. Enhydrobacter VP
Enhydrobacter aerosaccus VP (T) Staley et al. 1987 ATCC 27094, AJ550856 | DSM 8914
Order X. Alteromonadales" 258
"
Family I. Alteromonadaceae VP
Genus I. Alteromonas AL (T)
Alteromonas macleodii AL (T) (Baumann et al. 1972) emend. Yi et al. 2004 107, Y18228
| ATCC 27126 | DSM 6062
Alteromonas atlantica VP Akagawa-Matsushita et al. 1992 -> Pseudoalteromonas at-

lantica ATCC 19262 | DSM 6839 | IAM 12927, X82134, Pal.atlant | LMG 2138 |
NCIMB 301
Alteromonas aurantia AL Gauthier and Breittmayer 1979 -> Pseudoalteromonas au-
rantia Cerbom 208 | ATCC 33046, X82135, Pal.aurant | DSM 6057 | NCIMB 2052
Alteromonas carrageenovora VP Akagawa-Matsushita et al. 1992 -> Pseudoal-
teromonas carrageenovora ATCC 43555 | DSM 6820 | IAM 12662, X82136,
Pal.carrag | NBRC 12985 | NCIMB 302
Alteromonas citrea AL Gauthier 1977 -> Pseudoalteromonas citrea ATCC 29719 | DSM
6058 | NCIMB 1889, X82137, Pal.citrea
Alteromonas colwelliana VP Weiner et al. 1988 -> Shewanella colwelliana LST-W |
ATCC 39565
Alteromonas communis AL Baumann et al. 1972 -> Marinomonas communis ATCC
27118 | DSM 5604 | LMG 2864
Alteromonas denitri?cans VP Enger et al. 1987 -> Pseudoalteromonas denitri?cans
Nygaard 1977 | ATCC 43337, X82138, Pal.denitr | DSM 6059 | IAM 14445
Alteromonas distincta VP Romanenko et al. 1995 -> Pseudoalteromonas distincta
KMM 638, AF082564, Altm.disti | ATCC 700518
Alteromonas elyakovii VP Ivanova et al. 1997 -> Pseudoalteromonas elyakovii 40MC
| ATCC 700519 | KMM 162, AF082562, Altm.elyak | VKPM B3905
Alteromonas espejiana AL Chan et al. 1978 -> Pseudoalteromonas espejiana ATCC

29659 | CCUG 16147 | DSM 9414 | IAM 12640 | NCIMB 2127, X82143, Pal.espeji
Alteromonas fuliginea VP Romanenko et al. 1995 KMM 216 | KMM 216, AF082563,
Pal.citre2
Alteromonas haloplanktis AL (ZoBell and Upham 1944) Reichelt and Baumann 1973
-> Pseudoalteromonas haloplanktis subsp. haloplanktis ATCC 14393, X67024,
Pal.halopl | DSM 6060
Alteromonas hanedai VP Jensen et al. 1981 -> Shewanella hanedai 281 | ATCC 33224
| DSM 6066
Alteromonas luteoviolacea VP Gauthier 1982 -> Pseudoalteromonas luteoviolacea

CH130 | ATCC 33492 | DSM 6061 | NCMB 1893, X82144, Pal.luteov
Alteromonas nigrifaciens VP (ex White 1940) Baumann et al. 1984 emend. Ivanova et
al. 1996 -> Pseudoalteromonas nigrifaciens 217 | ATCC 19375 | DSM 6063
25 7
Ju ni a rg ues that th ere are signi?can t bio log ical d ifferen ces tha t sug ges t Ps yc hrob ac ter p heny lpyruv icus (Morax ella p heny lp yruv ic us ) is
mispla ced an d p ro bab ly wa rran ts eleva tio n to a separat e, new genu s.
25 8
Lu dwig in dicate s tha t the A eromo nada les , A lte ro mona dales , Ente ro bac teria les , P ast eurellales , and V ib riona les clus ter tog ether in both
the A RB a nd RDP t re es.
104
Alteromonas putrefaciens VP (ex Derby and Hammer) Lee et al. 1981 -> Shewanella
putrefaciens Hammer 95 | ATCC 8071, X82133, She.putre3 | DSM 6067 | ICPB 352
| NCIB 10471
Alteromonas rubra AL Gauthier 1976 -> Pseudoalteromonas rubra ATCC 29570,

X82147, Pal.rubra | DSM 6064
Alteromonas tetraodonis VP Simidu et al. 1990 -> Pseudoalteromonas haloplanktis
subsp. tetraodonis GFC | ATCC 51193 | DSM 9166 | IAM 14160, X82139, Pal.hal-
tet | NCIMB 13177
Alteromonas undina AL Chan et al. 1978 -> Pseudoalteromonas undina 272 | ATCC
29660 | DSM 6065
Alteromonas vaga AL Baumann et al. 1972 -> Marinomonas vaga ATCC 27119,
X67025, Mrm.vaga2 | CCUG 16047 | CIP 74.02 | DSM 5605 | LMG 2845 | NCMB
1962
Genus II. Aestuariibacter VP
Aestuariibacter halophilus VP Yi et al. 2004 JC2043, AY207503 | IMSNU 14007 | KCTC
12043 | DSM 15266,
Aestuariibacter salexigens VP Yi et al. 2004 JC2042, AY207502 | IMSNU 14006 | KCTC
12042 | DSM 15300
Genus III. Alishewanella VP
Alishewanella fetalis VP (T) Fonnesbech Vogel et al. 2000 Uppsala R2422019,
AF144407 | ATCC BAA-284 | CCUG 30811 | CIP 106648
Genus IV. Colwellia VP
Colwellia psychrerythrea VP (T) Deming et al. 1988 ATCC 27364, AB011364,
Clw.peryt3 | ATCC 27364, AF001375, Clw.peryt2 | DSM 8813
Colwellia demingiae VP Bowman et al. 1998 ACAM 459, U85845
Colwellia hadaliensis VP Deming et al. 1988 BNL-1
Colwellia hornerae VP Bowman et al. 1998 ACAM 607, U85847
Colwellia maris VP Yumoto et al. 1998 ABE-1, AB002630, Clw.maris1 | JCM 10085
Colwellia psychrotropica VP Bowman et al. 1998 ACAM 179, U85846, Clw.psytrp
Colwellia rossensis VP Bowman et al. 1998 ACAM 608, U14581
Genus V. Ferrimonas VP
Ferrimonas balearica VP (T) Rossell-Mora et al. 1996 PAT, X93021, Frm.balear | DSM
9799
Genus VI. Glaciecola VP
Glaciecola punicea VP (T) Bowman et al. 1998 ACAM 611, U85853
Glaciecola mesophila VP Romanenko et al. 2003 DSM 15026 | KMM 241, AJ488501
Glaciecola pallidula VP Bowman et al. 1998 ACAM 615, U85854
Genus VII. Idiomarina VP
Idiomarina abyssalis VP (T) Ivanova et al. 2000 KMM 227, AF052740
Idiomarina baltica VP Brettar et al. 2003 OS145, AJ440214 | DSM 15154 | LMG 21691
Idiomarina loihiensis VP Donachie et al. 2003 L2-TR | ATCC BAA-735, AF288370 |
DSM 15497
Idiomarina zobellii VP Ivanova et al. 2000 KMM 231, AF052741
Genus VIII. Marinobacter VP 259
Marinobacter hydrocarbonoclasticus VP (T) Gauthier et al. 1992 = Pseudomonas nautica
(junior heterotypic synonym) SP.17 | ATCC 49840, X67022, Mrb.hyclas | DSM
8798
Marinobacter aquaeolei VP Nguyen et al. 1999 VT8, AJ000726, Mrb.aquaeo | ATCC
700491 | DSM 11845
Marinobacter excellens VP Gorshkova et al. 2003 CIP 107686 | KMM 3809, AY180101
Marinobacter litoralis VP Yoon et al. 2003 SW-45, AF479689 | JCM 11547 | KCCM
41591
25 9
Heatm ap an alysis o f t he Alteromo nada les (Ga rrity and L ilburn, un publis hed ) s ugg est s tha t M arino bac ter, M arino bac teriu m and M ic ro b-
ulbifer a re likely not me mbers o f t he Alteromo nada ce ae.
105
Marinobacter lutaoensis VP Shieh et al. 2003 T5054, AF288157 | BCRC/CCRC 17087,

AF288157 | JCM 11179, AF288157
Genus IX. Marinobacterium VP 260
Marinobacterium georgiense VP (T) (Gonzlez et al. 1997) Satomi et al. 2002 =
Pseudomonas iners (senior heterotypic synonym) KW-40, U58339, Mba.georgn
| ATCC 700074 | CIP 10.5236 | DSM 11526
Marinobacterium jannaschii VP (Bowditch et al. 1984) Satomi et al. 2002 261 <-
Oceanospirillum jannaschii (basonym) 207, AB006765 | ATCC 27135 | NBRC
15466
Marinobacterium stanieri VP (Baumann et al. 1983) Satomi et al. 2002 262 <- Pseu-
domonas stanieri (basonym) 146 | ATCC 27130, AB021367
Genus X. Microbulbifer VP 263
Microbulbifer hydrolyticus VP (T) Gonzlez et al. 1997 IRE-31, U58338, Mbf.hylyts |
ATCC 700072 | CIP 105235 | DSM 11525
Microbulbifer salipaludis VP Yoon et al. 2003 SM-1, AF479688 | JCM 11542 | KCCM
41586
Genus XI. Moritella VP
Moritella marina VP (T) (Baumann et al. 1984) Urakawa et al. 1999 <- Vibrio marinus
(basonym) ATCC 15381, X74709, Mrt.marin3
Moritella abyssi VP Xu et al. 2003 2693, AJ252022 | JCM 11436 | LMG 21258
Moritella japonica VP Nogi et al. 1999 DSK1, D21224, Mrt.japoni | JCM 10249
Moritella profunda VP Xu et al. 2003 2674, AJ252023 | JCM 11435 | LMG 21259
Moritella viscosa VP (Lunder et al. 2000) Benediktsdttir et al. 2000 <- Vibrio viscosus
(basonym) NCIMB 13584 | NVI 88/478, AJ132226
Moritella yayanosii VP Nogi and Kato 1999 DB21MT-5, AB008797 | JCM 10263
Genus XII. Pseudoalteromonas VP
Pseudoalteromonas haloplanktis subsp. haloplanktis VP (T) (ZoBell and Upham 1944)
Gauthier et al. 1995 <- Alteromonas haloplanktis (basonym) 215 | ATCC 14393,
X67024, Pal.halopl | DSM 6060
Pseudoalteromonas haloplanktis subsp. tetraodonis VP (Simidu et al. 1990) Gauthier et
al. 1995 <- Alteromonas tetraodonis (basonym) -> Pseudoalteromonas tetraodo-
nis ATCC 51193 | DSM 9166 | GFC | IAM 14160, X82139, Pal.haltet | NCIMB
13177
Pseudoalteromonas agarivorans VP Romanenko et al. 2003 DSM 14585 | KMM 255,
AJ417594
Pseudoalteromonas antarctica VP Bozal et al. 1997 NF3, AF045560 | CECT 4664,
X98336, Pal.antarc
Pseudoalteromonas atlantica VP (Akagawa-Matsushita et al. 1992) Gauthier et al. 1995
<- Alteromonas atlantica (basonym) ATCC 19262 | IAM 12927, X82134, Pal.at-
lant | NCIMB 301
Pseudoalteromonas aurantia VP (Gauthier and Breittmayer 1979) Gauthier et al. 1995 <-
Alteromonas aurantia (basonym) Cerbom 208 | ATCC 33046, X82135, Pal.aurant
| DSM 6057 | NCIMB 2052
Pseudoalteromonas bacteriolytica VP Sawabe et al. 1998 IAM 14595, D89929, Pal.ba-

clyt
Pseudoalteromonas carrageenovora VP (Akagawa-Matsushita et al. 1992) Gauthier et
al. 1995 <- Alteromonas carrageenovora (basonym) ATCC 43555 | DSM 6820 |
IAM 12662, X82136, Pal.carrag | NBRC 12985 | NCIMB 302
26 0
Hea tmap ana lysis of the Alterom onad ale s (G arrity an d Lilbu rn , un publis he d) su gges t th at s ubs p. M arin obac ter, Ma rinob act erium and
Micro bulbife r are like ly n ot mem bers of the A lterom ona dac eae .
26 1
26 2
26 3
Hea tmap ana lysis of the Alterom onad ale s (G arrity an d Lilbu rn , un publis he d) su gges t th at s ubs p. M arin obac ter, Ma rinob act erium and
Micro bulbife r are like ly n ot mem bers of the A lterom ona dac eae .
106
Pseudoalteromonas citrea VP (Gauthier 1977) Gauthier et al. 1995 emend. Ivanova et al.
1998 <- Alteromonas citrea (basonym) ATCC 29719 | DSM 6058 | NCIMB 1889,
X82137, Pal.citrea
Pseudoalteromonas denitri?cans VP (Enger et al. 1987) Gauthier et al. 1995 <-
Alteromonas denitri?cans (basonym) Nygaard 1977 | ATCC 43337, X82138,
Pal.denitr | DSM 6059 | IAM 14445
Pseudoalteromonas distincta VP (Romanenko et al. 1995) Ivanova et al. 2000 <- Al-
teromonas distinca (basonym) ATCC 700518 | KMM 638, AF043742
Pseudoalteromonas elyakovii VP (Ivanova et al. 1997) Sawabe et al. 2000 <- Al-
teromonas elyakovii (basonym) 40MC | ATCC 700519 | KMM 162, AF082562,
Altm.elyak | VKPM B3905
Pseudoalteromonas espejiana VP (Chan et al. 1978) Gauthier et al. 1995 <- Al-
teromonas espejiana (basonym) ATCC 29659 | CCUG 16147 | DSM 9414 | IAM
12640 | NCIMB 2127, X82143, Pal.espeji
Pseudoalteromonas ?avipulchra VP Ivanova et al. 2002 KMM 3630 | LMG 20361 |
NCIMB 2033, AF297958
Pseudoalteromonas issachenkonii VP Ivanova et al. 2002 CIP 106858 | KMM 3549,
AF316144 | LMG 19697
Pseudoalteromonas luteoviolacea VP (Gauthier 1982) Gauthier et al. 1995 <- Al-
teromonas luteoviolacea (basonym) CH 130 | ATCC 33492 | DSM 6061 | NCIMB
1893, X82144, Pal.luteov
Pseudoalteromonas maricaloris VP Ivanova et al. 2002 KMM 636, AF144036 | CIP
106859 | LMG 19692
Pseudoalteromonas mariniglutinosa VP (ex Berland et al. 1969) Romanenko et al. 2003
nom. rev. KMM 3635 | NCIMB 1770, AJ507251
Pseudoalteromonas nigrifaciens VP (Baumann et al. 1984) Gauthier et al. 1995 emend.
Ivanova et al. 1996 <- Alteromonas nigrifaciens (basonym) 217 | ATCC 19375 |
DSM 6063 | NCIMB 8614, X82146, Pal.nigrif
Pseudoalteromonas paragorgicola VP Ivanova et al. 2002 ATCC BAA-322 | KMM
3548, AY040229 | LMG 19694
Pseudoalteromonas peptidolytica VP Venkateswaran and Dohmoto 2000 F12-50-A1,
AF007286 | MBICC F1250A1
Pseudoalteromonas phenolica VP Isnansetyo and Kamei 2003 O-BC30, AF332880 |
IAM 14989 | KCTC 12086
Pseudoalteromonas piscicida VP (Bein 1954) Gauthier et al. 1995 ATCC 15057,
X82215, Pal.pisci2
Pseudoalteromonas prydzensis VP Bowman 1998 ACAM 620
Pseudoalteromonas rubra VP (Gauthier 1976) Gauthier et al. 1995 <- Alteromonas rubra
(basonym) ATCC 29570, X82147, Pal.rubra | DSM 6064
Pseudoalteromonas ruthenica Ivanova et al. 2002 CIP 106857 | KMM 300, AF316891
| LMG 19699
Pseudoalteromonas sagamiensis VP Kobayashi et al., 2003 B-10-31, AB063324 | DSM

14643 | JCM 11461
Pseudoalteromonas tetraodonis VP (Simidu et al. 1990) Ivanova et al. 2001 <- Pseu-
doaltermonas haloplanktis subsp. tetraodonis (basonym) GFC | DSM 9166 | IAM
14160, X82139 | KMM 458
Pseudoalteromonas translucida VP Ivanova et al. 2002 ATCC BAA-315 | KMM 520,
AY040230 | LMG 19696
Pseudoalteromonas tunicata VP Holmstrm et al. 1998 D2, Z25522 | CCUG 2675
Pseudoalteromonas ulvae VP Egan et al. 2001 UL12, AF172987 | NCIMB 13762 |
UNSW 095600
Pseudoalteromonas undina VP (Chan et al. 1978) Gauthier et al. 1995 <- Alteromonas
undina (basonym) ATCC 29660 | DSM 6065 | NCIMB 2128, X82140, Pal.undina
Genus XIII. Psychromonas VP 264
26 4
B .J. Tind all an d J.F. Be rn ardet h ave no ti?ed us that the genu s P s yc hromo nas was m is place d in th e Fla vob ac teria les .
107
Psychromonas antarctica VP (T) Mountfort et al. 1998 star-1, Y14697 | DSM 10704
Psychromonas arctica VP Groudieva et al. 2003 Pull 5.3, AF374385 | CECT 5674 | DSM
14288
Psychromonas kaikoae VP Nogi et al. 2002 JT7304, AB052160 | ATCC BAA-353 | JCM
11054
Psychromonas marina VP Kawasaki et al. 2002 4-22, AB023378 | IAM 14899 | JCM
10501 | NCIMB 13792
Psychromonas profunda VP Xu et al. 2003 2825, AJ416756 | JCM 11437 | LMG 21260
Genus XIV. Shewanella VP
Shewanella putrefaciens VP (T) (Lee et al. 1981) MacDonell and Colwell 1986 <- Al-
teromonas putrefaciens (basonym) Hammer 95 | ATCC 8071, X82133, She.putre3
| DSM 6067 | ICPB 352 | LMG 2268 | NCIB 10471
Shewanella algae VP Simidu et al. 1990 emend. Nozue et al. 1992 OK-1 | ACAM 541 |
ATCC 51192, AF005249, She.algaVe | IAM 14159, U91546, She.algae4
Shewanella amazonensis VP Venkateswaran et al. 1998 SB2B, AF005248, She.amznen
| ATCC 700329
Shewanella baltica VP Ziemke et al. 1998 CECT 323 | DSM 9439 | IAM 1477 | LMG
2250 | NCTC 10735, AJ000214, She.baltic
Shewanella benthica VP MacDonell and Colwell 1986 W 145 | ATCC 43992, X82131,
She.benthi | DSM 8812
Shewanella colwelliana VP (Weiner et al. 1988) Coyne et al. 1990 <- Alteromonas col-
welliana (basonym) ATCC 39565
Shewanella denitri?cans VP Brettar et al. 2002 OS217, AJ311964 | DSM 15013 | LMG
21692
Shewanella ?delis VP Ivanova et al. 2003 ATCC BAA-318 | KMM 3582, AF420312 |
LMG 20551
Shewanella frigidimarina VP Bowman et al. 1997 ICP1, U85903, She.frgmar | ACAM
591, U85903, She.frgmar | DSM 12253
Shewanella gaetbuli VP Yoon et al. 2004 TF-27, AY190533 | JCM 11814 | KCCM 41648
Shewanella gelidimarina VP Bowman et al. 1997 ICP6 | ACAM 456, U85907, She.gel-
mar
Shewanella hanedai VP (Jensen et al. 1981) MacDonell and Colwell 1986 <- Al-
teromonas hanedai (basonym) 281 | ATCC 33224, U91590, She.haned2 | CIP
103207, X82132, She.haneda | DSM 6066
Shewanella japonica VP Ivanova et al. 2001 CIP 106860 | KMM 3299, AF145921 | LMG
19691
Shewanella livingstonensis VP Bozal et al. 2002 NF22, AJ300834 | CECT 5933 | LMG
19866
Shewanella marinintestina VP Satomi et al. 2003 IK-1, AB081757 | JCM 11558 | LMG
21403
Shewanella olleyana VP Skerratt et al. 2002 ACAM 644 | ACEM 9, AF295592 | LMG
21437
Shewanella oneidensis VP Venkateswaran et al. 1999 MR-1, AF005251, She.oneidn |
ATCC 700550
Shewanella pealeana VP Leonardo et al. 1999 ANG-SQ1, AF011335 | ATCC 700345
Shewanella sairae VP Satomi et al. 2003 JCM 11563 | LMG 21408 | SM2-1, AB081762
Shewanella schlegeliana VP Satomi et al. 2003 HRKA1, AB081760 | JCM 11561 | LMG
21406
Shewanella violacea VP Nogi et al. 1999 DSS12, D21225, She.violac | JCM 10179
Shewanella woodyi VP Makemson et al. 1997 MS32, AF003549, She.woody2 | ATCC
51908 | DSM 12036
Genus XV. Thalassomonas VP
Thalassomonas viridans VP (T) Macin et al. 2001 XOM25, AJ294748 | CECT 5083 |
DSM 13754
108
Thalassomonas ganghwensis VP Yi et al. 2004 DSM 15355 | IMSNU 14005 | JC2041,

AY194066 | KCTC 12041
Family II. Incertae sedis
Genus I. Teredinibacter VP
Teredinibacter turnerae VP (T) Distel et al. 2002 T7902, AY028398 | ATCC 39867 | DSM
15152
Order XI. VibrionalesNP
Family I. Vibrionaceae AL
Genus I. Vibrio AL (T)
Vibrio cholerae AL (T) Pacini 1854 = Vibrio albensis (junior heterotypic synonym) ATCC
14035, X74695, V.cholera2 | ATCC 14035, Z21856, V.cholera6 | NCTC 8021
Vibrio aerogenes VP Shieh et al. 2000 FG1, AF124055 | ATCC 700797 | CCRC 17041
Vibrio aestuarianus VP Tison and Seidler 1983 OY-0-002 | ATCC 35048, X74689, V.aes-
tuar3
Vibrio agarivorans VP Macin et al. 2001 289 | CECT 5085, AJ310647 | DSM 13756
Vibrio albensis AL Lehmann and Neumann 1896 = Vibrio cholerae (senior heterotypic
synonym) ATCC 14547
Vibrio alginolyticus AL (Miyamoto et al. 1961) Sakazaki 1968 <- Beneckea alginolytica
(basonym) ATCC 17749, X56576, V.alginoly | ATCC 17749, X74690, V.alginol3
| CCM 2578 | CIP I.029 | DSM 2171 | IMET 11295
Vibrio anguillarum AL Bergeman 1909 -> Listonella anguillarum ATCC 19264,

X16895, Lsn.angu22 | NCMB 6
Vibrio brasiliensis VP Thompson et al. 2003 CAIM 495 | LMG 20546, AJ316172
Vibrio calviensis VP Denner et al. 2002 RE35F/12 | CIP 107077, AF118021 | DSM 14347
Vibrio campbellii VP (Baumann et al. 1971) Baumann et al. 1981 <- Beneckea campbellii
(basonym) ATCC 25920, X56575, V.campbell | IMET 11296
Vibrio carchariae VP Grimes et al. 1985 = Vibrio harveyi (senior heterotypic synonym)
1116b, X74693 | ATCC 35084
Vibrio chagasii VP Thompson et al. 2003 R-3712, AJ316199 | CAIM 431 | LMG 21353
Vibrio cincinnatiensis VP Brayton et al. 1986 ATCC 35912, X74698, V.cincnati
Vibrio coralliilyticus VP Ben-Haim et al. 2003 YB1, AJ440005 | ATCC BAA-450 | LMG
20984
Vibrio costicola AL Smith 1938 emend. Garcia et al. 1987 -> Salinivibrio costicola
ATCC 33508, X74699, Sav.costic | DSM 11403 | NCMB 701
Vibrio cyclitrophicus VP Hedlund and Staley 2001 P-2P44, U57919 | ATCC 700982 | CIP
106644
Vibrio damselae VP Love et al. 1982 265 -> Listonella damselae ATCC 33539,
AB032015 | CDC 2588-80
Vibrio diabolicus VP Raguns et al. 1997 HE800, X99762, V.diabolic | CNCM I-1629
Vibrio diazotrophicus VP Guerinot et al. 1982 NS1 | ATCC 33466, X56577, V.diazotro |
ATCC 33466, X74701, V.diazotr3 | DSM 2604 | IAM 14402
Vibrio ?scheri AL (Beijerinck 1889) Lehmann and Neumann 1896 = Photobacterium
?scheri (homotypic synonym) ATCC 7744 | DSM 507 | NCMB 1281, X70640,
V.? scher4
Vibrio ?uvialis VP Lee et al. 1981 266 = Allomonas enterica (junior homotypic synonym)
VL 5125 | ATCC 33809, X74703, V.? uviali | IMET 11293 | NCTC 11327, X76335,
V.? uvial3
Vibrio furnissii VP Brenner et al. 1984 ATCC 35016, X74704, V.furnissi | ATCC 35016,
X76336, V.furniss2 | CDC B3215
Vibrio gazogenes VP (Harwood et al. 1980) Baumann et al. 1981 <- Beneckea gazogenes
(basonym) PB1 | ATCC 29988, X74705, V.gazogene
26 5
Farme r e t al cont end th at the corrected e pith et da msela e is unn ece ss ary a s th e the o riginal form da ms ela is f ormed p ro perly as a nou n in
op position (sic) and is co nsistent with R ule 12c(2 ) o f the Code. Us ers of the O utlin e s hould als o be a ware tha t the re are c on?ic tin g v iews on
the tran sfe r of Vibrio da msela to the g enus Pho tobacterium.
26 6
Allom onas enterica is a subjective synon ym of Vibrio ?u vialis ac c ordin g to Farme r.
109
Vibrio halioticoli VP Sawabe et al. 1998 A431 | IAM 14596, AB000390, V.haliotic
Vibrio harveyi VP (Johnson and Shunk 1936) Baumann et al. 1981 <- Beneckea harveyi
(basonym) <- Lucibacterium harveyi (basonym) = Vibrio carchariae (junior het-
erotypic synonym) = Vibrio trachuri (junior heterotypic synonym) ATCC 14126,
X56578, V.harveyi4 | ATCC 14126, X74706, V.harveyi6 267
Vibrio hispanicus VP Gomez-Gil et al. 2004 CAIM 525 | LMG 13240, AY254039 | VIB
213
Vibrio hollisae VP Hickman et al. 1982 -> Grimontia hollisae ATCC 33564, X56583,
V.hollisae | ATCC 33564, X74707, V.hollisa3 | CDC 0075-80 | IMET 12291
Vibrio ichthyoenteri VP Ishimura et al. 1996 F-2 | NBRC 15847
Vibrio iliopiscarius VP Onarheim et al. 1995 -> Photobacterium iliopiscarium PS1 |
PT1 | ATCC 51760, AB000278, Phb.iliopi | DSM 9896
Vibrio kanaloae VP Thompson et al. 2003 CAIM 485 | INCO 191 | LMG 20539,
AJ316193
Vibrio lentus VP Macian et al. 2001 4OM4, AJ278881 | CECT 5110 | DSM 13757
Vibrio logei VP (Harwood et al. 1980) Baumann et al. 1981 <- Photobacterium logei
(basonym) 584 | ATCC 29985
Vibrio marinus VP Baumann et al. 1984 -> Moritella marina ATCC 15381, X74709,
Mrt.marin3
Vibrio mediterranei VP Pujalte and Garay 1986 50 | ATCC 43341 | CECT 621 | CIP
103203, X74710, V.mediterr | LMG 11258 | NCTC 11946
Vibrio metschnikovii AL Gamaleia 1888 P.6915, X74711 | CCUG 3280 | CIP 69.15 | ICPB
3552 | LMG 4417 | NCTC 8443
Vibrio mimicus VP Davis et al. 1982 1721-77 | ATCC 33653, X74713, V.mimicus
Vibrio mytili VP Pujalte et al. 1993 165 | CECT 632
Vibrio natriegens VP (Payne et al. 1961) Baumann et al. 1981 <- Beneckea natriegens
(basonym) ATCC 14048, X74714, V.natrieg4 | DSM 759 | IMET 11297 | NCMB
857
Vibrio navarrensis VP Urdaci et al. 1991 1397-6 | CIP 103381, X74715, V.navarren
Vibrio neptunius VP Thompson et al. 2003 CAIM 532 | LMG 20536, AJ316171
Vibrio nereis VP (Harwood et al. 1980) Baumann et al. 1981 <- Beneckea nereis (ba-
sonym) 80 | ATCC 25917, X74716, V.nereis
Vibrio nigripulchritudo VP (Baumann et al. 1971) Baumann et al. 1981 <- Beneckea
nigrapulchrituda (basonym) ATCC 27043, X74717, V.nigripul
Vibrio ordalii VP Schiewe et al. 1982 DF3K | ATCC 33509, X70641, V.ordalii5 | ATCC
33509, X74718, V.ordalii
Vibrio orientalis VP Yang et al. 1983 717 | ATCC 33934, X74719, V.oriental
Vibrio parahaemolyticus AL (Fujino et al. 1951) Sakazaki et al. 1963 = Beneckea para-
haemolytica (homotypic synonym) EB 101 | ATCC 17802, M59161, V.phaemoly |
ATCC 17802, X56580, V.phaemol2 | ATCC 17802, X74720, V.phaemol5 | CIP 75.2
| DSM 10027 | NCMB 1902 | NCTC 10903
Vibrio pectenicida VP Lambert et al. 1998 A365, Y13830, V.pectenic | CIP 105190
Vibrio pelagius VP (Baumann et al. 1971) Mandel Baumann et al. 1981 <- Beneckea
pelagia (basonym) -> Listonella pelagia 99 | ATCC 25916, X74722
Vibrio penaeicida VP Ishimaru et al. 1995 KH-1 | NBRC 15640 | JCM 9123
Vibrio pomeroyi VP Thompson et al. 2003 CAIM 578 | INCO 62 | LMG 20537, AJ491290
Vibrio proteolyticus VP (Merkel et al. 1964) Baumann et al. 1982 <- Aeromonas hy-
drophila subsp. proteolytica (basonym) ATCC 15338, X56579, V.proteoly | ATCC
15338, X74723, V.proteol3 | CIP 73.06 | DSM 30189 | NBRC 13287 | NCMB 1326
Vibrio ruber VP Shieh et al. 2003 VR1 | CCRC 17186 | JCM 11486, AF462458
Vibrio rumoiensis VP Yumoto et al. 1999 S-1, AB013297 | FERM P-14531
Vibrio salmonicida VP Egidius et al. 1986 HI 7751 | NCMB 2262, X70643, V.salmoni4
Vibrio scophthalmi VP Cerd-Cullar et al. 1997 A089, U46579, V.scophtha | CECT
4638, U46579, V.scophtha
26 7
B ene ke a ha rveyi a nd L uciba cte rium harveyi are objectiv e s yn ony ms an d bo th are con sidered bas ony ms o f Vibrio harv eyi.
110
Vibrio shilonii VP Kushmaro et al. 2001 AK1, AF007115 | ATCC BAA-91 | DSM 13774
Vibrio splendidus VP (Beijerinck 1900) Baumann et al. 1981 <- Beneckea splendida
(basonym) ATCC 33125, X74724, V.splendid | NCMB 1
Vibrio succinogenes AL Wolin et al. 1961 -> Wolinella succinogenes ATCC 29543,
M88159, Wln.succi2 | DSM 1740
Vibrio superstes VP Hayashi et al. 2003 IAM 15009, | LMG 21323, AY155585
Vibrio tapetis VP Borrego et al. 1996 B1090 | CECT 4600, Y08430, V.tapetis1
Vibrio tasmaniensis VP Thompson et al. 2003 VIB 836 | CAIM 634 | LMG 20012,
AJ316192
Vibrio trachuri VP Iwamoto et al. 1996 = Vibrio harveyi (senior heterotypic synonym)
T9210 | JCM 9677
Vibrio tubiashii VP Hada et al. 1984 ATCC 19109, X74725, V.tubiashi
Vibrio viscosus VP Lunder et al. 2000 -> Moritella viscosa NVI 88/478, AJ132226 |
NVI 88/478, Y17574 | NCIMB 13584
Vibrio vulni?cus VP (Reichelt et al. 1979) Farmer 1980 <- Beneckea vulni?ca (basonym)
324 | ATCC 27562, X56582, V.vulni?c | ATCC 27562, X74726, V.vulni?T | ATCC
27562, X76333, V.vulni?6 | DSM 10143 | IMET 11292

Vibrio wodanis VP Lunder et al. 2000 NVI 88/441, AJ132227 | NCIMB 13582
Vibrio xuii VP Thompson et al. 2003 R-15052, AJ316181 | CAIM 467 | LMG 21346
Genus II. Allomonas VP
Allomonas enterica VP (T) Kalina et al. 1984 = Vibrio ?uvialis (homotypic synonym) 40
| BKM B1485 | VKM B-1485
Genus III. Catenococcus VP 268

Catenococcus thiocycli VP (T) Sorokin 1994 TG 5-3, AF139723 | ATCC 51228 | DSM
9165 | LMD 92.12
Genus IV. Enterovibrio VP
Enterovibrio norvegicus VP (T) Thompson et al. 2002 CAIM 430 | LMG 19839,
AJ316208
Genus V. Grimontia VP
Grimontia hollisae(T) Thompson et al. 2003 comb. nov. <- Vibrio hollisae (basonym)
LMG 17719, AJ514909
Genus VI. Listonella VP

Listonella anguillarum VP (T) (Bergeman 1909) MacDonell and Colwell 1986 <- Vibrio
anguillarum (basonym) ATCC 19264, X16895, Lsn.angu22 | NCMB 6
Listonella damselae VP (Love et al. 1982) MacDonell and Colwell 1986 <- Vibrio
damselae (basonym) -> Photobacterium damselae subsp. damselae ATCC
33539, AB032015 | CDC 2588-80 | DSM 7482
Listonella pelagia VP (Baumann et al. 1971) MacDonell and Colwell 1986 <- Vibrio
pelagius (basonym) 99 | ATCC 25916, X74722, Lsn.pelag2
Genus VII. Photobacterium AL
Photobacterium phosphoreum AL (T) (Cohn 1878) Beijerinck 1889 ATCC 11040,
D25310, Phb.phosp4 | ATCC 11040, X74687, Phb.phosp3 | ATCC 11040, Z19107
| Baumann 439 | CIP 75.09 | LMG 4233 | NCMB 1282
Photobacterium angustum AL Reichelt et al. 1979 68 | B-2 | ATCC 25915, D25307,

Phb.angus3 | ATCC 25915, X74685, Phb.angust
Photobacterium damselae subsp. damselae VP (Love et al. 1982) Smith et al. 1991 <-
Listonella damselae (basonym) = Photobacterium histaminum (junior heterotypic
synonym) ATCC 33539, X74700, Phb.damse5 | CDC 2588-80 | DSM 7482
Photobacterium damselae subsp. piscicida VP (ex Snieszko et al. 1964) Gauthier et al.
1995 NCIMB 2058, X78105, Phb.damsel
Photobacterium ?scheri AL (Beijerinck 1889) Reichelt and Baumann 1973 = Vibrio ?s-
cheri (homotypic synonym) ATCC 7744 | NCMB 1281, X70640, X74702
26 8
Placemen t b ased on short seq uence (421 nts).
26 8
111
Photobacterium histaminum VP Okuzumi et al. 1994 = Photobacterium damselae

subsp. damselae (senior heterotypic synonym) C-8, D25308, Phb.histam | JCM
8968
Photobacterium iliopiscarium VP (Onarheim et al. 1995) Urakawa et al. 1999 <- Vibrio
iliopiscarius (basonym) PS1 | PT1 | ATCC 51760, AB000278, Phb.iliopi | DSM
9896
Photobacterium leiognathi AL Boisvert et al. 1967 ATCC 25521, D25309, Phb.leiog4 |
ATCC 25521, X74686, Phb.leiogn
Photobacterium logei VP (ex Bang et al. 1978) Harwood et al. 1980 -> Vibrio logei
584 | ATCC 29985
Photobacterium profundum VP Nogi et al. 1998 DSJ4, D21226, Phb.profnd | JCM 10084
Genus VIII. Salinivibrio VP
Salinivibrio costicola subsp. costicola VP (T) (Smith 1938 emend. Garcia et al. 1987)
Mellado et al. 1996 <- Vibrio costicola (basonym) ATCC 33508, X74699,
Sav.costic | DSM 11403 | NCIMB 701, X95527, Sav.costi3
Salinivibrio costicola subsp. vallismortis VP Huang et al. 2000 DV, AF057016 | DSM
8285
Order XII. AeromonadalesNP
Family I. Aeromonadaceae VP
Genus I. Aeromonas AL (T)
Aeromonas hydrophila subsp. hydrophila AL (T) (Chester 1901) Stanier 1943 ATCC
7966, M59148, Arm.hphil2 | ATCC 7966, X60404, Arm.hphila | ATCC 7966,
X60406, Arm.salmo4 | ATCC 7966, X60407, Arm.salmo8 | ATCC 7966, X60410,
Arm.media | ATCC 7966, X60412, Arm.sobria | ATCC 7966, X60413, Arm.jandae
| ATCC 7966, X60414, Arm.veroni | ATCC 7966, X60415, Arm.trota | ATCC 7966,
X60416, Arm.schubr | ATCC 7966, X60417, Arm.sp2 | ATCC 7966, X74677,

Arm.hphil4 | DSM 30187, X87271, Arm.hphil5 | NCDC 359-60 | NCMB 86 | NCTC
8049
Aeromonas hydrophila subsp. anaerogenes AL Schubert 1964 ATCC 15467 | DSM
30188 | NBRC 13282
Aeromonas hydrophila subsp. dhakensis VP Huys et al. 2002 P21 | CCUG 45377 | LMG
19562
Aeromonas hydrophila subsp. proteolytica AL (Merkel et al. 1964) Schubert 1969 ->
Vibrio proteolyticus ATCC 15338, X56579, V.proteoly | ATCC 15338, X74723,
V.proteol3 | CIP 73.06 | DSM 30189 | NBRC 13287 | NCMB 1326
Aeromonas hydrophila subsp. ranae VP Huys et al. 2003 Au-1D12 | HDP 90246,
AJ508766 | CCUG 46211 | LMG 19707
Aeromonas allosaccharophila VP Martinez-Murcia et al. 1992 ATCC 51208 | CECT
4199, S39232, Arm.allsac | DSM 11576
Aeromonas bestiarum VP Ali et al. 1996 ATCC 51108, X60406 | CDC 9533-76 | CIP
7430
Aeromonas caviae VP Popoff 1984 = Aeromonas punctata (senior homotypic synonym)
ATCC 15468, X74674, Arm.cavia4 | DSM 7323 | NRRL B-968
Aeromonas culicicola VP Pidiyar et al. 2002 269 MTCC 3249, AF170914 | NCIM 5147
Aeromonas encheleia VP Esteve et al. 1995 emend. Huys et al. 1997 S181 | CECT 4342
| DSM 11577 | LMG 16330
Aeromonas enteropelogenes VP Schubert et al. 1991 J11 | ATCC 49803 | DSM 6394,
X71121, Arm.epelog | JCM 8355
Aeromonas eucrenophila VP Schubert and Hegazi 1988 emend. Huys et al. 1997 Popoff
546 | ATCC 23309, X74675, Arm.eucre2 | CDC-RH63 | NCMB 74
Aeromonas ichthiosmia VP Schubert et al. 1991 115/II | ATCC 49904 | DSM 6393,
X71120, Arm.ichthi | JCM 8354 | NCIMB 13205
26 9
112
Aeromonas jandaei VP Carnahan et al. 1992 ATCC 49568, X74678, Arm.janda2 | CDC
0787-80, U88662, Arm.janda3 | DSM 7311
Aeromonas media VP Allen et al. 1983 RM | ATCC 33907, X74679, Arm.media3 | DSM
4881
Aeromonas popof?i VP Huys et al. 1997 LMG 17541, AJ224308, Arm.popoff
Aeromonas punctata subsp. punctata AL (Zimmermann 1890) Snieszko 1957 =
Aeromonas caviae (junior homotypic synonym) ATCC 15468
Aeromonas punctata subsp. caviae AL (Scherago 1936) Schubert 1964 = Aeromonas
caviae (junior homotypic synonym) ATCC 15468 | IMET 11045
Aeromonas salmonicida subsp. salmonicida AL (Lehmann and Neumann 1896) Grif-
?n et al. 1953 ATCC 33658, X74681, Arm.salmo6 | IMET 11051 | NCMB 1102,
X60405, Arm.salmo3 | NCMB 1102, X71836, Arm.salmo9
Aeromonas salmonicida subsp. achromogenes AL (Smith 1963) Schubert 1967 NCMB
1110
Aeromonas salmonicida subsp. masoucida AL Kimura 1969 ATCC 27013, X74680,
Arm.salmo5
Aeromonas salmonicida subsp. pectinolytica VP Pavan et al. 2000 34mel, AF134065 |
DSM 12609
Aeromonas salmonicida subsp. smithia VP Austin et al. 1989 138 | CCM 4103,
AJ009859, Arm.salm11
Aeromonas schubertii VP Hickman-Brenner et al. 1989 ATCC 43700, X74682,
Arm.schub2 | CDC 2446-81 | DSM 4882
Aeromonas sobria VP Popoff and Veron 1981 208 | ATCC 43979, X74683, Arm.sobri2 |
CDC 9358-7b | CIP 7433 | NCIB 12065
Aeromonas simiae VP Harf-Monteil et al. 2004 IBS S6874, AJ536821 | CIP 107798,
CCUG 47378 | , | ,
Aeromonas trota VP Carnahan et al. 1992 AH2 | ATCC 49657 | DSM 7312
Aeromonas veronii VP Hickman-Brenner et al. 1988 ATCC 35624, X74684,
Arm.veron3 | CDC 1169-83 | DSM 7386
Genus II. Oceanimonas VP
Oceanimonas doudorof?i VP (T) (Baumann et al. 1972) Brown et al. 2001 <- Pseu-
domonas doudorof?i (basonym) 70 | DSM 7028 | ATCC 27123, AB019390
Oceanimonas baumannii VP Brown et al. 2001 GB6 | ATCC 700832, | NCIMB 13685,
AF168367
Genus III. Oceanisphaera VP
Oceanisphaera litoralis VP Romanenko et al. 2003 DSM 15406 | KMM 3654, AJ550470
Genus IV. Tolumonas VP
Tolumonas auensis VP (T) Fischer-Romero et al. 1996 TA 4, X92889, Tlm.auensi | DSM
9187
Family II. Incertae sedis: Succinivibrionaceae VP 270
Genus I. Succinivibrio AL (T)
Succinivibrio dextrinosolvens AL (T) Bryant and Small 1956 554 | ATCC 19716 | DSM
3072, Y17600
Genus II. Anaerobiospirillum AL 271
Anaerobiospirillum succiniciproducens AL (T) Davis et al. 1976 S411 | ATCC 29305,
U96412, Abs.sucprd | DSM 6400 | NCTC 11536
Anaerobiospirillum thomasii VP Malnick 1997 A273/88 | DSM 11806, AJ420985 |
NCTC 12467
Genus III. Ruminobacter VP
Ruminobacter amylophilus VP (T) (Hamlin and Hungate 1956) Stackebrandt and Hippe
1987 <- Bacteroides amylophilus (basonym) H 18 | ATCC 29744, Y15992,
Rum.amylo2 | DSM 1361, Y15992, Rum.amylo2 | VPI 2502 B
Genus IV. Succinimonas VP
27 0
P la cem ent of th e Su ccin ivib riona cea e is b ase d on Ludw igs rec om men dation. N o s eque nc e dat a av ailab le f or the t ype st ra in in th e RDP.
27 1
P la ce ment of A nae ro bio sp irillu m is based o n Lu dwig s rec omm enda tion and ma pping o f s eque nce dat a in P CA p lots .
113
Succinimonas amylolytica AL (T) Bryant et al. 1958 B24 | ATCC 19206 | DSM 2873,
Y17599 | VPI 13846
Order XIII. EnterobacterialesNP
Family I. Enterobacteriaceae AL
Genus I. Escherichia AL (T)
Escherichia coli AL (T) (Migula 1895) Castellani and Chalmers 1919 , E.coli1775
O1:K1:H7 | ATCC 11775, X80725 | CCM 5172 | CIP 54.8 | DSM 30083 | IAM 12119
| JCM 1649 | NCDO 1989 | NCTC 9001
Escherichia adecarboxylata AL Leclerc 1962 -> Leclercia adecarboxylata ATCC

23216 | DSM 30081
Escherichia albertii VP Huys et al. 2003 Albert 19982 | CCUG 46494 | LMG 20976,
AJ508775
Escherichia blattae AL Burgess et al. 1973 ATCC 29907 | CDC 9005-74 | DSM 4481
Escherichia fergusonii VP Farmer et al. 1985 ATCC 35469, AF530475 | CDC 0568-73
Escherichia hermannii VP Brenner et al. 1983 ATCC 33650 | CDC 980-72 | DSM 4560
Escherichia vulneris VP Brenner et al. 1983 ATCC 33821, X80734, E.vulneris | CDC
875-72 | DSM 4564 | IAM 14239 | JCM 1688 | NIH 580
Genus II. Alterococcus VP
Alterococcus agarolyticus VP (T) Shieh and Jean 1999 ADT3, AF075271, Alt.agrlyt |
CCRC 19135
Genus III. Arsenophonus VP
Arsenophonus nasoniae VP (T) Gherna et al. 1991 SK14, M90801, Ars.nasoni | ATCC
49151, M90801, Ars.nasoni
Candidatus "Arsenophonus triatominarum" Hypsa and Dale 1997 U91786
Genus IV. Brenneria VP
Brenneria salicis VP (T) (Day 1924) Hauben et al. 1999 <- Erwinia salicis (basonym)
BS 1027 | EX2 | ATCC 15712, U80210, Bn.salicis | CFBP 802 | DSM 30166 | ICMP
1587 | LMG 2698, Z96097, Bn.salici2 | NCPPB 447
Brenneria alni VP (Surico et al. 1996) Hauben et al. 1999 <- Erwinia alni (basonym)
PVFi 20 | DSM 11811 | ICMP 12481, AJ223468, Bn.alni1 | NCPPB 3934
Brenneria nigri?uens VP (Wilson et al. 1957) Hauben et al. 1999 <- Erwinia nigri?uens
(basonym) EN 101 | ATCC 13028, U80203, Bn.nigrif1 | DSM 30175 | ICMP 1578
| LMG 2694, Z96095, Bn.nigrif2
Brenneria paradisiaca VP (Fernandez-Borrero and Lopez-Duque 1970) Hauben et al.

1999 <- Erwinia paradisiaca (basonym) ATCC 33242 | LMG 2542, Z96096,
Bn.paradis | NCPPB 2511
Brenneria quercina VP (Hildebrand and Schroth 1967) Hauben et al. 1999 <- Erwinia
quercina (basonym) ATCC 29281 | DSM 4561 | ICMP 1845 | ICPB EQ 101 | LMG
2724, AJ223469, Bn.quercin
Brenneria rubrifaciens VP (Wilson et al. 1967) Hauben et al. 1999 <- Erwinia rubrifa-
ciens (basonym) 533c | Dye FC1 | ATCC 29291, U80207, Bn.rubrifa | CFBP 1283
| DSM 4483 | ICMP 1915 | ICPB ER 103 | LMG 2709, Z96098, Bn.rubrif2 | NCPPB
2020 | PDDCC 1915

Genus V. Buchnera VP
Buchnera aphidicola VP (T) Munson et al. 1991 no culture isolated, M63246,
Buc.aphSgr
Genus VI. Budvicia VP
Budvicia aquatica VP (T) Bouvet et al. 1985 20186 | 20186HG01 | ATCC 25567 | CNCTC
350 | DSM 5075, AJ233407
Genus VII. Buttiauxella VP
Buttiauxella agrestis VP (T) Ferragut et al. 1982 emend. Mller et al. 1996 Gavini F-44
| ATCC 33320 | CDC 1176-81, AJ293685 | CIP 80-31 | CUETM 77-167 | DSM 4586
Buttiauxella brennerae VP Mller et al. 1996 S1/6-571 | ATCC 51605 | DSM 9396,
AJ233401
114
Buttiauxella ferragutiae VP Mller et al. 1996 ATCC 51602 | CDC 1180-81 | CUETM
78-31 | DSM 9390, AJ233402
Buttiauxella gaviniae VP Mller et al. 1996 S1/1-984 | ATCC 51604 | DSM 9393,
AJ233403
Buttiauxella izardii VP Mller et al. 1996 S3/2-161 | ATCC 51606 | DSM 9397,
AJ233404
Buttiauxella noackiae VP Mller et al. 1996 NSW 11, AJ293689 | ATCC 51607 | DSM
9401, AJ233405
Buttiauxella warmboldiae VP Mller et al. 1996 NSW 326 | ATCC 51608 | DSM 9404,
AJ233406
Genus VIII. Calymmatobacterium VP
Calymmatobacterium granulomatis AL (T) Aragao and Vianna 1913 -> Klebsiella
granulomatis, AF010251, Cmb.granu1, AF010252, Cmb.granu2, AF010253,
Cmb.granu3
Genus IX. Cedecea VP
Cedecea davisae VP (T) Grimont et al. 1981 5 | ATCC 33431 | CDC 3278-77 | CIP 80.34
| DSM 4568, AF493976
Cedecea lapagei VP Grimont et al. 1981 4 | ATCC 33432 | CDC 0485-76 | CIP 80.35
Cedecea neteri VP Farmer et al. 1983 002 of Grimont | ATCC 33855 | CDC 0621-75
Genus X. Citrobacter AL
Citrobacter freundii AL (T) (Braak 1928) Werkman and Gillen 1932 ATCC 8090 | DSM
30039, AJ233408 | NBRC 12681 | NCTC 9750
Citrobacter amalonaticus VP (Young et al. 1971) Brenner and Farmer 1982 <- Levinea
amalonatica (basonym) ATCC 25405aeCIP 82.89 | DSM 4593 | NCTC 10805
Citrobacter braakii VP Brenner et al. 1993 ATCC 51113 | CDC 80-58, AF025368,
Cit.braaki
Citrobacter diversus (Burkey 1928) Werkman and Gillen 1932 nom. rej. 272 = Citrobac-
ter koseri (senior heterotypic synonym) ATCC 27156 | CDC 3613-63, AF025372,
Cit.koseri | CIP 82.94 | DSM 4570
Citrobacter farmeri VP Brenner et al. 1993 ATCC 51112 | CDC 2991-81, AF025371,
Cit.farmer
Citrobacter gillenii VP Brenner et al. 2000 ATCC 51117 | CCUG 30796 | CDC 4693-86
Citrobacter koseri AL Frederiksen 1970 = Levinea malonatica (junior heterotypic syn-
onym) = Citrobacter diversus (junior heterotypic synonym) ATCC 27028 | CCM
2537 | CDC 3613-63, AF025372 | CIP 82.87 | DSM 4595 | NCTC 10786
Citrobacter murliniae VP Brenner et al. 1999 ATCC 51118 | CCUG 30797 | CDC
2970-59, AF025369
Citrobacter rodentium VP Schauer et al. 1996 ATCC 51116 | CDC 1843-73, AF025363,
Cit.rodent
Citrobacter sedlakii VP Brenner et al. 1993 ATCC 51115 | CDC 4696-86, AF025364,
Cit.sedlak
Citrobacter werkmanii VP Brenner et al. 1993 ATCC 51114 | CDC 876-58, AF025373,
Cit.werkma
Citrobacter youngae VP Brenner et al. 1993 ATCC 29935 | CDC 460-61
Genus XI. Edwardsiella AL
Edwardsiella tarda AL (T) Ewing and McWhorter 1965 K349 | ATCC 15947, AB050827
| ATCC 23656 | CCM 2238 | CDC 1483-59 | DSM 30052 | NCDC 1483-59 | NCTC
10396
Edwardsiella anguillimortifera AL (Hoshina 1962) Sakazaki and Tamura 1975 ATCC
15947
Edwardsiella hoshinae VP Grimont et al. 1981 28522 | ATCC 33379 | CIP 78.56 | JCM
1679, AB050825
Edwardsiella ictaluri VP Hawke et al. 1981 ATCC 33202 | CDC 1976-78 | JCM 1680,
AB050826 | SECFDL GA77-52
27 2
Citroba cte r diversus was included in the A pproved List o f Ba cte rial Nam es but h as sinc e be en plac ed o n th e lis t of n omina rejic ienda .
115
Genus XII. Enterobacter AL

Enterobacter cloacae AL (T) (Jordan 1890) Hormaeche and Edwards 1960 ATCC 13047,
AJ251469 | CIP 60.85 | DSM 30054 | NBRC 13535 | NCDC 279-56 | NCTC 10005
Enterobacter aerogenes AL Hormaeche and Edwards 1960 = Klebsiella mobilis (homo-
typic synonym) ATCC 13048 | CDC 819-56 | DSM 30053 | JCM 1235, AB004750,
Enb.aeroge | NCTC 10006
Enterobacter agglomerans AL Ewing and Fife 1972 -> Pantoea agglomerans = Erwinia
herbicola (junior heterotypic synonym) = Erwinia milletiae (junior heterotypic
synonym) ATCC 27155 | CIP 57.51 | DSM 3493 | JCM 1236, AB004691, Pn.ag-
glomr | NCTC 9381
Enterobacter amnigenus VP Izard et al. 1981 ATCC 33072 | CUETM 77-118 | DSM 4486
| JCM 1237, AB004749, Enb.amnige
Enterobacter asburiae VP Brenner et al. 1988 1497-78 | ATCC 35953 | CDC 1497-78 |
JCM 6051, AB004744, Enb.asburi
Enterobacter cancerogenus VP (Urosevic 1966) Dickey and Zumoff 1988 <- Erwinia
cancerogena (basonym) = Enterobacter taylorae (junior heterotypic synonym)
ATCC 33241 | ICMP 5706 | LMG 2693, Z96078, Enb.cancer | NCPPB 2176
Enterobacter cowanii VP Inoue et al. 2001 273 88876 | CIP 107300, AJ508303 | JCM
10956
Enterobacter dissolvens VP (Rosen 1922) Brenner et al. 1988 <- Erwinia dissolvens
(basonym) ATCC 23373 | ICMP 1570 | LMG 2683, Z96079, Enb.dissol | NCPPB
1850
Enterobacter gergoviae VP Brenner et al. 1980 ATCC 33028 | CDC 604-77 | CIP 76.01 |
DSM 9245 | JCM 1234, AB004748, Enb.gergov | NCTC 11434
Enterobacter hormaechei VP OHara et al. 1990 0992-77 | ATCC 49162 | CIP 103441,
AJ508302 | DSM 12409
Enterobacter intermedius VP Izard et al. 1980 E86 | Gavini E 86 | ATCC 33110 | CIP 79-27
| CUETM 77-130 | DSM 4581 | IAM 14238 | JCM 1238, AB004747, Enb.interm
Enterobacter kobei VP Kosako et al. 1997 CIP 105566, AJ508301 | JCM 8580 | NIH
1485-79
Enterobacter nimipressuralis VP (Carter 1945) Brenner et al. 1988 <- Erwinia nimipres-
suralis (basonym) ATCC 9912 | ICMP 1577 | LMG 10245, Z96077, Enb.nimipr
Enterobacter pyrinus VP Chung et al. 1993 ATCC 49851 | CDC G6570 | DSM 12410 |
ICMP 1 | KCTC 2520, AJ010486, Enb.pyrinu
Enterobacter sakazakii VP Farmer et al. 1980 Ct2 | ATCC 29544 | CDC 4562-70 | DSM
4485 | JCM 1233, AB004746, Enb.sakaza
Enterobacter taylorae VP Farmer et al. 1985 = Enterobacter cancerogenus (senior het-
erotypic synonym) ATCC 35317 | CDC 2126-81
Genus XIII. Erwinia AL
Erwinia amylovora AL (T) (Burrill 1882) Winslow et al. 1920 emend. Hauben et al. 1998
ATCC 15580, U80195, Er.amylovr | ATCC 15580 | CCM 1114 | CFBP 1232 | DSM
30165 | ICMP 1540 | NBRC 12687 | LMG 2024, Z96088, Er.amylov2 | NCPPB 683 |
PDDCC 1540
Erwinia alni VP Surico et al. 1996 -> Brenneria alni PVFi 20 | DSM 11811 | ICMP
12481, AJ223468, Bn.alni1 | NCPPB 3934
Erwinia ananatis AL Serrano 1928 = Erwinia uredovora (junior heterotypic synonym)
-> Pantoea ananatis ATCC 11530 | DSM 30070 | NCPPB 1846
Erwinia aphidicola VP Harada et al. 1998 X 001 | IAM 14479
Erwinia billingiae VP Mergaert et al. 1999 Billing E63 | LMG 2613, Y13249, Er.bllingi
| NCPPB 661
Erwinia cacticida VP Alcorn et al. 1991 -> Pectobacterium cacticida 1 12 | ATCC

49481 | ICMP 1551-66 | ICPB EC1
Erwinia cancerogena AL Urosevic 1966 -> Enterobacter cancerogenus NCPPB 2176
27 3
116
Erwinia carnegieana AL Standring 1942 <- Pectobacterium carnegieana (basonym)

NCPPB 439
Erwinia carotovora subsp. carotovora AL (Jones 1901) Bergey et al. 1923 -> Pec-
tobacterium carotovorum subsp. carotovorum BS 1008 | ATCC 15713, U80197,
Pcb.carcar | CCM 1008 | CCUG 4907 | CECT 225 | CIP 82.83 | DSM 30168 | LMG
2404, Z96089, Pcb.carca2 | M59149 | NCPPB 312
Erwinia carotovora subsp. atroseptica AL (van Hall 1902) Dye 1969 -> Pectobacterium
carotovorum subsp. atrosepticum ATCC 33260 | CFBP 1526 | LMG 2386, Z96090,
Pcb.caratr | NCPPB 549
Erwinia carotovora subsp. betavasculorum VP Thomson et al. 1984 -> Pectobacterium
carotovorum subsp. betavasculorum ATCC 43762, U80198, Pcb.carbe2 | CFBP
1539 | LMG 2466, Z96091, Pcb.carbet | NCPPB 2795
Erwinia carotovora subsp. odorifera VP Gallois et al. 1992 -> Pectobacterium caro-
tovorum subsp. odoriferum CFBP 1878, AF373191 | ICMP 11533 | NCPPB 3839
Erwinia carotovora subsp. wasabiae VP Goto and Mazumoto 1987 -> Pectobacterium
carotovorum subsp. wasabiae SR91 | ATCC 43316, U80199, Pcb.carwas | LMG
8444 | PDDCC 9121
Erwinia chrysanthemi AL Burkholder et al. 1953 -> Pectobacterium chrysanthemi
EC17 | ATCC 11663, U80200, Pcb.chrysn | CFBP 2048 | CIP 82.99 | DAR 35625 |
DSM 4610 | ICMP 5703 | LMG 2804, Z96093, Pcb.chrys2 | NCPPB 402 | PDDCC
5703
Erwinia cypripedii AL (Hori 1911) Bergey et al. 1923 = Pectobacterium cypripedii (ho-
motypic synonym) ATCC 29267, U80201, Pcb.cyprip | DSM 3873 | LMG 2657,
Z96094, Pcb.cypri2 | NCPPB 3994 | PDDCC 1591
Erwinia dissolvens AL (Rosen 1922) Burkholder 1948 -> Enterobacter dissolvens
ATCC 23373
Erwinia herbicola AL (Lohnis 1911) Dye 1964 = Enterobacter agglomerans (senior het-
erotypic synonym) ATCC 33243, U80202, Pn.agglom3 | CIP 82.100 | DSM 4609 |
ICMP 272 | NCPPB 2971
Erwinia mallotivora AL Goto 1976 emend. Hauben et al. 1998 AM1 | ATCC 29573
| CFBP 2503 | DSM 4565 | ICMP 5705 | LMG 2708, Z96084, Er.mallotv | NCPPB
2851 | PDDCC 5705

Erwinia milletiae AL (Kawakami and Yoshida 1920) Magrou 1937 = Enterobacter ag-
glomerans (senior heterotypic synonym) ATCC 33261, U80183, Pn.agglom2 |
NCPPB 2519
Erwinia nigri?uens AL Wilson et al. 1957 -> Brenneria nigri?uens EN 101 | ATCC
13028, U80203, Bn.nigrif1 | DSM 30175 | ICMP 1578 | LMG 2694, Z96095, Bn.ni-
grif2
Erwinia nimipressuralis AL (Carter 1945) Dye 1969 -> Enterobacter nimipressuralis
ATCC 9912
Erwinia paradisiaca AL Fernandez-Borrero and Lopez-Duque 1970 -> Brenneria par-
adisiaca ATCC 33242 | LMG 2542, Z96096, Bn.paradis | NCPPB 2511
Erwinia persicina VP Hao et al. 1990 AJ 2716 | HK 204 | ATCC 35998, U80205, Er.per-
sici | CDC 9108-82 | IAM 12843 | JCM 3704
Erwinia psidii VP Neto et al. 1988 ATCC 49406 | IBSBF 435 | PDDCC 8426
Erwinia pyrifoliae VP Kim et al. 1999 Ep16/96 | CFBP 4172 | DSM 12163
Erwinia quercina AL Hildebrand and Schroth 1967 -> Brenneria quercina ATCC
29281 | DSM 4561 | ICMP 1845 | ICPB EQ 101 | LMG 2724, AJ223469, Bn.quercin
Erwinia rhapontici AL (Millard 1924) Burkholder 1948 emend. Hauben et al. 1998 <-
Pectobacterium rhapontici (basonym) CP/28 | ATCC 29283, U80206, Er.rhapont
| DSM 4484 | ICMP 1582 | ICPB ER 102 | LMG 2688, Z96087, Er.rhapon2 | NCPPB
1578
Erwinia rubrifaciens AL Wilson et al. 1967 -> Brenneria rubrifaciens 533c | Dye FC1 |
ATCC 29291, U80207, Bn.rubrifa | CFBP 1283 | DSM 4483 | ICMP 1915 | ICPB ER
103 | LMG 2709, Z96098, Bn.rubrif2 | NCPPB 2020 | PDDCC 1915
117
Erwinia salicis AL (Day 1924) Chester 1939 -> Brenneria salicis BS 1027 | EX2 |
ATCC 15712, U80210, Bn.salicis | CFBP 802 | DSM 30166 | ICMP 1587 | LMG
2698, Z96097, Bn.salici2 | NCPPB 447
Erwinia stewartii AL (Smith 1898) Dye 1963 -> Pantoea stewartii subsp. stewartii
SS11 | ATCC 8199, U80208, Pn.stewstw | DSM 30176 | IMET 11187
Erwinia tracheiphila AL (Smith 1895) Bergey et al. 1923 emend. Hauben et al. 1998
ATCC 33245 | CFBP 2355 | LMG 2906, Y13250, Y13250, Er.trachep | NCPPB 2452
Erwinia uredovora AL (Pon et al. 1954) Dye 1963 = Erwinia ananatis (senior het-
erotypic synonym) ATCC 19321, U80209, Pn.ananas1 | DSM 30080 | NCPPB 800
Genus XIV. Ewingella VP
Ewingella americana VP (T) Grimont et al. 1984 ATCC 33852 | CCUG 14506 | CDC
1468-78 | CIP 81.94 | CIP 8194 | DSM 4580 | JCM 5911 | LMG 7869
Genus XV. Hafnia AL
Hafnia alvei AL (T) Moller 1954 ATCC 13337, M59155, Haf.alvei | CIP 57.31 | DSM
30163 | NCDC 434-68 | NCTC 8105
Genus XVI. Klebsiella AL
Klebsiella pneumoniae subsp. pneumoniae AL (T) (Schroeter 1886) Trevisan 1887
Serovar 3 | ATCC 13883, Y17656, K.pneupneu | DSM 30104, X87276, K.pneumoni
| IAM 14200 | JCM 1662, AB004753, K.pneumon4 | NCDC 298-53 | NCTC 9633
Klebsiella pneumoniae subsp. ozaenae VP (Abel 1893) Oerskov 1984 <- Klebsiella oza-
enae (basonym) ATCC 11296, Y17654, K.pneuozae | NCTC 5050
Klebsiella pneumoniae subsp. rhinoscleromatis VP (Trevisan 1887) Oerskov 1984 <-
Klebsiella rhinoscleromatis (basonym) ATCC 13884, Y17657, K.pneurhin |
NCTC 5046
Klebsiella granulomatis VP (Arago and Vianna 1913) Carter et al. 1999 <- Calym-
matobacterium granulomatis (basonym) no strain extant, AF009171, AF010251,
AF010252, AF010253
Klebsiella mobilis AL Bascomb et al. 1971 = Enterobacter aerogenes (homotypic syn-
onym) ATCC 13048
Klebsiella ornithinolytica VP Sakazaki et al. 1989 274 -> Raoultella ornithinolytica
DSM 7464 | JCM 6096, AJ251467 | NIH 90-72
Klebsiella oxytoca AL (Flgge 1886) Lautrop 1956 479-2 | ATCC 13182, Y17655,
K.oxytoca2 | DSM 5175 | IAM 14201 | JCM 1665, AB004754, K.oxytoca1
Klebsiella ozaenae AL (Abel 1893) Bergey et al. 1925 -> Klebsiella pneumoniae subsp.
ozaenae ATCC 11296, Y17654, K.pneuozae
Klebsiella planticola VP Bagley et al. 1982 275 = Klebsiella trevisanii (junior heterotypic
synonym) -> Raoultella planticola -> V-236 | ATCC 33531, Y17659, K.plantic4
| CDC 4245-72 | DSM 3069, X93215, K.plantico | IAM 14202 | NBRC 14939 | JCM
7251, AB004755, K.plantic3

Klebsiella rhinoscleromatis AL Trevisan 1887 -> Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884, Y17657, K.pneurhin
Klebsiella terrigena VP Izard et al. 1981 276 -> Raoultella terrigena Gavini L 84 | ATCC
33257, Y17658, K.terrigen | CIP 80-07 | CUETM 77-176 | DSM 2687
Klebsiella trevisanii VP Ferragut et al. 1983 = Klebsiella planticola (senior heterotypic
synonym) Gavini K70 | ATCC 33558, AF129444 | CIP 81-36 | CUETM 78-120 |
DSM 2688
Genus XVII. Kluyvera VP
Kluyvera ascorbata VP (T) Farmer et al. 1981 ATCC 33433, AF310219, AF008579 |
CDC 0648-74, AF176560 | CIP 82.95 | DSM 4611 | IAM 14203
27 4
G rim ont indicat es th at the tran sfe r o f Klebsiella ornith ino ly tic a, K . plantico la an d K. te rrigena t o Raou ltella is not s uppo rt ed in p hy log enet ic
trees based o n rp oB.
27 5
27 6
118
Kluyvera cochleae VP Mller et al. 1996 S3/1-49 | ATCC 51609, AF047187, Klu.cochle
| DSM 9406
Kluyvera cryocrescens VP Farmer et al. 1981 ATCC 33435, AF310218 | CDC 2065-78 |
CIP 82.96 | DSM 4588 | IAM 14204
Kluyvera georgiana VP Mller et al. 1996 ATCC 51603, AF047186, Klu.georgi | CDC
2891-76 | CDC enteric group 36/37 | DSM 9409
Genus XVIII. Leclercia VP
Leclercia adecarboxylata VP (T) (Leclerc 1962) Tamura et al. 1987 <- Escherichia ade-
carboxylata (basonym) ATCC 23216 | DSM 5077 | IAM 14240 | JCM 1667
Genus XIX. Leminorella VP
Leminorella grimontii VP (T) Hickman-Brenner et al. 1985 81H-380 | ATCC 33999 | CDC
1944-81 | DSM 5078, AJ233421
Leminorella richardii VP Hickman-Brenner et al. 1985 ATCC 33998 | CDC 0978-82
Genus XX. Moellerella VP
Moellerella wisconsensis VP (T) Hickman-Brenner et al. 1984 2896-78 | ATCC 35017 |
DSM 5076
Genus XXI. Morganella AL
Morganella morganii subsp. morganii AL (T) (Winslow et al. 1919) Fulton 1943 = Pro-
teus morganii (homotypic synonym) M 11 | ATCC 25830 | CIP A231, AJ301681 |
DSM 30164 | JCM 1672, AB089243 | NBRC 3848 | NCIB 235 | NCTC 235
Morganella morganii subsp. sibonii VP Jensen et al. 1992 8103-85 | AB 2048 | ATCC
49948
Genus XXII. Obesumbacterium AL
Obesumbacterium proteus AL (T) Shimwell 1963 42 | ATCC 12841 | DSM 2777,
AJ233422 | NCIB 8771
Genus XXIII. Pantoea VP
Pantoea agglomerans VP (T) (Ewing and Fife 1972) Gavini et al. 1989 <- Enterobacter
agglomerans (basonym) ATCC 27155 | CDC 1461-67 | DSM 3493 | ICPB 3435 |
JCM 1236, AB004691, Pn.agglomr | LMG 1286 | NCTC 9381
Pantoea ananatis VP (Serrano 1928) Mergaert et al. 1993 <- Erwinia ananatis (ba-
sonym) ATCC 33244, U80196, Pn.ananat2 | LMG 2665, Z96081, Pn.ananati |
Pantoea citrea VP Kageyama et al. 1992 SHS 2003 | ATCC 31623
Pantoea dispersa VP Gavini et al. 1989 ATCC 14589 | DSM 30073 | LMG 2603
Pantoea punctata VP Kageyama et al. 1992 SHS 2006 | ATCC 31626
Pantoea stewartii subsp. stewartii VP (Smith 1898) Mergaert et al. 1993 <- Erwinia
stewartii (basonym) ATCC 8199 | DSM 30176 | IMET 11187 | LMG 2715, Z96080,
Pn.stewst2
Pantoea stewartii subsp. indologenes VP Mergaert et al. 1993 ICMP 77 | LMG 2632,
Y13251, Pn.stewind | NCPPB 2280
Pantoea terrea VP Kageyama et al. 1992 SHS 2008 | ATCC 31628
Genus XXIV. Pectobacterium AL
Pectobacterium carotovorum subsp. carotovorum VP (T) (Jones 1901) Hauben et al. 1999
<- Erwinia carotovora subsp. carotovora (basonym) 904 | BS 1008 | ATCC 15713,
U80197, Pcb.carcar | CCM 1008 | DSM 30168 | LMG 2404, Z96089, Pcb.carca2 |
NCPPB 312
Pectobacterium carotovorum subsp. atrosepticum VP (van Hall 1902) Hauben et al.
1999 <- Erwinia carotovora subsp. atroseptica (basonym) -> Pectobacterium
atrosepticum ATCC 33260 | LMG 2386, Z96090, Pcb.caratr | NCPPB 549
Pectobacterium carotovorum subsp. betavasculorum VP (Thomson et al. 1984) Hauben
et al. 1999 <- Erwinia carotovora subsp. betavasculorum (basonym) -> Pecto-
bacterium betavasulorum ATCC 43762, U80198, Pcb.carbe2 | CFBP 1539 | LMG
2464, Z96091, Pcb.carbet | NCPPB 2795
119
Pectobacterium carotovorum subsp. odoriferum VP (Gallois et al. 1992) Hauben et

al. 1999 <- Erwinia carotovora subsp. odorifera (basonym) CFBP 1878 | LMG
17566, AJ223407, Pcb.carodo
Pectobacterium carotovorum subsp. wasabiae VP (Goto and Mazumoto 1987) Hauben
et al. 1999 <- Erwinia carotovora subsp. wasabiae (basonym) -> Pectobacterium
wasabiae SR 91 | ATCC 43316, U80199, Pcb.carwas | ICMP 9121, AJ223408 |
PDDCC 9121
Pectobacterium atrosepticum VP (van Hall 1902) Gardan et al. 2003 <- Pectobacterium
carotovorum subsp. atrosepticum (basonym) CFBP 1526 | ICMP 1526, Z96090 |
LMG 2386 | NCPPB 549
Pectobacterium betavasulorum VP (Thomson et al. 1984) Gardan et al. 2003 <- Pecto-
bacterium carotovorum subsp. betavasculorum (basonym) ATCC 43762, U80198
| CFBP 2122 | ICMP 4226 | LMG 2466, Z96091 | NCPPB 2795
Pectobacterium cacticida VP (Alcorn et al. 1991) Hauben et al. 1999 <- Erwinia cacti-
cida (basonym) 1 12 | ATCC 49481, AJ223409 | ICPB EC186 | LMG 17936
Pectobacterium carnegieana AL (Standring 1942) Brenner et al. 1973 -> Erwinia
carnegieana NCPPB 439
Pectobacterium chrysanthemi AL (Burkholder et al. 1953) Brenner et al. 1973 emend.
Hauben et al. 1998 = Erwinia chrysanthemi (homotypic synonym) ATCC 11663,
U80200, Pcb.chrysn | CIP 82.99 | DAR 35625 | DSM 4610 | EC17 | LMG 2804,
Z96093, Pcb.chrys2 | NCPPB 402 | PDDCC 5703
Pectobacterium cypripedii AL (Hori 1911) Brenner et al. 1973 emend. Hauben et
al. 1998 = Erwinia cypripedii (homotypic synonym) ATCC 29267, U80201,
Pcb.cyprip | DSM 3873 | ICMP 1591 | LMG 2657, Z96094, Pcb.cypri2 | NCPPB
3994 | PDDCC 1591
Pectobacterium rhapontici AL (Millard 1924) Patel and Kulkarni 1951 -> Erwinia
rhapontici CP/28 | ATCC 29283, U80206, Er.rhapont | DSM 4484 | ICMP 1582 |
ICPB ER 102 | LMG 2688, Z96087, Er.rhapon2 | NCPPB 1578
Pectobacterium wasabiae VP (Goto and Mazumoto 1987) Gardan et al. 2003 <- Erwinia
carotovora subsp. wasabiae (basonym) SR 91 | ATCC 43316, U80199 | CFBP
3304 | ICMP 9121, AJ223408 | LMG 8404 | NCPPB 3701 | PDDCC 9121
Genus XXV. "Phlomobacter"
Candidatus "Phlomobacter fragariae" U91515
Genus XXVI. Photorhabdus VP
Photorhabdus luminescens subsp. luminescens VP (T) (Thomas and Poinar 1979) Boe-
mare et al. 1993 <- Xenorhabdus luminescens (basonym) Hb | ATCC 29999,
D78005, Pr.lumine4 | DSM 3368, X82248, Pr.lumines
Photorhabdus luminescens subsp. akhurstii VP Fischer-Le Saux et al. 1999 FRG04 |
CIP 105564, AJ007359
Photorhabdus luminescens subsp. laumondii VP Fischer-Le Saux et al. 1999 TT01 | CIP
105565, AJ007404
Phororhabdus asymbiotica VP Fischer-Le Saux et al. 1999 3265-86, Z76755 | ATCC
43950
Photorhabdus temperata VP Fischer-Le Saux et al. 1999 XlNach | CIP 105563,
AJ007405
Genus XXVII. Plesiomonas AL
Plesiomonas shigelloides AL (T) (Bader 1954) Habs and Schubert 1962 M51 | RH 798
| ATCC 14029, M59159, Ple.shigel | ATCC 14029, X74688, Ple.shige4 | CDC
3085-55 | DSM 8224 | NCIB 9242

Genus XXVIII. Pragia VP
Pragia fontium VP (T) Aldova et al. 1988 HG16 | CCUG 180 | CDC 963-84 | CNCTC
Eb11/82 | DRL 20125 | DSM 5563, AJ233424
Genus XXIX. Proteus AL
Proteus vulgaris AL (T) Hauser 1885 ATCC 13315 | DSM 30118, AJ233425 | NBRC 3851
| NCIB 4175
120
Proteus hauseri VP OHara et al. 2000 ATCC 700826 | CDC 1732-80

Proteus inconstans AL (Orstein 1920) Shaw and Clarke 1955 ATCC 9886
Proteus mirabilis AL Hauser 1885 ATCC 29906, AF008582 | CDC PR 14 | DSM 4479 |
NCTC 11938
Proteus morganii AL (Winslow et al. 1919) Yale 1939 = Morganella morganii (homo-
typic synonym) ATCC 25830 | DSM 30164 | NBRC 3848 | NCIB 235 | NCTC 235
Proteus myxofaciens AL Cosenza and Podgwaite 1966 ATCC 19692 | DSM 4482
Proteus penneri VP Hickman et al. 1983 ATCC 33519 | CDC 1808-73 | DSM 4544
Proteus rettgeri AL (Hadley et al. 1918) Rustigian and Stuart 1943 = Providencia rettgeri
(homotypic synonym) Biovar 2a | ATCC 29944 | DSM 4542
Genus XXX. Providencia AL
Providencia alcalifaciens AL (T) (de Salles Gomes 1944) Ewing 1962 Serovar 019:H2 |
ATCC 9886 | DSM 30120
Providencia friedericiana VP Mller et al. 1986 = Providencia rustigianii (senior het-
erotypic synonym) 1 33 | DSM 2620
Providencia heimbachae VP Mller et al. 1986 MUA 2-110 | ATCC 35613 | CDC
8025-83 | DSM 3591
Providencia rettgeri AL (Hadley et al. 1918) Brenner et al. 1978 = Proteus rettgeri
(homotypic synonym) Biovar 2a | ATCC 29944 | DSM 4542
Providencia rustigianii VP Hickman-Brenner et al. 1983 = Providencia friedericiana
(junior heterotypic synonym) ATCC 33673 | CDC 0132-68 | DSM 4541
Providencia stuartii AL (Buttiaux et al. 1954) Ewing 1962 ATCC 29914, AF008581 |
CDC 2896-68 | DSM 4539
Genus XXXI. Rahnella VP
Rahnella aquatilis VP (T) Izard et al. 1981 133 | ATCC 33071 | CIP 78-65 | CUETM 75.115
| DSM 4594, AJ233426
Genus XXXII. Raoultella VP

Raoultella planticola VP (T) (Bagley et al. 1982) Drancourt et al. 2001 <- Klebsiella
planticola (basonym) V-236 | ATCC 33531, Y17659, K.plantic4 | ATCC 33531,
AF129443 | CDC 4245-72 | CIP 100751 | DSM 3069, X93215, K.plantico | IAM
14202 | NBRC 14939 | JCM 7251, AB004755, K.plantic3
Raoultella ornithinolytica VP (Sakazaki et al. 1989) Drancourt et al. 2001 <- Klebsiella
ornithinolytica (basonym) ATCC 31898, AF129441 | CIP 103576 | DSM 7464 |
JCM 6096, AJ251467 | NIH 9072
Raoultella terrigena VP (Izard et al. 1981) Drancourt et al. 2001 <- Klebsiella terrigena
(basonym) Gavini L 84 | ATCC 33257, AF129442, Y17658, K.terrigen | CIP 80-07
| CIP 103576 | CUETM 77-176 | DSM 2687
Genus XXXIII. Saccharobacter VP

Saccharobacter fermentatus VP (T) Yaping et al. 1990 WVB 8512
Genus XXXIV. Salmonella AL 277
Salmonella enterica subsp. enterica (T) (ex Kauffmann and Edwards 1952) Le Minor
and Popoff 1987 = Salmonella choleraesuis subsp. choleraesuis (heterotypic syn-
onym) = Salmonella enteritidis (heterotypic synonym) = Salmonella paratyphi
(heterotypic synonym) = Salmonella typhi (heterotypic synonym) = Salmonella ty-
phimurium (heterotypic synonym) LT2 | ATCC 43971 | CIP 60.62 | NCIMB 11450
| NCTC 8385
27 7
In a Requ est f or a n O pin ion published in 1 987, L e Minor and Pop off propo sed re pla cem ent o f the ty pe s pe cies o f Salmo nella (S alm onella
choleraesuis subsp. choleraesuis) with S almon ella ente rica a s the f ormer was c on sidered to be a s ou rc e of c onfus ion. A lth ough t he Requ es t
was d enied b y the Jud icial Co mmission, their propo sal resulted in an a lterna tiv e n aming co nve ntion wh ic h h as foun d wides pread end orse men t
in the public hea lth co mmu nity. Th is mat ter was revisited in July 2002 by the J udic ial Com mis s ion during the IUMS Con gress in res pons e to
several new Requ est s for an O pinio n, a nd will likely result in a dec is io n to replac e th e ty pe s tra in Sa lm onella c holeraes uis s ub sp. c ho lerae su is
with Salmon ella ente rica subsp ente rica stain LT2, while pres erv ing th e fo rm er rath er th an pla cing it on the lis t o f rejec ted nam es . We v iew the
six subspecie s o f Sa lm onella ch ole ra esu is as de preca ted, as ind ic ated by the dagg er sy mb ol ( ) prece din g the se nam es . Rea ders are also
ad vise d that na mes Sa lmo nella en teritidis, S almon ella parat yph i, S alm one lla typ hi an d Sa lmo nella p araty phi a re s y nony ms of S alm onella
en terica subsp. ente rica an d refer to speci?c se ro vars. The se nam es hav e n ot be en d eprec ated at t his time as they rem ain in us e by s ome
pu blic he alt h re portin g agen cies.
121
Salmonella enterica subsp. arizonae (Borman 1957) Le Minor and Popoff 1987 <-
Salmonella choleraesuis subsp. arizonae (basonym) ATCC 13314 | CCUG 6322 |
CIP 82.30 | DSM 9386 | NCTC 8297
Salmonella enterica subsp. bongori Le Minor et al. 1985) Le Minor and Popoff 1987
<- Salmonella choleraesuis subsp. bongori (basonym) -> Salmonella bongori,
AF029227, S.bongori1 ATCC 43975 | CIP 82.33
Salmonella enterica subsp. diarizonae (Le Minor et al. 1985) Le Minor and Popoff
1987 <- Salmonella choleraesuis subsp. diarizonae (basonym) ATCC 43973 |
CCUG 30040 | CIP 82.31 | NCTC 10060
Salmonella enterica subsp. houtenae (Le Minor et al. 1985) Le Minor and Popoff 1987
<- Salmonella choleraesuis subsp. houtenae (basonym) ATCC 43974 | CCUG
30041 | CIP 82.32 | DSM 9221 | NCTC 12418
Salmonella enterica subsp. indica (Le Minor et al. 1985) Le Minor and Popoff 1987 <-
Salmonella choleraesuis subsp. indica (basonym) K1240 | ATCC 43976 | CCUG
30038 | CIP 102501 | NCTC 12420
Salmonella enterica subsp. salamae (Le Minor et al. 1985) Le Minor and Popoff 1987
<- Salmonella choleraesuis subsp. salamae (basonym) ATCC 43972 | CCUG
30039 | CIP 8229 | DSM 9220 | NCTC 5773
Salmonella bongori VP (Le Minor et al. 1985) Reeves et al. 1989 <- Salmonella choler-
aesuis subsp. bongori (basonym) 66:z41:-, AF029227, S.bongori1 | ATCC 43975
| CIP 82.33
Salmonella choleraesuis subsp. choleraesuis AL (Smith 1894) Weldin 1927 <- (ba-
sonym) = Salmonella enterica subsp. enterica (heterotypic synonym) ATCC
13312 | ATCC 13314 | CIP 55-133 | NCTC 5735
Salmonella choleraesuis subsp. arizonae VP (Borman 1957) Le Minor et al. 1985 <-
Salmonella arizonae (basonym) -> Salmonella enterica subsp. arizonae Serovar
51:z4,z23 | ATCC 13314 | CIP 82.30 | DSM 9386 | NCTC 8297
Salmonella choleraesuis subsp. bongori VP Le Minor et al. 1985 -> Salmonella bon-
gori CIP 82.33
Salmonella choleraesuis subsp. diarizonae VP Le Minor et al. 1985 -> Salmonella
enterica subsp. diarizonae CIP 82.31 | NCTC 10060
Salmonella choleraesuis subsp. houtenae VP Le Minor et al. 1985 -> Salmonella en-
terica subsp. houtenae Serovar 45:g,z51 | ATCC 43974 | CIP 82.32 | DSM 9221
Salmonella choleraesuis subsp. indica VP Le Minor et al. 1987 -> Salmonella enterica
subsp. indica K1240 | CIP 102501
Salmonella choleraesuis subsp. salamae VP Le Minor et al. 1985 -> Salmonella enter-
ica subsp. salamae CIP 82.29 | DSM 9220 | NCTC 5773
Salmonella arizonae AL (Bowman 1957) Kauffman 1964 -> Salmonella choleraesuis
subsp. arizonae ATCC 13314 | NCTC 8297
Salmonella enteritidis AL (Gaertner 1888) Castellani and Chalmers 1919 = Salmonella
enterica subsp. enterica (heterotypic synonym) ATCC 13076
Salmonella paratyphi VP Ezaki et al. 2000 = Salmonella enterica subsp. enterica (het-
erotypic synonym) KI 1015 | NCTC 5702
Salmonella typhi AL (Schroeter 1886) Warren and Scott 1930 = Salmonella enterica
subsp. enterica (heterotypic synonym) ATCC 19430, Z47544, S.typhi2
Salmonella typhimurium AL (Loef? er 1892) Castellani and Chalmers 1919 = Salmonella
enterica subsp. enterica (heterotypic synonym) ATCC 13311, X80681, S.ty-
murium | NCTC 74
Genus XXXV. Samsonia VP
Samsonia erythrinae VP (T) Sutra et al. 2001 CFBP 5236, AF273037 | ICMP 13937
Genus XXXVI. Serratia AL
Serratia marcescens subsp. marcescens AL (T) Bizio 1823 ATCC 13880, M59160,
Ser.marces | CCM 303 | DSM 30121 | DSM 47 | NCDC 813-60 | NCIB 9155 | NCTC
10211
122
Serratia marcescens subsp. sakuensis VP Ajithkumar et al. 2003 KRED, AB061685 |

CIP 107489 | JCM 11315
Serratia entomophila VP Grimont et al. 1988 A1 | ATCC 4370 | DSM 12358, AJ233427
Serratia ?caria VP Grimont et al. 1981 4024 | Serovar 0:1 | ATCC 33105 | CIP 79.23 |
DSM 4569 | ICPB 4050 | JCM 1241, AB004745, Ser.? cari
Serratia fonticola AL Gavini et al. 1979 ATCC 29844 | CIP 78.64 | CUETM 77.165 | DSM
4576, AJ233429
Serratia grimesii VP Grimont et al. 1983 Grimont 503 | ATCC 14460 | DSM 30063,
AJ233430 | NBRC 13537 | NCTC 10422
Serratia liquefaciens AL (Grimes and Hennerty 1931) Bascomb et al. 1971 = Serra-
tia proteamaculans subsp. proteamaculans (senior heterotypic synonym) ATCC
27592 | CDC 57 | DSM 4487 | JCM 1245, AB004752, Ser.liqfac
Serratia marinorubra AL ZoBell and Upham 1944 = Serratia rubidaea (homotypic syn-
onym) ATCC 27593
Serratia odorifera AL Grimont et al. 1978 CDC 1979-77 | CIP 79.01 | DSM 4582,
AF286870, AJ233432 | ICPB 3995 | NCTC 11214
Serratia plymuthica AL (Lehmann and Neumann 1896) Breed et al. 1948 K-7 | ATCC
183 | DSM 4540, AF286872, AJ233433
Serratia proteamaculans subsp. proteamaculans AL (Paine and Stans?eld 1919) Grimont
et al. 1978 = Serratia liquefaciens (junior heterotypic synonym) ATCC 19323 |
DSM 4543, AJ233434 | ICMP 1724 | NCPPB 245 | NCTC 394
Serratia proteamaculans subsp. quinovora VP Grimont et al. 1983 -> Serratia quinivo-
rans 4364 | ATCC 33765 | CIP 8195 | DSM 4597, AJ233435
Serratia quinivorans VP (Grimont et al. 1983) Ashelford et al. 2002 <- Serratia
proteamaculans subsp. quinovora (basonym) 4364 | ATCC 33765 | DSM 4597,
AJ233435, AJ233435
Serratia rubidaea AL (Stapp 1940) Ewing et al. 1973 = Serratia marinorubra (homo-
typic synonym) Ewing 2199-72 | ATCC 27593 | DSM 4480 | JCM 1240, AB004751,
Ser.rubida
Genus XXXVII. Shigella AL
Shigella dysenteriae AL (T) (Shiga 1898) Castellani and Chalmers 1919 ATCC 13313,
X96966, Shi.dysnt2 | DSM 4781 | NCTC 4837
Shigella boydii AL Ewing 1949 P288 | Serovar 2 | ATCC 8700 | DSM 7532
Shigella ?exneri AL Castellani and Chalmers 1919 Serovar 2a | ATCC 29903, X96963,
Shi.? xne2 | DSM 4782
Shigella sonnei AL (Levine 1920) Weldin 1927 ATCC 29930 | DSM 5570
Genus XXXVIII. Sodalis VP
Sodalis glossinidius VP (T) Dale and Maudlin 1999 M1 | NCIMB 13495
Genus XXXIX. Tatumella VP
Tatumella ptyseos VP (T) Hollis et al. 1982 H36 | ATCC 33301 | CDC 9591-7 | CDC D6168
| DSM 5000, AJ233437
Genus XL. Trabulsiella VP

Trabulsiella guamensis VP (T) McWhorter et al. 1992 ATCC 49490 | CDC 0370-85
Genus XLI. Wigglesworthia VP
Wigglesworthia glossinidia VP (T) Aksoy 1995 no culture isolated
Genus XLII. Xenorhabdus AL
Xenorhabdus nematophila subsp. nematophila AL (T) (Poinar and Thomas 1965) Thomas
and Poinar 1979 ATCC 19061, D78009, Xen.nemph3 | DSM 3370, X82251,
Xen.nemphl
Xenorhabdus nematophila subsp. beddingii VP Akhurst 1986 -> Xenorhabdus bed-
dingii Q58 | ATCC 49542 | DSM 4764, X82254 | DSM 4764, D78006 | UQB 2871
Xenorhabdus nematophila subsp. bovienii VP Akhurst 1983 -> Xenorhabdus bovienii
T228 | ATCC 35271, D78007, Xen.bovie2 | DSM 4766, X82252, Xen.bovien | UQM
2210
123
Xenorhabdus nematophila subsp. poinarii VP Akhurst 1983 -> Xenorhabdus subsp.

poinarii 61 | G1 | ATCC 3527 | DSM 4768, D78010 | DSM 4768, X82253 | UQM
2216
Xenorhabdus beddingii VP (Akhurst 1986) Akhurst and Boemare 1993 <- Xenorhabdus
nematophila subsp. beddingii (basonym) Q58 | ATCC 49542 | DSM 4764, D78006,
Xen.beddn2 | DSM 4764, X82254, Xen.beddng | UQM 2871
Xenorhabdus bovienii VP (Akhurst 1983) Akhurst and Boemare 1993 <- Xenorhabdus
nematophila subsp. bovienii (basonym) T228 | ATCC 35271, D78007, Xen.bovie2
| DSM 4766, X82252, Xen.bovien | UQM 2210
Xenorhabdus japonica VP Nishimura et al. 1995 SK-1, Z76739, Xen.japon2 | IAM

14265, D78008, Xen.japoni
Xenorhabdus luminescens AL Thomas and Poinar 1979 -> Photorhabdus luminescens
ATCC 29999, D78005, Pr.lumine4 | DSM 3368, X82248, Pr.lumines
Xenorhabdus poinarii VP (Akhurst 1983) Akhurst and Boemare 1993 <- Xenorhabdus
nematophila subsp. poinarii (basonym) 61 | G1 | ATCC 3527 | DSM 4768, D78010,
Xen.poina2 | DSM 4768, X82253, Xen.poinar | UQM 2216
Genus XLIII. Yersinia AL
Yersinia pestis AL (T) (Lehmann and Neumann 1896) van Loghem 1944 ATCC 19428 |
NCTC 5923, AF366383
Yersinia aldovae VP Bercovier et al. 1984 Al 19955 | IP 6005 | ATCC 35236, X75277,
Yer.aldova | CDC 669-83 | CNY 6005
Yersinia bercovieri VP Wauters et al. 1988 ATCC 43970, AF366377 | CDC 2475-87 |
CNY 7506 | WAIP 208
Yersinia enterocolitica subsp. enterocolitica AL (Schleifstein and Coleman 1939) Fred-
eriksen 1964 Biovar 1b | ATCC 9610, M59292, Yer.entero | DSM 4780
Yersinia enterocolitica subsp. palearctica VP Neubauer et al. 2000 Y11 | DSM 13030
Yersinia frederiksenii VP Ursing et al. 1981 6175 | ATCC 33641, AF366379 | CIP 80-29
Yersinia intermedia VP Brenner et al. 1981 3953 | Bottone 48 | Chester 48 | ATCC 29909,
AF366380
Yersinia kristensenii VP Bercovier et al. 1981 105 | ATCC 33638, AF366381 | CIP 80-30
Yersinia mollaretii VP Wauters et al. 1988 ATCC 43969, AF366382 | CDC 2465-87 |
CNY 7263 | WAIP 204
Yersinia philomiragia AL Jensen et al. 1969 -> Francisella philomiragia ATCC 25015
| DSM 7535
Yersinia pseudotuberculosis subsp. pseudotuberculosis AL (Pfeiffer 1889) Smith and

Thal 1965 Serovar I | ATCC 29833, AF366375 | CIP 55.85 | DSM 8992 | NCTC
10275
Yersinia pseudotuberculosis subsp. pestis (Lehmann and Neumann 1896) Bercovier et
al. 1981 nom. rej. NCTC 5923
Yersinia rohdei VP Aleksic et al. 1987 H271-36/78 | ATCC 43380, AF366384 | CDC
3022-85
Yersinia ruckeri AL Ewing et al. 1978 ATCC 29473, X75275, Yer.rucker
Genus XLIV. Yokenella VP
Yokenella regensburgei VP (T) Kosako et al. 1985 = Koserella trabulsii (junior heterotypic
synonym) JCM 2403 | NIH 725-83
Order XIV. PasteurellalesNP
Family I. Pasteurellaceae VP
Genus I. Pasteurella AL (T)
Pasteurella multocida subsp. multocida AL (T) (Lehmann and Neumann 1899) Rosen-
busch and Merchant 1939 NCTC 10322, AY078999, M35018, Pas.multoc
Pasteurella multocida subsp. gallicida VP Mutters et al. 1985 NCTC 10204, AY078998
Pasteurella multocida subsp. septica VP Mutters et al. 1985 CIP A125 | NCTC 11995 ,
AY079000
Pasteurella aerogenes AL McAllister and Carter 1974 P-172-71 | ATCC 27883, M75048,
Pas.aeroge | ATCC 27883, U66491, Pas.aerog2 | DSM 10153
124
Pasteurella anatis VP Mutters et al. 1985 -> Gallibacterium anatis F149 | ATCC 43329,
M75054, Pas.anatis | CCUG 15563 | NCTC 11413
Pasteurella avium VP (Hinz and Kunjara 1977) Mutters et al. 1985 <- Haemophilus
avium (basonym) ATCC 29546 | CCUG 12833 | IPDH 2654
Pasteurella bettyae VP Sneath and Stevens 1990 A271 | A99 | ATCC 23273 | CCUG 2042,
L06088, Pas.bettya | CDC 41-5568 | NCTC 10535
Pasteurella caballi VP Schlater et al. 1990 83851 | ATCC 49197
Pasteurella canis VP Mutters et al. 1985 ATCC 43326, M75049, Pas.canis | NCTC
11621
Pasteurella dagmatis VP Mutters et al. 1985 ATCC 43325, M75051, Pas.dagmat | NCTC
11617
Pasteurella gallicida AL (Burrill 1883) Buchanan 1925 NCTC 10322
Pasteurella gallinarum AL Hall et al. 1955 ATCC 13361 | NCTC 11188, M75059,
Pas.gallin
Pasteurella granulomatis VP Ribeiro et al. 1990 -> Mannheimia granulomatis 26 |
ATCC 49244, AF053902
Pasteurella haemolytica AL Newsome and Cross 1932 -> Mannheimia haemolytica
Biovar A | serovar 2 | DSM 10531 | NCTC 9380, M75080, Mnh.haeml9
Pasteurella langaaensis VP Mutters et al. 1985 ATCC 43328, M75053, Pas.langaa |
NCTC 11411
Pasteurella lymphangitidis VP Sneath and Stevens 1990 71 | A82 | Jayaraman strain I |
NCTC 10547
Pasteurella mairii VP Sneath and Stevens 1990 68 | A10 | D1187 | CCUG 27189,
AF024532, Pas.mairii | CCUG 27189, L06089, Pas.mair89 | LPHL 5143/70 | NCTC
10699
Pasteurella pneumotropica AL Jawetz 1950 NCTC 8141, M75083, Pas.pneumo
Pasteurella skyensis VP Birkbeck et al. 2002 95A1, AJ243202 | NCIMB 13593 | NCTC
13204
Pasteurella stomatis VP Mutters et al. 1985 ATCC 43327, M75050, Pas.stomat | NCTC
11623
Pasteurella testudinis VP Snipes and Biberstein 1982 ATCC 33688 | CCUG 19802,
L06090, Pas.testud | NCTC 12150 | UCD 90-23-79n
Pasteurella trehalosi VP Sneath and Stevens 1990 A92 | S110 | serovar 3/T15 | ATCC
29703 | NCTC 10370
Pasteurella ureae AL Jones 1962 -> Actinobacillus ureae Henrikson 3520/59, M75075
| ATCC 25976 | DSM 5568 | NCTC 10219
Pasteurella volantium VP Mutters et al. 1985 Lovell 6 | ATCC 14385 | NCTC 3438,
M75070, Pas.volant
Genus II. Actinobacillus AL
Actinobacillus lignieresii AL (T) Brumpt 1910 NCTC 4189, M75068, Acb.lignie
Actinobacillus actinomycetemcomitans AL (Klinger 1912) Topley and Wilson 1929 ->
Haemophilus actinomycetemcomitans Serovar c | ATCC 33384, M75039, H.acti-
nomy | DSM 8324 | NCTC 9710
Actinobacillus arthritidis VP Christensen et al. 2002 CCUG 24862, AF247712 | ATCC
13376
Actinobacillus capsulatus AL Arseculeratne 1962 22586 | Frederiksen P243 | ATCC
51571 | CCUG 12396, M75069, Acb.cap396 | CIP 103283 | NCTC 11408, M75062,
Acb.cap408
Actinobacillus delphinicola VP Foster et al. 1996 M906/93, X89378 | DSM 11374 |
NCTC 12870
Actinobacillus equuli subsp. equuli AL (van Straaten 1918) Haupt 1934 278 PM 30/53 |
ATCC 19392 | NCTC 8529, M75072, Acb.equuli
Actinobacillus equuli subsp. haemolyticus VP Christensen et al. 2002 F 154, AF247716
| CCUG 19799 | NCTC 13195
27 8
Th is subspec ie s was aut omat ically cre ated und er Rule 4 0d (fo rm erly Rule 46, IJS EM 50: 22 392 244)
125
Actinobacillus hominis VP Friis-Moeller 1985 12 | P 578 | CCUG 19800, L06076,

Acb.hom800 | NCTC 11529
Actinobacillus indolicus VP Moeller et al. 1996 46KC2, U65584, Acb.indoli
Actinobacillus minor VP Moeller et al. 1996 NM305, U65582, Acb.minor1
Actinobacillus muris VP Bisgaard 1988 80-443D | CCUG 16938, AF024526,
Acb.muris1
Actinobacillus pleuropneumoniae VP (Shope 1964) Pohl et al. 1983 <- Haemophilus
pleuropneumoniae (basonym) HK 405 | Shope 4074 | ATCC 27088, M75074,
Acb.plpneu | CCM 5869, D30030, Acb.plpne2
Actinobacillus porcinus VP Moeller et al. 1996 NM319, U65583, Acb.porcin
Actinobacillus rossii VP Sneath and Stevens 1990 A55 | A68 | P624 | Ross 192 | ATCC
27072 | NCTC 10801
Actinobacillus scotiae VP Foster et al. 1998 M2000/95/1, Y09653 | CIP 105697 | NCTC
12922
Actinobacillus seminis VP (ex Baynes and Simmons 1960) Sneath and Stevens 1990 5 |
A51 | A65 | Simmons K3844-C | ATCC 15768, M75047, Acb.semini | NCTC 10851
Actinobacillus succinogenes VP Guettler et al. 1999 130Z, AF024525, Acb.succin |
ATCC 55618
Actinobacillus suis AL van Dorssen and Jaartsveld 1962 ATCC 33415 | ATCC 49261 |
CCM 5586, AF015299, Acb.suis2
Actinobacillus ureae VP (Jones 1962) Mutters et al. 1986 <- Pasteurella ureae (ba-
sonym) Henriksen 3520/59, M75075, Acb.ureae | ATCC 25976 | DSM 5568 | NCTC
10219
Genus III. Gallibacterium VP
Gallibacterium anatis VP (T) (Mutters et al. 1985) Christensen et al. 2003 <- Pasteurella
anatis (basonym) F 149, AF228001 | ATCC 43329, M75054 | CCUG 15563 | NCTC
11413
Genus IV. Haemophilus AL
Haemophilus in?uenzae AL (T) (Lehmann and Neumann 1896) Winslow et al. 1917
ATCC 33391, M35019, H.in?uenz | DSM 4690 | NCTC 8143
Haemophilus actinomycetemcomitans VP (Klinger 1912) Potts et al. 1985 <-
Actinobacillus actinomycetemcomitans (basonym) ATCC 33384, M75039,
H.actinomy | DSM 8324 | NCTC 9710
Haemophilus aegyptius AL (Trevisan 1889) Pittman and Davis 1950 180-a | ATCC 11116
| NCTC 8502, M75044, H.aegyptiu
Haemophilus aphrophilus AL Khairat 1940 ATCC 33389, M75041, H.aphrophi | CIP

70.73 | NCTC 5906
Haemophilus avium AL Hinz and Kunjara 1977 -> Pasteurella avium 2654 | ATCC
29546
Haemophilus ducreyi AL (Neveu-Lemaire 1921) Bergey et al. 1923 X2 | CIP 542,
M75078, H.ducreyi | DSM 8925 | NCTC 10945
Haemophilus equigenitalis VP Taylor et al. 1983 -> Taylorella equigenitalis 61717/77
| NCTC 11184, X68645, Tay.eqgeni
Haemophilus felis VP Inzana et al. 1999 TI189 | ATCC 49733, AF224292

Haemophilus haemoglobinophilus AL (Lehmann and Neumann 1907) Murray 1939
NCTC 1659, M75064, H.haemoglo
Haemophilus haemolyticus AL Bergey et al. 1923 NCTC 10659, M75045, H.haemolyt
Haemophilus paracuniculus VP Targowski and Targowski 1984 ATCC 29986, M75061,
H.paracuni
Haemophilus paragallinarum AL Biberstein and White 1969 ATCC 29545 | NCTC
11296, M75057, H.paragall
Haemophilus parahaemolyticus AL Pittman 1953 536 | ATCC 10014 | NCTC 8479,
M75073, H.parahaem
Haemophilus parain?uenzae AL Rivers 1922 ATCC 33392, M75081, H.parain? | DSM
8978 | NCTC 7857
126
Haemophilus paraphrohaemolyticus AL Zinnemann et al. 1971 NCTC 10670, M75076,

H.pphrhaem
Haemophilus paraphrophilus AL Zinnemann et al. 1968 ATCC 29241, M75042,
H.paraphrF | NCTC 10557
Haemophilus parasuis AL Biberstein and White 1969 1374 | ATCC 19417 | NCTC 4557,
M75065, H.parasuis
Haemophilus piscium AL Snieszko et al. 1950 ATCC 10801
Haemophilus pleuropneumoniae AL Shope 1964 -> Actinobacillus pleuropneumoniae
ATCC 27088
Haemophilus segnis AL Kilian 1977 ATCC 33393, M75043, H.segnis | NCTC 10977
Haemophilus vaginalis AL Gardner and Dukes 1955 -> Gardnerella vaginalis ATCC
14018, M58744 | CCUG 3717 | DSM 4944 | NCTC 10915
Genus V. Lonepinella VP
Lonepinella koalarum VP (T) Osawa et al. 1996 LX-1 | ACM 3666, Y17189, Lp.koalaru
| DSM 10053 | UQM 3666
Genus VI. Mannheimia VP

Mannheimia haemolytica VP (T) (Newsome and Cross 1932) Angen et al. 1999 <- Pas-
teurella haemolytica (basonym) Biovar A | serovar 2 | DSM 10531 | NCTC 9380,
AF060699, Mnh.haemly | NCTC 9380, M75080, Mnh.haeml9
Mannheimia glucosida VP Angen et al. 1999 P925 | CCUG 38457, AF053889, Mnh.glu-
cos | CCUG 38457, AF053897, Mnh.gluco2, AF053889, Mnh.glucos
Mannheimia granulomatis VP (Ribeiro et al. 1990) Angen et al. 1999 <- Pasteurella
granulomatis (basonym) 26 | ATCC 49244, AF053902, Mnh.granul
Mannheimia ruminalis VP Angen et al. 1999 HPA92 | CCUG 38470, AF053900,
Mnh.rumina
Mannheimia varigena VP Angen et al. 1999 177, AF053893, Mnh.varign | CCUG
38462, AF053893, Mnh.varign
Genus VII. Phocoenobacter VP
Phocoenobacter uteri VP (T) Foster et al. 2000 M1063U/93, X89379 | NCTC 12872
Class IV. Deltaproteobacteria NP 279
Order I. DesulfurellalesNP (T)
Family I. DesulfurellaceaeNP
Genus I. Desulfurella VP (T)
Desulfurella acetivorans VP (T) Bonch-Osmolovskaya et al. 1993 A63 | ATCC 51451 |
DSM 5264, X72768, Dsr.acevor
Desulfurella kamchatkensis VP Miroshnichenko 1998 K-119, Y16941, Dsr.kamcha |
DSM 10409, Y16941, Dsr.kamcha
Desulfurella multipotens VP Miroshnichenko et al. 1996 RH-8 | DSM 8415, Y16943,
Dsr.multip
Desulfurella propionica VP Miroshnichenko 1998 U-8, Y16942, Dsr.propio | DSM
10410, Y16942, Dsr.propio
Genus II. Hippea VP
Hippea maritima VP (T) Miroshnichenko et al. 1999 MH2, Y18292 | DSM 10411
Order II. DesulfovibrionalesNP 280
Family I. DesulfovibrionaceaeNP
Genus I. Desulfovibrio AL (T)
Desulfovibrio desulfuricans subsp. desulfuricans AL (T) (Beijerinck 1895) Kluyver and
van Niel 1936 Essex 6, AF192153 | ATCC 29577, M34113, Dsv.desulf | DSM 642
| NCIB 8307 | VKM B-1799
Desulfovibrio desulfuricans subsp. aestuarii AL Postgate and Campbell 1966 NCIB

9335
Desulfovibrio acrylicus VP van der Maarel et al. 1997 W218, U32578, Dsv.acryli | DSM
10141
27 9
The current arrange men t o f t he Deltaprote obacteriaceae is bas ed on e xte ns iv e ch ange s in troduc ed into the o utline by Widde l and Ra ine y.
28 0
L udwig indicates th at De sulfovib riona les rep re se nts the dee pes t bran ch ing group in the Prot eoba cte ria.
127
Desulfovibrio aespoeensis VP Motamedi and Pedersen 1998 Aspo-2 | Aspo-2, X95230,

Dsv.aespoe | DSM 10631
Desulfovibrio africanus AL Campbell et al. 1966 ATCC 19996 | DSM 2603, X99236,
Dsv.afric2 | NCIB 8401 | VKM B-1757
Desulfovibrio alcoholovorans VP Qatibi et al. 1995 SPSN | ATCC 49738 | DSM 5433,
AF053751, Dsv.alvora | VKM B-1761
Desulfovibrio aminophilus VP Baena et al. 1999 ALA-3, AF067964, Dsv.amphil | DSM
12254
Desulfovibrio baarsii VP Widdel 1981 -> Desulfarculus baarsii 2st 14 | ATCC 33931 |
DSM 2075, M34403, Dsv.baarsi | VKM B-1802
Desulfovibrio baculatus VP Rozanova and Nazina 1984 -> Desulfomicrobium bacula-
tum DSM 4028 | INMI strain X, AJ277894, AF030438 | VKM B-1378
Desulfovibrio burkinensis VP Ouattara et al. 1999 HDv, AF053752, Dsv.burkbn | DSM
6830, AF053752, Dsv.burkbn
Desulfovibrio carbinolicus VP Nanninga and Gottschal 1995 EDK82 | DSM 3852 | VKM
B-1758
Desulfovibrio cuneatus VP Sass et al. 1998 STL1, X99501, Dsv.cuneat | DSM 11391
Desulfovibrio dechloracetivorans VP Sun et al. 2001 281 SF3, AF230530 | ATCC 700912
Desulfovibrio fructosovorans VP Ollivier et al. 1990 JJ | ATCC 4920 | DSM 3604,
AF050101, Dsv.frvora | VKM B-1801
Desulfovibrio furfuralis VP Folkerts et al. 1989 F1 | DSM 2599
Desulfovibrio gabonensis VP Tardy-Jacquenod et al. 1996 DSM 10636 | SEBR 2840,
U31080, Dsv.gabonn
Desulfovibrio giganteus VP Esnault et al. 1988 DSM 4123
Desulfovibrio gigas AL Le Gall 1963 ATCC 19364, M34400, Dsv.gigas | DSM 1382 |
NCIB 9332 | VKM B-1759
Desulfovibrio halophilus VP Caumette et al. 1991 ATCC 51179 | DSM 5663, X99237,
Dsv.halph2 | SL 8903, U48243, Dsv.halphl
Desulfovibrio hydrothermalis VP Alazard et al. 2003 AM13, AF458778 | CIP 107303 |
DSM 14728
Desulfovibrio indonesiensis VP Feio et al. 2000 Ind 1 | NCIMB 13468
Desulfovibrio inopinatus VP Reichenbecher and Schink 1999 HHQ 20, AF177276 |
DSM 10711
Desulfovibrio intestinalis VP Frhlich et al. 1999 KMS2, Y12254 | DSM 11275
Desulfovibrio litoralis VP Sass et al. 1998 STL6, X99504, Dsv.litora | DSM 11393
Desulfovibrio longreachensis VP Redburn and Patel 1995 AB16910a, Z24450 | ACM
3958
Desulfovibrio longus VP Magot et al. 1992 ATCC 51456 | DSM 6739 | SEBR 2582,
X63623, Dsv.longus
Desulfovibrio magneticus VP Sakaguchi et al. 2002 RS-1, D43944 | ATCC 700980 |
DSM 13731
Desulfovibrio mexicanus VP Hernandez-Eugenio et al. 2001 282 Lup1 | DSM 13116,
AF227984
Desulfovibrio oxyclinae VP Krekeler et al. 2000 P1B, U33316 | DSM 11498
Desulfovibrio pigra AL (T) (Moore et al. 1976) emend. Loubinoux et al. 2002 <- Desul-
fomonas pigra (basonym) ATCC 29098, M34404, AF192152, Dms.pigra | DSM
749 | VPI 11112 | VPI C3-23
Desulfovibrio profundus VP Bale et al. 1997 500-1 | DSM 11384, U90726, Dsv.profun
Desulfovibrio salexigens AL Postgate and Campbell 1966 ATCC 14822, M34401,
Dsv.salexi | DSM 2638 | NCIB 8403
28 1
28 2
128
Desulfovibrio sapovorans VP Widdel 1981 -> Desulfobotulus saprovorans 1pa3,

M34402, Dsv.sapovo | Lindhorst | ATCC 33892, M34402, Dsv.sapovo | DSM 2055 |
VKM B-1803
Desulfovibrio senezii VP Tsu et al. 1999 CVL, AF050100, Dsv.senezi | DSM 8436,
AF050100, Dsv.senezi
Desulfovibrio simplex VP Zellner et al. 1990 XVI | DSM 4141
Desulfovibrio sulfodismutans VP Bak and Pfennig 1988 ThAc01, Y17764 | ATCC 43913
| DSM 3696 | VKM B-1764
Desulfovibrio termitidis VP Trinkerl et al. 1991 HI 1, X87409, Dsv.termit | ATCC 49858

| DSM 5308 | VKM B-1765
Desulfovibrio thermophilus AL Rozanova and Khudyakova 1974 -> Thermodesulfobac-

terium mobile DSM 1276, AF334601 | VKM V-1128
Desulfovibrio vietnamensis VP Dang et al. 2002 283 G3 100, X93994
Desulfovibrio vulgaris subsp. vulgaris AL Postgate and Campbell 1966 ATCC 29579 |
DSM 644, M34399, Dsv.vulgar | NCIB 8303 | VKM B-1760
Desulfovibrio vulgaris subsp. oxamicus AL Postgate and Campbell 1966 ATCC 33405 |
DSM 1925, AJ295677 | Monticello 2 | NCIB 9442 | VKM B-1766
Desulfovibrio zosterae VP Nielsen et al. 1999 lac, Y18049, Dsv.zoster | DSM 11974
Genus II. Bilophila VP
Bilophila wadsworthia VP (T) Baron et al. 1990 WAL 7959 | ATCC 49260
Genus III. Lawsonia VP
Lawsonia intracellularis VP (T) McOrist et al. 1995 1482/89 | NCTC 12656, U30147,
Lw.intcell
Family II. "Desulfomicrobiaceae"
Genus I. Desulfomicrobium VP (T)
Desulfomicrobium baculatum VP (T) (Rozanova and Nazina 1984) Rozanova et al. 1994
<- Desulfovibrio baculatus (basonym) DSM 4028, AF030438, Dmb.bacul2 |
INMI strain X, AF030438, Dmb.bacul2 | VKM B-1378, AF030438, Dmb.bacul2
Desulfomicrobium apsheronum VP Rozanova et al. 1994 1105 | DSM 5918, U64865,
Dmb.apsher | VKM B-1804
Desulfomicrobium escambiense VP Sharak Genthner et al. 1996 ESC 1, U02469,
Dmb.escamb | ATCC 51164 | DSM 10707
Desulfomicrobium macestii VP (Gogotova and Vainstein 1989) Hippe et al. 2003 <-
Desulfobacterium macestii (basonym) M-9 | DSM 4194, AJ237604 | VKM B-1598
Desulfomicrobium norvegicum VP Sharak Genthner et al. 1997 Norway 4 | DSM 1741,
AJ277897 | NCIMB 8310
Desulfomicrobium orale VP Langendijk et al. 2001 284 NY678 | DSM 12838, AJ251623
Family III. DesulfohalobiaceaeNP
Genus I. Desulfohalobium VP (T)
Desulfohalobium retbaense VP (T) Ollivier et al. 1991 HR100, X99235, Dhb.retba2 |
DSM 5692, U48244, Dhb.retbae
Genus II. Desulfomonas AL 285
Desulfomonas pigra AL (T) Moore et al. 1976 -> Desulfovibrio pigra ATCC 29098,
M34404, Dms.pigra | DSM 749 | VPI 11112 | VPI C3-23
Genus III. Desulfonatronovibrio VP
Desulfonatronovibrio hydrogenovorans VP (T) Zhilina et al. 1997 Z-7935, X99234,
Dsn.hyvora | DSM 9292, X99234, Dsn.hyvora
Genus IV. Desulfothermus NP
Desulfothermus napthae NP Kuever et al, 2004 TD3 | DSM 13418, X80922
28 3
28 4
28 5
Loub ino ux e t a l. 200 2 have proposed th e tra nsfer o f D esu lfo mona s pigra to Des ulf ovibrio p igra. Ru le 37 a(1) s tate s that th e name o f a
taxon mu st be chang ed if the nom encla tural type of the tax on is e xc lu ded.
129
Family IV. DesulfonatronumaceaeNP

Genus I. Desulfonatronum VP (T) 286
Desulfonatronum lacustre VP (T) Pikuta et al. 1998 Z-7951, Y14594 | DSM 10312
Order III. DesulfobacteralesNP
Family I. DesulfobacteraceaeNP
Genus I. Desulfobacter VP (T)
Desulfobacter postgatei VP (T) Widdel 1981 2ac9 | Dangast | DSM 2034, AF418180 | VKM
B-1643
Desulfobacter curvatus VP Widdel 1988 AcRM3 | ATCC 43919 | DSM 3379, M34413,
Dsb.curvat
Desulfobacter giganteus VP Esnault et al. 1988 8601 | DSM 4123
Desulfobacter halotolerans VP Brandt and Ingvorsen 1998 GSL-Ac1, Y14745 | DSM
11383
Desulfobacter hydrogenophilus VP Widdel 1988 AcRS1 | ATCC 43915 | DSM 3380,
M34412, Dsb.hyphil
Desulfobacter latus VP Widdel 1988 AcRS2 | ATCC 43918 | DSM 3381, M34414,
Dsb.latus
Desulfobacter vibrioformis VP Lien and Beeder 1997 B54, U12254, Dsb.vibrio | DSMZ
8776
Genus II. Desulfatibacillum VP
Desulfatibacillum aliphaticivorans VP (T) Cravo-Laureau et al. 2004 CV2803,
AY184360 | ATCC BAA-743 | DSM 15576
Genus III. Desulfobacterium VP
Desulfobacterium indolicum VP (T) Bak and Widdel 1988 In04 | ATCC 43938 | DSM 3383,
AJ237607
Desulfobacterium anilini VP Schnell et al. 1990 Ani | DSM 4660, AJ237601
Desulfobacterium autotrophicum VP Brysch et al. 1988 HRM2 | ATCC 43914 | DSM
3382, M34409, Dbm.autcum
Desulfobacterium catecholicum VP Szewzyk and Pfennig 1988 Nelson | NZ | NZva20 |
DSM 3882, AJ237602
Desulfobacterium cetonicum VP Galushko and Rozanova 1994 -> Desulfosarcina ce-
tonium 480 | DSM 7267, AJ237603 | VKM B-1975
Desulfobacterium macestii VP Gogotova and Vainstein 1989 -> Desulfomicrobium
macestii M-9 | DSM 4194, AJ237604 | VKM B-1598
Desulfobacterium niacini NP Kuever et al. 2004 = Desulfococcus niacini NAV-1 |
DSM 2650, M34406
Desulfobacterium phenolicum VP Bak and Widdel 1988 -> Desulfobacula phenolica
Ph01 | ATCC 43956 | DSM 3384, AJ237606
Desulfobacterium vacuolatum NP Kuever et al., 2004 1bRM | DSM 3385, M34408
Genus IV. Desulfobacula VP
Desulfobacula toluolica VP (T) Rabus et al. 2000 Tol2 | DSM 7467, X70953
Desulfobacula phenolica (Bak and Widdel 1988) Kuever et al. 2001 287 <- Desulfobac-
terium phenolicum (basonym) Ph 01 | ATCC 43956 | DSM 3384, AJ237606
Genus V. Desulfobotulus NP
Desulfobotulus saprovorans(T) (Widdel 1981, 382) Keuver et al. 2004 comb. nov. <-
Desulfovibrio sapovorans (basonym) 1pa3 | Lindohorst | ATCC 33892 | DSM 2055,
M34402
Genus VI. Desulfocella VP
Desulfocella halophila VP (T) Brandt et al. 1999 GSL-But2, AF022936 | ATCC 700426
| DSM 11763
Genus VII. Desulfococcus VP
28 6
Kue ver et a l. treat Desulfonat ro num as a mem ber o f the Des ulfov ib riona les in t he S y ste matics .
28 7
130
Desulfococcus multivorans VP (T) Widdel 1981 1be1 | Gttingen | ATCC 33890, M34405,
Dcc.multiv | DSM 2059
Desulfococcus biacutus VP Platen et al. 1991 KMRActs | DSM 5651, AJ277887
Genus VIII. Desulfofaba VP
Desulfofaba gelida VP (T) Knoblauch et al. 1999 emend. Abildgaard et al. 2004 PSv29,
AF099063 | DSM 12344
Desulfofaba fastidiosa VP Abildgaard et al. 2004 P2 | ATTC BAA-815, AY268891 |
DSM 15249
Desulfofaba hansenii VP <- Desulfomusa hansenii (basonym) P2 | DSM 15249,
AY268891 | ATCC BAA-815, AY268891
Genus IX. Desulfofrigus VP
Desulfofrigus oceanense VP (T) Knoblauch et al. 1999 ASv26, AF099064 | DSM 1234
Desulfofrigus fragile VP Knoblauch et al. 1999 LSv21, AF099065 | DSM 12345
Genus X. Desulfomusa VP
Desulfomusa hansenii VP (T) Finster et al. 2001 -> Desulfofaba hansenii P1, AF321820
| ATCC 700811 | DSM 12642 288
Genus XI. Desulfonema VP

Desulfonema limicola VP (T) Widdel 1981 5ac10 | Jadebusen | ATCC 33961 | DSM 2076,
U45990, Dsf.limico
Desulfonema ishimotonii VP Fukui et al. 2000 Tokyo 01, U45992 | DSM 9680
Desulfonema magnum VP Widdel 1981 4be13 | Montpellier | ATCC 35288 | DSM 2077,
U45989, Dsf.magnum
Genus XII. Desulforegula VP
Desulforegula conservatrix VP (T) Rees and Patel 2001 Mb1Pa, AF243334 | ATCC BAA-
134 | DSM 13527
Genus XIII. Desulfosarcina VP
Desulfosarcina variabilis VP (T) Widdel 1981 3be13 | Montpellier | DSM 2060, M26632,
Dss.variab | DSM 2060, M34407, Dss.varia2 | VKM B-1627
Desulfosarcina cetonium NP Kuever et al. 2004 <- Desulfobacterium cetonium (ba-
sonym) 480 | DSM 7267, AJ237603 | VKM B-1975
Desulfosarcina ovata NP Kuever et al., 2004 oXyS1, Y17286 | DSM 13228
Genus XIV. Desulfospira VP
Desulfospira joergensenii VP (T) Finster et al. 1997 B331 | DSM 10085, X99637, Dsp.jo-
erge
Genus XV. Desulfotignum VP
Desulfotignum balticum VP (T) Kuever et al. 2001 289 Sax, AF233370 | DSM 7044
Desulfotignum phosphitoxidans VP Schink et al. 2002 FiPS-3, AF420288 | DSM 13687
| OCM 818
Family II. DesulfobulbaceaeNP

Genus I. Desulfobulbus VP (T)
Desulfobulbus propionicus VP (T) Widdel 1981 1pr3 | Lindhorst | ATCC 33891, M34410,
Dbb.propio | DSM 2032
Desulfobulbus elongatus VP Samain et al. 1985 FP, X95180, Dbb.elonga | ATCC 43118
| DSM 2908, X95180, Dbb.elonga
Desulfobulbus mediterraneus VP Sass et al. 2002 290 86FS1, AF354663 | DSM 13871
Desulfobulbus rhabdoformis VP Lien et al. 1998 M16, U12253, Dbb.rhabdo | DSM 8777
Genus II. Desulfocapsa VP
Desulfocapsa thiozymogenes VP (T) Janssen et al. 1997 Bra2, X95181, Dsc.thiozy | DSM
7269
Desulfocapsa sulfexigens VP Finster et al. 2000 SB164P1, Y13672 | DSM 10523
Genus III. Desulfofustis VP
28 8
28 9
29 0
131
Desulfofustis glycolicus VP (T) Friedrich et al. 1996 PerGlyS, X99707, Dfs.glycol | DSM
9705
Genus IV. Desulforhopalus VP
Desulforhopalus vacuolatus VP (T) Isaksen and Teske 1999 1tk 10, L42613, Drp.vacuol
| DSM 9700
Desulforhopalus singaporensis VP Lie et al. 2000 S pore T1, AF118453 | DSM 12130
Genus V. Desulfotalea VP
Desulfotalea psychrophila VP (T) Knoblauch et al. 1999 LSv54, AF099062 | DSM 12343
Desulfotalea arctica VP Knoblauch et al. 1999 LSv514, AF099061 | DSM 12342
Family III. NitrospinaceaeNP 291
Genus I. Nitrospina AL (T)
Nitrospina gracilis AL (T) Watson and Waterbury 1971 , L35503, Nts.gracil, L35504,
Nts.graci2
Order IV. DesulfarcalesNP
Family I. DesulfarculaceaeNP
Genus I. DesulfarculusNP
Desulfarculus baarsii NP Kuever et al. 2004 <- Desulfovibrio baarsii (basonym) 2st
14 | ATCC 33931 | DSM 2075, M34403, Dsv.baarsi | VKM B-1802
Order V. DesulfuromonalesNP 292
Family I. DesulfuromonaceaeNP
Genus I. Desulfuromonas AL (T)
Desulfuromonas acetoxidans AL (T) Pfennig and Biebl 1977 DSM 684, M26634
Desulfuromonas acetexigens VP Finster et al. 1997 2873 | DSM 1397
Desulfuromonas chloroethenica VP Krumholz 1997 TT4B, U49748 | ATCC 700295 |
DSM 12431
Desulfuromonas palmitatis VP Coates et al. 2000 SDBY1, U28172 | ATCC 51701 | DSM
12391
Desulfuromonas thiophila VP Finster et al. 1997 NZ27, Y11560, Dsm.thioph | DSMZ
8987, Y11560, Dsm.thioph
Genus II. Desulfuromusa VP
Desulfuromusa kysingii VP (T) Liesack and Finster 1994 Kysw2, X79414, Dsu.kysngi |
DSM 7343, X79414, Dsu.kysngi
Desulfuromusa bakii VP Liesack and Finster 1994 Gyprop, X79412, Dsu.bakii | DSM
7345, X79412, Dsu.bakii
Desulfuromusa succinoxidans VP Liesack and Finster 1994 Gylac, X79415, Dsu.succin
| DSM 8270, X79415, Dsu.succin
Genus III. Malonomonas VP

Malonomonas rubra VP (T) Dehning and Schink 1990 Gra Mal 1, Y17712, Mln.rubra1 |
DSM 5091
Genus IV. Pelobacter VP
Pelobacter acidigallici VP (T) Schink and Pfennig 1983 Ma Gal 2, X77216, Peb.acidgl |
ATCC 49970 | DSM 2377, X77216, Peb.acidgl
Pelobacter acetylenicus VP Schink 1986 WoAcy 1, X70955, Peb.aceten | DSM 3246,
X70955, Peb.aceten 293
Pelobacter carbinolicus VP Schink 1984 Gra Bd 1, X79413, Peb.carbin | DSM 2380,
X79413, Peb.carbin 294
Pelobacter massiliensis VP Schnell et al. 1991 HHQ7 | ATCC 49973 | DSM 6233 295
29 1
In the ?rst version of the ta xon omic ou tline, this fa mily ap peared u nder the nam e Des ulf oarcu lac ea e a nd in cluded th e genu s Des ulfoarc ula
. However, as of A pril 20 01, that genu s h as not been validly o r effec tiv ely publis he d. Th e grou p ha s b een re tain ed in t he o utline as a fa mily
an d is rena med Nitrospin ace ae based on p riority.
29 2
Th ere are currently co mpet ing views ab out th e na ture of this o rd er. Noting th at P elo bac ter is p araphy letic , L onerga n et al. hav e g ro uped
all mem bers of th e Desulfuromo dales into a single fam ily: G eoba cte ra cea e. K uev er e t al. g ro up th es e ge nera into two s ep arate families
ba sed upo n bo th p hysiolo gical and phylogen etic a nalyses and reco mme nd t hat a berrant Peloba cte r spe cies s hould b e rec las s i?ed into one
or m ore new gene ra . Neither viewpo int is current ly re?ected in a formal p ro pos al.
29 3
By 16 S rDNA sequ ence a nalysis, this spe cies grou ps wit h s pec ie s of the Des ulfu ro mon as.
29 4
29 5
132
Pelobacter propionicus VP Schink 1984 Ott Bd 1, X70954, Peb.propio | DSM 2379,

X70954, Peb.propio 296
Pelobacter venetianus VP Schink and Stieb 1984 Gra PEG 1 | DSM 2394, U41562,
Peb.veneti 297
Family II. GeobacteraceaeNP 298
Genus I. Geobacter VP (T)
Geobacter metallireducens VP (T) Lovley et al. 1995 GS-15, L07834, Gbc.metred | ATCC
53774 | DSM 7210
Geobacter bremensis VP Straub and Buchholz-Cleven 2001 Dfr1, U96917 | DSM 12179
| OCM 796
Geobacter chapellei VP Coates et al. 2001 172, U41561 | ATCC 51744 | DSM 13688
Geobacter grbiciae VP Coates et al. 2001 TACP-2, AF335182 | ATCC BAA-45 | DSM
13689
Geobacter hydrogenophilus VP Coates et al. 2001 H2, U28173 | ATCC 51590 | DSM
13691
Geobacter pelophilus VP Straub and Buchholz-Cleven 2001 Dfr2, U96918 | DSM 12255
| OCM 797
Geobacter sulfurreducens VP Caccavo et al. 1995 PCA, U13928, Gb, \c.slfred | ATCC
51573 | DSM 12127
Genus II. Trichlorobacter VP
Trichlorobacter thiogenes VP (T) De Wever et al. 2001 299 K1 | ATCC BAA-34, AF223382
Order VI. SyntrophobacteralesNP
Family I. SyntrophobacteraceaeNP
Genus I. Syntrophobacter VP (T)
Syntrophobacter wolinii VP (T) Boone and Bryant 1984 DBT | Desulfovibrio sp. G-11 |
DSM 2805, X70905, Snp.wolini
Syntrophobacter fumaroxidans VP Harmsen et al. 1998 MPOB, X82874, Snp.fumrox |
DSM 10017
Syntrophobacter pfennigii VP Wallrabenstein et al. 1996 KoProp1, X82875, Snp.pfnngi
| DSM 10092
Genus II. Desulfacinum VP

Desulfacinum infernum VP (T) Rees et al. 1995 BaG1, L27426 | ACM 3991
Desulfacinum hydrothermale VP Sievert and Kuever 2000 MT-96 | DSM 13146,
AF170417
Genus III. Desulforhabdus VP
Desulforhabdus amnigena VP (T) Oude Elferink et al. 1997 ASRB1, X83274, Drh.am-
nign | ATCC 51979 | DSM 10338
Genus IV. Desulfovirga VP
Desulfovirga adipica VP (T) Tanaka et al. 2000 TsuAS1, AJ237605 | DSM 12016
Genus V. Thermodesulforhabdus VP
Thermodesulforhabdus norvegica VP (T) Beeder et al. 1996 A8444, U25627, Tdr.norveg
| DSM 9990
Family II. SyntrophaceaeNP

Genus I. Syntrophus VP (T)
Syntrophus buswellii VP (T) Mountfort et al. 1984 DM-2 | DSM 2612, X85131,
Syt.buswel | DSM 2612A | DSM 2612B
Syntrophus aciditrophicus VP Jackson et al. 2001 300 SB, U86447 | ATCC 700169
Syntrophus gentianae VP Wallrabenstein et al. 1996 HQG1, X85132, Syt.gentia | DSM
8423
29 6
By 16 S rDNA sequ ence a nalysis, this spe cies grou ps wit h m embe rs o f th e G eob ac terac eae.
29 7
29 8
L udwig indica tes that the p hyloge netic depth of th e G eob ac teriac ea e is eq uiv alent to tha t of t he De su lfurob ac teriales and My xo co cc ales.
29 9
30 0
133
Genus II. Desulfobacca VP

Desulfobacca acetoxidans VP (T) Oude Elferink et al. 1999 ASRB2, AF002671,
Dfb.acetox | DSM 11109
Genus III. Desulfomonile VP
Desulfomonile tiedjei VP (T) DeWeerd et al. 1991 DCB-1 | ATCC 49306, M26635,
Dmn.tiedje | DSM 6799
Desulfomonile limimaris VP Sun et al. 2001 301 DCB-M, AF230531 | ATCC 700979
Genus IV. Smithella VP
Smithella propionica VP (T) Liu et al. 1999 LYP, AF126282 | OCM 661
Order VII. BdellovibrionalesNP
Family I. BdellovibrionaceaeNP
Genus I. Bdellovibrio AL (T)
Bdellovibrio bacteriovorus AL (T) Stolp and Starr 1963 HD 100, AJ292759 | ICPB 3268
| NCIB 9529 | DSM 50701
Bdellovibrio starrii AL Seidler et al. 1972 -> Bacteriovorax starrii A3.12, AF084852
| ATCC 15145
Bdellovibrio stolpii AL Seidler et al. 1972 -> Bacteriovorax stolpii UKi2, M34125,
Bde.stolpi | ATCC 27052 | DSM 50722 | ICPB 3291
Genus II. Bacteriovorax VP
Bacteriovorax stolpii VP (T) Baer et al. 2000 <- Bdellovibrio stolpii (basonym) UKi2,
M34125 | ATCC 27052 | DSM 50722 | ICPB 3291
Bacteriovorax starrii VP Baer et al. 2000 <- Bdellovibrio starrii (basonym) A3.12,
AF084852 | ATCC 15145
Genus III. Micavibrio VP
Micavibrio admirandus VP (T) Lambina et al. 1989 ARL-14 | VKM B-1619
Genus IV. Vampirovibrio VP
Vampirovibrio chlorellavorus VP (T) Gromov and Mamkayeva 1980 ATCC 29753 | ICPB
3707 | NCIB 11383
Order VIII. Myxococcales AL
Suborder I. CystobacterineaeNP
Family I. Cystobacteraceae AL
Genus I. Cystobacter AL (T)
Cystobacter fuscus AL (T) Schroeter 1886 M29 | ATCC 25194, M94276, Cys.fuscus
| DSM 2262
Cystobacter armeniaca NP Reichenbach 2002 Cb a1 | DSM 14710

Cystobacter badius NP Reichenbach 2002 Cb b2 | DSM 17723
Cystobacter disciformis (Thaxter 1904) Reichenbach 2004 <- Angiococcus dis-
ciformis (basonym) ATCC 33172, M94374
Cystobacter ferrugineus AL (Krzemieniewska and Krzemieniewski 1927) Mc-
Curdy 1970 Windsor M-203 | Cb fe18, AJ233901 | DSM 14716
Cystobacter gracilis NP Reichenbach 2002 Cb g1 | DSM 14753
Cystobacter miniatus NP Reichenbach 2002 Cb a24 | DSM 14712
Cystobacter minor (Krzemieniewska and Krzemieniewski 1926) McCurdy 1970
= Cystobacter minor nom. corr. (senior heterotypic synonym) Windsor
M-307 | Cb m2, AJ233903 | DSM 14751
Cystobacter velatus NP Reichenbach 2002 Cb v34 | DSM 14718
Cystobacter violaceus (ex Khlwein and Gallwitz, 1958; Khlwein and Reichen-
bach 1962) Reichenbach 2002 nom. rev. <- Archangium violaceum (ba-
sonym) Cb vi61 | DSM 14727
Genus II. Anaeromyxobacter VP
30 1
134
Anaeromyxobacter dehalogenans VP (T) Sanford et al. 2002 302 2CP-1, AF382396

| ATCC BAA-258
Genus III. Archangium AL

Archangium gephyra AL (T) Jahn 1924 M18 | ATCC 25201, M94273, Arc.gephyr
| DSM 2261
Genus IV. Hyalangium NP

Hyalangium minutum NP (T) Reichenbach 2002 NOCB-2 | DSM 14724
Genus V. Melittangium AL
Melittangium boletus AL (T) Jahn 1924 Me b8, AJ233908 | DSM 14713
Melittangium alboracemum nom corr. AL (McCurdy 1971) Reichenbach 2002 <-
Melittangium alboraceum (basonym) UMH Slides Peterson 72
Melittangium lichenicola AL (Thaxter 1892) McCurdy 1971 M201 | ATCC 25946,
M94277, Mel.lichen | DSM 14877 303
Genus VI. Stigmatella AL
Stigmatella aurantiaca AL (T) Berkeley and Curtis 1875 ATCC 25190, M94281,
Sma.aurant
Stigmatella erecta AL (Schroeter 1886) McCurdy 1971 ATCC 25191
Stigmatella hybrida NP Reichenbach 2002 Sg h20 | DSM 14722
Family II. Myxococcaceae AL
Genus I. Myxococcus AL (T)
Myxococcus fulvus AL (T) (Cohn 1875) Jahn 1911 ATCC 25199
Myxococcus coralloides AL Thaxter 1892 -> Corallococcus coralloides M2 |
ATCC 25202, M94278, Myx.corall | DSM 2259
Myxococcus disciformis AL Thaxter 1904 -> Angiococcus disciformis ATCC
33172, M94374, Ang.discif | CMU-1
Myxococcus ?avescens VP Yamanaka et al. 1990 = Myxococcus virescens 304 (het-
erotypic synonym) 38 | ATCC 51243 | DSM 4946 | IAM 13189 | JCM 6245
Myxococcus macrosporus AL (Krzemieniewska and Krzemieniewski 1926)
Zahler and McCurdy 1974 Windsor M271 305
Myxococcus stipitatus AL Thaxter 1897 Windsor M78
Myxococcus virescens AL Thaxter 1892 M22 | ATCC 25203 | DSM 2260
Myxococcus xanthus AL Beebe 1941 FB | ATCC 25232 | NBRC 13542 | NCIB 9412
Genus II. Corallococcus NP
Corallococcus coralloides NP (T) (Thaxter 1892) Reichenbach 2002 <- Myxococ-
cus coralloides (basonym) M2 | ATCC 25202, M94278, Myx.corall | DSM
2259
Corallococcus exiguus NP Reichenbach 2002 Cc e167 | DSM 14696
Corallococcus macrosporus NP (ex Krzemieniewska and Krzemieniewski, 1926)
Reichenbach 2002 <- Chondrococcus macrosporus (basonym) Cc m8 |
DSM 14697
Genus III. Pyxicoccus NP
Pyxicoccus fallax NP (T) Reichenbach 2002 Py ? | DSM 14698
Suborder II. SorangineaeNP
Family I. Polyangiaceae AL
Genus I. Polyangium AL (T)
Polyangium vitellinum AL (T) Link 1809 TC 4564
Polyangium aureum VP (ex Krzemieniewska and Krzemieniewski) Brockman
1989 No viable type strain.
30 2
30 3
Th e ATCC design ation o f th e type stra in app earin g in the App ro ved List s is inc orrrec t.
30 4
Reich enba ch sugg est s tha t M yxococcu s ?ave scens is a strain of My x oco cc us vire sc ens , ho wev er, doe s no t f ormally emen d the ge nus
de scription.
30 5
Reich enba ch indica tes tha t th is species is probab ly n ot a m yx oba cte ria and ma y be a fung us. N o v iable m aterial av ailable for f urther s tud y.
135
Polyangium cellulosum VP (ex Imshenetski and Solntseva 1936) Brockman 1989

-> Sorangium cellulosum No viable type strain.
Polyangium fumosum AL Krzemieniewska and Krzemieniewski 1930 Windsor
M257 | Pl fu5 | DSM 14668
Polyangium luteum VP (ex Krzemieniewska and Krzemieniewski 1927) Brockman
1989 No viable type strain.
Polyangium minor AL (Peterson 1959) Reichenbach 2002 306 -> Haploangium
minus UMH Peterson 44
Polyangium parasiticum VP ex Geitler 1924) Brockman 1989 No viable type
strain.
Polyangium rugiseptum AL (Peterson 1959) McCurdy 1970 307 -> Haploangium
rugiseptum UMH Peterson 51
Polyangium sorediatum VP (ex Thaxter 1904) Brockman 1989 | Pl s12 | DSM
14670
Polyangium spumosum VP (ex Krzemieniewska and Krzemieniewski) Brockman
1989 Pl sm5 | DSM 14734
Genus II. Byssophaga NP
Byssophaga cruenta NP (T) Reichenbach 2002 308 <- Chondrococcus cruentus (ba-
sonym) By c2 | DSM 14553
Genus III. Chondromyces AL
Chondromyces crocatus AL (T) Berkeley and Curtis 1874 TC 601 | Cm c5 | DSM
14714
Chondromyces apiculatus AL Thaxter 1897 TC 4481 | Cm a14 , AJ233938 | DSM
14605
Chondromyces catenulatus AL Thaxter 1904 TC 4517
Chondromyces lanuginosus AL Ko? er 1913 TC 4494 | Sy t2, AJ233939 | DSM
14631
Chondromyces pediculatus AL Thaxter 1904 TC 4524 | Cm p51TC , | DSM 14607
Chondromyces robustus NP Reichenbach 2002 Cm a13, AJ233942 | DSM 14608
Genus IV. "Haploangium"
Haploangium rugiseptum NP (T) (Peterson, 1959) Reichenbach 2004 <-
Polyangium rugiseptum (basonym) UMH Peterson 51
Haploangium minus NP (T) (Peterson, 1959) Reichenbach 2004 <- Polyangium
minor (basonym) UMH Peterson 41
Genus V. Jahnia NP
Jahnia thaxteri NP (T) Reichenbach Pl t4 | DSM 14626
Genus VI. Sorangium NP 309
Sorangium cellulosum NP (T) Reichenbach 2002 <- Polyangium cellulosum (ba-
sonym) ce1871 | DSM 14627
Suborder III. Nannocystineae NP
Family I. Nannocystaceae NP
Genus I. Nannocystis VP (T)
Nannocystis excedens subsp. excedans AL (T) Reichenbach 1970 Na e1, AJ233946
| ATCC 25963, M94279, Nan.exeden | DSM 71
Nannocystis excedens subsp. aggregans Reichenbach 2004 Na a1 | DSM 14639

Nannocystis excedens subsp. cinnabarina Reichenbach 2004 Na c1 | DSM 14641
Nannocystis excedens subsp. glomerata Reichenbach 2004 Na g1 | DSM 14640
30 6
I t is u nclea r as to w heth er or no t the Cod e of Prokaryotic N omen clature su pports th e form atio n o f a new c om bin ation f or an unc ult iv ated
specie s, even thou gh the basonym app eared on the Ap prove d L is ts of Nam es .
30 7
I t is u nclea r as to w heth er or no t the Cod e of Prokaryotic N omen clature su pports th e form atio n o f a new c om bin ation f or an unc ult iv ated
specie s, even thou gh the basonym app eared on the Ap prove d L is ts of Nam es .
30 8
Reichenb ach re fers to th is a new combinat ion . Howe ver, Neit her Chond ro co cc us n or My xoc oc c us c ruentu s ap pear on th e App ro ved Lis ts
of B act erial N ames or subseq uent Valida tion L ists.
30 9
Re ichenb ach ha s name d th e subo rd er afte r Soran giu m, which is no t y et p ublis hed and has n eit her s tand ing nor p riorit y. The us e o f
S orangium as the ro ot n ame is qu estion able. Polya ngium has prio rity an d is t he ty pe of t he fa mily. It wou ld hav e b een more logic al to h ave
P olyang ium serve as th e type genu s for the S uborde r as well. A t pres ent, this propo sal v io lat es Rule 21 a.
136
Nannocystis excedens subsp. pulla Reichenbach 2004 Na a145 | DSM 14629

Nannocystis pusilla NP Reichenbach 2004 Na p29 | DSM 14622
Genus II. Plesiocystis VP
Plesiocystis paci?ca VP (T) Iizuka et al. 2003 SIR-1, AB083432 | AJ 13960 | DSM
14875 | JCM 11591
Family II. HaliangiaceaeNP
Genus I. Haliangium VP (T)
Haliangium ochraceum VP (T) Fudou et al. 2002 SMP-2, AB016470 | AJ 13395 |
DSM 14365 | JCM 11303
Haliangium tepidum VP Fudou et al. 2002 SMP-10 | AJ 13914 | DSM 14436 | JCM
11304, AB062751
Family III. Ko?eriaceae NP
Genus I. Ko?eria NP (T)
Ko?eria ?ava (ex Ko?er 1913) Reichenbach 2002 nom. rev. Pl vt1 | DSM 14601
Class V. EpsilonproteobacteriaNP
Order I. CampylobacteralesNP (T)
Family I. Campylobacteraceae VP
Genus I. Campylobacter AL (T)
Campylobacter fetus fetus AL (T) (Smith and Taylor 1919) Sebald and Veron 1963 ATCC
27324, L04314, Cam.fetus4 | ATCC 27324, M65012, Cam.fetus2 | CCUG 6823 | CIP
5396 | DSM 5361 | LMG 6442 | NCTC 10842
Campylobacter butzleri VP Kiehlbauch et al. 1991 -> Arcobacter butzleri ATCC 49616
| D2686 | DSM 8739 | LMG 10828
Campylobacter cinaedi VP Totten et al. 1988 -> Helicobacter cinaedi 165 | ATCC
35683 | CCUG 18818, M88150, Hlb.cinaed | DSM 5359 | LMG 7543
Campylobacter coli AL (Doyle 1948) Veron and Chatelain 1973 = Campylobacter hyoilei
(junior heterotypic synonym) serovar 4 | ATCC 33559, M59073, Cam.coli | CCUG
11283, L04312, Cam.coli83 | CIP 7080 | DSM 4689 | LMG 6440 | LMG 8847 | NCTC
11366
Campylobacter concisus VP Tanner et al. 1981 ATCC 33237, L04322, Cam.concis
| CCUG 13144 | DSM 5360 | FDC 484, L04322, Cam.concis | LMG 7788 | NCTC
11485
Campylobacter cryaerophilus VP Neill et al. 1985 -> Arcobacter cryaerophilus 2766 |
A 169/B | ATCC 43158 | CCUG 17801, L14624, Aob.cryaer | DSM 7289 | LMG 7536
| NCTC 11885
Campylobacter curvus VP (Tanner et al. 1984) Vandamme et al. 1991 <- Wolinella curva
(basonym) ATCC 35224, L04313, Cam.curvus | CCUG 13146 | DSM 6644 | LMG
7609 | NCTC 11649 | VPI 9584
Campylobacter fennelliae VP Totten et al. 1988 -> Helicobacter fennelliae 231 | ATCC
35684 | CCUG 18820, M88154, Hlb.fennel | DSM 7491 | LMG 7546 | NCTC 11612
Campylobacter fetus venerealis AL (Florent 1959) Veron and Chatelain 1973 ATCC
19483, L14633, Cam.fetus | ATCC 19483, M65011, Cam.fetus1
Campylobacter gracilis VP (Tanner et al. 1981) Vandamme et al. 1995 <- Bacteroides
gracilis (basonym) ATCC 33236, L04320, Cam.gracil | CCUG 27720 | FDC 1084
| NCTC 12738
Campylobacter helveticus VP Stanley et al. 1993 ATCC 51209 | CCUG 30682 | NCTC
12470, U03022, Cam.helvet
Campylobacter hominis VP Lawson et al. 2001 CH001A, AJ251584 | LMG 19568 |
NCTC 13146
Campylobacter hyoilei VP Alderton et al. 1995 = Campylobacter coli (senior het-
erotypic synonym) CCUG 33450 | RMIT 32A, L19738, Cam.coli4
Campylobacter hyointestinalis subsp. hyointestinalis VP Gebhardt et al. 1985 emend.
On et al. 1995 80-4577-4 | ATCC 35217, M65010, Cam.hyoin2 | CCUG 14169 |
LMG 7817 | NCTC 11608, AF097689
137
Campylobacter hyointestinalis subsp. lawsonii VP On et al. 1995 CCUG 34538 | CHY

5, AF097685 | LMG 14432 | NCTC 12901
Campylobacter jejuni subsp. jejuni AL (Jones et al. 1931) Veron and Chatelain 1973
Biovar 1 | Penner serovar 23 | ATCC 33560, M59298, Cam.jejuni | CCUG 11284,
L04315, Cam.jejun4 | CIP 702 | DSM 4688 | LMG 6444 | LMG 8841 | NCTC 11351
Campylobacter jejuni subsp. doylei VP Steele and Owen 1988 93 | CCUG 24567,
L14630, Cam.jejun2 | IMVS 1141 | LMG 8843 | NCTC 11951
Campylobacter lanienae VP Logan et al. 2000 NCTC 13004, AF043425
Campylobacter lari VP Benjamin et al. 1984 ATCC 35221 | CCUG 10773, L04316,
Cam.lari | CCUG 23947 | DSM 11375 | LMG 8846 | NCTC 11352 | WRI 3034/77
Campylobacter mucosalis VP (Lawson et al. 1981) Roop et al. 1985 <- Campylobacter
sputorum subsp. mucosalis (basonym) FS253/72 | ATCC 43264 | CCUG 6822,
L06978, Cam.mucosa | LMG 6448 | NCTC 11000
Campylobacter mustelae VP (Fox et al. 1988) Fox et al. 1989 <- Campylobacter pylori
subsp. mustelae (basonym) -> Helicobacter mustelae R85-13-6 | ATCC 43772,
M35048, Hlb.mustel
Campylobacter nitro?gilis VP McClung et al. 1983 -> Arcobacter nitro?gilis CI | ATCC
33309 | CCUG 15893, L14627, Aob.n?gil | DSM 7299 | LMG 7604 | NCTC 12251
Campylobacter pylori subsp. pylori VP (Marshall et al. 1985) Marshall and Goodwin
1987 emend. Fox et al. 1988 -> Helicobacter pylori ATCC 43504, M88157,
Hlb.pylori | ATCC 43504, U01330, Hlb.pylor6 | CCUG 17874 | DSM 4867 | LMG
7539 | NCTC 11637, Z25741, Hlb.pylor2 | Royal Perth Hospital 13487
Campylobacter pylori subsp. mustelae VP Fox et al. 1988 -> Campylobacter mustelae
R85-13-6 | ATCC 43772, M35048, Hlb.mustel
Campylobacter rectus VP (Tanner et al. 1981) Vandamme et al. 1991 <- Wolinella recta
(basonym) ATCC 33238, L04317, Cam.rectu2 | CCUG 20446 | DSM 3260 | FDC
371 | NCTC 11489
Campylobacter showae VP Etoh et al. 1993 SU A4 | ATCC 51146 | CCUG 30254,
L06974, Cam.show54
Campylobacter sputorum subsp. sputorum AL (Prvot 1940) Vron and Chatelain 1973
emend. On et al. 1998 Forsyth ER33 | ATCC 35980 | CCUG 9728 | CIP 103749 |
DSM 10535 | LMG 7795, X67775, Cam.sputo3 | NCTC 11528 | VPI S-17
Campylobacter sputorum subsp. bubulus AL (Florent 1953) Vron and Chatelain 1973
CCUG 11289 | CIP 53103 | DSM 5363 | LMG 6447 | NCTC 11367
Campylobacter sputorum subsp. mucosalis VP (ex Lawson and Rowland 1974) Lawson
et al. 1981 -> Campylobacter mucosalis NCTC 11000
Campylobacter upsaliensis VP Sandstedt and Ursing 1991 C231 | ATCC 43954 | CCUG
14913, L14628, Cam.upsali | DSM 5365 | LMG 8850 | NCTC 11541
Genus II. Arcobacter VP
Arcobacter nitro?gilis VP (T) (McClung et al. 1983) Vandamme et al. 1991 <-
Campylobacter nitro?gilis (basonym) CI | ATCC 33309 | CCUG 15893, L14627,
Aob.n?gil | DSM 7299 | LMG 7604 | NCTC 12251
Arcobacter butzleri VP (Kiehlbauch et al. 1991) Vandamme et al. 1992 <- Campylobac-
ter butzleri (basonym) ATCC 49616 | CCUG 30485 | CDC D2686 | DSM 8739 |
LMG 10828
Arcobacter cryaerophilus VP (Neill et al. 1985) Vandamme et al. 1991 <- Campy-
lobacter cryaerophilus (basonym) 2766 | A 169/B | Neill A 169/B | CCUG 17801,
L14624, Aob.cryaer | DSM 7289 | LMG 7536 | NCTC 11885
Arcobacter skirrowii VP Vandamme et al. 1992 449/80 | Skirrow 449/80 | CCUG 10374,
L14625, Aob.skirro | DSM 7302 | LMG 6621
Genus III. "Dehalospirillum"
Dehalospirillum multivorans AL (T) Scholz-Muramatsu et al. 2002 -> Sulfurospirillum
multivorans K, X82931 | DSM 12446 310
31 0
138
Genus IV. Sulfurospirillum VP

Sulfurospirillum deleyianum VP (T) Schumacher et al. 1993 5175, Y13671, Sfs.deleyi |
"Spirillum" 5175 | ATCC 51133 | DSM 6946
Sulfurospirillum arcachonense VP Finster et al. 1997 F1F6, Y11561, Sfs.arcach | DSMZ
9755, Y11561, Sfs.arcach
Sulfurospirillum arsenophilum VP Stolz et al. 1999 MIT-13, U85964, Sfs.arseno | ATCC
700056
Sulfurospirillum barnesii VP Stolz et al. 1999 SES-3, AF038843, Sfs.barnes | SES-3,
U41564, Gs.barnesi | ATCC 700032
Sulfurospirillum halorespirans VP Luijtgen et al. 2003 PCE-M2, AF218076 | ATCC
BAA-583 | DSM 13726
Sulfurospirillum multivorans VP (Scholz-Muramatsu et al. 2002) Luijtgen et al. 2003 311
<- Dehalospirillum multivorans (basonym) PCE-M2, AF218076 | DSM 12446
Family II. HelicobacteraceaeNP
Genus I. Helicobacter VP (T)
Helicobacter pylori VP (T) (Marshall et al. 1986) Goodwin et al. 1989 <- Campylobac-
ter pylori (basonym) ATCC 43504, M88157, Hlb.pylori | ATCC 43504, M88157,
Hlb.pylori | ATCC 43504, U01330, Hlb.pylor6 | CCUG 17874 | DSM 4867 | JCM
7653 | LMG 7539 | NCTC 11637, Z25741, Hlb.pylor2
Helicobacter acinonychis VP Eaton et al. 1993 90-119, M88148, Hlb.acinyc | ATCC
51101 | CCUG 29263, M88148, Hlb.acinyc
Helicobacter aurati VP Patterson et al. 2002 312 MIT 97-5075, AF297868 | ATCC BAA-1
313
Helicobacter bilis VP Fox et al. 1997 Hb1, U18766, Hlb.bilis1 | ATCC 51630
Helicobacter bizzozeronii VP Hnninen et al. 1996 CCUG 35045, Y09404, Hlb.bizzoz
Helicobacter canadensis VP Fox et al. 2002 314 MIT 98-5491 | ATCC 700968 | NLEP-
16143, AF262037
Helicobacter canis VP Stanley et al. 1994 ATCC 51401 | NCTC 12739, L13464, Hlb.ca-
nis
Helicobacter cholecystus VP Franklin et al. 1997 Hkb-1, U46129, Hlb.cholec
Helicobacter cinaedi VP (Totten et al. 1985) Vandamme et al. 1991 <- Campylobac-
ter cinaedi (basonym) 165 | Fennell 165 | ATCC 35683 | CCUG 18818, M88150,
Hlb.cinaed | DSM 5359 | LMG 7543
Helicobacter felis VP Paster et al. 1991 CS1, M57398, Hlb.felCS1 | ATCC 49179,
M57398, Hlb.felCS1
Helicobacter fennelliae VP (Totten et al. 1985) Vandamme et al. 1991 <- Campylobacter
fennelliae (basonym) 231 | Fennell 231 | ATCC 35684 | CCUG 18820, M88154,
Hlb.fennel | DSM 7491 | LMG 7546 | NCTC 11612
Helicobacter hepaticus VP Fox et al. 1994 Hh-2, U07574, Hlb.hepat4 | ATCC 51448
Helicobacter ganmani VP Robertson et al. 2001 CMRI H02, AF000221 | CCUG 43526
| CIP 106846
Helicobacter mesocricetorum VP Simmons et al. 2000 MU 97-1514, AF072471 | ATCC

700932
Helicobacter muridarum VP Lee et al. 1992 ST1, M80205, Hlb.murida | ATCC 49282,
M80205, Hlb.murida
Helicobacter mustelae VP (Fox et al. 1988) Goodwin et al. 1989 <- Campylobacter
mustelae (basonym) R85-13-6 | ATCC 43772, M35048, Hlb.mustel
311
31 2
31 3
31 4
139
Helicobacter nemestrinae VP Bronsdon et al. 1991 T81213-NTB | ATCC 49396,

X67854, Hlb.nemstr | DSM 7492
Helicobacter pametensis VP Dewhirst et al. 1994 Seymour B9, M88147, Hlb.pamten |
ATCC 51478 | CCUG 29255
Helicobacter pullorum VP Stanley et al. 1995 NCTC 12824, L36141, Hlb.pullr1
Helicobacter rodentium VP Shen et al. 1997 MIT 95-1707, U96296, Hlb.rodent | ATCC
700285
Helicobacter salomonis VP Jalava et al. 1997 Inkinen, U89351, Hlb.salomn | CCUG
37845
Helicobacter trogontum VP Mendes et al. 1996 ATCC 700114 | LRB 8581, U65103,
Hlb.trogon
Helicobacter typhlonius VP Franklin et al. 2002 315 MIT 97-6810, AF127912 | ATCC
BAA-367 316
Genus II. Sulfurimonas VP
Sulfurimonas autotrophica VP (T) Inagaki et al. 2003 OK 10, AB088431 | ATCC BAA-
671 | JCM 11897
Genus III. Thiovulum AL 317
Thiovulum majus AL (T) Hinze 1913 no culture isolated, M92323
Genus IV. Wolinella VP
Wolinella succinogenes VP (T) (Wolin et al. 1961) Tanner et al. 1981 <- Vibrio succino-
genes (basonym) ATCC 29543, M26636, Wln.succin | ATCC 29543, M88159,
Wln.succi2 | DSM 1740
Wolinella curva VP Tanner et al. 1984 -> Campylobacter curvus ATCC 35224, L04313
| CCUG 13146 | DSM 6644 | LMG 7609 | NCTC 11649 | VPI 9584
Wolinella recta VP Tanner et al. 1981 -> Campylobacter rectus ATCC 33238, L04317
| CCUG 20446 | DSM 3260 | FDC 371 | NCTC 11489
Family III. NautiliaceaeNP

Genus I. Nautilia VP (T)
Nautilia lithotrophica VP (T) Miroshnichenko et al. 2002 318 525 T, | DSM 13520,
AJ404370
319
Genus II. Caminibacter VP

Caminibacter hydrogeniphilus VP (T) Alain et al. 2002 AM1116, AJ309655 | DSM 14510
| CIP 107140
Caminibacter profundus VP Miroshnichenko et al. 2004 CR, AJ535664 | DSM 15016 |

JCM 11957
Family IV. "Hydrogenimonaceae"
Genus I. Hydrogenimonas VP
Hydrogenimonas thermophila VP (T) Takai et al. 2004 EP1-55-15, AB105048 | ATCC
BAA-737 | JCM 11971
Phylum BXIII. " Firmicutes"
Class I. "Clostridia "
Order I. Clostridiales AL 320
Family I. Clostridiaceae AL
Genus I. Clostridium AL (T)
31 5
31 6
31 7
R obertson et al. pla ce Thio vulum in to th e Helicob act eriac eae rathe r than the Camp ylobac teriac eae. The tre e wh ic h is prese nted in their
chapt er su ggests th at Thiovulu m, A lvin ella an d several therma l v en t c lon es may fo rm a sep arate line o f de sc ent.
31 8
31 9
32 0
L udwig n otes th at th e E ubacteriaceae and Pep tostreptoc oc c ace ae are s is ter grou ps within the Clo stridia les .
140
Clostridium butyricum AL (T) Prazmowski 1880 ATCC 19398, M59085, C.butyricm |

DSM 552 | NBRC 13949 | NCIB 7423 | NCTC 7423 | VKM B-1773
Clostridium absonum AL Nakamura et al. 1973 HA 7103 | ATCC 27555 | DSM 599,
X77842, C.absonum | NCTC 10984
Clostridium aceticum VP Gottschalk and Braun 1981 ATCC 35044 | DSM 1496, Y18183
Clostridium acetireducens VP rlygsson et al. 1996 30A, X79862, C.acetired | DSM
10703
Clostridium acetobutylicum AL McCoy et al. 1926 ATCC 824, U16166, C.acebuty9 |
ATCC 824, X78070, C.acebuty3 | DSM 792 | NCIB 8052, S46735, C.beijeri5 | NCIB
8052, U16165, C.beijeri6 | NCIB 8052, X68182, C.beijeri4 | NCIB 8052, X81021,
C.beijeri7 | VKM B-1787
Clostridium acidilosi VP Kuhner et al. 2000 CK74, AJ237756 | DSM 12555
Clostridium acidurici AL (Liebert 1909) Barker 1938 ATCC 7906, M59084, C.acidiuri
| DSM 604 | IMG 1642
Clostridium aerotolerans VP van Gylswyk and van der Toorn 1987 X8A62 | ATCC
43524 | DSM 5434, X76163, C.aerotole
Clostridium akagii VP Kuhner et al. 2000 CK58, AJ237755 | DSM 12554
Clostridium aldrichii VP Yang et al. 1990 OGI 112 | P-1 | ATCC 49358 | DSM 6149,
X71846, C.aldrichi
Clostridium algidicarnis VP Lawson et al. 1995 NCFB 2931, X77676, C.algidcrn
Clostridium algidixylanolyticum VP Broda et al. 2000 SPL73, AF092549 | DSM 12273
Clostridium aminophilum VP Paster et al. 1993 F, L04165, C.aminophi | ATCC 49906 |
DSM 10710
Clostridium aminovalericum AL Hardman and Stadtman 1960 ATCC 13725 | DSM 1283,
X73436, C.aminova2 | NCIB 10631
Clostridium arcticum VP (ex Jordan and McNicol 1979) Cato et al. 1988 Jordan and
McNicol no.III
Clostridium argentinense VP Suen et al. 1988 ATCC 27322, X68316, C.argenti2
Clostridium aurantibutyricum AL Hellinger 1944 ATCC 17777 | DSM 793 | NCIB 10659,
S46736, C.auranti2 | NCIB 10659, X68183, C.aurantib
Clostridium baratii AL (Prevot 1938) Holdeman and Moore 1970 = Clostridium parap-
erfringens (junior heterotypic synonym) = Clostridium perenne (junior heterotypic
synonym) ATCC 27638, X68174, C.barati3 | DSM 601
Clostridium barkeri AL Stadtman et al. 1972 -> Eubacterium barkeri ATCC 25849,
M23927, Eub.barker | DSM 1223 | NCIB 10623 | VKM B-1775 | VPI 5359
Clostridium beijerinckii AL Donker 1926 ATCC 25752 | DSM 791, X68179, C.beijeri2 |
NCIB 9362, X68180, C.beijeri3 | VPI 5481
Clostridium bifermentans AL (Weinberg and Seguin 1918) Bergey et al. 1923 ATCC
638, X75906, C.biferm_M
Clostridium bolteae VP Song et al. 2003 WAL 16351, AJ508452 | ATCC BAA-613 |
CCUG 46953
Clostridium botulinum AL (van Ermengem 1896) Bergey et al. 1923 ATCC 25763,
L37585, C.botuliA3
Clostridium bowmanii VP Spring et al. 2003 A-1/C-an/C1 | ATCC BAA-581 | DSM
14206, AJ506119, AJ506120 (two clones from same strain)
Clostridium bryantii VP Stieb and Schink 1985 -> Syntrophospora bryantii CuCa1 |
DSM 3014 | DSM 3014A
Clostridium cadaveris AL (Klein 1899) McClung and McCoy 1957 T4 | ATCC 25783,
M59086, C.cadavers | DSM 1284 | NCIB 10676 | VPI 2718
Clostridium caminithermale VP Brisbarre et al. 2003 DVird3 | CIP 107654 | DSM 15212,
AF458779
Clostridium carnis AL (Klein 1904) Spray 1939 ATCC 25777, M59091, C.carnis | CDC
KA 84 | DSM 1293 | NCIB 10670 | VPI 1635 B
Clostridium celatum AL Hauschild and Holdeman 1974 ATCC 27791 | DSM 1785,
X77844, C.celatum | VPI 8759-1
141
Clostridium celerecrescens VP Palop et al. 1989 18A | CECT 954 | DSM 5628, X71848,
C.celerecr
Clostridium cellobioparum AL Hungate 1944 ATCC 15832 | DSM 1351, X71856, C.cel-
biopa | NCIB 10669
Clostridium cellulofermentans VP Yanling et al. 1991 AS 1.1775
Clostridium cellulolyticum VP Petitdemange et al. 1984 H10 | ATCC 35319, X71847,
C.cellulol | DSM 5812 | JCM 6584
Clostridium cellulosi VP Yanling et al. 1991 AS 1.1777
Clostridium cellulovorans VP Sleat et al. 1985 743B | ATCC 35296 | DSM 3052, X71849,
C.celluvor | DSM 3052, X73438, C.celluvo2 | OCM 3
Clostridium chartatabidum VP Kelly et al. 1996 163 | DSM 5482, X71850, C.chartata
Clostridium chauvoei AL (Arloing et al. 1887) Scott 1928 ATCC 10092, U51843,
C.chauvoei | DSM 7528 | NCIMB 10665
Clostridium clostridioforme AL (Burri and Ankersmit 1906) Kaneuchi et al. 1976 ATCC
25537, M59089 | DSM 933 | VPI 0316
Clostridium coccoides AL Kaneuchi et al. 1976 CLC-1 | ATCC 29236 | DSM 935 | NCTC
11035
Clostridium cochlearium AL (Douglas et al. 1919) Bergey et al. 1923 = Clostridium
lentoputrescens (junior heterotypic synonym) ATCC 17787, M59093, C.cochlear
| DSM 1285 | NCIB 10633
Clostridium colicanis VP Greetham et al. 2003 3WC2 | CCUG 44556 | DSM 13634,
AJ420008
Clostridium cocleatum AL Kaneuchi et al. 1979 I50, Y18188 | ATCC 29902 | DSM 1551
| NCTC 11210
Clostridium colinum VP Berkhoff 1985 72042 | ATCC 27770 | DSM 6011, X76748,
C.colinum | JCM 5831
Clostridium collagenovorans VP Jain and Zeikus 1988 SG | ATCC 49001 | DSM 3089,
X73439, C.colgenvo
Clostridium cylindrosporum VP Andreesen et al. 1985 HC-1, Y18179 | ATCC 7905 |
DSM 605 | IMG 1641
Clostridium dif?cile AL (Hall and OToole 1935) Prevot 1938 90556-M6S | ATCC 9689
| DSM 1296 | NCIB 10666 | NCTC 11209, X73450, C.dif?cil
Clostridium diolis VP Biebl and Sprer 2003 88-273 | ATCC BAA-557 | DSM 15410 |
SH1, AJ458418
Clostridium disporicum VP Horn 1987 DS1, Y18176 | ATCC 43838 | DSM 5521 | NCIB
12424
Clostridium durum AL Smith and Cato 1974 -> Paenibacillus durus ATCC 27763,
X77846
Clostridium estertheticum subsp. estertheticum VP Collins et al. 1993 emend. Spring et
al. 2003. MT1 | ATCC 51377 | CIP 105093 | DSM 8809 | NCIMB 12511, X68181,
S46734, C.esterthe, C.esterth2
Clostridium estertheticum subsp. laramiense VP (Kalchayanand et al. 1993) Spring et
al. 2003 <- Clostridium laramiense (basonym) NK1 | ATCC 51254 | DSM 14864,
AJ506115
Clostridium fallax AL (Weinberg and Seguin 1915) Bergey et al. 1923 ATCC 19400,
M59088, C.fallax | DSM 2631 | NCTC 8380 | VPI 5729
Clostridium felsineum AL (Carbone and Tombolato 1917) Bergey et al. 1939 541 | ATCC
17788 | DSM 794, X77851, C.felsineu | NCIB 10690
Clostridium fervidum VP Patel et al. 1987 -> Caloramator fervidus Rt4-B1 | ATCC
43204, L09187, Clr.fervid | DSM 5463
Clostridium ?metarium VP Kotsyurbenko et al. 1997 DSM 9179 | Z-2189, AF126687
Clostridium formicaceticum AL Andreesen et al. 1970 A1, X77836 | ATCC 27076 | DSM
92
Clostridium frigidicarnis VP Broda et al. 1999 SPL77A | DSM 12271, AF069742
142
Clostridium frigoris VP Spring et al. 2003 D-1/D-an/II | ATCC BAA-579 | DSM 14204,
AJ506116, AJ506117
Clostridium gasigenes VP Broda et al. 2000 DB1A, AF092548 | DSM 12272
Clostridium ghonii AL Prevot 1938 ATCC 25757
Clostridium glycolicum AL Gaston and Stadtman 1963 ATCC 14880 | DSM 1288,
X76750, C.glycolic | NCIB 10632
Clostridium grantii VP Mountfort et al. 1996 A-1, X75272, C.grantii | DSM 8605
Clostridium haemolyticum AL (Hall 1929) Scott et al. 1935 ATCC 9650, AB037910 |
DSM 5565, Y18173 | NCIB 10664
Clostridium halophilum VP Fendrich et al. 1991 M1 | ATCC 49637 | DSM 5387, X77837,
C.halphlum
Clostridium hastiforme AL MacLennan 1939 ATCC 33268 | DSM 5675, X77848, C.has-
tifor | DSM 5675, X80841, C.hastifo2 | VPI 12193
Clostridium hathewayi VP Steer et al. 2002 1313, AJ311620 | CCUG 43506 | DSM 13479
Clostridium herbivorans VP Varel et al. 1995 54408, L34418 | ATCC 49925
Clostridium hiranonis VP Kitahara et al. 2001 TO-931, AB023970 | DSM 13275 | JCM
10541
Clostridium histolyticum AL (Weinberg and Seguin 1916) Bergey et al. 1923 ATCC
19401, M59094, C.histolyt | DSM 2158 | NCIB 503 | NCTC 503
Clostridium hungatei VP Monserrate et al. 2001 321 AD, AF020429 | ATCC 700212
Clostridium hylemonae VP Kitahara et al. 2000 TN-271 | JCM 10539, AB023973
Clostridium homopropionicum VP Drner and Schink 1991 LuHBu1 | DSM 5847,
X76744, C.homoprop
Clostridium hydroxybenzoicum VP Zhang et al. 1994 -> Sedimentibacter hydroxyben-
zoicus JW/Z-1, L11305, C.hybenzoi | ATCC 51151 | DSM 7310
Clostridium indolis AL McClung and McCoy 1957 ATCC 25771, Y18184 | DSM 755 |
NCIB 9731
Clostridium innocuum AL Smith and King 1962 B-3, M23732, C.innocuum | ATCC
14501, M23732, C.innocuum | DSM 1286 | NCIB 10674
Clostridium intestinale VP Lee et al. 1989 Catt39 | ATCC 49213 | DSM 6191, X76740,
C.intestin | JCM 7506
Clostridium irregulare AL (Choukevitch 1911) Prevot 1938 ATCC 25756 | DSM 2635,
X73447, C.irregulr | VPI 4428
Clostridium isatidis VP Padden et al. 1999 Wv6, X98395 | NCFB 3071
Clostridium josui VP Sukhumavasi et al. 1988 III | FERM P-9684, AB011057, C.josui1
Clostridium kluyveri AL Barker and Taha 1942 K1 | ATCC 12489 | ATCC 8527, M59092,
C.kluyveri | DSM 555 | NCIB 10680
Clostridium lactatifermentans VP van der Wielen et al. 2002 G17, AY033434 | DSM
14214 | LMG 20954
Clostridium lacusfryxellense VP Spring et al. 2003 C/C-an/B1 | ATCC BAA-580 | DSM
14205, AJ506118
Clostridium laramiense VP Kalchayanand et al. 1993 -> Clostridium estertheticum
subsp. laramiense NK1 | ATCC 51254
Clostridium lentocellum VP Murray et al. 1987 RHM5 | DSM 5427, X71851, C.lentocel
| DSM 5427, X76162, C.lentoce2 | NCIB 11756
Clostridium lentoputrescens AL Hartsell and Rettger 1934 = Clostridium cochlearium

(senior heterotypic synonym) ATCC 17794
Clostridium leptum AL Moore et al. 1976 ATCC 29065, M59095, C.leptum | DSM 753 |
VPI T7-24-1
Clostridium limosum AL Andre 1948 ATCC 25620 | DSM 1400 | NCIB 10638 | VPI 2700
Clostridium litorale VP Fendrich et al. 1991 W6 | ATCC 49638 | DSM 5388, X77845,
C.litorale
32 1
143
Clostridium lituseburense AL (Laplanche and Saissac 1948) McClung and McCoy 1957
A25K | ATCC 25759, M59107, C.litusebu | DSM 797 | NCIB 10637 | VPI 2751
Clostridium ljungdahlii VP Tanner et al. 1993 ATCC 49587 | PETC, M59097, C.ljung-
dah
Clostridium lortetii VP Oren 1984 -> Sporohalobacter lortetii MD-2 | ATCC 35059,
M59122, Shb.lortet | DSM 3070
Clostridium magnum VP Schink 1984 Wo Bd P1 | ATCC 49199 | DSM 2767, X77835,
C.magnum
Clostridium malenominatum AL (Weinberg et al. 1937) Spray 1948 ATCC 25776,
M59099, C.malenomi | DSM 1127 | NCIB 10667 | Prvot 1503 | VPI 2721
Clostridium mangenotii AL (Prvot and Zimms-Chaverou 1947) McClung and McCoy
1957 ATCC 25761, M59098, C.mangenot | DSM 1289 | NCIB 10639 | VPI 4622
Clostridium mayombei VP Kane et al. 1992 SFC-5 | ATCC 51428 | DSM 6539
Clostridium methoxybenzovorans VP Mechichi et al. 1999 SR3, AF067965 | DSM 12182
Clostridium methylpentosum VP Himelbloom and Canale-Parola 1989 R2, Y18181 |
ATCC 43829 | DSM 5476
Clostridium neopropionicum VP Tholozan et al. 1995 X4 | DSM 3847, X76746, C.neo-
propi
Clostridium nexile AL Holdeman and Moore 1974 ATCC 27757 | DSM 1787, X73443,
C.nexile | VPI C48-37
Clostridium novyi AL (Migula 1894) Bergey et al. 1923 151 | ATCC 17861, L37594,
C.novyi3 | ATCC 17861, M59100, C.novyi
Clostridium oceanicum AL Smith 1970 ATCC 25647, M59101, C.oceanicm | DSM 1290
| NCIB 10625
Clostridium orbiscindens VP Winter et al. 1991 265, Y18187 | ATCC 49531 | DSM 6740
Clostridium oroticum AL (Wachsman and Barker 1954) Cato et al. 1968 ATCC 13619,
M59109, C.oroticum | DSM 1287 | NCIB 10650
Clostridium oxalicum VP Dehning and Schink 1990 -> Oxalophagus oxalicus Alt Ox1
| DSM 5503, X77840, Oxl.oxalic
Clostridium papyrosolvens VP Madden et al. 1982 DSM 2782, X71852, C.papyroso |

NCIB 11394
Clostridium paradoxum VP Li et al. 1993 JW-YL-7 | DSM 7308, Z69942, C.pardoxu2
Clostridium paraperfringens AL Nakamura et al. 1970 = Clostridium baratii (senior
heterotypic synonym) ATCC 27639
Clostridium paraputri?cum AL (Bienstock 1906) Snyder 1936 ATCC 25780, X75907,
C.pputrif2 | DSM 2630, X73445, C.pputri? | NCIB 10671 | VPI 1584
Clostridium pascui VP Wilde et al. 1997 Cm19, X96736, C.pascui1 | DSM 10365,
X96736, C.pascui1
Clostridium pasteurianum AL Winogradsky 1895 ATCC 6013, M23930, C.pasteuri |
DSM 525 | IMET 11346 | NCIB 9486
Clostridium peptidivorans VP Mechichi et al. 2000 TMC4 | DSM 12505, AF156796
Clostridium perenne AL (Prevot 1940) McClung and McCoy 1957 = Clostridium
baratii (senior heterotypic synonym) ATCC 25782
Clostridium perfringens AL (Veillon and Zuber 1898) Hauduroy et al. 1937 ATCC
13124, M59103, C.perfring | DSM 756 | NCIB 6125 | NCTC 8237
Clostridium pfennigii VP Krumholz and Bryant 1985 -> Oxobacter pfennigii V5-2 |
DSM 3222, X77838, Ox.pfennig
Clostridium phytofermentans VP Warnik et al. 2002 322 ISDg | ATCC 700394 | AF020431
Clostridium piliforme VP Duncan et al. 1993 , L07416, C.piliform
Clostridium polysaccharolyticum VP (van Gylswyk 1981) van Gylswyk et al. 1983 <-
Fusobacterium polysaccharolyticum (basonym) B | ATCC 33142 | DSM 1801,
X71858, C.polsacch | DSM 1801, X77839, C.polsacc2
32 2
144
Clostridium populeti VP Sleat and Mah 1985 743A | ATCC 35295, X71853, C.populeti
| DSM 5832 | OCM 2
Clostridium propionicum AL Cardon and Barker 1946 ATCC 25522 | DSM 1682,
X77841, C.propioni | NCIB 10656
Clostridium proteoclasticum VP Attwood et al. 1996 B316, U37378, C.proteocl | ATCC
51982
Clostridium proteolyticum VP Jain and Zeikus 1988 CG | DSM 3090, X73448, C.prote-
oly
Clostridium psychrophilum VP Spring et al. 2003 A-1/C-an/I | ATCC BAA-582 | DSM
14207, AJ297443
Clostridium puniceum VP Lund et al. 1981 ATCC 43978 | BL 70/20 | DSM 2619,
X71857, C.punecium | DSM 2619, X73444, C.puneciu2 | NCIB 11596
Clostridium purinilyticum VP Drre et al. 1981 WA-1 | ATCC 33906, M60491 | DSM
1384
Clostridium putrefaciens AL (McBryde 1911) Sturges and Drake 1927 ATCC 25786,
Y18177, AF127024 | DSM 1291 | NCTC 9836 | VPI 5395
Clostridium putri?cum (Trevisan 1889) Reddish and Rettger 1922 nom. rej. ATCC
25784 | DSM 1734, X73442, C.putri? c | NCIB 10677 | Prvot 2318 | VPI 4440-1
Clostridium quercicolum AL Stankewich et al. 1971 -> Dendrosporobacter quercicolus
ATCC 25974, M59110, C.quercico | DSM 1736
Clostridium quinii VP Svensson et al. 1995 BS1 | DSM 6736, X76745, C.quinii
Clostridium ramosum AL (Veillon and Zuber 1898) Holdeman et al. 1971 ATCC 25582
| DSM 1402, X73440, C.ramosum2 | NCIB 10673 | VPI 0427
Clostridium rectum AL (Heller 1922) Holdeman and Moore 1972 ATCC 25751 | DSM
1295 | NCIB 10651, X77850, C.rectum | VPI 2488
Clostridium roseum VP (McCoy and McClung 1935) Cato et al. 1988 ATCC 17797 |
DSM 51, Y18171
Clostridium saccharobutylicum VP Keis et al. 2001 NCP 262, U16147 | ATCC BAA-117
| DSM 13864
Clostridium saccharoperbutylacetonicum VP Keis et al. 2001 323 N14 (HTM), U16122

| ATCC 27021
Clostridium saccharolyticum VP Murray et al. 1982 WM1 | ATCC 35040, Y18185 | DSM
2544 | NRC 2533
Clostridium sardiniense AL Prevot 1938 ATCC 33455, X73446 | DSM 2632 | VPI 2971
Clostridium sartagoforme AL Partansky and Henry 1935 ATCC 25778, Y18175 | DSM
1292 | NCIB 10668 | VPI 3195
Clostridium scatologenes AL (Weinberg and Ginsbourg 1927) Prevot 1948 ATCC
25775, M59104, C.scatolog | DSM 757 | NCIB 8855 | VPI 5393
Clostridium scindens VP Morris et al. 1985 Bokkenheuser 19, Y18186, AF262238 |
ATCC 35704 | DSM 5676 | VPI 13733
Clostridium septicum AL (Mace 1889) Ford 1927 Pasteur III | ATCC 12464, U59278,
C.septicum | CIP 61.10 | DSM 7534 | NCIMB 547 | NCTC 547
Clostridium sordellii AL (Hall and Scott 1927) Prvot 1938 ATCC 9714, M59105, C.sor-
delli | DSM 2141 | NCIB 10717
Clostridium sphenoides AL (Douglas et al. 1919) Bergey et al. 1923 ATCC 19403 | DSM
632, X73449, C.sphenoid | NCIB 10627 | NCTC 507
Clostridium spiroforme AL Kaneuchi et al. 1979 ATCC 29900, X75908, C.spirofo2 |
DSM 1552 | NCTC 11211 | VPI C28-23-1A
Clostridium sporogenes AL (Metchnikoff 1908) Bergey et al. 1923 McClung 2004
| ATCC 25781 | ATCC 3584, M59115, C.sporogen | ATCC 3584, X68189,
C.sporoge2 | DSM 795 | NBRC 13950 | NCIB 10696

Clostridium sporosphaeroides AL Soriano and Soriano 1948 ATCC 25781, M59116,
C.sporosph | DSM 1294, X66002, C.sporosp2 | NCIB 10672 | VPI 4527
32 3
145
Clostridium stercorarium subsp. stercorarium VP Madden 1983 324 DSM 6239 | NCIB
11754, L09174, C.stercora
Clostridium stercorarium subsp. leptospartum VP (Toda et al. 1989) Fardeau et al.
2001 325 <- Thermobacteroides leptospartum (basonym) 326 C1770 | ATCC 35414,
AF266461 | DSM 9219
Clostridium stercorarium subsp. thermolacticum VP (Le Ruyet et al. 1988) Fardeau et
al. 2001 327 <- Clostridium thermolacticum (basonym) TX41, X72870 , C.thlacti3
| ATCC 43739 | DSM 2910
Clostridium sticklandii AL Stadtman and McClung 1957 HF | ATCC 12662 | DSM 519 |
NCIB 10654
Clostridium subterminale AL (Hall and Whitehead 1927) Spray 1948 ATCC 25774,
L37595, C.subterm4 | ATCC 25774, M59106, C.subtermi | CDC KA152 | DSM 6970
| VPI 2023
Clostridium symbiosum AL (Stevens 1956) Kaneuchi et al. 1976 ATCC 14940, M59112,
C.symbiosm | DSM 934
Clostridium termitidis VP Hethener et al. 1992 CT1112 | ATCC 51846 | DSM 5398
Clostridium tertium AL (Henry 1917) Bergey et al. 1923 ATCC 14573, Y18174,
AJ245413 | DSM 2485 | IAM 14196 | NCIB 10697
Clostridium tetani AL (Flgge 1886) Bergey et al. 1923 ATCC 19406 | NCTC 279,
X74770, C.tetani
Clostridium tetanomorphum VP Wilde et al. 1989 259E.III | ATCC 49273 | DSM 4474 |
NCTC 543
Clostridium thermaceticum AL Fontaine et al. 1942 -> Moorella thermoacetica ATCC
35608 | DSM 521
Clostridium thermautotrophicum VP Wiegel et al. 1982 -> Moorella thermoautotroph-
ica JW 701/3, X58354, Mrl.thaut5 | ATCC 33924 | DSM 1974
Clostridium thermoalcaliphilum VP Li et al. 1994 JW/YL23-2, L11304, C.thalcali |
ATCC 51508 | DSM 7309
Clostridium thermobutyricum VP Wiegel et al. 1989 ATCC 49875 | DSM 4928 | JW171K
Clostridium thermocellum AL Viljoen et al. 1926 ATCC 27405 | DSM 1237, L09173,
C.thcellum | NCIB 10682
Clostridium thermocopriae VP Jin et al. 1988 -> Thermoanaerobacter thermocopriae
JT3-3 | IAM 13577, L09167, Tab.thcop2
Clostridium thermohydrosulfuricum AL Klaushofer and Parkkinen 1965 -> Ther-

moanaerobacter thermohydrosulfuricus E 100-69, L09161 | ATCC 35045 | DSM
567 | NCIB 10956 | VKM B-1834
Clostridium thermolacticum VP Le Ruyet et al. 1988 -> Clostridium stercorarium ther-
molacticum TX 41, X72870, C.thlacti3 | ATCC 43739 | DSM 2910
Clostridium thermopalmarium VP Soh et al. 1991 BVP | ATCC 51427 | DSM 5974,
X72869
Clostridium thermopapyrolyticum VP Mndez et al. 1991 UBA 305
Clostridium thermosaccharolyticum AL McClung 1935 -> Thermoanaerobacterium
thermosaccharolyticum NCA 3814 | ATCC 7956, M59119, Tbm.thsacc | DSM
571 | NCIB 9385
Clostridium thermosuccinogenes VP Drent et al. 1995 IC, Y18180 | DSM 5807, Y18180
Clostridium thermosulfurogenes VP Schink and Zeikus 1983 -> Thermoanaerobac-
terium thermosulfurigenes 4B | ATCC 33743, L09171 | DSM 2229
32 4
32 5
32 6
The basonym Thermob acteroid es le ptospartu m b ecame in valid up on tra ns fer of the ty pe spe cies , T. ac etoet hylic us b y Rainey, et a l. (199 3)
J. Bact., 1 45: 4772 .
32 7
146
Clostridium thiosulfatireducens VP Hernandez-Eugenio et al. 2002 Lup 21, AF317650

| CIP 106908 | DSM 13105
Clostridium tyrobutyricum AL van Beynum and Pette 1935 ATCC 25755, M59113, C.ty-
robuty | DSM 2637 | NCIB 10635 | VPI 5392
Clostridium uliginosum VP Matthies et al. 2001 CK55, AJ276992 | ATCC BAA-53 |
DSM 12992
Clostridium ultunense VP Schnrer et al. 1996 BS, Z69293, C.ultunens | DSM 10521
Clostridium villosum AL Love et al. 1979 -> Filifactor villosus ATCC 33388 | DSM
1645, X73452, Flf.villos | NCTC 11220 | VPB 3349
Clostridium vincentii VP Mountfort et al. 1997 lac-1, X97432 | DSM 10228
Clostridium viride VP Buckel et al. 1995 T2-7, X81125, C.viride | ATCC 43977 | DSM
6836, X81125, C.viride
Clostridium xylanolyticum VP Rogers and Baecker 1991 ATCC 49623, X71855, C.xy-
lanoly | DSM 6555, X76739, C.xylanol2
Clostridium xylanovorans VP Mechichi et al. 2000 HESP1, AF116920 | DSM 12503
Genus II. Acetivibrio VP
Acetivibrio cellulolyticus VP (T) Patel et al. 1980 = Acetivibrio cellulosolvens (junior
heterotypic synonym) CD2 | ATCC 33288, L35516, Acv.cellyt | DSM 1870 | NRC
2248
Acetivibrio cellulosolvens VP Khan et al. 1984 = Acetivibrio cellulolyticus (senior het-
erotypic synonym) BAS | ATCC 35928, L35515, Acv.celly2 | NRC 2936
Acetivibrio ethanolgignens VP Robinson and Ritchie 1981 77-6 | ATCC 33324 | DSM
3005
Acetivibrio multivorans VP Tanaka et al. 1992 PeC1 | ATCC 49731 | DSM 6139
Genus III. Acidaminobacter VP
Acidaminobacter hydrogenoformans VP (T) Stams and Hansen 1985 glu 65, AF016691,
Aab.hydfor | DSM 2784
Genus IV. Alkaliphilus VP
Alkaliphilus transvaalensis VP (T) Takai et al. 2001 SAGM1, AB037677, AB037677 |
ATCC 700919 | JCM 10712
Alkaliphilus crotonatoxidans VP Cao et al. 2003 strain B11-2, AF467248 | AS 1.2897 |
JCM 11672
Genus V. Anaerobacter VP
Anaerobacter polyendosporus VP (T) Duda et al. 1996 PS-1, Y18189 | DSM 5272 | VKM
B-1724
Genus VI. Anaerotruncus VP
Anaerotruncus colihominis VP (T) Lawson et al. 2004 WAL 14565, AJ315980 | CCUG
45055 | CIP 107754
Genus VII. Bryantella VP
Bryantella formatexigens VP (T) Wolin et al. 2004 I-52, AJ318527 | CCUG 46960 | DSM
14469
Genus VIII. Caminicella VP
Caminicella sporogenes VP (T) Alain et al. 2002 AM1114, AJ320233 | CIP 107141 | DSM
14501
Genus IX. Caloramator VP
Caloramator fervidus VP (T) (Patel et al. 1987) Collins et al. 1994 <- Clostridium fer-
vidum (basonym) Rt4-B1 | ATCC 43204, L09187, Clr.fervid | DSM 5463
Caloramator coolhaasii VP Plugge et al. 2000 Z, AF104215 | DSM 12679
Caloramator indicus VP Chrisostomos et al. 1996 IndiB4, X75788, Clr.indicu | ACM
3982
Caloramator proteoclasticus VP Tarlera et al. 1997 U, X90488 | DSM 10124
Caloramator viterbiensis VP Seyfried et al. 2002 JW/MS-VS5, AF181848 | DSM 13723
| ATCC PTA 584
Genus X. Caloranaerobacter VP
147
Caloranaerobacter azorensis VP Wery et al. 2001 MV1087, AJ272422 | CNCM I-2543

| DSM 13643
Genus XI. Coprobacillus VP

Coprobacillus cateniformis VP (T) Kageyama and Benno 2000 RCA1-24 | JCM 10604,
AB030219
Genus XII. Dorea VP
Dorea formicigenerans VP (T) (Holdeman and Moore 1974) Taras et al. 2002 328 <- Eu-
bacterium formicigenerans (basonym) ATCC 27755, L34619, Eub.formic | DSM
3992 | JCM 10342 | VPI C8-13
Dorea longicatena VP Taras et al. 2002 111-35, AJ132842 | CCUG 45247 | DSM 13814
| JCM 11232
329
Genus XIII. Faecalibacterium VP

Faecalibacterium prausnitzii VP (T) (Hauduroy et al. 1937) Duncan et al. 2002 <- Fu-
sobacterium prausnitzii (basonym) ATCC 27768, AJ413954 | NCIMB 13872
Genus XIV. Hespellia VP
Hespellia stercorisuis VP (T) Whitehead et al. 2004 PC18 | ATCC BAA-677 | CCUG
46279 | NRRL B-23456, AF445264
Hespellia porcina VP Whitehead et al. 2004 PC80 | ATCC BAA-674 | NRRL B-23458,
AF445239, | ,
Genus XV. Natronincola VP
Natronincola histidinovorans VP (T) Zhilina et al. 1999 Z-7940, Y16716 | DSM 11416
Genus XVI. Oxobacter VP
Oxobacter pfennigii VP (T) (Krumholz and Bryant 1985) Collins et al. 1994 <- Clostrid-
ium pfennigii (basonym) V5-2 | DSM 3222, X77838, Ox.pfennig
Genus XVII. Parasporobacterium VP
Parasporobacterium paucivorans VP (T) Lomans et al.2004 SYR1, AJ272036 | DSM
15970, | NCCB 100052
Genus XVIII. Sarcina AL
Sarcina ventriculi AL (T) Goodsir 1842 ATCC 19633 | ATCC 29068 | DSM 286, X76649,
Src.vntri2
Sarcina maxima AL Lindner 1888 K66 | ATCC 33910 | DSM 316, X76650, Src.maxima |
IMET B 103
Genus XIX. Soehngenia VP
Soehngenia saccharolytica VP (T) Parshina et al. 2003 ATCC BAA-502 | BOR-Y,
AY353956 | DSM 12858
Sporobacter VP
Sporobacter termitidis VP (T) Grech-Mora et al. 1996 SYR, Z49863, Sb.termiti | DSM
10068
Genus XX. Tepidibacter VP
Tepidibacter thalassicus VP (T) Slobodkin et al. 2003 SC 562, AY158079 | DSM 15285 |
UNIQEM 215
Tepidibacter formicigenes VP Urios et al. 2004 CiIP 107893 | DV1184, AY245527 | DSM
15518
Genus XXI. Thermobrachium VP
Thermobrachium celere VP (T) Engle et al. 1996 JW/YL-NZ35, X99238, Tmb.celer1 |
DSM 8682
Genus XXII. Thermohalobacter VP
Thermohalobacter berrensis VP (T) Cayol et al. 2000 CTT3 | CNCM 105955, AF113543
Genus XXIII. Tindallia VP
Tindallia magadiensis VP (T) Kevbrin et al. 1999 Z-7934, Y15626 | DSM 10318
32 8
32 9
Th e type strain de signa tion in the sp ecies de scription (111 35) d iffers from the t ype s tra in des ig nation in G en Ban k (III -3 5)
148
Tindallia californiensis VP Pikuta et al. 2003 APO, AF373919 | ATCC BAA-393 | CIP
107910 | DSM 14871
Family II. "Lachnospiraceae"
Genus I. Lachnospira AL
Lachnospira multipara AL (T) Bryant and Small 1956 D32 | ATCC 19207 | DSM 3073
Lachnospira pectinoschiza VP Cornick et al. 1994 150-1, L14675, Lcn.pectin | ATCC
49827
Genus II. Acetitomaculum VP
Acetitomaculum ruminis VP (T) Greening and Leedle 1995 139B, M59083, Acm.rumini
| ATCC 43876, M59083, Acm.rumini | DSM 5522
Genus III. Anaero?lum VP 330

Anaero?lum pentosovorans VP (T) Zellner et al. 1996 Fae, X97852, Af.pentosv | DSM
7168, X97852, Af.pentosv
Anaero?lum agile VP Zellner et al. 1996 DSM 4272, X98011, Af.agile1 | F, X98011,
Af.agile1
Genus IV. Anaerostipes VP
Anaerostipes caccae VP (T) Schwiertz et al. 2002 L1-92, AJ270487 | DSM 14662 |
NCIMB 13811
Genus V. Butyrivibrio AL
Butyrivibrio ?brisolvens AL (T) Bryant and Small 1956 ATCC 19171, U41172, Btv.fbrsl6
| DSM 3071
Butyrivibrio crossotus AL Moore et al. 1976 ATCC 29175 | DSM 2876 | VPI T9-40A
Butyrivibrio hungatei VP Kopecny et al. 2003 JK 615, AJ428553 | ATCC BAA-456 |
DSM 14810
Genus VI. Catenibacterium VP
Catenibacterium mitsuokai VP (T) Kageyama and Benno 2000 RCA14-39 | JCM 10609,
AB030224
Genus VII. Catonella VP
Catonella morbi VP (T) Moore and Moore 1994 ATCC 51271, X87151, Cn.morbi | VPI
D154F-12
Genus VIII. Coprococcus AL
Coprococcus eutactus AL (T) Holdeman and Moore 1974 ATCC 27759, D14148, Cop.eu-
tact | VPI C33-22
Coprococcus catus AL Holdeman and Moore 1974 ATCC 27761 | NCTC 11835 | VPI
C6-61, AB038359
Coprococcus comes AL Holdeman and Moore 1974 ATCC 27758 | VPI C1-38,
AB038359
Genus IX. Johnsonella VP
Johnsonella ignava VP (T) Moore and Moore 1994 ATCC 51276, X87152, Jhn.ignava |
VPI D94B-12
Genus X. Lachnobacterium VP
Lachnobacterium bovis VP (T) Whitford et al. 2001 YZ 87 | ATCC BAA-151, AF298663
| DSM 14045 | LRC 5382
Genus XI. Pseudobutyrivibrio VP

Pseudobutyrivibrio ruminis VP (T) van Gylswyk et al. 1996 A12-1 | DSM 9787, X95893,
Pv.ruminis
Pseudobutyrivibrio xylanivorans VP Kopecny et al. 2003 MZ 5, AJ428548 | ATCC
BAA-455 | DSM 14809
Genus XII. Roseburia VP
Roseburia cecicola VP (T) Stanton and Savage 1983 GM | ATCC 33874, L14676, Rsb.ce-
cic
Roseburia intestinalis VP Duncan et al. 2002 L1-82, AJ312385 | DSM 14610 | NCIMB
13810
Genus XIII. Ruminococcus AL
33 0
Placeme nt of Ana ero?lum is based on Lud wig s recomm enda tio n. Po sitio n w ithin PCA p lot s su gges t that the ge nus m ay s till be misp lac ed .
149
Ruminococcus ?avefaciens AL (T) Sijpesteijn 1948 C94 | ATCC 19208, L76603,

Ruc.? vfa3 | NCDO 2213
Ruminococcus albus AL Hungate 1957 7 | ATCC 27210, L76598, Ruc.albus2 | DSM
20455
Ruminococcus bromii AL Moore et al. 1972 ATCC 27255, L76600, Ruc.bromi2 | VPI
6883
Ruminococcus callidus AL Holdeman and Moore 1974 ATCC 27760, L76596,
Ruc.calli2 | VPI 57-31
Ruminococcus gnavus AL Moore et al. 1976 ATCC 29149, D14136, Ruc.gnavus | ATCC
29149, L76597, Ruc.gnavu2 | ATCC 29149, X94967, Ruc.gnavu3 | VPI C7-9
Ruminococcus hansenii VP (Holdeman and Moore 1974) Ezaki et al. 1994 <- Strep-
tococcus hansenii (basonym) ATCC 27752, D14155, Ruc.hanse2 | ATCC 27752,
M59114, Ruc.hansen | DSM 20583 | VPI C7-24
Ruminococcus hydrogenotrophicus VP Bernalier et al. 1997 S5a33, X95624,
Ruc.hygeno | DSM 10507
Ruminococcus lactaris AL Moore et al. 1976 ATCC 29176, L76602, Ruc.lactar | VPI
X6-29
Ruminococcus luti VP Simmering et al. 2002 BInIX, AJ133124 | CCUG 45635 | DSM
14534
Ruminococcus obeum AL Moore et al. 1976 ATCC 29174, L76601, Ruc.obeum2 | VPI
B3-21
Ruminococcus palustris VP Zhilina et al. 1997 -> Trichococcus palustris Z-7189 | DSM
9172, AJ296179
Ruminococcus pasteurii VP Schink 1985 -> Lactosphaera pasteurii KoTa2, X87150,
Lcs.paster | ATCC 35945, L76599, Lcs.paste2 | DSM 2381
Ruminococcus productus VP (Prvot 1941) Ezaki et al. 1994 <- Peptostreptococcus
productus (basonym) 2396 | ATCC 27340, D14144, Ruc.produc | ATCC 27340,
L76595, Ruc.produ2 | ATCC 27340, X94966, Ruc.produ3 | DSM 2950 | VPI 4299
Ruminococcus schinkii VP Rieu-Lesme et al. 1997 B, X94965, Ruc.schink | DSM 10518
Ruminococcus torques AL Holdeman and Moore 1974 ATCC 27756, D14137,
Ruc.torque | ATCC 27756, L76604, Ruc.torqu2 | VPI B2-51
Genus XIV. Shuttleworthia VP
Shuttleworthia satelles VP (T) Downes et al. 2002 CCUG 45864 | DSM 14600 | VPI
D143K-13, AF399956
Genus XV. Sporobacterium VP
Sporobacterium olearium VP (T) Mechichi et al. 1999 SR1, AF116854 | DSM 12504
Family III. "Peptostreptococcaceae"
Genus I. Peptostreptococcus AL
Peptostreptococcus anaerobius AL (T) (Foubert and Douglas 1948) Douglas 1957 ATCC
27337, D14150, Pps.anaer2 | ATCC 27337, L04168, Pps.anaero | DSM 2949 | VPI
4330
Peptostreptococcus asaccharolyticus VP (Distaso 1912) Ezaki et al. 1983 <- Peptococ-
cus asaccharolyticus (basonym) -> Peptoniphilus asaccharolyticus BAI | ATCC
14963, D14138, Pps.asaclt | DSM 20463 | NCIB 10074 | UW 228
Peptostreptococcus barnesae VP Schiefer-Ullrich and Andreesen 1986 -> Gallicola
barnesae HKB-5 | ATCC 49795 | DSM 3244, AB038361
Peptostreptococcus harei VP Murdoch et al. 1997 -> Peptoniphilus harei SBH 432,
Y07839, Pps.harei1 | CIP 105323 | DSM 10020, Y07839, Pps.harei1
Peptostreptococcus heliotrinreducens VP (Lanigan 1983) Ezaki and Yabuuchi 1986 <-
Peptococcus heliotrinreducens (basonym) -> Slackia heliotrinireducens RHS 1 |
ATCC 29202, AF101241 | DSM 20476 | NCTC 11029
Peptostreptococcus hydrogenalis VP Ezaki et al. 1990 -> Anaerococcus hydrogenalis
ATCC 49630 | DSM 7454 | GIFU 7662, D14140, Pps.hygenl | JCM 7635
150
Peptostreptococcus indolicus VP (Christiansen 1934) Ezaki et al. 1983 <- Peptococ-

cus indolicus (basonym) -> Peptoniphilus indolicus R13 | ATCC 29427, D14147,
Pps.indoli | CCM 5987 | DSM 20464
Peptostreptococcus ivorii VP Murdoch et al. 1997 -> Peptoniphilus ivorii SBH 093,
Y07840, Pps.ivorii | CIP 105325 | DSM 10022, Y07840, Pps.ivorii
Peptostreptococcus lacrimalis VP Li et al. 1992 -> Peptoniphilus lacrimalis DSM
7455 | GIFU 7667, D14141, Pps.lacrim | JCM 8139, D14141, Pps.lacrim
Peptostreptococcus lactolyticus VP Li et al. 1992 -> Anaerococcus lactolyticus ATCC
51172 | DSM 7456 | GIFU 8586, D14154, Pps.laclyt | JCM 8140, D14154, Pps.laclyt
Peptostreptococcus magnus VP (Prevot 1933) Ezaki et al. 1983 <- Peptococcus magnus
(basonym) -> Finegoldia magna 2974 | ATCC 15794, D14149, Pps.magnus | DSM
20470
Peptostreptococcus micros AL (Prevot 1933) Smith 1957 = Peptococcus glycinophilus
(junior heterotypic synonym) -> Micromonas micros 3024A | ATCC 33270,
AY323523, AF542231 | DSM 20468 | VPI 5464
Peptostreptococcus octavius VP Murdoch et al. 1997 -> Anaerococcus octavius Davey
1 | DSM 11663 | NCTC 9810, Y07841, Pps.octavi
Peptostreptococcus parvulus AL (Weinberg et al. 1937) Smith 1957 -> Streptococcus
parvulus ATCC 33793 | DSM 20469 | VPI 0546
Peptostreptococcus prevotii VP (Foubert and Douglas 1948) Ezaki et al. 1983 <- Pepto-
coccus prevotii (basonym) -> Anaerococcus prevotii PC 1 | ATCC 9321, D14139,
Pps.prevot | DSM 20548
Peptostreptococcus productus AL (Prvot 1941) Smith 1957 -> Ruminococcus produc-
tus 2396 | ATCC 27340, D14144, Ruc.produc | ATCC 27340, L76595, Ruc.produ2
| DSM 2950 | VPI 4299
Peptostreptococcus tetradius VP Ezaki et al. 1983 -> Anaerococcus tetradius ATCC

35098 | CCM 3634 | DSM 2951 | GIFU 7672, D14142, Pps.tetrad | JCM 1964
Peptostreptococcus vaginalis VP Li et al. 1992 -> Anaerococcus vaginalis ATCC
51170 | DSM 7457 | GIFU 12669, D14146, Pps.vagnls | JCM 8138, D14146,
Pps.vagnls
Genus II. Anaerococcus VP
Anaerococcus prevotii VP (T) (Foubert and Douglas 1948) Ezaki et al. 2001 331 <- Pep-
tostreptococcus prevotii (basonym) PC 1 | ATCC 9321, D14139, Pps.prevot | DSM
20548
Anaerococcus hydrogenalis VP (Ezaki et al. 1990) Ezaki et al. 2001 <- Peptostrepto-
coccus hydrogenalis (basonym) ATCC 49630 | DSM 7454 | GIFU 7662, D14140,
Pps.hygenl | JCM 7635
Anaerococcus lactolyticus VP (Li et al. 1992) Ezaki et al. 2001 <- Peptostreptococcus
lactolyticus (basonym) ATCC 51172 | DSM 7456 | GIFU 8586, D14154, Pps.laclyt
| JCM 8140, D14154, Pps.laclyt
Anaerococcus octavius VP (Murdoch et al. 1997) Ezaki et al. 2001 332 <- Peptostrepto-
coccus octavius (basonym) Davey 1 | DSM 11663 | NCTC 9810, Y07841, Pps.oc-
tavi
Anaerococcus tetradius VP (Ezaki et al. 1983) Ezaki et al. 2001 <- Peptostreptococcus
tetradius (basonym) ATCC 35098 | CCM 3634 | DSM 2951 | GIFU 7672, D14142,
Pps.tetrad | JCM 1964
Anaerococcus vaginalis VP (Li et al. 1992) Ezaki et al. 2001 <- Peptostreptococcus
vaginalis (basonym) ATCC 51170 | DSM 7457 | GIFU 12669, D14146, Pps.vagnls
| JCM 8138, D14146, Pps.vagnls
Genus III. Filifactor VP

33 1
33 2
151
Filifactor villosus VP (T) (Love et al. 1979) Collins et al. 1994 <- Clostridium villosum
(basonym) ATCC 33388 | DSM 1645, X73452, Flf.villos | NCTC 11220 | VPB 3349
Filifactor alocis VP (Cato et al. 1985) Jalava and Eerola 1999 <- Fusobacterium alocis
(basonym) ATCC 35896, AJ006962 | ATCC 35896, X55406 | VPI D40B-5
Genus IV. Finegoldia VP
Finegoldia magna VP (T) (Prevot 1933) Murdoch and Shah 2000 <- Peptostreptococcus
magnus (basonym) ATCC 15794, D14149 | DSM 20470 | NCTC 11804 | GIFU 7629
Genus V. Fusibacter VP
Fusibacter paucivorans VP (T) Ravot et al. 1999 SEBR 4211, AF050099 | DSM 12116
Genus VI. Gallicola VP
Gallicola barnesae VP (T) (Schiefer-Ullrich and Andreesen 1986) Ezaki et al. 2001 333
<- Peptostreptococcus barnesae (basonym) HKB-5 | ATCC 49795 | DSM 3244,
AB038361
Genus VII. Helcococcus VP 334
Helcococcus kunzii VP (T) Collins et al. 1993 n 22 | ATCC 51366 | DSM 10548 | NBRC
15552 | NCFB 2900, X69837, Hlc.kunzii
Helcococcus ovis VP Collins et al. 1999 S840-96-1 | CCUG 37441, Y16279
Genus VIII. Micromonas VP 335
Micromonas micros VP (T) (Prevot 1933) Murdoch and Shah 2000 <- Peptostreptococcus
micros (basonym) ATCC 33270, AF542231, AY323523 | DSM 20468
Genus IX. Peptoniphilus VP
Peptoniphilus asaccharolyticus VP (T) (Distaso 1912) Ezaki et al. 2001 336 <- Peptostrep-
tococcus asaccharolyticus (basonym) BAI | ATCC 14963, D14138, Pps.asaclt |
DSM 20463 | GIFU 7656 | NCIB 10074 | UW 228
Peptoniphilus harei VP (Murdoch et al. 1997) Ezaki et al. 2001 337 <- Peptostreptococ-
cus harei (basonym) SBH 432, Y07839, Pps.harei1 | CIP 105323 | DSM 10020,
Y07839, Pps.harei1
Peptoniphilus indolicus VP (Christiansen 1934) Ezaki et al. 2001 338 <- Peptostrepto-
coccus indolicus (basonym) R13 | ATCC 29427, D14147, Pps.indoli | CCM 5987 |
DSM 20464
Peptoniphilus ivorii VP (Murdoch et al. 1997) Ezaki et al. 2001 339 <- Peptostreptococ-
cus ivorii (basonym) SBH 093, Y07840, Pps.ivorii | CIP 105325 | DSM 10022,
Y07840, Pps.ivorii
Peptoniphilus lacrimalis VP (Li et al. 1992) Ezaki et al. 2001 <- Peptostreptococcus
lacrimalis (basonym) DSM 7455 | GIFU 7667, D14141, Pps.lacrim | JCM 8139,
D14141, Pps.lacrim
Genus X. Sedimentibacter VP
Sedimentibacter hydroxybenzoicus VP (T) (Zhang et al. 1994) Breitenstein et al. 2002 <-
Clostridium hydroxybenzoicum (basonym) JW/Z-1, L11305, C.hybenzoi | ATCC
51151 | DSM 7310
Sedimentibacter saalensis VP Breitenstein et al. 2002 ZF2, AJ404680 | ATCC BAA-283
| DSM 13558
Genus XI. Sporanaerobacter VP
33 3
33 4
P la ce ment of H elcococcu s is based on L udwigs recom mend ation. This plac eme nt is not con sist ent w ith PCA plots .
33 5
Th e n ame Microm onas is ille gitima te b eca use of precede nce of the fung al gen us Microm onas .
33 6
33 7
33 8
33 9
152
Sporanaerobacter acetigenes VP (T) Hernandez-Eugenio et al. 2002 Lup 33 , AF358114

| CIP 106730 | DSM 13106,
Genus XII. Tissierella VP

Tissierella praeacuta VP (T) (Tissier 1908) Collins and Shah 1986 <- Bacteroides praea-
cutus (basonym) ATCC 25539, X80833, Tss.praea2 | NCTC 11158
Tissierella creatinini VP Farrow et al. 1995 BN11 | DSM 9508
Tissierella creatinophila VP Harms et al. 1998 KRE 4, X80227, Tss.creatn | DSM 6911
Family IV. "Eubacteriaceae"
Genus I. Eubacterium AL
Eubacterium limosum AL (T) (Eggerth 1935) Prevot 1938 ATCC 8486, M59120,
Eub.limosu | DSM 20543 | NCIB 9763
Eubacterium acidaminophilum VP Zindel et al. 1989 a1-2 | ATCC 49065 | DSM 3953,
AF071416, Eub.acidam
Eubacterium aerofaciens AL (Eggerth 1935) Prevot 1938 -> Collinsella aerofaciens
ATCC 25986 | DSM 3979 | JCM 10188, AB011816 | VPI 1003
Eubacterium aggregans VP Mechichi et al. 2000 SR12, AF073898 | DSM 12183,
AF073898
Eubacterium alactolyticum AL (Prevot and Taffanel 1942) Holdeman and Moore 1970
-> Pseudoramibacter alactolyticus DO-4 | ATCC 23263, AB036759 | DSM 3980 |
VPI 0416
Eubacterium angustum VP Beuscher and Andreesen 1985 MK-1 | ATCC 43737, L34612,
Eub.angust | DSM 1989
Eubacterium barkeri VP (Stadtman et al. 1972) Collins et al. 1994 <- Clostridium bark-
eri (basonym) ATCC 25849, M23927, Eub.barker | DSM 1223 | NCIB 10623 |
VKM B-1775 | VPI 5359
Eubacterium biforme AL (Eggerth 1935) Prevot 1938 ATCC 27806, M59230, Eub.bi-
form | DSM 3989 | VPI C17-5
Eubacterium brachy VP Holdeman et al. 1980 ATCC 33089, U13038, Eub.brach2 |
ATCC 33089, Z36272, Eub.brachy | DSM 3990 | VPI D6B-23
Eubacterium budayi AL (Le Blaye and Guggenheim 1914) Holdeman and Moore 1970
ECI | ATCC 25541 | DSM 3981 | JCM 9989, AB018183, AB018183 | VPI 0250
Eubacterium callanderi VP Mountfort et al. 1988 FD | ATCC 49165 | DSM 3662,
X96961, Eub.callan | JCM 10284
Eubacterium cellulosolvens AL (Bryant et al. 1958) Holdeman and Moore 1972 Bryant
B348 | Gylswyk and Hoffmann 6 | ATCC 43171, L34613, Eub.cellul | ATCC 43171,
X71860, Eub.cellu2
Eubacterium combesii AL (Prevot and Laplanche 1947) Holdeman and Moore 1970
A13D | ATCC 25545, L34614, Eub.combes | DSM 20696 | VPI 0136
Eubacterium contortum AL (Prevot 1947) Holdeman et al. 1971 113 VI | ATCC 25540,
L34615, Eub.contor | DSM 3982 | VPI 0119
Eubacterium coprostanoligenes VP Freier et al. 1994 HL | ATCC 5122
Eubacterium cylindroides AL (Rocchi 1908) Holdeman and Moore 1970 ATCC 27803,
L34617, Eub.cylin2 | DSM 3983 | JCM 10261 | VPI 3654
Eubacterium desmolans VP Morris et al. 1986 ATCC 43058, L34618, Eub.desmol
Eubacterium dolichum AL Moore et al. 1976 ATCC 29143, L34682, Eub.dolich | DSM
3991 | VPI C9-20
Eubacterium eligens AL Holdeman and Moore 1974 ATCC 27750, L34420, Eub.eligen
| DSM 3376 | VPI C15-48
Eubacterium exiguum VP Poco et al. 1996 -> Slackia exigua S-7 | ATCC 700122,
AF101240, Slk.exigua
Eubacterium ?ssicatena AL Taylor 1972 AzA | ATCC 33661 | DSM 3598 | NCIB 10446
Eubacterium formicigenerans AL Holdeman and Moore 1974 -> Dorea formicigener-
ans ATCC 27755, L34619, Eub.formic | DSM 3992 | JCM 10342 | VPI C8-13
Eubacterium fossor VP Bailey and Love 1986 -> Atopobium fossor ATCC 43386,
L34620, Eub.fossor | NCTC 11919 | VPB 2127
153
Eubacterium hadrum AL Moore et al. 1976 ATCC 29173 | DSM 3319 | VPI B2-52
Eubacterium hallii AL Holdeman and Moore 1974 ATCC 27751, L34621, Eub.hallii |
DSM 3353 | JCM 7789 | VPI B4-27
Eubacterium in?rmum VP Cheeseman et al. 1996 NCTC 12940 | NCTC 12940, U13039,
Eub.in?r2
Eubacterium lentum AL (Eggerth 1935) Prevot 1938 -> Eggerthella lenta ATCC
25559, AF292375 | DSM 2243 | VPI 0255
Eubacterium minutum VP Poco et al. 1996 = Eubacterium tardum (junior heterotypic
synonym) M-6 | ATCC 700079, AB020885, Eub.minut1 | ATCC 700079,
AJ005636, Eub.minut2
Eubacterium moniliforme AL (Repaci 1910) Holdeman and Moore 1970 ATCC 25546,
L34622, Eub.monili | DSM 3984 | VPI 0142B
Eubacterium multiforme AL (Distaso 1911) Holdeman and Moore 1970 ATCC 25552 |
DSM 20694 | JCM 6484, AB018184 | VPI 4154
Eubacterium nitritogenes AL Prevot 1940 ATCC 25547 | DSM 3985 | JCM 6485,
AB018185 | VPI 0263
Eubacterium nodatum VP Holdeman et al. 1980 ATCC 33099, U13041, Eub.nodat2 |
ATCC 33099, Z36274, Eub.nodatm | DSM 3993 | VPI D6A-5
Eubacterium oxidoreducens VP Krumholz and Bryant 1986 G41 | DSM 3217
Eubacterium plautii VP (Seguin 1928) Hofstad and Aasjord 1982 <- Fusobacterium
plauti (basonym) Pr S1 | ATCC 29863 | DSM 4000 | VPI 0310
Eubacterium plexicaudatum AL Wilkins et al. 1974 VPI 7582
Eubacterium pyruvativorans VP Wallace et al. 2003 I-6, AJ310135 | ATCC BAA-574 |
NCIMB 13911
Eubacterium ramulus AL Moore et al. 1976 ATCC 29099, L34623, Eub.ramulu | DSM
3995
Eubacterium rectale AL (Hauduroy et al. 1937) Prevot 1938 ATCC 33656, L34627,
Eub.rectal | DSM 3377 | VPI 0989
Eubacterium ruminantium AL Bryant 1959 GA 195, AB008552, Eub.rumina | ATCC
17233 | DSM 20704
Eubacterium saburreum AL (Prevot 1966) Holdeman and Moore 1970 ATCC 33271 |
DSM 3986 | VPI 11763
Eubacterium saphenum VP Uematsu et al. 1993 U 164-47 | ATCC 49989, U65987,
Eub.saphen
Eubacterium siraeum AL Moore et al. 1976 ATCC 29066, L34625, Eub.siraeu | DSM
3996 | VPI T9-50-2
Eubacterium suis VP Wegienek and Reddy 1982 -> Actinomyces suis ATCC 33144 |
DSM 20639, S83623, Abl.suis | Soltys 50052
Eubacterium sulci VP (Cato et al. 1985) Jalava and Eerola 1999 <- Fusobacterium sulci
(basonym) ATCC 35585, AJ006963 | VPI D45A-29A
Eubacterium tarantellae AL Udey et al. 1977 ATCC 29255, L34624, Eub.tarant | DSM
3997
Eubacterium tardum VP Cheeseman et al. 1996 = Eubacterium minutum (senior het-
erotypic synonym) NCTC 12941 | NCTC 12941, U13037, Eub.tardum
Eubacterium tenue AL (Bergey et al. 1923) Holdeman and Moore 1970 ATCC 25553,
M59118, Eub.tenue | DSM 20695
Eubacterium timidum VP Holdeman et al. 1980 -> Mogibacterium timidum ATCC
33093, U13042, Eub.timid2 | ATCC 33093, Z36296, Eub.timidm | VPI D1B-22
Eubacterium tortuosum AL (Debono 1912) Prevot 1938 ATCC 25548, L34683, Eub.tor-
tuo | DSM 3987 | VPI 1084B
Eubacterium uniforme VP van Gylswyk and van der Toorn 1985 X3C39 | ATCC 35992,
L34626, Eub.unifor
Eubacterium ventriosum AL (Tissier 1908) Prevot 1938 ATCC 27560, L34421,
Eub.ventri | DSM 3988 | VPI 1013B
154
Eubacterium xylanophilum VP van Gylswyk and van der Toorn 1985 X6C58 | ATCC
35991, L34628, Eub.xylano
Eubacterium yurii subsp. yurii VP Margaret and Krywolap 1986 SM14 | ATCC 43714
Eubacterium yurii subsp. margaretiae VP Margaret and Krywolap 1986 SM65
Eubacterium yurii subsp. schtitka VP Margaret and Krywolap 1986 SMN | ATCC 43716
Genus II. Acetobacterium AL
Acetobacterium woodii AL (T) Balch et al. 1977 WB1 | ATCC 29683 | DSM 1030, X96954,
Atb.woodii | JCM 2381
Acetobacterium bakii VP Kotsyurbenko et al. 1997 Z-4391 | Z-S11 | DSM 8239, X96960,
Atb.bakii1
Acetobacterium carbinolicum VP Eichler and Schink 1985 WoProp 1 | DSM 2925,
X96956, Atb.carbin
Acetobacterium ?metarium VP Kotsyurbenko et al. 1997 Z-4290 | Z-M13 | DSM 8238,
X96959, Atb.?metr
Acetobacterium malicum VP Tanaka and Pfennig 1990 MuME1 | DSM 4132, X96957,
Atb.malicu
Acetobacterium paludosum VP Kotsyurbenko et al. 1997 Z-4092 | Z-B12 | DSM 8237,
X96958, Atb.paludo
Acetobacterium tundrae VP Simankova et al. 2001 340 Z-4493 | DSM 9173, AJ297449
Acetobacterium wieringae VP Braun and Gottschalk 1983 C | DSM 1911, X96955,
Atb.wierin | JCM 2380
Genus III. Anaerovorax VP
Anaerovorax odorimutans VP (T) Matthies et al. 2000 NorPut1, AJ251215 | DSM 5092
Genus IV. Mogibacterium VP
Mogibacterium pumilum VP (T) Nakazawa et al. 2000 D2-18 | ATCC 700696, AB021701
Mogibacterium diversum VP Nakazawa et al. 2002 HM-7 | ATCC 700923, AB037874
| JCM 11205
Mogibacterium neglectum VP Nakazawa et al. 2002 P9a-h | ATCC 700924, AB037875

| JCM 11204
Mogibacterium timidum VP (Holdeman et al. 1980) Nakazawa et al. 2000 <- Eubac-
terium timidum (basonym) ATCC 33093, U13042 | ATCC 33093, Z36296 | VPI
D1B-22
Mogibacterium vescum VP Nakazawa et al. 2000 D5-2 | ATCC 700697, AB021702
Genus V. Pseudoramibacter VP
Pseudoramibacter alactolyticus VP (T) (Prevot and Taffanel 1942) Willems and Collins
1996 <- Eubacterium alactolyticum (basonym) DO-4 | ATCC 23263, AB036759 |
DSM 3980 | VPI 0416
Family V. Peptococcaceae AL 341
Genus I. Peptococcus AL (T)
Peptococcus niger AL (T) (Hall 1930) Kluyver and van Niel 1936 ATCC 27731 | DSM
20475, X55797 | VPI 7953
Peptococcus asaccharolyticus AL (Distaso 1912) Douglas 1957 -> Peptostreptococcus
asaccharolyticus UW 228 | ATCC 14963, D14138, Pps.asaclt | DSM 20463 | NCIB
10074
Peptococcus glycinophilus AL (Cardon and Barker 1946) Douglas 1957 = Peptostrep-
tococcus micros (senior heterotypic synonym) ATCC 23195
Peptococcus heliotrinreducens VP Lanigan 1983 -> Peptostreptococcus heliotrinire-
ducens RHS1 | ATCC 29202 | DSM 20476 | NCTC 11029
Peptococcus indolicus AL (Christiansen 1934) Sorensen 1975 -> Peptostreptococcus
indolicus R13 | ATCC 29427, D14147, Pps.indoli | CCM 5987 | DSM 20464
34 0
34 1
S tr mple and Tin dall su ggest tha t the orig ina l placemen t of Ana eroarc us, A nae ro sinus , An aerov ib rio, Cen tip eda, De ndros porob act er, Mit-
sukella, Prop ion ispira, an d S uccinisp ira were m isplaced with in the Pe ptoc oc ca ce ae. Th es e g enera hav e been m ove d t o th e Ac ido minoc o-
caceae on the ba se d o f com bin ed se quen ce an d lip id dat a.
155
Peptococcus magnus AL (Prevot 1933) Holdemann and Moore 1972 -> Peptostrepto-
coccus magnus ATCC 15794, D14149, Pps.magnus | DSM 20470
Peptococcus prevotii AL (Foubert and Douglas 1948) Douglas 1957 -> Peptostrepto-
coccus prevotii PC 1 | ATCC 9321, D14139, Pps.prevot | DSM 20548
Peptococcus saccharolyticus AL (Foubert and Douglas 1948) Douglas 1957 -> Staphy-
lococcus saccharolyticus S1 | ATCC 14953, L37602, Stp.sacly2 | DSM 20359
Genus II. Carboxydothermus VP
Carboxydothermus hydrogenoformans VP (T) Svetlichny et al. 1991 Z-2901 | DSM 6008
Genus III. Dehalobacter VP
Dehalobacter restrictus VP (T) Holliger et al. 1998 PER-K23, U84497, U84497 | DSM
9455
Genus IV. Desul?tobacterium VP
Desul?tobacterium dehalogenans VP (T) Utkin et al. 1994 JW/IU-DC1, L28946, D? .de-
halo | ATCC 51507 | DSM 9161
Desul?tobacterium chlororespirans VP Sanford et al. 2001 342 Co23, U68528 | ATCC
700715 | DSM 11544
Desul?tobacterium frappieri VP Bouchard et al. 1996 PCP-1, U40078, D?.frappi
Desul?tobacterium hafniense VP Christiansen and Ahring 1996 DCB-2, X94975,
D? .hafnie | DSMZ 10664
Desul?tobacterium metallireducens VP Finneran et al. 2002 343 853-15A | ATCC BAA-
636, AF297871
Genus V. Desulfonispora VP
Desulfonispora thiosulfatigenes VP (T) Denger et al. 1999 GKNTAU, Y18214 | ATCC
700533 | DSM 11270
Genus VI. Desulfosporosinus VP
Desulfosporosinus orientis VP (T) (Campbell and Postgate 1965) Stackebrandt et al. 1997
<- Desulfotomaculum orientis (basonym) Singapore I, M34417, Dfm.orient |
ATCC 19365 | DSM 765, Y11570, Ds.orienti | NCIB 8382, M34417, Dfm.orient |
VKM B-1628
Desulfosporosinus meridiei VP Robertson et al. 2001 S10, AF076527 | DSM 13257 |
NCIMB 13706
Genus VII. Desulfotomaculum AL
Desulfotomaculum nigri?cans AL (T) (Werkman and Weaver 1927) Campbell and Post-
gate 1965 Delft 74 | ATCC 19858 | ATCC 19998 | DSM 574 | NBRC 13698 | NCIB
8395, X62176, Dfm.nigrif
Desulfotomaculum acetoxidans AL Widdel and Pfennig 1977 5575 | ATCC 49208 | DSM
771, Y11566, Dfm.acetox | VKM B-1644
Desulfotomaculum aeronauticum VP Hagenauer et al. 1997 9 | DSM 10349, X98407,
Dfm.aerona
Desulfotomaculum alkaliphilum VP Pikuta et al. 2000 S1 | DSM 12257, AF097024
Desulfotomaculum antarctica VP (ex Iizuka et al. 1969) Campbell and Singleton 1988
IAM 64
Desulfotomaculum auripigmentum VP Newman et al. 2000 OREX-4, U85624 | DSM
13351, AJ493051
Desulfotomaculum australicum VP Love et al. 1993 AB33, M96665, Dfm.austra | ACM
3917
Desulfotomaculum geothermicum VP Daumas et al. 1990 BSD | ATCC 49053 | DSM
3669, X80789, Dfm.geothr | DSM 3669, Y11567, Dfm.geoth2
Desulfotomaculum gibsoniae VP Kuever et al. 1999 Groll, Y11576 | DSM 7213
Desulfotomaculum guttoideum VP Gogotova and Vainstein 1986 50 | DSM 4024,
Y11568, Dfm.guttoi | VKM B-1591 | VKM B-T591
34 2
34 3
156
Desulfotomaculum halophilum VP Tardy-Jacquenod et al. 1998 DSM 11559 | SEBR

3139, U88891, Dfm.haloph
Desulfotomaculum kuznetsovii VP Nazina et al. 1990 17 | DSM 6115, Y11569,
Dfm.kuznet | VKM B-1805
Desulfotomaculum luciae VP Liu et al. 1997 SLT, AF069293, Dfm.luciae | DSM 12396
| SMCC W644
Desulfotomaculum orientis AL Campbell and Postgate 1965 -> Desulfosporosinus ori-

entis Singapore I, M34417, Dfm.orient | ATCC 19365 | DSM 765, Y11570, Ds.ori-
enti | NCIB 8382, M34417, Dfm.orient | VKM B-1628
Desulfotomaculum putei VP Liu et al. 1997 TH-11 | DSM 12395 | SMCC W459,
AF053929, Dfm.putei1
Desulfotomaculum ruminis AL Campbell and Postgate 1965 DL | ATCC 23193 | DSM
2154, Y11572, Dfm.rumin3 | NCIB 8452, M34418, Dfm.rumin2
Desulfotomaculum sapomandens VP Cord-Ruwisch and Garcia 1990 Pato | DSM 3223,
AF168365
Desulfotomaculum thermoacetoxidans VP Min and Zinder 1995 CAMZ | DSM 5813,
Y11573, Dfm.thacet
Desulfotomaculum thermobenzoicum subsp. thermobenzoicum VP Tasaki et al. 1991
TSB | ATCC 49756 | DSM 6193, Y11574, Dfm.thben2 344
Desulfotomaculum thermobenzoicum subsp. thermosyntrophicum VP Plugge et al. 2002
345
TPO | DSM 14055, AY007190 346
Desulfotomaculum thermocisternum VP Nilsen et al. 1996 ST90, U33455, Dfm.thcist |
DSM 10259
Desulfotomaculum thermosapovorans VP Fardeau et al. 1995 MLF, Z26315,
Dfm.thsapv | DSM 6562, Y11575, Dfm.thsap2
Genus VIII. Pelotomaculum VP
Pelotomaculum thermopropionicum VP (T) Imachi et al. 2002 SI, AB035723 | DSM
13744 | JCM 10971
Genus IX. Syntrophobotulus VP
Syntrophobotulus glycolicus VP (T) Friedrich et al. 1996 FlGlyR | DSM 8271
Genus X. Thermoterrabacterium VP 347
Thermoterrabacterium ferrireducens VP (T) Slobodkin et al. 1997 JW/AS-Y7, U76363
| DSM 11255
Family VI. "Heliobacteriaceae"

Genus I. Heliobacterium VP
Heliobacterium chlorum VP (T) Gest and Favringer 1985 Gest/Favinger | ATCC 35205 |
ATCC 35205, M11212, Hel.chlor2 | DSM 3682
Heliobacterium gestii VP Ormerod et al. 1996 Chainat | ATCC 43375 | ATCC 43375,
L36198, Hel.gestii | ATCC 43375, U14558, Hel.gesti2 | DSM 11169
Heliobacterium modesticaldum VP Kimble et al. 1996 Ice 1, L36200, Hel.spIce1 | Ice 1,
U14559, Hel.modcal | ATCC 51547 | DSM 9504
Heliobacterium sul?dophilum VP Bryantseva et al. 2001 348 BR4, AF249678 | UNIQEM
113
Heliobacterium undosum VP Bryantseva et al. 2001 349 BG29, AF249679 | DSM 13378
Genus II. Heliobacillus VP
Heliobacillus mobilis VP (T) Beer-Romero and Guest 1998 6 | ATCC 43427 | DSM 6151
34 4
34 5
34 6
34 7
Thermot erra bacteriu m may be misplaced.
34 8
34 9
157
Genus III. Heliophilum VP

Heliophilum fasciatum VP (T) Ormerod et al. 1996 Tanzania, L36197, Hph.fascia | ATCC
51790 | DSM 11170
Genus IV. Heliorestis VP
Heliorestis daurensis VP (T) Bryantseva et al. 2000 BT-H1, AF079102 | ATCC 700597
Heliorestis baculata VP Bryantseva et al. 2001 350 OS-H1, AF249680 | DSM 13446
Family VII. "Acidaminococcaceae" 351 352 353
Genus I. Acidaminococcus AL
Acidaminococcus fermentans AL (T) Rogosa 1969 emend. Cook et al. 1994 VR4 | ATCC
25085, X65935, Aam.fermen | DSM 20731, X78017, Aam.ferme3
Genus II. Acetonema VP
Acetonema longum VP (T) Kane and Breznak 1992 APO-1, M61919, Ace.longum | ATCC
51454 | DSM 6540
Genus III. Allisonella VP
Allisonella histaminiformans VP (T) Garner et al. 2003 MR2, AF548373 | ATCC BAA-
610 | DSM 15230
Genus IV. Anaeroarcus VP
Anaeroarcus burkinensis VP (T) (Ouattara et al. 1992) Strompl et al. 1999 <- Anaerovib-
rio burkinabensis (basonym) B4B0 | DSM 6283, AJ010961 | ATCC 51455
Genus V. Anaeroglobus VP
Anaeroglobus geminatus VP Carlier et al. 2002 AIP 313.00, AF338413 | CCUG 44773
| CIP 106856
Genus VI. Anaeromusa VP

Anaeromusa acidaminophila VP (T) (ex Nanninga et al. 1987) Baena et al. 1999 DSM
3853, AF071415
Genus VII. Anaerosinus VP
Anaerosinus glycerini VP (T) (Schauder and Schink 1996) Strmpl et al. 1999 <-
Anaerovibrio glycerini (basonym) LGS 4 | ATCC 51177 | DSM 5192, AJ010960
Genus VIII. Anaerovibrio AL
Anaerovibrio lipolyticus AL (T) Hungate 1966 5S | ATCC 33276 | DSM 3074, AJ010959 |
VPI 7553
Anaerovibrio burkinabensis VP Ouattara et al. 1992 -> Anaeroarcus burkinensis B4B0
| ATCC 51455 | DSM 6283, AJ010961
Anaerovibrio glycerini VP Schauder and Schink 1996 -> Anaerosinus glycerini LGS 4
| ATCC 51177 | DSM 5192, AJ010960
Genus IX. Centipeda VP

Centipeda periodontii VP (T) Lai et al. 1983 LL2383 | ATCC 35019 | DSM 2778,
AJ010963
Genus X. Dendrosporobacter VP
Dendrosporobacter quercicolus VP (T) (Stankewich et al. 1971) Strmpl et al. 2000 <-
Clostridium quercicolum (basonym) ATCC 25974, M59110 | DSM 1736
Genus XI. Dialister VP
Dialister pneumosintes VP (T) (Olitsky and Gates 1921) Moore and Moore 1994 <-
Bacteroides pneumosintes (basonym) ATCC 33048, X82500, Di.psintes | CCUG
21025 | DSM 11619 | VPI 9415
Dialister invisus VP Downes et al. 2003 CCUG 47026 | DSM 15470 | E7.25, AY162469
35 0
35 1
The f amily Acid aminococca cea e was crea ted at t he sugge stion of L udwig and Sc hliefe r to con tain the G ram- neg ative c ell wall c ont ain ing
low G + C G ram p ositives. The group fo rm s a well de?ne d linea ge off th e ma in lin e of de cen t of th e Pe ptoc oc ca cea e. A cidam ino co cc us was
sele cte d as the type ge nus o n the basis of prio rity.
35 2
The fam ily Veillonaceae Rog osa ha s priority over Acid aminoc oc ca cea e. An eme ndat ion of the family, an d po ss ib ly a sp lit, may be
warrant ed.
35 3
S tr mple and Tin dall su ggest tha t the orig ina l placemen t of Ana eroarc us, A nae ro sinus , An aerov ib rio, Cen tip eda, De ndros porob act er, Mit-
sukella, Prop ion ispira, an d S uccinisp ira were m isplaced with in the Pe ptoc oc ca ce ae. Th es e g enera hav e been m ove d t o th e Ac ido minoc o-
caceae on the ba se d o f com bin ed se quen ce an d lip id dat a.
158
Genus XII. Megasphaera AL

Megasphaera elsdenii AL (T) (Gutierrez et al. 1959) Rogosa 1971 LC1 | ATCC 25940,
U95027 | DSM 20460 | NCIB 8927
Megasphaera cerevisiae VP Engelmann and Weiss 1986 PAT 1 | ATCC 43254 | DSM
20462
Megasphaera micronuciformis VP Marchandin et al. 2003 AIP 412.00, AF473834 |
CCUG 45952 | CIP 107280
Genus XIII. Mitsuokella VP
Mitsuokella multacida VP (T) (Mitsuoka et al. 1974) Shah and Collins 1983 <- Bac-
teroides multiacidus (basonym) A 405-1 | ATCC 27723 | DSM 20544 | NCTC
10934, X81878, Msk.mulcid
Mitsuokella dentalis VP Haapasalo et al. 1986 -> Prevotella dentalis ES2772 | ATCC
49559 | DSM 3688, X81876, Prv.denti3
Mitsuokella jalaludinii VP Lan et al. 2002 M 9 | ATCC BAA-307, AF479674 | DSM
13811
Genus XIV. Papillibacter VP
Papillibacter cinnamivorans VP (T) Defnoun et al. 2000 CIN1, AF167711 | DSM 12816
| ATCC 700879
Genus XV. Pectinatus AL

Pectinatus cerevisiiphilus AL (T) Lee et al. 1978 emend. Schleifer et al. 1990 ATCC
29359, AF373026 | CCC B-1022 | DSM 20467
Pectinatus frisingensis VP Schleifer et al. 1990 V1 | ATCC 33332, AF373027 | CCM
6217 | DSM 6306 | VTT-E-79100
Genus XVI. Phascolarctobacterium VP
Phascolarctobacterium faecium VP (T) Del Dot et al. 1994 ACM 3679, X72865,
Pha.faeci2
Genus XVII. Propionispira VP
Propionispira arboris VP (T) Schink et al. 1983 12B4, Y18190 | ATCC 33732 | DSM 2179
Genus XVIII. Propionispora VP
Propionispora vibrioides VP (T) Biebl et al. 2001 354 FKBS1, AJ279802 | DSM 13305
Genus XIX. Quinella VP
Quinella ovalis VP (T) Krumholz et al. 1993 no axenic culture, M62701, Qui.ovalis
Genus XX. Schwartzia VP
Schwartzia succinivorans VP (T) van Gylswyk et al. 1997 S1-1 | DSM 10502, Y09434,
Scw.succin
Genus XXI. Selenomonas AL
Selenomonas sputigena AL (T) (Flgge 1886) Boskamp 1922 ATCC 35185, AF287793,
AF373023 | DSM 20758 | VPI 10068 | VPI D19B-28
Selenomonas acidaminovorans VP Guangsheng et al. 1997 -> Thermanaerovibrio aci-
daminovorans Su883 | ATCC 49978 | DSM 6589, AF071414
Selenomonas artemidis VP Moore et al. 1987 ATCC 43528 | VPI D22B-14
Selenomonas dianae VP Moore et al. 1987 ATCC 43527, AF287801 | VPI D19A-11
Selenomonas ?ueggei VP Moore et al. 1987 ATCC 43531, AF287803 | VPI E4M-28B
Selenomonas infelix VP Moore et al. 1987 ATCC 43532, AF287802 | VPI D75B-30
Selenomonas lacticifex VP Schleifer et al. 1990 VB4b | ATCC 49690, AF373024 | DSM
20757
Selenomonas lipolytica VP Dighe et al. 1998 CF1B | MCMB 505
Selenomonas noxia VP Moore et al. 1987 ATCC 43541, AF287799 | VPI D9B-5
Selenomonas ruminantium subsp. ruminantium AL Bryant 1974 GA-192, M62702,
Sln.rum192 | ATCC 12561 | DSM 2150
Selenomonas ruminantium subsp. lactilytica AL Bryant 1956 PC 18 | ATCC 19205 | DSM
2872 | JCM 6582, AB003379, Sln.rumin4
Genus XXII. Sporomusa VP
35 4
159
Sporomusa sphaeroides VP (T) Mller et al. 1985 E | ATCC 35900 | DSM 2875, AJ279801
Sporomusa acidovorans VP Ollivier et al. 1990 Mol | ATCC 49682 | DSM 3132,
AJ279798
Sporomusa malonica VP Dehning et al. 1990 WoG12 | ATCC 49684 | DSM 5090,
AJ279799
Sporomusa ovata VP Mller et al. 1985 H1 | ATCC 35899 | DSM 2662, AJ279800
Sporomusa paucivorans VP Hermann et al. 1987 X | DSM 3697
Sporomusa silvacetica VP Kuhner et al. 1997 DG-1, Y09976, Spm.silvac | DSMZ 10669
Sporomusa termitida VP Breznak et al. 1990 JSN-2, M61920, Spm.termit | ATCC 49683
| DSM 4440
Genus XXIII. Succiniclasticum VP

Succiniclasticum ruminis VP (T) van Gylswyk 1995 SE 10, X81137, Scl.rumini | DSM
9236
Genus XXIV. Succinispira VP
Succinispira mobilis VP (T) Janssen and OFarrell 1999 19gly1, AJ006980 | DSM 6222
Genus XXV. Veillonella AL
Veillonella parvula subsp. parvula AL (T) (Veillon and Zuber 1898) Prevot 1933 = Veil-
lonella alcalescens subsp. alcalescens (junior heterotypic synonym) Te3 | ATCC
10790 | DSM 2008, X84005, Vln.parvul
Veillonella parvula subsp. atypica AL Rogosa 1965 -> Veillonella atypica ATCC 17744
| DSM 20739, X84007, Vln.atypic
Veillonella parvula subsp. rodentium AL Rogosa 1965 -> Veillonella rodentium ATCC
17743 | DSM 20737
Veillonella alcalescens subsp. alcalescens AL Prevot 1933 = Veillonella parvula (senior
heterotypic synonym) B13-0-1 D | ATCC 17745
Veillonella alcalescens subsp. criceti AL Rogosa 1965 -> Veillonella criceti ATCC
17747, AF186072 | DSM 20734
Veillonella alcalescens subsp. dispar AL Rogosa 1965 -> Veillonella dispar ATCC
17748 | DSM 20735, X84006, Vln.dispar
Veillonella alcalescens subsp. ratti AL Rogosa 1965 -> Veillonella ratti ATCC 17746,
AF186071 | DSM 20736
Veillonella atypica VP (Rogosa 1965) Mays et al. 1982 <- Veillonella parvula subsp.
atypica (basonym) KON | ATCC 17744 | DSM 20739, X84007, Vln.atypic
Veillonella caviae VP Mays et al. 1982 Rogosa PV1 | ATCC 33540 | DSM 20738,
AY355140 | VPI 12140
Veillonella criceti VP (Rogosa 1965) Mays et al. 1982 <- Veillonella alcalescens subsp.
criceti (basonym) HV-1 | Serogroup I | ATCC 17747, AF186072 | DSM 20734
Veillonella dispar VP (Rogosa 1965) Mays et al. 1982 <- Veillonella alcalescens subsp.
dispar (basonym) ERN | Serogroup VII | ATCC 17748 | DSM 20735, X84006,
Vln.dispar
Veillonella ratti VP (Rogosa 1965) Mays et al. 1982 <- Veillonella alcalescens subsp.
ratti (basonym) RV-12x | ATCC 17746 | DSM 20736, AY355138
Veillonella rodentium VP (Rogosa 1965) Mays et al. 1982 <- Veillonella parvula subsp.
rodentium (basonym) HV 19 | ATCC 17743 | DSM 20737
Genus XXVI. Zymophilus VP
Zymophilus raf?nosivorans VP (T) Schleifer et al. 1990 SH2 | ATCC 49691 | DSM 20765
Zymophilus paucivorans VP Schleifer et al. 1990 AA1 | ATCC 49689 | DSM 20756,
AF373025
Family VIII. Syntrophomonadaceae VP 355
Genus I. Syntrophomonas VP (T)
Syntrophomonas wolfei subsp. wolfei VP (T) McInerney et al. 1982 emend. Lorowitz et
al. 1989 G G311 | DSM 2245 | OCM 41
Syntrophomonas wolfei subsp. saponavida VP Lorowitz et al. 1989 SD2 | DSM 4212
35 5
Hu genh oltz not es th at the S yntroph omon adacea e is polyp hyletic a nd repres ents a ph ylum-leve l line age d is tin ct from the Firm ic utes . Tha t
line age sho uld c onsist o f Syntrop hom onas, A minob act erium , A min omo nas , A naerob ac ulu m an d De thiosu lfo vibrio
160
Syntrophomonas sapovorans VP Roy et al. 1987 OM | DSM 3441, AF022249

Genus II. Acetogenium VP 356
Acetogenium kivui VP (T) Leigh and Wolfe 1983 -> Thermoanaerobacter kivui LKT-1
| ATCC 33488 | DSM 2030, L09160, Tab.kivui
Genus III. Aminobacterium VP

Aminobacterium colombiense VP (T) Baena et al. 1999 ALA-1, AF069287 | DSM 12261
Aminobacterium mobile VP Baena et al. 2000 ILE-3, AF073521 | DSM 12262
Genus IV. Aminomonas VP
Aminomonas paucivorans VP (T) Baena et al. 1999 GLU-3, AF072581 | DSM 12260
Genus V. Anaerobaculum VP
Anaerobaculum thermoterrenum VP (T) Rees et al. 1997 RWcit2, U50711, Anr.thmter |
ACM 5076
Anaerobaculum mobile VP Menes and Mux 2002 NGA, AJ243189 | ATCC BAA-54 |
DSM 13181
Genus VI. Anaerobranca VP 357
Anaerobranca horikoshii VP (T) Engle et al. 1995 JW/YL-138, U21809, Abr.horiko |
DSM 9786
Anaerobranca gottschalkii VP Prowe and Antranikian 2001 358 LBS3, AF203703 | DSM
13577
Genus VII. Caldicellulosiruptor VP
Caldicellulosiruptor kristjanssonii VP Bredholt et al. 1999 I77R1B, AJ004811 | DSM
12137
Caldicellulosiruptor lactoaceticus VP Mladenovska et al. 1997 6A, X82842, Ccs.lactoa
| DSM 9545
Caldicellulosiruptor owensensis VP Huang et al. 1998 OL, U80596, Ccs.owense | ATCC

700167
Caldicellulosiruptor saccharolyticus VP (T) Rainey et al. 1995 Tp8T 6331, L09178,
Ccs.saccha | ATCC 43494 | DSM 8903
Genus VIII. Carboxydocella VP
Carboxydocella thermautotrophica VP (T) Sokolova et al. 2002 41, AY061974 | DSM
12326 | VKM B-2282
Genus IX. Dethiosulfovibrio VP
Dethiosulfovibrio peptidovorans VP (T) Magot et al. 1997 SEBR 4207, U52817 | DSM
11002
Dethiosulfovibrio acidaminovorans VP Surkov et al. 2001 359 SR 15, AY005466 | DSM
12590
Dethiosulfovibrio marinus VP Surkov et al. 2001 360 WS100, AF234542 361 | DSM 12537
Dethiosulfovibrio russensis VP Surkov et al. 2001 362 SR 12 | DSM 12538 363
Genus X. Pelospora VP
Pelospora glutarica VP (T) Matthies et al. 2000 WoG13, AJ251214 | DSM 6652
Genus XI. Syntrophospora VP
Syntrophospora bryantii VP (T) (Stieb and Schink 1985) Zhao et al. 1990 <- Clostridium
bryantii (basonym) CuCal | DSM 3014 | DSM 3014A,B
Genus XII. Syntrophothermus VP
35 6
Hugen holtz in dicate s that Acetog enium sh ould b e m ove d to the Therno anae ro bac teria ce ae
35 7
Th e placemen t of A na erobranca is questionab le. It is, howev er, with in the s am e region as Th ermoa naerob act erium in the ARB tree.
35 8
35 9
36 0
36 1
G en bank a ccession num ber repo rte d incorre ctly in IJSE M. S train des ignation reported in co rrec tly in G en Ba nk.
36 2
36 3
161
Syntrophothermus lipocalidus VP (T) Sekiguchi et al. 2000 TGB-C1 | DSM 12680,

AB021305
Genus XIII. Thermaerobacter VP
Thermaerobacter marianensis VP (T) Takai et al. 1999 7p75a, AB011495, Tar.marian |
JCM 10246
Thermaerobacter nagasakiensis VP Nunoura et al. 2002 Tsla, AB061441 | JCM 11223 |
DSM 14512
Thermaerobacter subterraneus VP Spanevello et al. 2002 C21, AF343566 | ATCC
BAA-137 | DSM 13965
Genus XIV. Thermanaerovibrio VP 364
Thermanaerovibrio acidaminovorans VP (T) (Guangsheng et al. 1997) Baena et al. 1999
<- Selenomonas acidaminovorans (basonym) DSM 6589, AF071414
Thermanaerovibrio velox VP Zavarzina et al. 2000 Z-9701, AF161069 | DSM 12556
Genus XV. Thermohydrogenium VP
Thermohydrogenium kirishiense VP (T) Zacharova et al. 1996 ZE-7 | DSM 11055
Genus XVI. Thermosyntropha VP
Thermosyntropha lipolytica VP (T) Svetlitshnyi et al. 1996 JW/VS-265, X99980, Tsy.li-
plyt | DSM 11003
Order II. "Thermoanaerobacteriales" 365
Family I. "Thermoanaerobacteriaceae"
Genus I. Thermoanaerobacterium VP
Thermoanaerobacterium thermosulfurigenes VP (T) (Schink and Zeikus 1983) Lee et al.
1993 <- Clostridium thermosulfurigenes (basonym) 4B, X58351, Tbm.thsul2 |
ATCC 33743, L09171, Tbm.thsulf | DSM 2229
Thermoanaerobacterium aotearoense VP Liu et al. 1996 JW/SL-NZ613, X93359,
Tbm.aotear | DSM 10170
Thermoanaerobacterium polysaccharolyticum VP Cann et al. 2001 KMTHCJ, U40229
| ATCC BAA-17 | DSM 13641
Thermoanaerobacterium saccharolyticum VP Lee et al. 1993 B6A-RI | ATCC 49915 |

DSM 7060, L09169, Tbm.saccha
Thermoanaerobacterium thermosaccharolyticum VP (McClung 1935) Collins et al.
1994 <- Clostridium thermosaccharolyticum (basonym) NCA 3814 | ATCC 7956,
M59119, Tbm.thsacc | DSM 571 | NCIB 9385
Thermoanaerobacterium xylanolyticum VP Lee et al. 1993 LX-11 | ATCC 49914 | DSM
7097, L09172, Tbm.xylano
Thermoanaerobacterium zeae VP Cann et al. 2001 mel2, U75993 | ATCC BAA-16 |
DSM 13642
Genus II. Ammonifex VP
Ammonifex degensii VP (T) Huber and Stetter 1996 KC4, U34975, Am.degensi | DSM
10501
Genus III. Caldanaerobacter VP
Caldanaerobacter subterraneus subsp. subterraneus VP (T) Fardeau et al. 2004 <- Ther-
moanaerobacter subterraneus (basonym) OCA1, AY216596 | SL9, AY216597,
AF195797
Caldanaerobacter subterraneus subsp. paci?cus VP ( Sokolova et al. 2001) Fardeau et al.
2004 <- Carboxydibrachium paci?cum (basonym) JM | DSM 12653, AF174484
Caldanaerobacter subterraneus subsp. tengcongensis VP Fardeau et al. 2004 <-
Thermoanaerobacter tengcongensis (basonym) MB4 | DSM 15242 | JCM 11007,
AF209708
Caldanaerobacter subterraneus subsp. yonseiensis VP Fardeau et al. 2004 <- Ther-
moanaerobacter yonseiensis (basonym) KB-1 | DSM 13777, AF212925 | KFCC
11116
36 4
The current placeme nt of Th erman aerovibrio is qu estion able.
36 5
Th e Th ermoan aeroba cte riales was create d to conta in the dee per b ra nc hin g grou ps tha t we re origin ally in clude d in t he P ept oco cc ac eae
an d S ynt ro phom onad aceae. Hugen holtz ind icates th at th is fam ily probab ly repres ent s a s eparat e ph ylum-leve l lin eage , dist inc t from the Fir-
micutes.
162
Genus IV. Carboxydibrachium VP

Carboxydibrachium paci?cum VP (T) Sokolova et al. 2001 366 -> Caldanaerobacter sub-
terraneus subsp. paci?cus JM, AF174484 | DSM 12653
Genus V. Coprothermobacter VP 367
Coprothermobacter proteolyticus VP (T) (Ollivier et al. 1985) Rainey and Stackebrandt
1993 <- Thermobacteroides proteolyticus (basonym) BT | ATCC 35245, X69335,
Ctm.prtlyt | DSM 5265
Coprothermobacter platensis VP Etchebehere et al. 1998 3R, Y08935, Ctm.platen |
DSM 11748
Genus VI. Gelria VP
Gelria glutamica VP (T) Plugge et al. 2002 TGO, AF321086 | ATCC BAA-262 | DSM
14054
Genus VII. Moorella VP 368
Moorella thermoacetica VP (T) (Fontaine et al. 1942) Collins et al. 1994 <- Clostridium
thermaceticum (basonym) ATCC 35608 | DSM 521
Moorella glycerini VP Slobodkin et al. 1997 JW/AS-Y6, U82327, Mrl.glycer | ATCC
700316 | DSM 11254
Moorella thermoautotrophica VP (Wiegel et al. 1982) Collins et al. 1994 <- Clostridium
thermautotrophicum (basonym) JW 701/3, X58354, Mrl.thaut5 | ATCC 33924 |
DSM 1974, L09168, Mrl.thaut3 | DSM 1974, X77849, Mrl.thauto
Genus VIII. Sporotomaculum VP
Sporotomaculum hydroxybenzoicum VP (T) Brauman et al. 1998 BT, Y14845, Smc.hy-
benz | DSM 5475, Y14845, Smc.hybenz
Sporotomaculum syntrophicum VP Qiu et al. 2003 FB, AB076610 | DSM 14795 | JCM
11495
Genus IX. Thermacetogenium VP
Thermacetogenium phaeum VP (T) Hattori et al. 2000 PB, AB020336 | DSM 12270
Genus X. Thermanaeromonas VP
Thermanaeromonas toyohensis VP (T) Mori et al. 2002 ToBE, AB062280 | DSM 14490
| JCM 11376
Genus XI. Thermoanaerobacter VP 369

Thermoanaerobacter ethanolicus VP (T) Wiegel and Ljungdahl 1982 JW 200, X58347,
Tab.ethano | ATCC 31550, L09162, Tab.ethan1 | DSM 2246 | VKM B-1835
Thermoanaerobacter acetoethylicus VP (Ben-Bassat and Zeikus 1983) Rainey and
Stackebrandt 1993 <- Thermobacteroides acetoethylicus (basonym) HTB2 |
HTB2/W, X58348, Tab.aceet2 | ATCC 33265, L09163, Tab.aceeth | ATCC 33265,
X69336, Tab.aceet3 | DSM 2359
Thermoanaerobacter brockii subsp. brockii VP (Zeikus et al. 1983) Lee et al. 1993
emend. Cayol et al. 1995 <- Thermoanaerobium brockii (basonym) HTD4,
X58349, Tab.brock2 | ATCC 33075 | DSM 1457, L09165, Tab.brocki
Thermoanaerobacter brockii subsp. ?nnii VP (Schmid et al. 1986) Cayol et al. 1995 <-
Thermoanaerobacter ?nnii (basonym) AKO-1 | DSM 3389, L09166, Tab.brock4
Thermoanaerobacter brockii subsp. lactiethylicus VP Cayol et al. 1995 DSM 9801 |
SEBR 5268, U14330, Tab.brock3
Thermoanaerobacter ?nnii VP Schmid et al. 1986 -> Thermoanaerobacter brockii
subsp. ?nnii AKO-1 | DSM 3389, L09166, Tab.brock4
Thermoanaerobacter italicus VP Kozianowski et al. 1998 Ab9 | DSM 9252, AJ250846
Thermoanaerobacter kivui VP (Leigh and Wolfe 1983) Collins et al. 1994 <- Acetoge-
nium kivui (basonym) LKT-1 | ATCC 33488 | DSM 2030, L09160, Tab.kivui
36 6
36 7
Hugen holtz in dicate s that Cop ro thermo bacter is a distinct ph ylum-leve l lineag e.
36 8
Ludwig ind icates that the posit ion of Mo orella is un certa in. Howev er, plac eme nt w ithin the Thermo anae ro bac teria les s ee ms reas ona ble
un til m ore data b eco me availab le.
36 9
Ludwig ind icate s that the po sitio n o f The rm oana erobacter is u nce rt ain .
163
Thermoanaerobacter mathranii VP Larsen et al. 1998 A3, Y11279, Tab.mathra | DSM

11426
Thermoanaerobacter siderophilus VP Slobodkin et al. 1999 SR4, AF120479 | DSM
12299
Thermoanaerobacter subterraneus VP Fardeau et al. 2000 -> Caldanaerobacter subter-
raneus SEBR 7858, AF195797 | CNCM I-2383 | DSM 13054
Thermoanaerobacter sulfurophilus VP Bonch-Osmolovskaya 1998 L-64, Y16940,
Tab.slfphl | DSM 11584
Thermoanaerobacter tengcongensis VP Xue et al. 2001 -> Caldanaerobacter subterra-
neus subsp. teng congensis MB4, AF209708 | AS 1.2430 | JCM 11007
Thermoanaerobacter thermocopriae VP (Jin et al. 1988) Collins et al. 1994 <- Clostrid-
ium thermocopriae (basonym) JT 3-3 | IAM 13577, L09167, Tab.thcop2
Thermoanaerobacter thermohydrosulfuricus VP (Klaushofer and Parkkinen 1965) Lee
et al. 1993 <- Clostridium thermohydrosulfuricum (basonym) E100-69, L09161 |
ATCC 35045 | DSM 567, L09161, Tab.thsulf | NCIB 10956 | VKM B-1834
Thermoanaerobacter wiegelii VP Cook et al. 1996 Rt8.B1, X92513, Tab.wiegel | DSM
10319
Thermoanaerobacter yonseiensis VP Kim et al. 2001 -> Caldanaerobacter subterraneus
subsp. yonseiensis KB-1, AF212925 | DSM 13777 | KFCC 11116
Genus XII. Thermoanaerobium VP 370
Thermoanaerobium brockii VP (T) Zeikus et al. 1983 -> Thermoanaerobacter brockii
subsp. brockii HTD4, X58349, Tab.brock2 | ATCC 33075 | DSM 1457, L09165,
Tab.brocki
Thermoanaerobium acetigenum VP Nielsen et al. 1994 X6B | DSM 7040
Genus XIII. Thermovenabulum VP
Thermovenabulum ferriorganovorum VP (T) Zavarzina et al. 2002 Z-9801, AY033493 |
DSM 14006 | UNIQEM 210
Family II. "Thermodesulfobiaceae"
Genus I. Thermodesulfobium VP
Thermodesulfobium narugense VP (T) Mori et al. 2004 DSM 14796 | JCM 11510 | Na82,
AB077817 | NBRC 100082
Order III. Halanaerobiales VP 371
Family I. Halanaerobiaceae VP
Genus I. Halanaerobium VP (T)
Halanaerobium praevalens VP (T) Zeikus et al. 1984 GSL | ATCC 33744, M59123,
Han.praeve | DSM 2228, AB022034, Han.praev2
Halanaerobium acetethylicum VP (Rengpipat et al. 1989) Rainey et al. 1995 <-
Halobacteroides acetoethylicus (basonym) EIGI | ATCC 43120 | DSM 3532,
U32594, Hbac.aceet | DSM 3532, X89071, Han.aceth2
Halanaerobium alcaliphilum VP Tsai et al. 1995 GSLS, X81850, Han.alclph | DSM
8275
Halanaerobium congolense VP Ravot et al. 1998 DSM 11287 | SEBR 4224, U76632,
Han.congol
Halanaerobium fermentans VP Kobayashi et al. 2000 R-9, AB023308 | JCM 10494
Halanaerobium kushneri VP Bhupathiraju et al. 1999 VS-751 | ATCC 700103, U86446
Halanaerobium lacusrosei VP Cayol et al. 1995 H200, L39787, Han.lacuro | DSM 10165
Halanaerobium saccharolyticum subsp. saccharolyticum VP (Zhilina et al. 1992 emend.
Cayol et al. 1994) Rainey et al. 1995 <- Haloincola saccharolyticus subsp. sac-
charolyticus (basonym) Z-7787, L37424, Han.sacsa2 | Z-7787, Z49115, Han.sac-
sac | DSM 6643, X89069, Han.sacsa3 | DSM 6643, Z49115, Han.sacsac
37 0
Ludw ig in dicate s that the po sitio n o f The rm oana erobium is u nc ertain .
37 1
Lu dwig st ates tha t the position o f Haloan aerobiales is s tro ngly in?uen ced by the tre ein g me thod . Large sc ale P CA p lot s (G arrity and
Lilb urn) d o not p ro vide mu ch resolution, pe rh aps because of th e high le ve l of div ersity within the c lass . L udwig in dic ate s tha t the two families
are p hylog enetically coh erent a nd sug gests the p ossibility th at the y m ig ht be mem bers of a se parate phy lum . Hug enho ltz s uppo rts t he v ie w
tha t t he Haloana erobiale s are a phylum -level lin eage .
164
Halanaerobium saccharolyticum subsp. senegalense VP (Cayol et al. 1994) Rainey et

al. 1995 <- Haloincola saccharolyticus subsp. senegalensis (basonym) H150,
Z49116, Han.sacsen | DSM 7379, X89070, Han.sacse2 | DSM 7379, Z49116,
Han.sacsen
Halanaerobium salsuginis VP Bhupathiraju et al. 1994 ATCC 51327 | VS-752, L22890,
Han.salsug
Genus II. Halocella VP
Halocella cellulosilytica VP (T) Simancova et al. 1994 Z-10151 | ATCC 700086 | DSM
7362, X89072, Hcl.cellyt
Genus III. Halothermothrix VP
Halothermothrix orenii VP (T) Cayol et al. 1994 H168, L22016, Htt.orenii | DSM 9562 |
OCM 544
Family II. Halobacteroidaceae VP
Genus I. Halobacteroides VP (T)
Halobacteroides halobius VP (T) Oren et al. 1984 MD-1, U32595, Hbac.halo2 | ATCC
35273, U32595, Hbac.halo2 | DSM 5150, X89074, Hbac.halo3
Halobacteroides acetethylicus VP Rengpipat et al. 1989 -> Haloanaerobium ace-
toethylicum EIGI | ATCC 43120 | DSM 3532, U32594, Hbac.aceet | DSM 3532,
X89071, Han.aceth2
Halobacteroides elegans VP Zhilina et al. 1997 Z-7287, L37423, Hbac.halob | DSM
6639
Halobacteroides lacunaris VP Zhilina et al. 1992 -> Halanaerobacter lacunaris
Z-7888, L37421, Hla.lacuna | Z-7888, U32593, Hla.lacun2 | ATCC 49944 | DSM
6640, X89075, Hla.lacun3
Genus II. Acetohalobium VP
Acetohalobium arabaticum(T) Zhilina and Zavarzin 1990 Z-7288, L37422, Ach.araba2
| ATCC 49924 | DSM 5501, X89077, Ach.araba3
Genus III. Halanaerobacter VP

Halanaerobacter chitinovorans VP (T) Liaw and Mah 1996 W5C8, U32596, Hla.chitnv
| DSM 9569 | OCM 229, U32596, Hla.chitnv | OGM 229, X89076, Hla.chitn2
Halanaerobacter lacunaris VP (Zhilina et al. 1992) Rainey et al. 1995 <- Halobac-
teroides lacunaris (basonym) Z-7888, L37421, Hla.lacuna | Z-7888, U32593,
Hla.lacun2 | ATCC 49944 | DSM 6640, X89075, Hla.lacun3
Halanaerobacter salinarius VP Moun et al. 1999 SG3903, Y14212, Hla.salinr
Genus IV. Halonatronum VP
Halonatronum saccharophilum VP (T) Zhilina et al. 2001 Z-7986, AY014858 | DSM
13868 | UNIQEM 211
Genus V. Natroniella VP 372
Natroniella acetigena VP (T) Zhilina et al. 1996 Z-7937, X95817 | DSM 9952
Genus VI. Orenia VP
Orenia marismortui VP (T) (Oren et al. 1988) Rainey et al. 1995 <- Sporohalobacter
marismortui (basonym) DY-1 | ATCC 35420 | DSM 5156, X89073, O.marismor
Orenia salinaria VP Moun et al. 2000 SG 3902, Y18485 | ATCC 700911
Orenia sivashensis VP Zhilina et al. 2000 Z-7191, AF152595 | DSM 12596
Genus VII. Selenihalanaerobacter VP
Selenihalanaerobacter shriftii VP (T) Switzer Blum et al. 2001 373 DSSe-1 | ATCC
BAA-73, AF310247
Genus VIII. Sporohalobacter VP
Sporohalobacter lortetii VP (T) (Oren 1984) Oren et al. 1988 <- Clostridium lortetii (ba-
sonym) MD-2 | ATCC 35059, M59122, Shb.lortet | DSM 3070
Sporohalobacter marismortui VP Oren et al. 1988 -> Orenia marismortui DY-1 | ATCC
35420 | DSM 5156, X89073, O.marismor
37 2
In version 1.0 o f the Be rg eys O utlin e Natroniella wa s plac ed in t he Haloana erobiac eae. Bot h Switze r B loo m et. a l. a nd Zhalin a et al.
ha ve placed this gen us in the Halobacteroidiaceae.
37 3
165
Class II. Mollicutes AL

Order I. Mycoplasmatales AL (T)
Family I. Mycoplasmataceae AL
Genus I. Mycoplasma AL (T)
Mycoplasma mycoides subsp. mycoides AL (T) (Borrel et al. 1910) Freundt 1955 NCTC
10114
Mycoplasma mycoides subsp. capri AL (Edward 1953) Freundt 1955 NCTC 10137
Mycoplasma adleri VP Del Giudice et al. 1995 G145, U67943, M.adleri1 | ATCC 27948
Mycoplasma agalactiae AL (Wroblewski 1931) Freundt 1955 NCTC 10123, M24290,
M.agalacti
Mycoplasma agassizii VP Brown et al. 2001 374 PS6, U09786 | ATCC 700616
Mycoplasma alkalescens AL Leach 1973 PG 51, U44764, M.alkalesc | ATCC 29103 |
NCTC 10135
Mycoplasma alligatoris VP Brown et al. 2001 A21JP2, U56733 375 | ATCC 700619
Mycoplasma alvi AL Gourlay et al. 1977 Ilsley, U44765, M.alvi1 | ATCC 29626 | NCTC
10157
Mycoplasma anatis AL Roberts 1964 1340, AF412970 | ATCC 25524
Mycoplasma anseris VP Bradbury et al. 1988 1219, AF125584
Mycoplasma arginini AL Barile et al. 1968 ATCC 23838, M24579, M.arginini | ATCC
23838, U15794, M.arginin2
Mycoplasma arthritidis AL (Sabin 1941) Freundt 1955 ATCC 19611, M24580,
M.arthriti
Mycoplasma auris VP DaMassa et al. 1994 UIA, U67944, M.auris1 | ATCC 51348 |
NCTC 11731
Mycoplasma bovigenitalium AL Freundt 1955 PG-11, M24291, M.bovigeni | ATCC
19852, M24291, M.bovigeni
Mycoplasma bovirhinis AL Leach 1967 5M331 | PG 43, U44766, M.bovirhi3 | ATCC
27748 | NCTC 10118
Mycoplasma bovis AL (Hale et al. 1962) Askaa and Erno 1976 Donetta, U02968, M.bo-
vis | Donetta, U44767, M.bovis2 | PG 45 | ATCC 25523 | NCTC 10131
Mycoplasma bovoculi AL Langford and Leach 1973 M165/69, U44768, M.bovoculi |
ATCC 29104 | NCTC 10141
Mycoplasma buccale AL Freundt et al. 1974 CH 20247, AF125586 | ATCC 23636
Mycoplasma buteonis VP Poveda et al. 1994 Bb/T2g, AF412971 | ATCC 51371
Mycoplasma californicum VP Jasper et al. 1981 ST-6, M24582, M.californ | AMRC-C
1077 | ATCC 33461, M24582, M.californ
Mycoplasma canadense AL Langford et al. 1976 275C, U44769, M.canaden3 | ATCC
29418 | NCTC 10152
Mycoplasma canis AL Edward 1955 C55 | PG 14, AF412972, AF340023 | ATCC 19525
Mycoplasma capricolum subsp. capricolum AL Tully et al. 1974 California kid,
U26045, M.caprico5 | California kid, U26046, M.caprico6 | ATCC 27343 | NCTC
10154
Mycoplasma capricolum subsp. capripneumoniae VP Leach et al. 1993 F38, M94728,
M.sp.F38 | F38, U26042, M.caprico4 | NCTC 10192
Mycoplasma caviae AL Hill 1971 G122, AF221111 | ATCC 27108
Mycoplasma cavipharyngis VP Hill 1989 117C, AF125879 | ATCC 43016 | NCTC 11700
Mycoplasma citelli AL Rose et al. 1978 RG-2C , AF412973 | ATCC 29760
Mycoplasma cloacale VP Bradbury and Forrest 1984 383, AF125592 | ATCC 35276 |
NCTC 10199
Mycoplasma collis VP Hill 1983 58B, AF412974 | NCTC 10197
37 4
37 5
166
Mycoplasma columbinasale VP Jordan et al. 1982 694, AF221112 | ATCC 33549 | NCTC
10184
Mycoplasma columbinum AL Shimizu et al. 1978 MMP 1 , AF221113 | ATCC 29257
Mycoplasma columborale AL Shimizu et al. 1978 MMP 4 , AF412975 | ATCC 29258
Mycoplasma conjunctivae AL Barile et al. 1972 HRC/581 | ATCC 25834 | NCTC 10147
Mycoplasma corogypsi VP Panangala et al. 1993 BV1, L08054, M.corogyps | ATCC
51148
Mycoplasma cottewii VP DaMassa et al. 1994 VIS, U67945, M.cottewii | ATCC 51347
| NCTC 11732
Mycoplasma cricetuli VP Hill 1983 CH, AF412976 | NCTC 10190

Mycoplasma crocodyli VP Kirchhoff et al. 1997 MP145, AF412977 | ATCC 51981
Mycoplasma cynos AL Rosendal 1973 H831, AF412978 | ATCC 27544
Mycoplasma dispar AL Gourlay and Leach 1970 462/2, AF412979 | ATCC 27140
Mycoplasma edwardii AL Tully et al. 1970 C21 | ATCC 23462 | NCTC 10132
Mycoplasma elephantis VP Kirchhoff et al. 1996 E42, AF221121 | ATCC 51980
Mycoplasma ellychniae VP Tully et al. 1989 -> Entomoplasma ellychniae ELCN-1,
M24292, Enp.ellych | ATCC 43707, M24292, Enp.ellych
Mycoplasma equigenitalium AL Kirchhoff 1978 T37, AF221120 | ATCC 29869
Mycoplasma equirhinis AL Allam and Lemcke 1975 M432/72, AF125585 | ATCC 29420
Mycoplasma falconis VP Poveda et al. 1994 H/T1, AF125591 | ATCC 51372
Mycoplasma fastidiosum VP Lemcke and Poland 1980 4822, AF125878 | ATCC 33229 |
NCTC 10180
Mycoplasma faucium AL Freundt et al. 1974 DC 333, AF125590 | ATCC 25293
Mycoplasma felifaucium VP Hill 1988 PU | ATCC 43228, U15795, M.felifauc | NCTC
11703
Mycoplasma feliminutum AL Heyward et al. 1969 ATCC 25749, U16758, M.feliminu
Mycoplasma felis AL Cole et al. 1967 ATCC 23391, U09787, M.felis
Mycoplasma fermentans AL Edward 1955 PG18, M24289, M.fermenta | ATCC 19989,
M24289, M.fermenta
Mycoplasma ?occulare AL Meyling and Friis 1972 Ms42, L22210, M.? occul2 | Ms42,
X62699, M.?occula | Ms42, X63377, M.?occul3 | ATCC 27399 | NCTC 10143
Mycoplasma gallinaceum VP Jordan et al. 1982 DD, L24104, M.galnacem | ATCC
33550 | NCTC 10183
Mycoplasma gallinarum AL Freundt 1955 Fowl | ATCC 19708 | NCTC 10120
Mycoplasma gallisepticum AL Edward and Kanarek 1960 PG 31 | X95 | ATCC 19610 |
NCTC 10115
Mycoplasma gallopavonis VP Jordan et al. 1982 WP1 | WR1, AF412980 | ATCC 33551
| NCTC 10186
Mycoplasma gateae AL Cole et al. 1967 ATCC 23392, U15796, M.gateae

Mycoplasma genitalium VP Tully et al. 1983 G-37, X77334, M.genital2 | ATCC 33530
Mycoplasma glycophilum VP Forrest and Bradbury 1984 486, AF412981 | ATCC 35277
| NCTC 10194
Mycoplasma gypis VP Poveda et al. 1994 B1/T1, AF125589 | ATCC 51370

Mycoplasma haemocanis VP (Kreier and Ristic 1984) Messick et al. 2002 <- Haemo-
bartonella canis (basonym) , AF197337 376
Mycoplasma haemofelis VP (Kreier and Ristic 1984) Neimark et al. 2002 <- Haemo-
bartonella felis (basonym) , U88563, Hbn.felis2, U88564, Hbn.felis1, U95297,
Hbn.felis3 377
Mycoplasma haemomuris VP (Mayer 1921) Neimark et al. 2002 <- Haemobartonella
muris (basonym) , U82963, Hbn.muris1 378
Mycoplasma hominis AL (Freundt 1953) Edward 1955 H 50 | PG21, AJ002265, M.ho-
minis3 | Serotype 5 | ATCC 23114, M24473, M.hominis | NCTC 10111
37 6
Corre cte d n ame aft er specie s was illegitim ately assigne d Ca ndidatu s sta tus
37 7
37 8
167
Mycoplasma hyopharyngis VP Erickson et al. 1986 H3-6B F, U58997 | ATCC 35707

Mycoplasma hyopneumoniae AL Mare and Switzer 1965 ATCC 25934
Mycoplasma hyorhinis AL Switzer 1955 ATCC 17981, M24658, M.hyorhini
Mycoplasma hyosynoviae AL Ross and Karmon 1970 S16, U26730, M.hyosyno2 | ATCC
25591
Mycoplasma imitans VP Bradbury et al. 1993 4229, L24103, M.imitans | ATCC 51306 |
NCTC 11733
Mycoplasma indiense VP Hill 1993 3T, AF125593 | NCTC 11728
Mycoplasma iners AL Edward and Kanarek 1960 PG30, AF221114 | ATCC 19705
Mycoplasma iowae VP Jordan et al. 1982 695 | ATCC 33552, M24293, M.iowae | NCTC
10185
Mycoplasma lactucae VP Rose et al. 1990 -> Mesoplasma lactucae 831-C4, M24479,
Mes.lactuc | ATCC 49193, M24479, Mes.lactuc
Mycoplasma lagogenitalium VP Kobayashi et al. 1997 12MS, AF412983 | ATCC
700289
Mycoplasma leonicaptivi VP Hill 1992 3L2 | ATCC 49890, U16759, M.leocaptv | NCTC
11726
Mycoplasma leopharyngis VP Hill 1992 LL2 | ATCC 49889, U16760, M.leophryn |
NCTC 11725
Mycoplasma lipofaciens VP Bradbury et al. 1983 R171, AF221115 | ATCC 35015 |
NCTC 10191
Mycoplasma lipophilum AL Del Giudice et al. 1974 ATCC 27104, M24581, M.lipophil
Mycoplasma lucivorax VP Williamson et al. 1990 -> Entomoplasma lucivorax PIPN-2
| ATCC 49196
Mycoplasma luminosum VP Williamson et al. 1990 -> Entomoplasma luminosum

PIMN-1 | ATCC 49195
Mycoplasma maculosum AL Edward 1955 PG 15, AF221116 | ATCC 19327
Mycoplasma melaleucae VP Tully et al. 1990 -> Entomoplasma melaleucae M1,
M24478, Enp.melale | ATCC 49191, M24478, Enp.melale
Mycoplasma meleagridis AL Yamamoto et al. 1965 17529, L24106, M.meleagri | ATCC
25294
Mycoplasma microti VP Brown et al. 2001 379 IL371, AF212859 | ATCC 700935
Mycoplasma moatsii AL Madden et al. 1974 MK 405, AF412984 | ATCC 27625
Mycoplasma mobile VP Kirchhoff et al. 1987 163K | ATCC 43663, M24480, M.mobile
Mycoplasma molare AL Rosendal 1974 ATCC 27746
Mycoplasma muris VP McGarrity et al. 1983 RIII-4, M23939, M.muris | ATCC 33757,
M23939, M.muris
Mycoplasma mustelae VP Salih et al. 1983 MX9, AF412986 | AMRC-C 1486 | ATCC
35214 | NCTC 10193
Mycoplasma neurolyticum AL (Sabin 1941) Freundt 1955 ATCC 19988, M23944,
M.neurolyt
Mycoplasma opalescens AL Rosendal 1975 MH 5408 , AF221117 | ATCC 27921
Mycoplasma orale AL Taylor-Robinson et al. 1964 CH19299, M24659, M.orale | ATCC
23714, M24659, M.orale
Mycoplasma ovipneumoniae AL Carmichael et al. 1972 Y98, U44771, M.ovipneu3 |
ATCC 29419 | NCTC 10151
Mycoplasma ovis VP Neimark et al. 2004 <- Eperythrozoan ovis (basonym) , AF338268
Mycoplasma oxoniensis VP Hill 1991 128, AF412987 | NCTC 11712
Mycoplasma penetrans VP Lo et al. 1992 GTU-54-6A1, L10839, M.penetrns | ATCC
55252
Mycoplasma phocicerebrale VP Giebel et al. 1991 1049, AF304323 | ATCC 49640
Mycoplasma phocirhinis VP Giebel et al. 1991 852, AF304324 | ATCC 49639
Mycoplasma phocidae VP Ruhnke and Madoff 1992 105, AF304325 | ATCC 33657
37 9
168
Mycoplasma pirum VP Del Giudice et al. 1985 HRC 70-159, M23940, M.pirum | ATCC
25960, M23940, M.pirum
Mycoplasma pneumoniae AL Somerson et al. 1963 FH, M29061, M.pneumoni | ATCC
15531, M29061, M.pneumoni
Mycoplasma primatum AL Del Giudice et al. 1971 HRC/292, AF221118 | ATCC 25948
Mycoplasma pullorum VP Jordan et al. 1982 CKK, U58504, M.pullorum | ATCC 33553
| NCTC 10187
Mycoplasma pulmonis AL (Sabin 1941) Freundt 1955 ATCC 19612, M23941, M.pul-
monis
Mycoplasma putrefaciens AL Tully et al. 1974 C30 KS-1, U26055, M.putrefa2 | ATCC
15718
Mycoplasma salivarium AL Edward 1955 H110 | PG 20, M24661, M.salivari | ATCC
23064, M24661, M.salivari | NCTC 10113
Mycoplasma simbae VP Hill 1992 LX | ATCC 49888, U16323, M.simbae | NCTC 11725
Mycoplasma somnilux VP Williamson et al. 1990 -> Entomoplasma somnilux PYAN-1
| ATCC 49194, AY157871
Mycoplasma spermatophilum VP Hill 1991 AH159, AF221119 | NCTC 11720

Mycoplasma spumans AL Edward 1955 PG 13, AF125587 | ATCC 19526
Mycoplasma sturni VP Forsyth et al. 1996 ATCC 51945 | UCMF, U22013, M.sturnida
Mycoplasma sualvi AL Gourlay et al. 1978 May? eld (clone B), M23936, M.sualvi |
ATCC 33004, M23936, M.sualvi | NCTC 10170
Mycoplasma subdolum AL Lemcke and Kirchhoff 1979 TB, AF125588 | ATCC 29870
Mycoplasma suis VP (Splitter 1950) Neimark et al. 2002 <- Eperythrozoon suis (ba-
sonym) , AF029394, U88565 380
Mycoplasma synoviae AL Olson et al. 1964 ATCC 25204 | NCTC 10124 | WVU 1853,
L07757, M.synoviae | WVU 1853, X52083, M.synovia3
Mycoplasma testudinis VP Hill 1985 1008 | ATCC 43263, U09788, M.testudin | NCTC
11701
Mycoplasma verecundum AL Gourlay et al. 1974 ATCC 27862
Mycoplasma wenyonii VP (Adler and Ellenbogen 1934) Neimark et al. 2002 <- Epery-
throzoon wenyonii (basonym) 381
Mycoplasma yeatsii VP DaMassa et al. 1994 GIH, U67946, M.yeatsii1 | ATCC 51346 |
NCTC 11730
Genus II. Eperythrozoon AL
Eperythrozoon coccoides AL (T) Schilling 1928
Eperythrozoon ovis AL Neitz et al. 1934 ->
Eperythrozoon parvum AL Splitter 1950
Eperythrozoon suis AL Splitter 1950 -> Mycoplasma suis, AF029394, U88565
Eperythrozoon wenyonii AL Adler and Ellenbogen 1934 -> Mycoplasma wenyonii,
AF016546
Genus III. Haemobartonella AL 382
Haemobartonella muris AL (T) (Mayer 1921) Tyzzer and Weinman 1939 -> Mycoplasma
haemomuris, U82963, Hbn.muris1
Haemobartonella canis VP Kreier and Ristic 1984 -> Mycoplasma haemocanis
Haemobartonella felis VP Kreier and Ristic 1984 -> Mycoplasma haemofelis, U88563,
Hbn.felis2, U88564, Hbn.felis1, U95297, Hbn.felis3
Genus IV. Ureaplasma AL
Ureaplasma urealyticum AL (T) Shepard et al. 1974 960, M23935, Upl.urealy | CX8 |
Serotype VIII | ATCC 27618 | NCTC 10177, M23935, Upl.urealy
Ureaplasma canigenitalium VP Harasawa et al. 1993 D6P-C, D78648, Upl.cangen |
ATCC 51252
38 0
38 1
38 2
P CA p lots strongly sug gest that E perythrozoon and Ha emo bartone lla are dist antly rem ov ed from other me mbe rs of th e Mollic utes , ba sed
on 1 6S sequ ence data .
169
Ureaplasma cati VP Harasawa et al. 1990 F2, D78649, Upl.cati | ATCC 49228 | NCTC
11710
Ureaplasma diversum VP Howard and Gourlay 1982 A417, D78650, Upl.divers | NCTC
10182
Ureaplasma felinum VP Harasawa et al. 1990 FT2-B, D78651, Upl.felinu | ATCC 49229
| NCTC 11709
Ureaplasma gallorale VP Koshimizu et al. 1987 D6-1 | ATCC 43346, U62937, Upl.gal-
lor | NCTC 11707
Ureaplasma parvum VP Robertson et al. 2002 27 | ATCC 27815, AF073456 | NCTC
11736
Order II. Entomoplasmatales VP
Family I. Entomoplasmataceae VP
Genus I. Entomoplasma VP (T)
Entomoplasma ellychniae VP (T) (Tully et al. 1989) Tully et al. 1993 <- Mycoplasma elly-
chniae (basonym) ELCN-1, M24292, Enp.ellych | ATCC 43707, M24292, Enp.el-
lych
Entomoplasma freundtii VP Tully et al. 1998 BARC 318, AF036954 | ATCC 51999
Entomoplasma lucivorax VP (Williamson et al. 1990) Tully et al. 1993 <- Mycoplasma
lucivorax (basonym) PIPN-2, AF547212 | ATCC 49196
Entomoplasma luminosum VP (Williamson et al. 1990) Tully et al. 1993 <- Mycoplasma
luminosum (basonym) PIMN-1 | ATCC 49195, AY155670
Entomoplasma melaleucae VP (Tully et al. 1990) Tully et al. 1993 <- Mycoplasma
melaleucae (basonym) M1, M24478, Enp.melale | ATCC 49191, M24478,
Enp.melale
Entomoplasma somnilux VP (Williamson et al. 1990) Tully et al. 1993 <- Mycoplasma
somnilux (basonym) PYAN-1 | ATCC 49194, AY157871
Genus II. Mesoplasma VP
Mesoplasma ?orum VP (T) (McCoy et al. 1984) Tully et al. 1993 <- Acholeplasma ?orum
(basonym) L1, AF300327 | ATCC 33453
Mesoplasma chauliocola VP Tully et al. 1994 CHPA-2 | ATCC 49578, AY166704
Mesoplasma coleopterae VP Tully et al. 1994 BARC 779 | ATCC 49583
Mesoplasma corruscae VP Tully et al. 1994 ELCA-2 | ATCC 49579, AY168929
Mesoplasma entomophilum VP (Tully et al. 1988) Tully et al. 1993 <- Acholeplasma
entomophilum (basonym) TAC, M23931, Mes.entomo | ATCC 43706, M23931,
Mes.entomo
Mesoplasma grammopterae VP Tully et al. 1994 GRUA-1 | ATCC 49580, AY174170
Mesoplasma lactucae VP (Rose et al. 1990) Tully et al. 1993 <- Mycoplasma lactucae
(basonym) 831-C4, M24479, Mes.lactuc | ATCC 49193, M24479, Mes.lactuc
Mesoplasma photuris VP Tully et al. 1994 PUPA-2 | ATCC 49581, AY177627
Mesoplasma pleciae VP Tully et al. 1994 PS-1 | ATCC 49582, AY257485
Mesoplasma seiffertii VP (Bonnet et al. 1991) Tully et al. 1993 <- Acholeplasma seiffertii
(basonym) F7 | ATCC 49495, AY351331
Mesoplasma syrphidae VP Tully et al. 1994 YJS | ATCC 51578, AY231458
Mesoplasma tabanidae VP Tully et al. 1994 BARC 857, AY187288 | ATCC 49584
Family II. Spiroplasmataceae VP
Genus I. Spiroplasma AL (T)
Spiroplasma citri AL (T) Saglio et al. 1973 Morocco-R8-A2, X63781, Spp.cit2HP | ATCC
27556, M23942, Spp.citri | NCPPB 2647
Spiroplasma alleghenense VP Adams et al. 1997 PLHS-1 | ATCC 51752, AY189125
Spiroplasma apis VP Mouches et al. 1984 B 31, M23937, Spp.apis | ATCC 33834,
M23937, Spp.apis
Spiroplasma cantharicola VP Whitcomb et al. 1993 CC-1 | ATCC 43207
Spiroplasma chinense VP Guo et al. 1990 CCH | ATCC 43960, AY189126
Spiroplasma chrysopicola VP Whitcomb et al. 1997 DF-1 | ATCC 43209, AY189127
170
Spiroplasma clarkii VP Whitcomb et al. 1993 CN-5, M24474, Spp.clarki | ATCC 33827,
M24474, Spp.clarki
Spiroplasma corruscae VP Hackett et al. 1996 EC-1 | ATCC 43212, AY189128
Spiroplasma culicicola VP Hung et al. 1987 AES-1 | ATCC 35112, AY189129
Spiroplasma diabroticae VP Carle et al. 1997 DU-1, M24482, Spp.diabro | ATCC 43210
Spiroplasma diminutum VP Williamson et al. 1996 CUAS-1 | ATCC 49235, AY189130
Spiroplasma ?oricola VP Davis et al. 1981 23-6 | ATCC 29989, AY189131
Spiroplasma gladiatoris VP Whitcomb et al. 1997 TG-1, M24475, Spp.gladia | ATCC
43525, M24475, Spp.gladia
Spiroplasma helicoides VP Whitcomb et al. 1997 TABS-2 | ATCC 51746, AY189132
Spiroplasma insolitum VP Hackett et al. 1993 M55 | ATCC 33502, AY189133
Spiroplasma ixodetis VP Tully et al. 1995 Y32, M24477, Spp.ixodet | ATCC 33835,
M24477, Spp.ixodet
Spiroplasma kunkelii VP Whitcomb et al. 1986 E275 | ATCC 29320
Spiroplasma lampyridicola VP Stevens et al. 1997 PUP-1 | ATCC 43206, AY189134
Spiroplasma leptinotarsae VP Hackett et al. 1996 LD-1 | ATCC 43213, AY189305
Spiroplasma lineolae VP French et al. 1997 TALS-2 | ATCC 51749
Spiroplasma litorale VP Konai et al. 1997 TN-1 | ATCC 43211, AY189306
Spiroplasma melliferum VP Clark et al. 1985 BC-3, AY325304 | ATCC 33219
Spiroplasma mirum VP Tully et al. 1982 SMCA, M24662, Spp.mirum | ATCC 29335,
M24662, Spp.mirum
Spiroplasma monobiae VP Whitcomb et al. 1993 MQ-1, M24481, Spp.monobi | ATCC
33825
Spiroplasma montanense VP Whitcomb et al. 1997 HYOS-1 | ATCC 51745, AY189307
Spiroplasma phoeniceum VP Saillard et al. 1987 P40 | ATCC 43115
Spiroplasma platyhelix VP Williamson et al. 1997 PALS-1 | ATCC 51748
Spiroplasma poulsonii VP Williamson et al. 1999 DW-1, M24483, Spp.sp.DW1 | ATCC
43153
Spiroplasma sabaudiense VP Abalain-Colloc et al. 1987 Ar-1343 | ATCC 43303,
AY189308
Spiroplasma syrphidicola VP Whitcomb et al. 1996 EA-1 | ATCC 33826, AY189309
Spiroplasma tabanidicola VP Whitcomb et al. 1997 TAUS-1 | ATCC 51747
Spiroplasma taiwanense VP Abalain-Colloc et al. 1988 CT-1, M24476 | ATCC 43302,
M24476, Spp.taiwan, Spp.taiwan
Spiroplasma turonicum VP Hlias et al. 1998 Tab4c | ATCC 700271, AY189310
Spiroplasma velocicrescens VP Konai et al. 1995 MQ-4 | ATCC 35262, AY189311
Order III. Acholeplasmatales VP
Family I. Acholeplasmataceae AL
Genus I. Acholeplasma AL
Acholeplasma laidlawii AL (T) (Freundt 1955) Edward and Freundt 1970 PG8, U14905,
Acp.laidl2 | ATCC 23206, U14905, Acp.laidl2 | IMET 10894 | NCTC 10116
Acholeplasma axanthum AL Tully and Razin 1970 , S-743 , AF412968 ATCC 25176
Acholeplasma brassicae VP Tully et al. 1994 502 | ATCC 49388
Acholeplasma cavigenitalium VP Hill 1992 GP3 | NCTC 11727
Acholeplasma entomophilum VP Tully et al. 1988 -> Mesoplasma entomophilum TAC,
M23931, Mes.entomo | ATCC 43706, M23931, Mes.entomo
Acholeplasma equifetale AL Kirchoff 1974 ATCC 29724
Acholeplasma ?orum VP McCoy et al. 1984 -> Mesoplasma ?orum L1, AF300327 |
ATCC 33453
Acholeplasma granularum AL (Switzer 1964) Edward and Freundt 1970 ATCC 19168
Acholeplasma hippikon AL Kirchoff 1974 ATCC 29725
Acholeplasma modicum AL Leach 1973 PG 49, M23933, Acp.modicu | ATCC 29102,
M23933, Acp.modicu
Acholeplasma morum VP Rose et al. 1980 72-043 | PN525 | ATCC 33211
Acholeplasma multilocale VP Hill et al. 1992 NCTC 11723
171
Acholeplasma oculi AL Al-Aubaidi et al. 1973 19-L, U14904, Acp.oculi | ATCC 27350,
U14904, Acp.oculi
Acholeplasma palmae VP Tully et al. 1994 J233, L33734, Acp.spJ233 | ATCC 49389,
L33734, Acp.spJ233
Acholeplasma parvum VP Atobe et al. 1983 H23M | ATCC 29892
Acholeplasma seiffertii VP Bonnet et al. 1991 -> Mesoplasma seiffertii F7 | ATCC
49495
Acholeplasma vituli VP Angulo et al. 2000 FC 097-2, AF031479 | ATCC 70067,
AF031479
Genus II. "Phytoplasma"
Candidatus "Phytoplasma ulmi" Lee et al. 2004 AY197655
Order IV. Anaeroplasmatales VP
Family I. Anaeroplasmataceae VP
Genus I. Anaeroplasma AL (T) 383
Anaeroplasma abactoclasticum AL (T) Robinson et al. 1975 ATCC 27879, M25050,
Anp.abacto
Anaeroplasma bactoclasticum AL (Robinson and Hungate 1973) Robinson and Allison
1975 ATCC 27112, M25049, Anp.bactoc
Anaeroplasma intermedium VP Robinson and Freundt 1987 7LA | ATCC 43166
Anaeroplasma varium VP Robinson and Freundt 1987 A-2, M23934, Anp.varium |
ATCC 43167, M23934, Anp.varium
Genus II. Asteroleplasma VP
Asteroleplasma anaerobium VP (T) Robinson and Freundt 1987 161, M22351,
Ast.anaero | ATCC 27880, M22351, Ast.anaero
384
Order V. Incertae sedis

Family I. "Erysipelotrichaceae"
Genus I. Erysipelothrix AL
Erysipelothrix rhusiopathiae AL (T) (Migula 1900) Buchanan 1918 ATCC 19414,
AB019247, Ers.rhusi2 | ATCC 19414, M23728, Ers.rhusio | DSM 5055 | NCTC
8163
Erysipelothrix inopinata VP Verbarg et al. 2004 MF-EP02, AJ550617 | CIP 107935 |
DSM 15511
Erysipelothrix tonsillarum VP Takahashi et al. 1987 T-305 | ATCC 43339, AB019248,
Ers.tonsi2
Genus II. Bulleidia VP
Bulleidia extructa VP (T) Downes et al. 2000 W1219 | DSM 13220, AF220064
Genus III. Holdemania VP
Holdemania ?liformis VP (T) Willems et al. 1997 J1-31B-1 | ATCC 51649, Y11466,
Hld.?lfor | DSM 12042
Genus IV. Solobacterium VP
Solobacterium moorei VP (T) Kageyama and Benno 2000 RCA59-74, AB031056 | JCM
10645
Class III. "Bacilli"
Order I. Bacillales AL 385
Family I. Bacillaceae AL
Genus I. Bacillus AL (T)
Bacillus subtilis subsp. subtilis AL (T) (Ehrenberg 1835) Cohn 1872 NRS 744 | ATCC
6051 | CCM 2216 | DSM 10, AJ276351 | IAM 12118, AB042061 | NBRC 12210 |
IMET 10758 | JCM 1465 | LMG 7135 | NCIB 3610 | NCTC 3610
Bacillus subtilis subsp. spizizenii VP Nakamura et al. 1999 NRRL B-23049, AF074970
38 3
Th e type stra in s for all four spe cies of An aeroplama ha ve bee n fo und to be non-v iab le.
38 4
The ATC C d eposit is no nexisten t.
38 5
Lud wig states that a clear resolution amo ng the families o f B ac illales c ann ot b e a ch iev ed. Tax a hav e been rearrang ed to follow the broad er
top olo gy o f th e RDP an d ARB t re es.
172
Bacillus acidocaldarius AL Darland and Brock 1971 -> Alicyclobacillus acidocaldarius

104-IA | ATCC 27009 | DSM 446, X60742, Alb.acical | NBRC 1565 | IMET 11356
| JCM 5260 | NCIB 11725
Bacillus acidoterrestris VP Deinhard et al. 1988 -> Alicyclobacillus acidoterrestris

GD3B | ATCC 49025 | DSM 3922, X60602, Alb.aciter
Bacillus aeolius VP Gugliandolo et al. 2003 4-1, AJ504797 | CIP 107628 | DSM 15084
Bacillus agaradhaerens VP Nielsen et al. 1995 PN-105 | DSM 8721, X76445, B.sp8
Bacillus agri VP (ex Laubach and Rice 1916) Nakamura 1993 -> Brevibacillus agri =
Bacillus galactophilus (junior heterotypic synonym) ATCC 51663 | DSM 6348 |
NRRL NRS-1219, D78454, Bb.agri1
Bacillus alcalophilus AL Vedder 1934 ATCC 27647 | DSM 485, X60603, B.alcaloph |
DSM 485, X76436, B.alcalop2 | NCIB 10436 | NCIB 8772
Bacillus alginolyticus VP Nakamura 1987 -> Paenibacillus alginolyticus DSM 5050,
D78465, Pae.algily | NRRL NRS-1347
Bacillus alvei AL Cheshire and Cheyne 1885 -> Paenibacillus alvei IMAB B-3-4 |
ATCC 6344, X57304, Pae.alvei2 | CCM 2051 | DSM 29 | NBRC 3343 | LMG 13253
| NCIB 9371 | NCTC 6352
Bacillus amyloliquefaciens VP (ex Fukumoto 1943) Priest et al. 1987 Fukumoto strain
F | ATCC 23350, X60605, B.amylique | DSM 7 | LMG 9814
Bacillus amylolyticus VP (ex Choukvitch 1911) Nakamura 1984 -> Paenibacillus amy-
lolyticus 290 | ATCC 9995 | DSM 3034 | LMG 11153 | NRRL B-377 | NRRL NRS-
290, D85396
Bacillus aneurinolyticus VP (ex Kimura and Aoyama 1952) Shida et al. 1994 ->
Aneurinibacillus aneurinilyticus NRS 1589 | ATCC 12856, D78455, Ab.anurly3 |
CIP 104007 | DSM 5562, X94194, Ab.anurly2 | IAM 1077 | NBRC 1552 | JCM 9024
Bacillus anthracis AL Cohn 1872 ATCC 14578
Bacillus arseniciselenatis VP Switzer Blum et al. 2001 386 E1H, AF064705 | ATCC
700614
Bacillus atrophaeus VP Nakamura 1989 ATCC 49337 | CCUG 28524 | CIP 107159 | DSM
7364 | JCM 9070, AB021181 | LMG 16797 | NRRL NRS-213
Bacillus azoto?xans VP Seldin et al. 1984 -> Paenibacillus azoto?xans P3L-5 | ATCC
35681, X60608, Pae.azo? 2 | DSM 5976 | LMG 14658
Bacillus azotoformans VP (ex Pichinoty et al. 1976) Pichinoty et al. 1983 ATCC 29788,
X60609, B.azotofor | CCM 2849 | CIP R925 | DSM 1046, D78309, B.azotofo2
Bacillus badius AL Batchelor 1919 ATCC 14574, D78310, B.badius3 | ATCC 14574,
X77790, B.badius2 | CCM 2113 | DSM 23 | NCIB 9364 | NCTC 10333
Bacillus barbaricus VP Tubel et al. 2003 V2-BIII-A2, AJ422145 | CCM 4982 | DSM
14730
Bacillus bataviensis VP Heyrman et al. 2004 R-16315 | DSM 15601 | IDA1115,
AJ542508 | LMG 21833
Bacillus benzoevorans VP Pichinoty et al. 1987 B1 | ATCC 49005 | CCM 3364 | DSM
5391, D78311, B.benzoev2 | LMD 79.7 | NCIB 12555
Bacillus borstelensis VP (ex Porter) Shida et al. 1995 -> Brevibacillus borstelensis B4 |
ATCC 51668 | CIP 104545 | DSM 6347 | NBRC 15714 | JCM 9022 | NRRL NRS-818,
D78456, Bb.borstel
Bacillus brevis AL Migula 1900 -> Brevibacillus brevis 27B | ATCC 8246, M10111,
Bb.brevis1 | CCM 2050 | DSM 30 | JCM 2503, D78457, Bb.brevis3 | LMG 16703 |
NCIB 9372, X60612, Bb.brevis | NCTC 2611
Bacillus carboniphilus VP Fujita et al. 1996 Kasumi 6 | JCM 9731, AB021182
Bacillus centrosporus VP (ex Ford 1916) Nakamura 1993 -> Brevibacillus centrosporus
120 | ATCC 51661 | DSM 8445 | NRRL NRS-664, D78458, Bb.centspr
Bacillus cereus AL Frankland and Frankland 1887 ATCC 14579 | CCM 2010 | DSM 31 |
LMG 6923 | NCIB 9373 | NCTC 2599
38 6
173
Bacillus chitinolyticus VP Kuroshima et al. 1996 EAG-3 | DSM 11030 | NBRC 15660,
AB021183
Bacillus chondroitinus VP Nakamura 1987 -> Paenibacillus chondroitinus DSM 5051,
D82064, Pae.chndro | NRRL NRS-1351
Bacillus choshinensis VP Takagi et al. 1993 -> Brevibacillus choshinensis HPD 52,
D78459, Bb.choshin | ATCC 51359 | CIP 103838 | DSM 8552 | JCM 8505
Bacillus circulans AL Jordan 1890 26 | ATCC 4513 | CCM 2048 | DSM 11 | IMET 11259
| JCM 2504 | LMG 13261 | NCDO 1775, X60613, B.circulan | NCIB 9374 | NCTC
2610
Bacillus clarkii VP Nielsen et al. 1995 PN-102 | VP 395 | DSM 8720, X76444, B.sp7
Bacillus clausii VP Nielsen et al. 1995 C 360 | PN-23 | CIP 104718 | DSM 8716, X76440,
B.sp3 | NCIMB 10309
Bacillus coagulans AL Hammer 1915 ATCC 7050 | CCM 2013 | DSM 1 | IAM 1115,
D16267, B.coagula2 | IMET 10993 | JCM 2257, D78313, B.coagula3 | NCDO 1761,
X60614, B.coagulan | NCIB 9365 | NCTC 10334
Bacillus cohnii VP Spanka and Fritze 1993 RSH | ATCC 5122 | CCM 4369 | DSM 6307,
X76437, B.cohnii | NBRC 15565
Bacillus curdlanolyticus VP Kanzawa et al. 1995 -> Paenibacillus curdlanolyticus
DSM 10247 | NBRC 15724, D78466, Pae.curdly | YK9
Bacillus cycloheptanicus VP Deinhard et al. 1988 -> Alicyclobacillus cycloheptanicus
SCH, X52489 | ATCC 49028 | DSM 4006 | NBRC 15310
Bacillus decolorationis VP Heyrman et al. 2003 DSM 14890 | LMG 19507, AJ315075
Bacillus dipsosauri VP Lawson et al. 1996 -> Gracilibacillus dipsosauri DD1,
X82436, Grb.dipsau | DSM 11125 | NCFB 3027
Bacillus drentensis VP Heyrman et al. 2004 R-16337 | DSM 15600 | IDA1967 | LMG
21831, AJ542506
Bacillus edaphicus VP Shelobolina et al. 1998 T7, AF006076, B.edaphicu | VKPM
B-7517
Bacillus ehimensis VP Kuroshima et al. 1996 EAG-5 | DSM 11029 | NBRC 15659,
AB021184
Bacillus endophyticus VP Reva et al. 2002 2DT, AF295302 | CIP 106778 | UCM B-5715
Bacillus fastidiosus AL den Dooren de Jong 1929 ATCC 29604 | Delft LMD 29-14 | DSM
91, X60615, B.fastidio | LMD 29-14 | NCIB 11326
Bacillus ?rmus AL Bredemann and Werner 1933 ATCC 14575 | CCM 2213 | DSM 12 |
IAM 12464, D16268, B.?rmus2 | NBRC 15306 | JCM 2512, D78314, B.?rmus3 |
LMG 7125 | NCIB 9366, X60616, B.?rmus | NCTC 10335
Bacillus ?exus VP (ex Batchelor 1919) Priest et al. 1989 NRS 665 | ATCC 49095 | DSM
1320 | NBRC 15715, AB021185
Bacillus formosus VP (ex Porter) Shida et al. 1995 -> Brevibacillus formosus F12 | NRS
863, D78460, Bb.formosu | DSM 9885 | NBRC 15716 | JCM 9169 | NRRL NRS-863
Bacillus fumarioli VP Logan et al. 2000 Rcp Sm1 | LMG 17489, AJ250056
Bacillus funiculus VP Ajithkumar et al. 2002 NAF001, AB049195 | JCM 11201 | CIP
107128
Bacillus fusiformis VP (ex Meyer and Gottheil 1901) Priest et al. 1989 ATCC 7055,
L14013, B.fusifor2 | DSM 2898
Bacillus galactosidilyticus VP Heyndrickx, 2004 Logan B2188 | LMG 17892, AJ535638
| DSM 15595 | MB 800
Bacillus galactophilus VP Takagi et al. 1993 = Bacillus agri (senior heterotypic syn-
onym) JCM 8507 | NRRL NRS-616
Bacillus gibsonii VP Nielsen et al. 1995 PN-109 | CIP 104720 | DSM 8722, X76446,
B.sp9
Bacillus globisporus subsp. globisporus AL Larkin and Stokes 1967 -> Sporosarcina
globispora W 25, X54967, B.globisp2 | ATCC 23301 | CCM 2119 | DSM 4, X68415,
B.globisp3 | NCIB 11434, X60644, B.globispr
174
Bacillus globisporus subsp. marinus AL Rger and Richter 1979 -> Bacillus marinus
ATCC 29841 | DSM 1297, AJ237708
Bacillus glucanolyticus VP Alexander and Priest 1989 -> Paenibacillus glucanolyticus
B0030 | S93 | ATCC 49278 | DSM 5162, D78470, Pae.glulyt | NBRC 15330 | NCIMB
12809
Bacillus gordonae VP Pichinoty et al. 1987 -> Paenibacillus gordonae Q1 | ATCC
29948, X60617, Pae.valid2
Bacillus halmapalus VP Nielsen et al. 1995 PN-118 | DSM 8723, X76447, B.sp10
Bacillus haloalkaliphilus VP Fritze 1996 WN13 | DSM 5271, X72876, B.spWN13
Bacillus halodenitri?cans VP Denariaz et al. 1989 ATCC 49067, AB021186 | DSM
10037
Bacillus halodurans VP (ex Boyer 1973) Nielsen et al. 1995 PN-80 | ATCC 27557 | DSM
497, AJ302709 | NRRL B-3881
Bacillus halophilus VP Ventosa et al. 1990 N23-2 | ATCC 49085 | CCM 4074 | DSM 4771,
AJ243920, AB021188
Bacillus horikoshii VP Nielsen et al. 1995 JP 277 | PN-121 | DSM 8719, X76443, B.sp6
Bacillus horti VP Yumoto et al. 1998 K13, D87035, B.horti1 | JCM 9943
Bacillus infernus VP Boone et al. 1995 TH-23, U20385, B.infernu2 | DSM 10277 | OCM
459 | SMCC/W 479
Bacillus insolitus AL Larkin and Stokes 1967 W16B | ATCC 23299 | CCM 2175 | DSM
5, X60642, B.insolitu | NCIB 11433
Bacillus jeotgali VP Yoon et al. 2001 YKJ-10, AF221061 | JCM 10885 | KCCM 41040
Bacillus kaustophilus VP (ex Prickett 1928) Priest et al. 1989 -> Geobacillus
kaustophilus NRS 7281 | ATCC 8005 | DSM 7263 | NCIMB 8547, X60618,
B.kaustoph | NRRL-NRS 81
Bacillus kobensis VP Kanzawa et al. 1995 -> Paenibacillus kobensis YK205 | DSM
10249 | NBRC 15729, D78471, Pae.kobens
Bacillus laevolacticus VP (ex Nakayama and Yanoshi 1967) Andersch et al. 1994 M 8 |
ATCC 23492 | DSM 442 | IAM 12321, D16270, B.lvolacti | JCM 2513 | NCIB 10269
Bacillus larvae AL White 1906 -> Paenibacillus larvae Med-540 | ATCC 9545,
X60619, Pae.larvae | DSM 7030 | LMG 9820 | NRRL B-2605
Bacillus laterosporus AL Laubach 1916 -> Brevibacillus laterosporus AMC 797 |
AMNH 797 | ATCC 64 | CCM 2116 | DSM 25, X57307, Bb.lateros | IAM 12465,
D16271, Bb.latero3 | NBRC 15654 | JCM 2496, D78461, Bb.latero4 | LMG 16000 |
NCIB 9367 | NCTC 6357
Bacillus lautus VP (ex Batchelor 1919) Nakamura 1984 -> Paenibacillus lautus ATCC
43898 | DSM 3035 | LMG 11157 | NCIMB 12780, X60621, Pae.lautus | NRRL NRS-
666, D78473, Pae.lautu2
Bacillus lentimorbus AL Dutky 1940 -> Paenibacillus lentimorbus ATCC 14707,
AF071861, Pae.lenti3 | ATCC 14707, X60622, Pae.lentim
Bacillus lentus AL Gibson 1935 ATCC 10840 | CCM 2214 | DSM 9 | IAM 12466, D16272,
B.lentus2 | NBRC 15655 | JCM 2511, D78315, B.lentus3 | NCIB 8773 | NCTC 4824
Bacillus licheniformis AL (Weigmann 1898) Chester 1901 ATCC 14580 | CCM 2145 |
DSM 13, X68416, B.licheni2 | NBRC 12200 | NCDO 1772, X60623, B.lichenif |
NCIB 9375 | NCTC 10341
Bacillus luciferensis VP Logan et al. 2002 SSI061 | CIP 107105 | LMG 18422, AJ419629
Bacillus macerans AL Schardinger 1905 -> Paenibacillus macerans ATCC 8244,
X57306, Pae.macer2 | CCM 2012 | DSM 24, X57306, Pae.macer2 | IAM 1227 |
LMG 13281 | NCIB 9368 | NCTC 6355
Bacillus macquariensis AL Marshall and Ohye 1966 -> Paenibacillus macquariensis
ATCC 23464, X57305, Pae.macqri | DSM 2 | LMG 13289 | NCIB 9934 | NCTC
10419, X60625, Pae.macqr2

Bacillus marinus VP (Rger and Richter 1979) Rger 1983 <- Bacillus globisporus
subsp. marinus (basonym) -> Marinibacillus marinus ATCC 29841 | DSM 1297,
AJ237708
175
Bacillus marismortui VP Arahal et al. 1999 -> Salibacillus marismortui 123,

AJ009793 | ATCC 700626 | CECT 5066 | CIP 105609 | DSM 12325
Bacillus megaterium AL de Bary 1884 ATCC 14581 | CCM 2007 | DSM 32, X60629,
B.megateri | NCIB 9376 | NCTC 10342
Bacillus methanolicus VP Arfman et al. 1992 PB1 | NCIMB 1311
Bacillus migulanus VP Takagi et al. 1993 -> Aneurinibacillus migulanus ATCC 9999,
D78462, Ab.migulan | CIP 103841 | DSM 2895, X94195, Ab.migula2 | NBRC 15520
| JCM 8504 | NCIB 7096 | NCTC 7096 | VKM B-1722
Bacillus mojavensis VP Roberts et al. 1994 RO-H-1 | ATCC 51516 | DSM 9205 | NBRC
15718, AB021191 | NRRL B-14698
Bacillus mucilaginosus VP Avakyan et al. 1998 emend. Shelobolina et al. 1998 1480D,
AF006077, B.mucilagi | VKPM B-7519
Bacillus mycoides AL Flgge 1886 ATCC 6462, AF155956, AB021192 | DSM 2048
Bacillus naganoensis VP Tomimura et al. 1990 D 39 | ACM 5005 | ATCC 53909,
AB021193, AB021193 | DSM 10191
Bacillus nealsonii VP Venkateswaran et al. 2003 FO-92, AF234863 | ATCC BAA-519 |
DSM 15077
Bacillus neidei VP Nakamura et al. 2002 JCM 11077 | NRRL BD-87, AF169520
Bacillus niacini VP Nagel and Andreesen 1991 DSM 2923 | NBRC 15566, AB021194
Bacillus novalis VP Heyrman et al. 2004 R-15439 | DSM 15603 | IDA3307 | LMG 21837
| AJ542512
Bacillus odysseyi VP La Duc et al. 2004 34hs-1, AF526913 | ATCC PTA-4993 | NBRC
100172 | NRRL B-30641
Bacillus oleronius VP Kuhnigk et al. 1996 Rt 10 | CIP 104972 | DSM 9356, X82492,
B.oleroniu
Bacillus okuhidensis VP Zhiyu et al. 2002 GTC 854, AB047684 | JCM 10945 | DSM
13666
Bacillus pabuli VP (ex Schieblich 1923) Nakamura 1984 -> Paenibacillus pabuli
ATCC 43899 | DSM 3036 | LMG 11158 | NCIMB 12781, X60630, Pae.pabuli |
NRRL NRS-924
Bacillus pallidus VP Scholz et al. 1988 ATCC 51176 | DSM 3670, Z26930, B.pallidus |
H12
Bacillus pantothenticus AL Proom and Knight 1950 -> Virgibacillus pantothenticus B
21 | CN 3028 | ATCC 14576 | CCM 2049 | DSM 26 | NCIB 8775 | NCTC 8162
Bacillus parabrevis VP Takagi et al. 1993 -> Brevibacillus parabrevis ATCC 10027 |
CIP 103840 | DSM 8376 | NBRC 12334, D78463, Bb.prbrevi | JCM 8506
Bacillus pasteurii AL (Miquel 1889) Chester 1898 -> Sporosarcina pasteurii 22 | ATCC
11859 | CCM 2056 | DSM 33 | NCIMB 8841, X60631, B.pasteuri | NCTC 4822
Bacillus peoriae VP Montefusco et al. 1993 -> Paenibacillus peoriae 11.B.9 | BD-57 |
DSM 8320 | NBRC 15541, D78476, Pae.peoria | LMG 14832 | NRRL B-14750
Bacillus polymyxa AL (Prazmowski 1880) Mace 1889 -> Paenibacillus polymyxa
ATCC 842 | BUCSAV 162 | CCM 1459 | DSM 36, X57308, Pae.plymyx | IAM
13419, D16276, Pae.plymy3 | NBRC 15309 | JCM 2507 | LMG 13294 | NCIB 8158 |
NCTC 10343
Bacillus popilliae AL Dutky 1940 -> Paenibacillus popilliae ATCC 14706, AF071859,
Pae.popill | ATCC 14706, X60633, Pae.popil2
Bacillus pseudalcaliphilus VP Nielsen et al. 1995 PN-137 | DSM 8725, X76449, B.sp12
Bacillus pseudo?rmus VP Nielsen et al. 1995 C 324 | PN-3 | DSM 8715, X76439, B.sp2
| NCIMB 10283
Bacillus pseudomycoides VP Nakamura 1998 DSM 12442 | NRRL B-617

Bacillus psychrodurans VP Abd El-Rahman et al. 2002 68E3 | DSM 11713, AJ277984
| NCIMB 13837
Bacillus psychrophilus VP Nakamura 1984 -> Sporosarcina psychrophila W16A,

X54968, B.psycphi2 | ATCC 23304, X60634, B.psycphil | CCM 2117 | DSM 3 |
NRRL NRS 1530
176
Bacillus psychrosaccharolyticus VP Priest et al. 1989 T25B | ATCC 23296, X60635,

B.psycsacc | DSM 6 | NCIB 11729
Bacillus psychrotolerans VP Abd El-Rahman et al. 2002 3H1 | DSM 11706, AJ277983
| NCIMB 13838
Bacillus pulvifaciens VP (ex Katznelson 1950) Nakamura 1984 -> Paenibacillus pulv-
ifaciens ATCC 49843 | DSM 3615 | LMG 6911 | NCIMB 11201 | NRRL B-3685
Bacillus pumilus AL Meyer and Gottheil 1901 ATCC 7061 | CCM 2144 | DSM 27,
AY456263 | NBRC 12092 | JCM 2508 | NCIB 9369 | NCTC 10337
Bacillus pycnus VP Nakamura et al. 2002 JCM 11075 | NRRL NRS-1691, AF169531
Bacillus reuszeri VP Shida et al. 1995 -> Brevibacillus reuszeri Army strain 39 | ATCC
51665 | CIP 104543 | DSM 9887 | NBRC 15719 | JCM 9170 | NRRL NRS-1206,
D78464, Bb.reuszer
Bacillus salexigens VP Garabito et al. 1997 -> Salibacillus salexigens C-20Mo,
Y11603, Sa.salexig | ATCC 700290 | CCM 4646 | DSM 11483
Bacillus schlegelii VP Schenk and Aragno 1981 MA 48 | ATCC 43741 | DSM 2000,
Z26934, B.schlegel
Bacillus selenitireducens VP Switzer Blum et al. 2001 387 MLS10, AF064704 | ATCC
700615
Bacillus shackletonii VP Logan et al. 2004 CIP 107762 | LMG 18435, AJ250318
Bacillus silvestris VP Rheims et al. 1999 HR3-23, AJ006086, B.silvestr | DSM 12223
Bacillus simplex VP (ex Meyer and Gottheil 1901) Priest et al. 1989 NRS 960 | ATCC
49097 | DSM 1321, D78478, B.simplex3 | DSM 1321, X60638, B.simplex
Bacillus siralis VP Pettersson et al. 2000 171544, AF071856 | CIP 106295 | DSM 13140,
| NCIMB 13601
Bacillus smithii VP Nakamura et al. 1988 DSM 4216, X60643, B.smithii | DSM 4216,
Z26935, B.smithii2 | NBRC 15311 | JCM 9076, D78316, B.smithii3 | NRRL NRS-
173
Bacillus soli VP Heyrman et al. 2004 R-16300 | LMG 21838, AJ542513 | DSM 15604 |
IDA0086
Bacillus sonorensis VP Palmisano et al. 2001 L8710 | DSM 13779 | NRRL B-23154,
AF302118
Bacillus sphaericus AL Meyer and Neide 1904 ATCC 14577, L14010, B.sphaeri7 | CCM
2120 | DSM 28 | IAM 13420, D16280, B.sphaeri8 | JCM 2502 | LMG 7134 | NCIB
9370 | NCTC 10338
Bacillus sporothermodurans VP Petterson et al. 1996 GmbH | M215, U49078,
B.sporther | M215, U49079, B.sporthe2 | M215, U49080, B.sporthe3 | UHT-milk |
DSMZ 10599
Bacillus stearothermophilus AL Donk 1920 -> Geobacillus stearothermophilus NCA
26 | ATCC 12980 | CCM 2062 | CCUG 26241 | DSM 22, AJ294817 | IAM 11062 |
NBRC 12550 | NCIB 8923 | NCTC 10339
Bacillus subterraneus VP Kanso et al. 2002 COOI3B, AY007244 | ATCC BAA-136 |
DSM 13966
Bacillus thermantarcticus VP Nicolaus et al. 2002 M1 | DSM 9572 388
Bacillus thermoaerophilus VP Meier-Stauffer et al. 1996 -> Aneurinibacillus ther-
moaerophilus L420-91, X94196, B.thaeroph | DSM 10154, X94196, B.thaeroph
Bacillus thermoamylovorans VP Combet-Blanc et al. 1995 DKP | CNCM I-1378,
L27478
Bacillus thermocatenulatus VP Golovacheva 1991 -> Geobacillus thermocatenulatus
178 | DSM 730, Z26926, B.thcatenu | NBRC 15316 | VKM B-1259
Bacillus thermocloacae VP Demharter and Hensel 1989 S6025, Z26939 | ATCC 49805 |
DSM 5250
38 7
38 8
177
Bacillus thermodenitri?cans VP (ex Klaushofer and Hollaus 1970) Manachini et al.

2000 -> Geobacillus thermodenitri?cans DSM 465, Z26928
Bacillus thermoglucosidasius VP Suzuki 1984 -> Geobacillus thermoglucosidasius KP
1006 | ATCC 43742, X60641, B.thglucos | DSM 2542 | NCIB 11955
Bacillus thermoleovorans VP Zarilla and Perry 1988 -> Geobacillus thermoleovorans
LEH-1 | ATCC 43513, M77488, B.thleovo2 | DSM 5366, Z26923, B.thleovor
Bacillus thermoruber VP (ex Guicciardi et al. 1968) Manachini et al. 1985 -> Bre-
vibacillus thermoruber BT2 | MIM 30.8.38 | DSM 7064, Z26921, Bb.thruber
Bacillus thermosphaericus VP Andersson et al. 1996 -> Ureibacillus thermosphaericus
P-11, X90640, B.thsphaer | DSM 10633 | HAMBI 1900
Bacillus thiaminolyticus VP Nakamura 1990 -> Paenibacillus thiaminolyticus AHU

1392 | DSM 7262 | JCM 8360, D78475, Pae.thiamn | NRRL B-4156
Bacillus thuringiensis AL Berliner 1915 ATCC 10792, AF290545 | CCM 19 | DSM 2046,
B.thurin10 | NCIB 9134, X55062, B.thuringi
Bacillus tusciae VP Bonjour and Aragno 1985 T2 | DSM 2912, Z26933, B.tusciae | NBRC
15312
Bacillus validus VP (ex Bredemann and Heigener 1935) Nakamura 1984 -> Paenibacil-
lus validus ATCC 43897 | DSM 3037, D78320 | LMG 11161 | NRRL NRS-1000
Bacillus vallismortis VP Roberts et al. 1996 DV1-F-3 | DSM 11031, AB021198 | NRRL
B-14890
Bacillus vedderi VP Agnew et al. 1996 JaH, Z48306, B.vedderi | ATCC 700130 | DSM
9768
Bacillus vireti VP Heyrman et al. 2004 R-15447 | DSM 15602 | IDA3632 | LMG 21834,
AJ542509
Bacillus vulcani VP Caccamo et al. 2000 3s-1, AJ293805 | CIP 106305 | DSM 13174
Bacillus weihenstephanensis VP Lechner et al. 1998 WSBC 10204 | DSM 11821,
AB021199
Genus II. Amphibacillus VP
Amphibacillus xylanus VP (T) Niimura et al. 1990 Ep01 | ATCC 51415 | DSM 6626 | NBRC
15112 | JCM 7361, D82065, Amh.xylanu
Amphibacillus fermentum VP Zhilina et al. 2002 Uniqem 210 | DSM 13869 | Z-7984,
AF418603
Amphibacillus tropicus VP Zhilina et al. 2002 Uniqem 212 | DSM 13870 | Z-7792,
AF418602
Genus III. Anoxybacillus VP
Anoxybacillus pushchinoensis VP (T) Pikuta et al. 2000 K1, AJ010478 | ATCC 700785 |
DSM 12423 | VKM B-2193
Anoxybacillus ?avithermus VP Pikuta et al. 2000 d.y., Z26932 | DSM 2641
Genus IV. Exiguobacterium VP
Exiguobacterium aurantiacum VP (T) Collins et al. 1984 BL 77/1 | ATCC 35652 | DSM
6208 | NCDO 2321, X70316, Exg.aurant | NCIB 11798
Exiguobacterium acetylicum VP (Levine and Soppeland 1926) Farrow et al. 1994 <- Bre-
vibacterium acetylicum (basonym) 1005 | ATCC 953 | DSM 20416 | IMET 11072 |
NCIB 9889, X70313, Exg.acety2
Exiguobacterium antarcticum VP Fruhling et al. 2002 H2, AJ297437 | DSM 14480 | CIP
107163
Exiguobacterium undae VP Fruhling et al. 2002 L2, AJ344151 | DSM 14481 | CIP
197162
Genus V. Filobacillus VP
Filobacillus milosensis VP Schlesner et al. 2001 SH 714, AJ238042 | ATCC 700960 |
DSM 13259
Genus VI. Geobacillus VP
Geobacillus stearothermophilus VP (T) (Donk 1920) Nazina et al. 2001 389 <- Bacillus
stearothermophilus (basonym) NCA 26 | ATCC 12980 | CCM 2062 | CCUG 26241
38 9
178
DSM 22, AJ294817 | IAM 11062 | NBRC 12550 | NCDO 1768, X60640 | NCIB 8923
|
NCTC 10339
|
Geobacillus caldoxylosilyticus VP (Ahmad et al. 2000) Fortina et al. 2001 <- Saccha-
rococcus caldoxylosilyticus (basonym) S1812, AF067651 | ATCC 700356 | DSM
97-987 | DSM 12041
Geobacillus kaustophilus VP (Priest et al. 1989) Nazina et al. 2001 390 <- Bacillus
kaustophilus (basonym) NRS 7281 | ATCC 8005 | DSM 7263 | NCIMB 8547,
X60618, B.kaustoph | NRRL-NRS 81
Geobacillus subterraneus VP Nazina et al. 2001 34, AF276306 | AS12673 | DSM 13552
| VKM B-2226
Geobacillus thermocatenulatus VP (Golovacheva 1991) Nazina et al. 2001 <- Bacillus

thermocatenulatus (basonym) 178 | DSM 730, Z26926, B.thcatenu | NBRC 15316
| VKM B-1259
Geobacillus thermodenitri?cans VP (Manachini et al. 2000) Nazina et al. 2001 391 <-
Bacillus thermodenitri?cans (basonym) DSM 465, Z26928
Geobacillus thermoglucosidasius VP (Suzuki 1984) Nazina et al. 2001 392 <- Bacillus
thermoglucosidasius (basonym) KP 1006 | ATCC 43742, X60641, B.thglucos |
DSM 2542 | NCIB 11955
Geobacillus thermoleovorans VP (Zarilla and Perry 1988) Nazina et al. 2001 393 <- Bacil-
lus thermoleovorans (basonym) LEH-1 | ATCC 43513, M77488, B.thleovo2 | DSM
5366, Z26923, B.thleovor
Geobacillus toebii VP Sung et al. 2002 BK-1, AF326278 | DSM 14590 | KCTC 0306BP
Geobacillus uzenensis VP Nazina et al. 2001 U, AF276304 | AS 12674 | DSM 13551 |
VKM B-2229
Genus VII. Gracilibacillus VP
Gracilibacillus halotolerans VP (T) Wain et al. 1999 NN, AF036922, Grb.haltol | DSM
11805
Gracilibacillus dipsosauri VP (Lawson et al. 1996) Wain et al. 1999 <- Bacillus dip-
sosauri (basonym) DD1, X82436, Grb.dipsau | DSM 11125 | NCFB 3027
Genus VIII. Halobacillus VP
Halobacillus halophilus VP (T) (Claus et al. 1984) Spring et al. 1996 <- Sporosarcina
halophila (basonym) 3 | ATCC 35676 | DSM 2266
Halobacillus karajensis VP Amoozegar et al. 2003 MA-2, AJ486874 | DSM 14948 |
LMG 21515
Halobacillus litoralis VP Spring et al. 1996 SL-4, X94558, Hbl.litora | DSM 10405
Halobacillus salinus VP Yoon et al. 2003 HSL-3, AF500003 | JCM 11546 | KCCM 41590
Halobacillus trueperi VP Spring et al. 1996 SL-5 | DSM 10404, AJ310149
Genus IX. Jeotgalibacillus VP
Jeotgalibacillus alimentarius VP (T) Yoon et al. 2001 YKJ-13, AF281158 | JCM 10872 |
KCCM 80002
Genus X. Lentibacillus VP
Lentibacillus salicampi VP (T) Yoon et al. 2002 SF-20, AY057394 | JCM 11462 | KCCM
41560
Genus XI. Marinibacillus VP
Marinibacillus marinus VP (T) (Rger and Richter 1979) Yoon et al. 2001 394 <- Bacillus
marinus (basonym) ATCC 29841 | DSM 1297, AJ237708
39 0
39 1
39 2
39 3
39 4
179
Genus XII. Oceanobacillus VP

Oceanobacillus iheyensis VP (T) Lu et al. 2002 HTE831, AB010863 | DSM 14371 | JCM
11309
Genus XIII. Paraliobacillus VP
Paraliobacillus ryukyuensis VP (T) Ishikawa et al. 2003 O15-7, AB087828 | DSM 15140
| IAM 15001 | NBRC100001 | NRIC 0520
Genus XIV. Saccharococcus VP

Saccharococcus thermophilus VP (T) Nystrand 1984 657 | ATCC 43125, L09227,
Sac.thmoph | ATCC 43125, X70430, Sac.thmop2 | CCM 3586 | DSM 4749
Saccharococcus caldoxylosilyticus VP Ahmad et al. 2000 -> Geobacillus caldoxylosi-
lyticus S1812, AF067651 | ATCC 700356 | DSM 97-987
Genus XV. Salibacillus VP
Salibacillus salexigens VP (T) (Garabito et al. 1997) Wain et al. 1999 <- Bacillus
salexigens (basonym) -> Virgibacillus marismortui C-20Mo, Y11603, Sa.salexig
| ATCC 700290 | CCM 4646 | DSM 11483
Salibacillus marismortui VP (Arahal et al. 1999) Arahal et al. 2000 <- Bacillus maris-
mortui (basonym) -> Virgibacillus marismortui 123, AJ009793 | DSM 12325
Genus XVI. Ureibacillus VP
Ureibacillus thermosphaericus VP (T) (Andersson et al. 1996) Fortina et al. 2001 <-
Bacillus thermosphaericus (basonym) P-11, X90640, B.thsphaer | DSM 10633 |
HAMBI 1900
Ureibacillus terrenus VP Fortina et al. 2001 TH9A, AJ276403 | DSM 12654 | LMG
19470
Genus XVII. Virgibacillus VP
Virgibacillus pantothenticus VP (T) (Proom and Knight 1950) Heyndrickx et al. 1999
<- Bacillus pantothenticus (basonym) B 21 | CN 3028 | ATCC 14576 | CCM 2049
| DSM 26 | LMG 7129 | NCDO 1765, X60627, Vr.pantoth | NCIMB 8775 | NCTC
8162
Virgibacillus carmonensis VP Heyrman et al. 2003 DSM 14868 | LMG 20964, AJ316302
Virgibacillus marismortui VP (Arahal et al. 1999) Heyrman et al. 2003 <- Salibacillus
marismortui (basonym) 123, AJ009793 | ATCC 700626 | CECT 5066 | CIP 105609
| DSM 12325
Virgibacillus necropolis VP Heyrman et al. 2003 DSM 14866 | LMG 19488, AJ315056
Virgibacillus picturae VP Heyrman et al. 2003 DSM 14867 | LMG 19492, AJ315060
Virgibacillus proomii VP Heyndrickx et al. 1999 LMG 12370, AJ012667
Virgibacillus salexigens VP (Garabito et al. 1997) Heyrman et al. 2003 <- Salibacillus
salexigens (basonym) C-20Mo, Y11603 | ATCC 700290 | CCM 4646 | DSM 11483
Family II. "Alicyclobacillaceae" 395
Genus I. Alicyclobacillus VP
Alicyclobacillus acidocaldarius subsp. acidocaldarius VP (T) (Darland and Brock 1971)
Wisotzkey et al. 1992 <- Bacillus acidocaldarius (basonym) 104-1A | ATCC
27009, AB042056 | DSM 446, X60742, AJ496806, Alb.acical | NBRC 15652 | IMET
11356 | JCM 5260
Alicyclobacillus acidocaldarius subsp. rittmannii VP Nicolaus et al. 2002 396 MR1 | DSM
11297, AB089859
Alicyclobacillus acidiphilus VP Matsubara et al. 2002 TA-67, AB076660 | DSM 14558
| IAM 14935 | NRIC 6496
Alicyclobacillus acidoterrestris VP (Deinhard et al. 1988) Wisotzkey et al. 1992 <-

Bacillus acidoterrestris (basonym) GD3B | ATCC 49025 | DSM 3922, X60602,
Alb.aciter | NCIB 11725
39 5
Within the A RB tre e, t he A licyclo bacillacea e represen t a deep bran ch wit hin the order Bac illa les .
39 6
180
Alicyclobacillus cycloheptanicus VP (Deinhard et al. 1988) Wisotzkey et al. 1992 <-

Bacillus cycloheptanicus (basonym) SCH | ATCC 49028 | DSM 4006, X51928,
AB042059 | NBRC 15310
Alicyclobacillus herbarius VP Goto et al. 2002 CP-1, AB042055 | DSM 13609 | IAM
14883 | NRIC 0477
Alicyclobacillus hesperidum VP Albuquerque et al. 2000 FR-11, AJ133633 | DSM
12489
Alicyclobacillus sendaiensis VP Tsuruoka et al. 2003 NTAP-1, AB084128 | ATCC BAA-
609 | JCM 11817
Genus II. Pasteuria AL
Pasteuria ramosa AL (T) Metchnikoff 1888 397
Pasteuria nishizawae VP Sayre et al. 1992
Pasteuria penetrans VP (ex Thorne 1940) Sayre and Starr 1986
Pasteuria thornei VP Starr and Sayre 1988 ATCC 15713
Genus III. Sulfobacillus VP 398
Sulfobacillus thermosul?dooxidans VP (T) Golovacheva and Karavaiko 1991 AT-1,
X91080, Sfb.tsoxi2 | DSM 9293 | VKM B-1269, Z21979, Sfb.tsoxid
Sulfobacillus acidophilus VP Norris et al. 1996 NAL, AF050169 | DSM 10332, Sfb.aci-
dop
Sulfobacillus disul?dooxidans VP Dufresne et al. 1996 SD-11, U34974, Sfb.dislfx | SD-6
| ATCC 51911 | DSM 12064
Family III. Caryophanaceae AL

Genus I. Caryophanon AL (T)
Caryophanon latum AL (T) Peshkoff 1939 NCIB 9533, X70314, Crp.latum2
Caryophanon tenue VP (Peshkoff 1939) Trentini 1988 NCIB 9535
Family IV. "Listeriaceae"
Genus I. Listeria AL
Listeria monocytogenes AL (T) (Murray et al. 1926) Pirie 1940 53 XXIII | ATCC 15313 |
DSM 20600 | NCTC 10357, X56153, Lis.monoc2 | SLCC 53
Listeria denitri?cans AL Prevot 1961 -> Jonesia denitri?cans 55134 | ATCC 14870 |
CIP 55134 | DSM 20603 | IMET 7763 | NCTC 10816
Listeria grayi AL Errebo Larsen and Seeliger 1966 = Listeria murrayi (junior heterotypic
synonym) Li 2080 | ATCC 19120, X98526, Lis.grayi2 | DSM 20601
Listeria innocua VP Seeliger 1983 58 | ATCC 33090, X98527, Lis.innoc3 | DSM 20649 |
NCTC 11288, X56152, Lis.innocu | SLCC 3379
Listeria ivanovii subsp. ivanovii VP Seeliger et al. 1984 Li 1979 | ATCC 19119 | CLIP
12510, X98528, Lis.ivano2 | DSM 20750 | SLCC 2739
Listeria ivanovii subsp. londoniensis VP Boerlin et al. 1992 CNL 89/5081 | CIP 103466
| CLIP 12229, X98529, Lis.ivano3 | DSM 12491
Listeria murrayi AL Welshimer and Meredith 1971 = Listeria grayi (senior heterotypic
synonym) ATCC 25401 | CIP 76124 | DSM 20596 | NCTC 10812, X56154,
Lis.grayi3
Listeria seeligeri VP Rocourt and Grimont 1983 1120 | ATCC 35967 | CIP 100100 | DSM
20751 | NCTC 11856, X56148, Lis.seelig | SLCC 3954
Listeria welshimeri VP Rocourt and Grimont 1983 V8 | ATCC 35897, X98532,
Lis.welsh2 | CIP 8149 | DSM 20650 | SLCC 5334
Genus II. Brochothrix AL
Brochothrix thermosphacta AL (T) (McLean and Sulzbacher 1953) Sneath and Jones 1976
SW 26 | ATCC 11509, M58798, Bro.thermo | DSM 20171 | IMET 11238 | NCDO
1676, X56155, Bro.therm2 | NCIB 10018

Brochothrix campestris VP Talon et al. 1988 S3 | ATCC 43754, X56156, Bro.campes |
CIP 102920 | DSM 4712
39 7
S train ATC C 273 77 wa s p ro posed a s a neo typ e stra in for Pa ste uria ram os a bu t was reje cte d. It is now the t ype st ra in o f Pirellula s taleyi.
39 8
L udwig stat es that Su lfob acillus m igh t be a m emb er of a s epa ra te ph ylum. Hu genh olt z s up ports this view.
181
Family V. "Paenibacillaceae" 399

Genus I. Paenibacillus VP
Paenibacillus polymyxa VP (T) (Prazmowski 1880) Ash et al. 1994 <- Bacillus polymyxa
(basonym) ATCC 842 | BUCSAV 162 | CCM 1459 | DSM 36, X57308, Pae.plymyx
| IAM 13419, D16276, Pae.plymy3 | NBRC 15309 | JCM 2507 | LMG 13294 | NCIB
8158 | NCTC 10343

Paenibacillus agarexedens VP (ex Wieringa 1941) Uetanabaro et al. 2003 10 | CIP
107437 | DSM 1327, AJ345020
Paenibacillus agaridevorans VP Uetanabaro et al. 2003 65 | CIP 107436 | DSM 1355,
AJ345023
Paenibacillus alginolyticus VP (Nakamura 1987) Shida et al. 1997 <- Bacillus alginolyti-
cus (basonym) ATCC 51185 | DSMZ 5050, D78465, Pae.algily | NRRL NRS-1347
Paenibacillus alvei VP (Cheshire and Cheyne 1885) Ash et al. 1994 <- Bacillus alvei
(basonym) ATCC 6344, X57304, Pae.alvei2 | CCM 2051 | DSM 29 | NBRC 3343,
D78317, Pae.alvei | IMAB B-3-4 | LMG 13253 | NCIB 9371 | NCTC 6352
Paenibacillus amylolyticus VP (Nakamura 1984) Ash et al. 1994 emend. Shida et al.
1997 <- Bacillus amylolyticus (basonym) 290 | ATCC 9995 | DSM 3034 | LMG
11153 | NRRL B-377 | NRRL NRS 290, D85396, Pae.amyly2
Paenibacillus apiarius VP Nakamura 1996 BX 3 | ATCC 29575 | DSM 5581 | NRRL NRS
1438, U49247, Pae.apiari
Paenibacillus azoreducens VP Meehan et al. 2001 CM1, AJ272249 | DSM 13822 |
NCIMB 13761
Paenibacillus azoto?xans VP (Seldin et al. 1984) Ash et al. 1994 = Paenibacillus durus
(senior heterotypic synonym) <- Bacillus azoto?xans (basonym) P3L-5 | ATCC
35681, X60608, Pae.azo? 2 | DSM 5976 | LMG 14658
Paenibacillus borealis VP Elo et al. 2001 KK19, AJ011322 | CCUG 43137 | DSM 13188
Paenibacillus brasilensis VP von der Weid et al. 2002 PB172, AF273740 | ATCC BAA-
413 | DSM 14914
Paenibacillus campinasensis VP Yoon et al. 1998 324, AF021924, Pae.campin | KCTC
0364B
Paenibacillus chibensis VP Shida et al. 1997 DSM 11731 | HSCC 442 | NBRC 15958 |
JCM 9905 | NRRL B-142, D85395, Pae.chiben
Paenibacillus chinjuensis VP Yoon et al. 2002 WN9, AF164345 | JCM 10939 | KCTC
8951
Paenibacillus chondroitinus VP (Nakamura 1987) Shida et al. 1997 <- Bacillus chon-
droitinus (basonym) ATCC 51184 | DSMZ 5051, D82064, Pae.chndro | HSCC 176
| NBRC 15376 | JCM 9072 | NRRL NRS-1351
Paenibacillus curdlanolyticus VP (Kanzawa et al. 1995) Shida et al. 1997 <- Bacillus
curdlanolyticus (basonym) YK9 | ATCC 51898 | CIP 104575 | DSM 10247 | HSCC
491 | NBRC 15724, D78466, Pae.curdly
Paenibacillus daejeonensis VP Lee et al. 2002 AP-20, AF290916 | JCM 11237 | KCTC
3750
Paenibacillus dendritiformis VP Tcherpakov et al. 1999 BGSC 30A1 | T168
Paenibacillus durus VP (Smith and Cato 1974) Collins et al. 1994 <- Clostridium du-
rum (basonym) = Paenibacillus azoto?xans (junior heterotypic synonym) ATCC
27763, X77846 | DSM 1735
Paenibacillus favisporus VP Velzquez et al. 2004 GMP01, AY208751 | CECT 5760 |
LMG 20987
Paenibacillus glucanolyticus VP (Alexander and Priest 1989) Shida et al. 1997 <- Bacil-
lus glucanolyticus (basonym) B0030 | S93 | ATCC 49278 | DSMZ 5162, D78470,
Pae.glulyt | NBRC 15330 | NCIMB 12809
Paenibacillus glycanilyticus VP Dasman et al. 2002 DS-1, AB042938 | NBRC 16618 |
JCM 11221 | NRRL B-23455
39 9
The fam ily Pae nib acillaceae presents som e prob lem s. Lu dwig s tate s t hat Brev iba cillus and P aenibac illu s group toge ther, as do A m-
mo nip hilus, A neurinib acillus, an d O xalo phag us. Further rea rran geme nts are lik ely to tak e pla ce as work on Volum e III progres se s.
182
Paenibacillus gordonae VP (Pichinoty et al. 1987) Ash et al. 1994 = Paenibacillus

validus (senior heterotypic synonym) <- Bacillus gordonae (basonym) Q1 | ATCC
29948, X60617, Pae.valid2 | DSM 5395, D78320 | LMG 9817 | NCIB 12553
Paenibacillus graminis VP Berge et al. 2002 RSA19, AJ223987 | ATCC BAA-95 | LMG
19080
Paenibacillus granivorans VP Van der Maarel et al. 2001 400 A30, AF237682 | CBS
229.89
Paenibacillus illinoisensis VP Shida et al. 1997 DSM 11733 | HSCC 309 | NBRC 15959
| JCM 9907 | NRRL NRS-1356, D85397, Pae.illnoi
Paenibacillus jamilae VP Aguilera et al. 2001 B.3 | CECT 5266, AJ271157 401 | DSM
13815
Paenibacillus kobensis VP (Kanzawa et al. 1995) Shida et al. 1997 <- Bacillus koben-
sis (basonym) YK205 | ATCC 51900 | CIP 104576 | DSM 10249 | NBRC 15729,
D78471, Pae.kobens
Paenibacillus koleovorans VP Takeda et al. 2002 TB, AB041720 | IAM 14926 | JCM
11186 | KCTC 13912
Paenibacillus koreensis VP Chung et al. 2000 YC300, AF130254 | KCTC 2393 | KCCM
40903
Paenibacillus kribbensis VP Yoon et al. 2003 AM49, AF391123 | JCM 11465 | KCTC
0766BP
Paenibacillus larvae subsp. larvae VP (White 1906) Ash et al. 1994 emend. Heyndrickx
et al. 1996 <- Bacillus larvae (basonym) Med-540 | ATCC 9545, X60619, Pae.lar-
vae | DSM 7030 | LMG 9820 | NRRL B-2605
Paenibacillus larvae subsp. pulvifaciens VP (Nakamura 1984) Heyndrickx et al. 1996
<- Paenibacillus pulvifaciens (basonym) ATCC 13537, AY030080 | DSM 3615 |
LMG 15974 | LMG 6911 | NCIMB 11201 | NRRL B-3685
Paenibacillus lautus VP (Nakamura 1984) Heyndrickx et al. 1996 <- Bacillus lautus (ba-
sonym) ATCC 43898 | DSM 3035 | LMG 11157 | NCIMB 12780, X60621, Pae.lau-
tus | NRRL NRS 666, D78473, Pae.lautu2
Paenibacillus lentimorbus VP (Dutky 1940) Pettersson et al. 1999 <- Bacillus lentimor-
bus (basonym) ATCC 14707, AF071861, Pae.lenti3
Paenibacillus macerans VP (Schardinger 1905) Ash et al. 1994 <- Bacillus macerans
(basonym) ATCC 8244, X57306, Pae.macer2 | CCM 2012 | DSM 24, X57306,
Pae.macer2 | IAM 1227 | JCM 2500, D78319, Pae.macern | LMG 13281 | NCDO
1764, X60624, Pae.macer3 | NCIB 9368 | NCTC 6355
Paenibacillus macquariensis VP (Marshall and Ohye 1966) Ash et al. 1994 <- Bacil-
lus macquariensis (basonym) ATCC 23464, X57305, Pae.macqri | DSM 2 | LMG
13289 | NCIB 9934 | NCTC 10419, X60625, Pae.macqr2
Paenibacillus naphthalenovorans VP Daane et al. 2002 PR-N1, AF353681 | ATCC
BAA-206 | DSM 14203
Paenibacillus nematophilus VP Enright et al. 2003 NEM1a, AF480935 | DSM 13559 |
NCIMB 13845
Paenibacillus odorifer VP Berge et al. 2002 TOD45, AJ223990 | ATCC BAA-93 | LMG
19079
Paenibacillus pabuli VP (Nakamura 1984) Ash et al. 1994 <- Bacillus pabuli (basonym)
ATCC 43899 | DSM 3036 | LMG 11158 | NCIMB 12781, X60630, Pae.pabuli | NRRL
NRS 924
Paenibacillus peoriae VP (Montefusco et al. 1993) Heyndrickx et al. 1996 <- Bacillus
peoriae (basonym) 11.B.9 | BD-57 | DSM 8320 | NBRC 15541, D78476, Pae.peoria
| LMG 14832 | NRRL B-14750
Paenibacillus popilliae VP (Dutky 1940) Pettersson et al. 1999 <- Bacillus popilliae
(basonym) ATCC 14706, AF071859, Pae.popill
40 0
40 1
Ge nBa nk accession num ber rep orted in correctly in IJSE M.
183
Paenibacillus pulvifaciens VP (Nakamura 1984) Ash et al. 1994 <- Bacillus pulv-
ifaciens (basonym) -> Paenibacillus larvae subsp. pulvifaciens ATCC 49843,
AY030080
Paenibacillus terrae VP Yoon et al. 2003 AM141, AF391124 | JCM 11466 | KCCM
41557
Paenibacillus thiaminolyticus VP (Nakamura 1990) Shida et al. 1997 <- Bacillus thi-
aminolyticus (basonym) AHU 1393 | DSM 7262 | HSCC 148 | NBRC 15656 | JCM
8360, D78475, Pae.thiamn | NRRL B-4156
Paenibacillus turicensis VP Bosshard et al. 2002 MOL722, AF378694 | DSM 14349 |
NCCB 100011
Paenibacillus validus VP (Nakamura 1984) Ash et al. 1994 emend. Heyndrickx et al.
1995 <- Bacillus validus (basonym) = Paenibacillus gordonae (junior heterotypic
synonym) ATCC 43897 | DSM 3037, D78320, Pae.validu | LMG 11161 | NRRL
NRS 1000
Genus II. Ammoniphilus VP 402
Ammoniphilus oxalaticus VP (T) Zaitsev et al. 1998 RAOx-1 | DSM 11538 | HAMBI 2283,
Y14578
Ammoniphilus oxalivorans VP Zaitsev et al. 1998 RAOx-FS, Y14580, Amm.oxaliv |
DSM 11537 | HAMBI 2284
Genus III. Aneurinibacillus VP
Aneurinibacillus aneurinilyticus VP (T) (Shida et al. 1994) Shida et al. 1996 emend.
Heyndrickx et al. 1997 <- Bacillus aneurinolyticus (basonym) NRS 1589 | ATCC
12856, D78455, Ab.anurly3 | CIP 104007 | DSM 5562, X94194, Ab.anurly2 | IAM
1077 | NBRC 15521 | JCM 9024 | NCIMB 10056, X60645, Ab.anurlyt
Aneurinibacillus danicus VP Goto et al. 2004 IAM 15048 | NCIMB 13288, AB112725
Aneurinibacillus migulanus VP (Takagi et al. 1993) Shida et al. 1996 emend. Heyndrickx
et al. 1997 <- Bacillus migulanus (basonym) ATCC 9999, D78462, Ab.migulan
| CIP 10381 | DSM 2895, X94195, Ab.migula2 | NBRC 15520 | JCM 8504 | NCIB
7096 | NCTC 7096 | VKM B-1722

Aneurinibacillus thermoaerophilus VP (Meier-Stauffer et al. 1996) Heyndrickx et al.
1997 <- Bacillus thermoaerophilus (basonym) L420-91, X94196, B.thaeroph |
DSM 10154, X94196, B.thaeroph | LMG 17165
Genus IV. Brevibacillus VP
Brevibacillus brevis VP (T) (Migula 1900) Shida et al. 1996 <- Bacillus brevis (basonym)
27B | ATCC 8246, M10111, Bb.brevis1 | CCM 2050 | CIP 52.86 | JCM 2503, D78457,
Bb.brevis3 | LMG 16703 | NCIB 9372, X60612, Bb.brevis | NCTC 2611
Brevibacillus agri VP (Nakamura 1993) Shida et al. 1996 <- Bacillus agri (basonym)
DSMZ 6348 | NBRC 15538 | JCM 9067 | NRRL NRS-1219, D78454, Bb.agri1
Brevibacillus borstelensis VP (Shida et al. 1995) Shida et al. 1996 <- Bacillus borste-
lensis (basonym) B4 | ATCC 51668 | CIP 104545 | DSM 6347 | NBRC 15714 | JCM
9022 | NRRL NRS-818, D78456, Bb.borstel
Brevibacillus centrosporus VP (Nakamura 1993) Shida et al. 1996 <- Bacillus centro-
sporus (basonym) 120 | ATCC 51661 | DSM 8445 | NBRC 15540 | JCM 9071 | NRRL
NRS-664, D78458, Bb.centspr
Brevibacillus choshinensis VP (Takagi et al. 1993) Shida et al. 1996 <- Bacillus choshi-
nensis (basonym) HPD 52, D78459, Bb.choshin | ATCC 51359 | CIP 103838 | DSM
8552 | NBRC 15518 | JCM 8505
Brevibacillus formosus VP (Shida et al. 1995) Shida et al. 1996 <- Bacillus formosus
(basonym) F12 | DSM 9885 | NBRC 15716 | JCM 9169 | NRRL NRS-863 | NRS
863, D78460, Bb.formosu
Brevibacillus invocatus VP Logan et al. 2002 B2156 | CIP 106911 | LMG 18962,
AF378231 | NCIMB 13772
Brevibacillus laterosporus VP (Laubach 1916) Shida et al. 1996 <- Bacillus laterosporus
(basonym) AMC 797 | AMNH 797 | ATCC 64 | CCM 2116 | CIP 52.83 | DSM 25,
40 2
The cu rren t placeme nt of Am moniphilu s is questionab le.
184
X57307, Bb.lateros | IAM 12465, D16271, Bb.latero3 | NBRC 15654 | JCM 2496,
D78461, Bb.latero4 | LMG 16000 | NCDO 1763, X60620, Bb.latero2 | NCIB 9367 |
NCTC 6357
Brevibacillus limnophilus VP Goto et al. 2004 DSM 6472, AB112717 | NRRL NRS-887
Brevibacillus parabrevis VP (Takagi et al. 1993) Shida et al. 1996 <- Bacillus parabre-
vis (basonym) ATCC 10027 | CIP 103840 | DSM 8376 | NBRC 12334, D78463,
Bb.prbrevi | JCM 8506
Brevibacillus reuszeri VP (Shida et al. 1995) Shida et al. 1996 <- Bacillus reuszeri
(basonym) Army strain 39 | ATCC 51665 | CIP | CIP 104543 | DSM 9887 | NBRC
15719 | JCM 9170 | NRRL NRS 1206, D78464, Bb.reuszer
Brevibacillus thermoruber VP (Manachini et al. 1985) Shida et al. 1996 <- Bacillus
thermoruber (basonym) BT2 | MIM 30.8.38 | DSMZ 7064, Z26921, Bb.thruber
Genus V. Oxalophagus VP
Oxalophagus oxalicus VP (T) (Dehning and Schink 1990) Collins et al. 1994 <- Clostrid-
ium oxalicum (basonym) Alt Ox1 | DSM 5503, X77840, Oxl.oxalic | DSM 5503,
Y14581, Oxl.oxali2
Genus VI. Thermicanus VP
Thermicanus aegyptius VP (T) Gner et al. 2000 ET-5b | DSM 12793, AJ242495
Genus VII. Thermobacillus VP
Thermobacillus xylanilyticus VP (T) Touzel et al. 2000 XE, AJ005795 | CNCM I-1017
Family VI. Planococcaceae AL
Genus I. Planococcus AL (T)
Planococcus citreus AL (T) Migula 1894 628 | ATCC 14404 | CCM 316 | DSM 20549 |
NCMB 1493, X62172, Plc.citreu
Planococcus alkanoclasticus VP Engelhardt et al. 2001 403 MAE2, AF029364 | NCIMB
13489
Planococcus antarcticus VP Reddy et al. 2002 CMS 26or, AJ314745 | DSM 14505 |
MTCC 3854
Planococcus halophilus AL Novitsky and Kushner 1976 -> Marinococcus halophilus
ATCC 27964 | CCM 2706 | DSM 20408, X90835 | JCM 2479 | NRCC 14033
Planococcus kocurii VP Hao and Komagata 1986 AJ 3345 | HK 701 | CCM 1849 | DSM
20747 | IAM 12847 | JCM 2569 | NCMB 629, X62173, Plc.kocuri
Planococcus maitriensis VP Alam et al. 2004 S1, AJ544622 | DSM 15305 | MTCC 4827
Planococcus maritimus VP Yoon et al. 2003 TF-9, AF500007 | JCM 11543 | KCCM
41587
Planococcus mcmeekinii VP Junge et al. 1998 -> Planomicrobium mcmeekinii S23F2,
AF041791, Plc.mcmeek | ATCC 700539
Planococcus okeanokoites VP (ZoBell and Upham 1944) Nakagawa et al. 1996 <-
Flavobacterium okeanokoites (basonym) -> Planomicrobium okeanokoites CCM
320 | NBRC 12536, D55729, Plc.okeano | NCIMB 561
Planococcus psychrophilus VP Reddy et al. 2002 CMS 53or, AJ314746 | DSM 14507 |
MTCC 3812
Planococcus ri?etoensis VP Romano et al. 2003 ATCC BAA-790 | DSM 15069 | M8,
AJ493659
Genus II. Filibacter VP
Filibacter limicola VP (T) Maiden and Jones 1985 1SS101 | NCIB 11923
Genus III. Kurthia AL
Kurthia zop?i AL (T) (Kurth 1883) Trevisan 1885 F 64/100 | ATCC 33403, M58800,
Kur.zop? i | DSM 20580 | NCIB 9878, X70321, Kur.zop?2 | NCTC 10597
Kurthia gibsonii VP Shaw and Keddie 1983 S8 | ATCC 43195 | DSM 20636 | NCIB 9758,
X70320, Kur.gibson
Kurthia sibirica VP Belikova et al. 1988 13-22 | CCM 3477 | DSM 4747 | VKM B-1549
Genus IV. Planomicrobium VP
40 3
185
Planomicrobium koreense VP (T) Yoon et al. 2001 JG07, AF144750 | JCM 10704 | KCTC
3684
Planomicrobium mcmeekinii VP (Junge et al. 1998) Yoon et al. 2001 404 <- Planococcus
mcmeekinii (basonym) S23F2, AF041791, Plc.mcmeek | ATCC 700539
Planomicrobium okeanokoites VP (ZoBell and Upham 1944) Yoon et al. 2001 405
<- Planococcus okeanokoites (basonym) CCM 320 | NBRC 12536, D55729,
Plc.okeano | NCIMB 561
Genus V. Sporosarcina AL
Sporosarcina ureae AL (T) (Beijerinck 1901) Kluyver and van Niel 1936 ATCC 6473 |
CCM 684 | DSM 2281 | NCIB 9251, X62175, Spo.ureae
Sporosarcina aquimarina VP Yoon et al. 2001 SW28, AF202056 | JCM 10887 | KCCM
41039
Sporosarcina globispora VP (Larkin and Stokes 1967) Yoon et al. 2001 406 <- Bacillus
globisporus subsp. globisporus (basonym) W 25, X54967, B.globisp2 | ATCC
23301 | CCM 2119 | DSM 4, X68415, B.globisp3 | NCIB 11434, X60644, B.globispr
Sporosarcina halophila VP Claus et al. 1984 -> Halobacillus halophilus 3 | ATCC
35676 | DSM 2266
Sporosarcina pasteurii VP (Miquel 1889) Yoon et al. 2001 407 <- Bacillus pasteurii (ba-
sonym) 22 | ATCC 11859 | CCM 2056 | DSM 33 | NCIMB 8841, X60631, B.pasteuri
| NCTC 4822
Sporosarcina psychrophila VP (Nakamura 1984) Yoon et al. 2001 408 <- Bacillus
psychrophilus (basonym) W16A, X54968, B.psycphi2 | ATCC 23304, X60634,
B.psycphil | CCM 2117 | DSM 3 | IAM 12468, D16277 | NRRL NRS 1530
Family VII. "Sporolactobacillaceae"
Genus I. Sporolactobacillus AL
Sporolactobacillus inulinus AL (T) (Kitahara and Suzuki 1963) Kitahara and Lai 1967 EU
| ATCC 15538, M58838, Spl.inulin | CIP 103279 | DSM 20348 | IAM 12543 | NBRC
13595 | JCM 6014, D16283, Spl.inuli2 | NCIMB 9743

Sporolactobacillus kofuensis VP Yanagida et al. 1997 M-19 | JCM 3419 | LMG 18786
Sporolactobacillus lactosus VP Yanagida et al. 1997 X1-1 | JCM 9690
Sporolactobacillus nakayamae subsp. nakayamae VP Yanagida et al. 1997 M-114 |
DSM 11696 | JCM 3514
Sporolactobacillus nakayamae subsp. racemicus VP Yanagida et al. 1997 M-17 | JCM
3417 | LMG 18785
Sporolactobacillus terrae VP Yanagida et al. 1997 M-116, D16289, Spl.racmi3 | DSM
11697 | JCM 3516
Genus II. Marinococcus VP
Marinococcus halophilus VP (T) (Novitsky and Kushner 1976) Hao et al. 1985 <-
Planococcus halophilus (basonym) HK 718 | ATCC 27964 | CCM 2706 | DSM
20408, X90835, Mrc.halop2 | IAM 12844 | JCM 2479 | NRCC 14033
Marinococcus albus VP Hao et al. 1985 HK 733 | CCM 3517 | DSM 20748, X90834,
Mrc.albus1 | IAM 12845 | JCM 2574
Marinococcus hispanicus VP Marquez et al. 1990 -> Salinicoccus hispanicus J-82 |
ATCC 49259 | CCM 4148 | DSM 5352, AY028927
Family VIII. "Staphylococcaceae"
Genus I. Staphylococcus AL
40 4
40 5
40 6
40 7
40 8
186
Staphylococcus aureus subsp. aureus AL (T) Rosenbach 1884 533 R4 | ATCC 12600,
D83357, Stp.aure10 | ATCC 12600, L36472, Stp.aureu4 | ATCC 12600, L37597,
Stp.aureu5 | ATCC 12600, X68417, Stp.aureus | CCM 885 | DSM 20231 | NCDO
949, X70648, Stp.aureu2 | NCTC 8532
Staphylococcus aureus subsp. anaerobius VP De La Fuente et al. 1985 MVF-7 | ATCC
35844, D83355, Stp.aureu8 | DSM 20714
Staphylococcus arlettae VP Schleifer et al. 1985 BP47 | ATCC 43957, AB009933,
Stp.arlet2 | DSM 20672
Staphylococcus auricularis VP Kloos and Schleifer 1983 WK 811M | ATCC 33753,
D83358, Stp.auric4 | ATCC 33753, L37598, Stp.auric3 | DSM 20609
Staphylococcus capitis subsp. capitis AL Kloos and Schleifer 1975 LK 499 | ATCC
27840, L37599, Stp.capit2 | CCM 2734 | DSM 20326
Staphylococcus capitis subsp. urealyticus VP Bannerman and Kloos 1991 MAW 8436 |
ATCC 49326, AB009937, Stp.capit3 | DSM 6717
Staphylococcus caprae VP Devriese et al. 1983 143.22 | ATCC 35538, AB009935,
Stp.capra2 | CCM 3573 | DSM 20608, Y12593, Stp.capra3
Staphylococcus carnosus subsp. carnosus VP Schleifer and Fischer 1982 361 | ATCC
51365, AB009934, Stp.carno2 | DSM 20501
Staphylococcus carnosus subsp. utilis VP Probst et al. 1998 LTH 3728 | SK 11 | DSM
11676 | JCM 6067
Staphylococcus caseolyticus VP Schleifer et al. 1982 -> Macrococcus caseolyticus
ATCC 13548, D83359, Mac.caseo2 | ATCC 13548, Y15711, Mac.caseol | DSM
20597
Staphylococcus chromogenes VP (Devriese et al. 1978) Hajek et al. 1987 <- Staphy-
lococcus hyicus subsp. chromogenes (basonym) 1462 | ATCC 43764, D83360,
Stp.chromo | CCM 3387 | DSM 20454 | NCTC 10530
Staphylococcus cohnii subsp. cohnii AL Schleifer and Kloos 1975 GH 137 | ATCC
29974, D83361, Stp.cohni2 | CCM 2736 | DSM 20260
Staphylococcus cohnii subsp. urealyticus VP Kloos and Wolfshohl 1991 CK27 | ATCC
49330, AB009936, Stp.cohni3 | DSM 6718
Staphylococcus condimenti VP Probst et al. 1998 F-2 | LTH 3734 | DSM 11674, Y15750,
Stp.cndmnt, Y15750, Stp.cndmnt | JCM 6074
Staphylococcus delphini VP Varaldo et al. 1988 Heidy | ATCC 49171, AB009938,
Stp.delphn | DSM 20771
Staphylococcus epidermidis AL (Winslow and Winslow 1908) Evans 1916 Fussel | ATCC
14990, D83363, Stp.epide9 | ATCC 14990, L37605, Stp.epide5 | CCM 2124 | DSM
20044
Staphylococcus equorum VP Schleifer et al. 1985 PA231 | ATCC 43958, AB009939,
Stp.equor2 | ATCC 43958, AF041363, Stp.equor3 | DSM 20674, AF041363,
Stp.equor3
Staphylococcus felis VP Igimi et al. 1989 GD521 | SG521 | ATCC 49168, D83364, Stp.fe-
lis1 | DSM 7377 | JCM 7469
Staphylococcus ?eurettii VP Vernozy-Rozand et al. 2000 241 | CIP 106114 | DSM 13212
Staphylococcus gallinarum VP Devriese et al. 1983 VIII1 | ATCC 35539, D83366,
Stp.gallin | CCM 3572 | DSM 20610
Staphylococcus haemolyticus AL Schleifer and Kloos 1975 SM 131 | ATCC 29970,
L37600, Stp.haemo3 | ATCC 29970, D83367, Stp.haemo4 | CCM 2737, X66100,
Stp.haemo2 | DSM 20263
Staphylococcus hominis subsp. hominis AL Kloos and Schleifer 1975 emend. Kloos et
al. 1998 DM 122 | ATCC 27844, L37601, Stp.homin3 | DSM 20328, X66101,
Stp.homin2
Staphylococcus hominis subsp. novobiosepticus VP Kloos et al. 1998 R22 | ATCC
700236
Staphylococcus hyicus subsp. hyicus AL (Sompolinsky 1953) Devriese et al. 1978 1 |
ATCC 11249, D83368, Stp.hyicus | CCM 2368 | DSM 20459 | NCTC 10350
187
Staphylococcus hyicus subsp. chromogenes AL Devriese et al. 1978 -> Staphylococcus

chromogenes MAFF911474, D83360 | ATCC 43764 | CCM 3387 | DSM 20454 |
NCTC 10530
Staphylococcus intermedius AL Hajek 1976 ATCC 29663, D83369, Stp.intme2 | CCM
5739 | DSM 20373 | H11 | NCTC 11048
Staphylococcus kloosii VP Schleifer et al. 1985 SC210 | ATCC 43959, AB009940,
Stp.kloos2 | DSM 20676
Staphylococcus lentus VP (Kloos et al. 1967) Schleifer et al. 1983 <- Staphylococcus
sciuri subsp. lentus (basonym) K21 | ATCC 29070, D83370, Stp.lentus | DSM
20352
Staphylococcus lugdunensis VP Freney et al. 1988 N860297 | ATCC 43809, AB009941,
Stp.lugdu2 | DSM 4804
Staphylococcus lutrae VP Foster et al. 1997 M340/94/1 | DSM 10244 | DSM 10244,
X84731, Stp.lutrae
Staphylococcus muscae VP Hjek et al. 1992 MB4, S83566, Stp.muscae | ATCC 49910
| CCM 4175, S83566, Stp.muscae | DSM 7068
Staphylococcus nepalensis NP Spergser et al. 2003 CCM 7045 | CW1, AJ517414 | DSM
15150
Staphylococcus pasteuri VP Chesneau et al. 1993 BM9357 | ATCC 51129, AB009944,
Stp.pasteu | ATCC 51129, AF041361, Stp.paste2 | CCM 4389 | DSM 10656
Staphylococcus piscifermentans VP Tanasupawat et al. 1992 SK03, Y15754, Stp.pisci2 |
ATCC 51136, AB009943, Stp.piscif | DSM 7373 | JCM 6057 | NCIMB 13277 | NRIC
1817 | TISTR 824
Staphylococcus pulvereri VP Zakrzewska-Czerwinska et al. 1995 = Staphylococcus vi-
tulinus (senior heterotypic synonym) NT215, U12764, Stp.pulver | ATCC 51698,
AB009942, Stp.pulve2 | DSM 9930 | PCM 2443
Staphylococcus saccharolyticus VP (Foubert and Douglas 1948) Kilpper-Blz and
Schleifer 1984 <- Peptococcus saccharolyticus (basonym) S1 | ATCC 14953,
L37602, Stp.sacly2 | DSM 20359
Staphylococcus saprophyticus subsp. saprophyticus AL (Fairbrother 1940) Shaw et al.
1951 S-41 | ATCC 15305, D83371, Stp.sapro4 | ATCC 15305, L37596, Stp.sapro3
| CCM 883 | DSM 20229 | NCIB 8711 | NCTC 7292
Staphylococcus saprophyticus subsp. bovis VP Hjek et al. 1996 KV 12 | CCM 4410

Staphylococcus schleiferi subsp. schleiferi VP Freney et al. 1988 N850274 | ATCC
43808 | DSM 4807 | DSM 4807, S83568, Stp.schlei
Staphylococcus schleiferi subsp. coagulans VP Igimi et al. 1990 GA211 | ATCC 49545,
AB009945, Stp.schle5 | CIP 104370 | DSM 6628 | JCM 7470
Staphylococcus sciuri subsp. sciuri AL Kloos et al. 1976 emend. Kloos et al. 1997 SC
116 | ATCC 29062 | DSM 20345, AJ421446
Staphylococcus sciuri subsp. carnaticus VP Kloos et al. 1997 DD 791 | ATCC 700058
Staphylococcus sciuri subsp. lentus AL Kloos et al. 1976 -> Staphylococcus lentus
K21 | ATCC 29070, D83370, Stp.lentus | DSM 20352
Staphylococcus sciuri subsp. rodentium VP Kloos et al. 1997 DD 4761 | R1-33 | ATCC
700061
Staphylococcus simulans AL Kloos and Schleifer 1975 MK 148 | ATCC 27848, D83373,
Stp.simuln | CCM 2705 | DSM 20322
Staphylococcus succinus VP Lambert et al. 1998 AMG-D1, AF004220, Stp.succin |
ATCC 700337
Staphylococcus succinus subsp. succinus VP Lambert et al. 2003 AMG-D1, AF004220
| ATCC 700337
Staphylococcus succinus subsp. casei VP Place et al. 2003 SB72, AJ320272 | CIP
107658 | DSM 15096
Staphylococcus vitulinus VP Webster et al. 1994 = Staphylococcus pulvereri (junior het-
erotypic synonym) DD 756 | ATCC 51145, AB009946, Stp.vitulu
188
Staphylococcus warneri AL Kloos and Schleifer 1975 AW 25 | ATCC 27836, L37603,

Stp.warne2 | CCM 2730 | DSM 20316
Staphylococcus xylosus AL Schleifer and Kloos 1975 KL 162 | ATCC 29971, D83374,
Stp.xylos2 | CCM 2738 | DSM 20266
Genus II. Gemella AL
Gemella bergeri VP Collins et al. 1998 617-93, Y13365 | CCUG 37817
Gemella cuniculi VP Hoyles et al. 2000 M60449/99/1, AJ251987 | CCUG 42726 | CIP
106481
Gemella haemolysans AL (Thjotta and Boe 1938) Berger 1960 ATCC 10379, L14326,
Gem.haemo2 | ATCC 10379, M58799, Gem.haemol | NCTC 5414
Gemella morbillorum VP (Prevot 1933) Kilpper-Blz and Schleifer 1988 <- Streptococ-
cus morbillorum (basonym) 2917B | ATCC 27824, L14327, Gem.morbil | DSM
20572 | VPI 5424
Gemella palaticanis VP Collins et al. 1999 M663-98-1 | CCUG 39489, Y17280
Gemella sanguinis VP Collins et al. 1999 2045-94, Y13364, Gem.sangui | CCUG 37820
Genus III. Jeotgalicoccus VP
Jeotgalicoccus halotolerans VP (T) Yoon et al. 2003 YKJ-101, AY028925 | JCM 11198 |
KCCM 41448
Jeotgalicoccus psychrophilus VP Yoon et al. 2003 YKJ-115, AY028926 | JCM 11199 |
KCCM 41449
Genus IV. Macrococcus VP
Macrococcus equipercicus VP (T) Kloos et al. 1998 DD 9350 | ATCC 51831
Macrococcus bovicus VP Kloos et al. 1998 DD 4516 | ATCC 51825
Macrococcus carouselicus VP Kloos et al. 1998 DD 9348 | ATCC 51828
Macrococcus caseolyticus VP (Schleifer et al. 1982) Kloos et al. 1998 <- Staphylococ-
cus caseolyticus (basonym) DD 4508 | ATCC 13548, D83359, Mac.caseo2 | ATCC
13548, Y15711, Mac.caseol | DSM 20597
Genus V. Salinicoccus VP
Salinicoccus roseus VP (T) Ventosa et al. 1990 9 | ATCC 49258 | CCM 3516 | DSM 5351,
X94559, Sc.roseus2
Salinicoccus alkaliphilus VP Zhang et al. 2002 T8, AF275710 | AS 1.2691 | JCM 11311
Salinicoccus hispanicus VP (Marquez et al. 1990) Ventosa et al. 1993 <- Marinococcus
hispanicus (basonym) J-82 | ATCC 49259 | CCM 4148 | DSM 5352, AY028927
Family IX. "Thermoactinomycetaceae" 409
Genus I. Thermoactinomyces AL
Thermoactinomyces vulgaris AL (T) Tsilinsky 1899 ATCC 43649 | CBS 505.77 | CUB 250
| DSM 43016 | NBRC 13606 | IMET 9711 | JCM 3162 | KCC A-0162 | NCIB 11364,
M77491, Ta.vulgari
Thermoactinomyces candidus AL Kurup et al. 1975 T-106 | ATCC 27868 | DSM 43352 |
KCTC 9557, AF138732
Thermoactinomyces dichotomicus AL (Krassilnikov and Agre 1964) Cross and Goodfel-
low 1973 N1595 | ATCC 49854 | CUB 581 | INMI 114 | NCIMB 10211, L16902,
Ta.dichoto
Thermoactinomyces intermedius VP Kurup et al. 1981 T-323 | ATCC 33205, AJ251775
| DSM 43846
Thermoactinomyces peptonophilus AL Nonomura and Ohara 1971 ATCC 27302 | KCTC

9740, AF138735
Thermoactinomyces putidus VP Lacey and Cross 1989 KCTC 3666, AF138736 | NCIB
12324
Thermoactinomyces sacchari AL Lacey 1971 A 978 | ATCC 27375 | CBS 701.70 | CUB
618 | DSM 43356, AJ251779 | NBRC 13920 | IMET 9713, KCTC 9790, AF138737
| NCIB 10486 | NCTC 10721
Thermoactinomyces thalpophilus VP Lacey and Cross 1989 ATCC 49855 | CBS 319.66
| CUB 808 | DSM 43354 | KCTC 9789, AF138738 | NBRC 15852 | JCM 3217
40 9
L udwig indica tes tha t within the ARB tree, the Thermoa ctino my cet ace ae rep re se nts dee p line age w ith in t he B ac illales .
189
Family X. "Turicibacteraceae" 410

Genus I. Turicibacter VP (T)
Turicibacter sanguinis VP Bosshard et al. 2002 MOL361, AF349724 | DSM 14220 |
NCCB 100008
Order II. "Lactobacillales"
Family I. Lactobacillaceae AL
Genus I. Lactobacillus AL (T)
Lactobacillus delbrueckii subsp. delbrueckii AL (T) (Leichmann 1896) Beijerinck 1901
730 | ATCC 9649 | DSM 20074, M58814, L.delbruck | NCDO 213, X52654, L.del-
bruc2 | NCIB 8130
Lactobacillus delbrueckii subsp. bulgaricus VP (Orla-Jensen 1919) Weiss et al. 1984
<- Lactobacillus bulgaricus (basonym) Lb.14 | ATCC 11842, AY050171 | DSM
20081 | IMET 10708 | JCM 1002, AB007908, L.delbruc3 | LMG 6901 | NCDO 1489
Lactobacillus delbrueckii subsp. lactis VP (Orla-Jensen 1919) Weiss et al. 1984 <- Lac-
tobacillus lactis (basonym) L 110 | ATCC 12315 | DSM 20072, M58823, L.del-
bruc4 | NCDO 1438
Lactobacillus acetotolerans VP Entani et al. 1986 NBI 3014 | ATCC 43578 | DSM 20749,
M58801, L.acetoler | JCM 3825
Lactobacillus acidipiscis VP Tanasupawat et al. 2000 FS60-1, AB023836 | PCU 207 |
NRIC 0300 | HSCC 1411 | JCM 10692 | TISTR 1386
Lactobacillus acidophilus AL (Moro 1900) Hansen and Mocquot 1970 Scav | ATCC
4356, M58802, L.acidophi | DSM 20079, M58802, L.acidophi | IMET 10710 |
NCDO 1748 | NCIB 8690, X61138, L.acidoph1
Lactobacillus agilis VP Weiss et al. 1982 262 | DSM 20509, M58803, L.agilis | NCIB
11716
Lactobacillus algidus VP Kato et al. 2000 M6A9 | JCM 10491, AB033209
Lactobacillus alimentarius VP Reuter 1983 R 13 | ATCC 29643 | DSM 20249, M58804,
L.alimenta
Lactobacillus amylolyticus VP Bohak et al. 1999 LA 5, Y17361, L.amylytic | DSM
11664
Lactobacillus amylophilus VP Nakamura and Crowell 1981 ATCC 49845 | DSM 20533,
M58806 | NRRL B-4437
Lactobacillus amylovorus VP Nakamura 1981 ATCC 33620 | DSM 20531, M58805,
L.amyvorus | NRRL B-4540
Lactobacillus animalis VP Dent and Williams 1983 1535 | PPI/1535 | ATCC 35046 | DSM
20602, M58807, L.animalis | NCDO 2425, X61133, L.animali1
Lactobacillus arizonensis VP Swezey et al. 2000 DSM 13273 | NRRL B-14768,
AF093757
Lactobacillus aviarius subsp. aviarius VP Fujisawa et al. 1986 75 | ATCC 43234 | DSM
20655, M58808, L.aviarius
Lactobacillus aviarius subsp. araf?nosus VP Fujisawa et al. 1986 ML2 | ATCC 43235 |
DSM 20653
Lactobacillus bavaricus VP Stetter and Stetter 1980 = Lactobacillus sakei (senior het-
erotypic synonym) ATCC 31063 | DSM 20269
Lactobacillus bifermentans VP Kandler et al. 1983 N2 | ATCC 35409 | DSM 20003,
M58809, L.bifermen | JCM 1094, D31680, L.biferme2 | LMG 9845
Lactobacillus brevis AL (Orla-Jensen 1919) Bergey et al. 1934 Bb14 | ATCC 14869,
M58810, L.brevis | DSM 20054 | IMET 10711 | NCDO 1749, X61134, L.brevis1
Lactobacillus buchneri AL (Henneberg 1903) Bergey et al. 1923 ATCC 4005 | CCM
1819 | DSM 20057, M58811, L.buchneri | IMET 10692 | NCDO 110, X61139,
L.buchner1 | NCIB 8007
41 0
Th is fam ily was cre ated to a ccomm oda te Tu ricibacter san guinis wh ic h wa s re ported by Bo ss hard et a l. as being equidista nt from P aeni-
ba cillus a nd G eme lla.
190
Lactobacillus bulgaricus AL (Orla-Jensen 1919) Rogosa and Hansen 1971 -> Lacto-
bacillus delbrueckii bulgaricus ATCC 11842, AY050171 | DSM 20081 | IMET
10708
Lactobacillus carnis VP Shaw and Harding 1986 = Lactobacillus piscicola (senior het-
erotypic synonym) LV61 | ATCC 43225 | NCDO 2764 | DSM 20722, M58812
Lactobacillus casei subsp. casei AL (Orla-Jensen 1916) Hansen and Lessel 1971 ATCC
393, D16551, L.casei_ca | ATCC 393, M23928, L.casei | DSM 20011 | NCDO 161,
D16551, L.casei_ca | NCDO 161, X61135, L.casei1
Lactobacillus casei subsp. alactosus AL Mills and Lessel 1973 = Lactobacillus paraca-
sei subsp. paracasei (senior heterotypic synonym) ATCC 27216, D16548, L.prca-
sei2 | DSM 20020
Lactobacillus casei subsp. pseudoplantarum AL Abo-Elnaga and Kandler 1965 =
Lactobacillus paracasei subsp. paracasei (senior heterotypic synonym) ATCC
25598, D16549, L.prcasei3 | DSM 20008 | NCIB 9713
Lactobacillus casei subsp. rhamnosus AL Hansen 1968 -> Lactobacillus rhamnosus
ATCC 7469, D16552, L.rhamnos2 | CCM 1825 | DSM 20021, M58815, L.rhamnosu
| IMET 10691 | NCDO 243, D16552, L.rhamnos2 | NCIB 6375
Lactobacillus casei subsp. tolerans AL Abo-Elnaga and Kandler 1965 -> Lactobacillus
paracasei subsp. tolerans 27211 | ATCC 25599, D16550, L.prcas_to | DSM 20258
| NCIB 9709
Lactobacillus catenaformis AL (Eggerth 1935) Moore and Holdeman 1970 1871 | ATCC
25536, M23729, L.catenafo | DSM 20559 | VPI 2933
Lactobacillus cellobiosus AL Rogosa et al. 1953 19 LC 3 | ATCC 11739 | CECT 562,
AJ575812 | DSM 20055 | NCDO 928
Lactobacillus coleohominis VP Nikolaitchouk et al. 2001 CIP 106820 | CCUG 44007 |
DSM 14060
Lactobacillus collinoides AL Carr and Davies 1972 Cl3a | ATCC 27612 | DSM 20515
| JCM 1123, AB005893, L.collinoi | JCM 1123, D31683, L.collino2 | LMG 9149 |
NCIB 10925
Lactobacillus confusus AL (Holzapfel and Kandler 1969) Sharpe et al. 1972 -> Weis-
sella confusa 548-D | ATCC 10881 | DSM 20196, M23036, Wei.confus | NCDO
1586, X52567, Wei.confu2 | NCIB 9311
Lactobacillus coryniformis subsp. coryniformis AL Abo-Elnaga and Kandler 1965 34 |
ATCC 25602 | DSM 20001, M58813, L.corynifo | NCIB 9711
Lactobacillus coryniformis subsp. torquens AL Abo-Elnaga and Kandler 1965 30 | ATCC
25600 | CECT 4129, AJ575741 | DSM 20004 | NCIB 9712
Lactobacillus crispatus AL (Brygoo and Aladame 1953) Moore and Holdeman 1970
ATCC 33820 | DSM 20584, Y17362, L.crispat2 | VPI 3199
Lactobacillus curvatus subsp. curvatus AL (Troili-Petersson 1903) Abo-Elnaga and Kan-
dler 1965 emend. Klein et al. 1996 1 | ATCC 25601 | DSM 20019 | NCIB 9710
Lactobacillus curvatus subsp. melibiosus VP Torriani et al. 1996 R 60 | CCUG 34545,
AY204889
Lactobacillus cypricasei VP Lawson et al. 2001 LMK3, AJ251560 | CCUG 42961 | CIP
106393
Lactobacillus diolivorans VP Krooneman et al. 2002 JKD6, AF264701 | DSM 14421 |
LMG 19667
Lactobacillus divergens VP Holzapfel and Gerber 1984 -> Carnobacterium divergens
66 | ATCC 35677 | DSM 20623, M58816, Crn.diverg | NCDO 2763
Lactobacillus durianis VP Leisner et al. 2002 CCUG 45405 | LMG 19193, AJ315640
Lactobacillus equi VP Morotomi et al. 2002 YIT 0455, AB048833 | ATCC BAA-261 |
JCM 10991
Lactobacillus farciminis VP Reuter 1983 Rv4 | ATCC 29644, M58817, L.farcimin | DSM
20184 | IMET 11462 | NCIB 11717
191
Lactobacillus ferintoshensis VP Simpson et al. 2002 411 R7-84, AF275311 | CIP 106749
412
Lactobacillus fermentum AL Beijerinck 1901 Bb28 | ATCC 14931, M58819, L.fermentm

| DSM 20052 | NCDO 1750, X61142, L.ferment1
Lactobacillus fornicalis VP Dicks et al. 2000 TV 1018, Y18654 | ATCC 70934 | DSM
13171
Lactobacillus fructivorans AL Charlton et al. 1934 ATCC 8288 | DSM 20203, M58818,
L.fructivo | DSM 20203, X76330, L.fructiv2 | IMET 11463 | NCIB 8039
Lactobacillus fructosus AL Kodama 1956 -> Leuconostoc fructosum 353 | ATCC 13162
| DSM 20349 | NBRC 3516 | NCDO 2345, X61140, L.fructosu | NCINMB 10784
Lactobacillus frumenti VP Mller et al. 2000 TMW 1.666, AJ250074 | DSM 13145 |
LMG 19473
Lactobacillus fuchuensis VP Sakala et al. 2002 B5M10, AB063479 | JCM 11249 | DSM
14340
Lactobacillus gallinarum VP Fujisawa et al. 1992 ATCC 33199, AJ242968 | DSM 10532
| NCFB 2235 | VPI 1294
Lactobacillus gasseri VP Lauer and Kandler 1980 63 AM | ATCC 33323 | DSM 20243,
M58820, L.gasseri | NCDO 2233, X61137, L.gasseri1 | NCIB 11718
Lactobacillus graminis VP Beck et al. 1989 G90 (1) | ATCC 51150 | CIP 105164 | DSM
20719 | NCIB 12808
Lactobacillus halotolerans VP Kandler et al. 1983 -> Weissella halotolerans G1 | R61
| ATCC 35410 | DSM 20190, M23037, Wei.haltol
Lactobacillus hamsteri VP Mitsuoka and Fujisawa 1988 Ha5F1 | ATCC 43851 | DSM
5661, AJ306298 | JCM 6256
Lactobacillus helveticus AL (Orla-Jensen 1919) Bergey et al. 1925 Lh12 | ATCC 15009
| DSM 20075 | IMET 10709 | NCDO 2712, X61141, L.helvetic
Lactobacillus heterohiochii AL Kitahara et al. 1957 ATCC 15435

Lactobacillus hilgardii AL Douglas and Cruess 1936 9 | ATCC 8290 | DSM 20176,
M58821, L.hilgardi | NCDO 264 | NCIB 8040
Lactobacillus homohiochii AL Kitahara et al. 1957 H42 | ATCC 15434 | DSM 20571 |
JCM 1199
Lactobacillus iners VP Falsen et al. 1999 CCUG 28746, Y16329
Lactobacillus ingluviei VP Baele et al. 2003 KR3, AF333975 | CCUG 45722 | LMG
20380
Lactobacillus intestinalis VP (ex Hemme 1974) Fujisawa et al. 1990 Th4 | ATCC 49335
| DSM 6629, AJ306299 | JCM 7548
Lactobacillus jensenii AL Gasser et al. 1970 62G | ATCC 25258, AF243176 | DSM 20557
Lactobacillus johnsonii VP Fujisawa et al. 1992 ATCC 33200, AJ002515, L.johnsoni |
DSM 10533 | NCFB 2241 | VPI 7960
Lactobacillus kandleri VP Holzapfel and van Wyk 1983 -> Weissella kandleri L250 |
ATCC 51149 | DSM 20593, M23038, Wei.kandlr | NCFB 2753
Lactobacillus ke?ranofaciens VP Fujisawa et al. 1988 WT-2B | ATCC 43761 | DSM
5016 | JCM 6985 | LMG 19149, AJ575259
Lactobacillus ke?ranofaciens subsp. ke?ranofaciens VP (Fujisawa et al. 1988) Van-
canneyt et al. 2004 <- Lactobacillus ke?ranofaciens (basonym) LMG 19149,
AJ575259 | R-14703, AJ575260
Lactobacillus ke?ranofaciens subsp. ke?rgranum VP (Takizawa et al. 1994) Vancanneyt
et al. 2004 <- Lactobacillus ke?rgranum (basonym) LMG 15132, AJ575261 |
R-12929, AJ575262
Lactobacillus ke?rgranum VP Takizawa et al. 1994 -> GCL 1701 | DSM 10550 | JCM
8572
411
41 2
192
Lactobacillus ke?ri VP Kandler and Kunath 1983 A/K | ATCC 35411 | DSM 20587
Lactobacillus kimchii VP Yoon et al. 2000 MT-1077, AF183558 | JCM 10707 | KCTC
8903P
Lactobacillus kitasatonis VP Mukai et al. 2003 JCM 1039, AB107638 | KCTC 3155
Lactobacillus kunkeei VP Edwards et al. 1998 YH-15, Y11374 | ATCC 700308 | DSM
12361
Lactobacillus lactis AL (Orla-Jensen 1919) Bergey et al. 1934 -> Lactobacillus del-
brueckii subsp. lactis ATCC 12315 | DSM 20072, M58823, L.delbruc4
Lactobacillus leichmannii AL (Henneberg 1903) Bergey et al. 1923 ATCC 4797
Lactobacillus lindneri VP Back et al. 1997 KPA | DSM 20690, X95421, L.lindneri
Lactobacillus malefermentans VP Farrow et al. 1989 D2 MF1 | ATCC 49373 | DSM 5705
| NCDO 1410
Lactobacillus mali AL Carr and Davies 1970 = Lactobacillus yamanashiensis mali (ju-
nior homotypic synonym) = Lactobacillus yamanashiensis yamanashiensis (junior
heterotypic synonym) -> Lactobacillus yamanashiensis mali J12 | ATCC 27053 |
DSM 20444, M58824, L.mali | NCIB 10560
Lactobacillus maltaromicus AL Miller et al. 1974 MX 5 | ATCC 27865 | DSM 20342,
M58825, L.maltarom | JCM 1154, X54420, L.maltaro2 | LMG 6903
Lactobacillus manihotivorans VP Morlon-Guyot et al. 1998 OND 32, AF000162,
L.manihotv | LMG 18010
Lactobacillus mindensis VP Ehrmann et al. 2003 TMW 1.80, AJ313530 | DSM 14500 |
LMG 21508
Lactobacillus minor VP Kandler et al. 1983 -> Weissella minor 3 | ATCC 35412 | DSM
20014, M23039, Wei.minor
Lactobacillus minutus AL (Hauduroy et al. 1937) Moore and Holdeman 1972 -> Atopo-
bium minutum ATCC 33267 | DSM 20586 | VPI 9428
Lactobacillus mucosae VP Roos et al. 2000 S32, AF126738
Lactobacillus murinus VP Hemme et al. 1982 313 | ATCC 35020 | CNRZ 220 | DSM
20452, M58826, L.murinus
Lactobacillus nagelii VP Edwards et al. 2000 LuE10 | ATCC 700692, Y17500
Lactobacillus oris VP Farrow and Collins 1988 5A1 | ATCC 49062 | DSM 4864, X94229,
L.oris2 | NCDO 2160, X61131, L.oris | NCIB 8831
Lactobacillus panis VP Wiese et al. 1996 ST1 | DSM 6035, X94230, L.panis1
Lactobacillus pantheris VP Liu and Dong 2002 A24-2-1 | AS 1.2826 | LMG 21017,
AF413523
Lactobacillus parabuchneri VP Farrow et al. 1989 ATCC 49374 | DSM 5707 | LMG
11457 , AY026751 | NCDO 2748 | NCIB 8838
Lactobacillus paracasei subsp. paracasei VP Collins et al. 1989 = Lactobacillus ca-
sei subsp. alactosus (junior heterotypic synonym) = Lactobacillus casei subsp.
pseudoplantarum (junior heterotypic synonym) RO94 | ATCC 25302 | DSM 5622
| NBRC 15889 | JCM 8130, D79212, L.prcasei | NCDO 151
Lactobacillus paracasei subsp. tolerans VP (Abo-Elnaga and Kandler 1965) Collins et

al. 1989 <- Lactobacillus casei subsp. tolerans (basonym) 27211 | ATCC 25599 |
DSM 20258 | JCM 1171, D16550, L.prcas_to | NCFB 2774 | NCIB 9709
Lactobacillus paracollinoides VP Suzuki et al. 2004 LA2, E16651 | DSM 15502 | JCM
11969
Lactobacillus parake?ri VP Takizawa et al. 1994 GCL 1731 | DSM 10551 | LMG 15133,
AY026750 | NBRC 15890 | JCM 8573
Lactobacillus paralimentarius VP Cai et al. 1999 TB 1, AB018528 | DSM 13238,
AJ417500 | JCM 10415
Lactobacillus paraplantarum VP Curk et al. 1996 CST 10961 | CIP 104668 | CNRZ 1885
| DSM 10667, AJ306297, AJ306297
Lactobacillus pentosus VP Zanoni et al. 1987 124-2 | ATCC 8041 | DSM 20314 | JCM
1558, D79211 | NCDO 363 | NCIB 8026
Lactobacillus perolens VP Back et al. 2000 L 532, Y19167 | LMG 18936 | DSM 12744
193
Lactobacillus piscicola VP Hiu et al. 1984 -> Carnobacterium piscicola B270 = Lac-
tobacillus carnis (junior heterotypic synonym) | ATCC 35586 | DSM 20730 | NCDO
2762
Lactobacillus plantarum AL (Orla-Jensen 1919) Bergey et al. 1923 Lp 39 | ATCC 14917
| DSM 20174 | JCM 1149, D79210, L.plantar3 | LMG 6907 | NCDO 1752, X52653,
L.plantar2
Lactobacillus pontis VP Vogel et al. 1994 LTH 2587, X76329, L.pontis | DSM 8475 |
LMG 14187
Lactobacillus psittaci VP Lawson et al. 2001 CCUG 42378, AJ272391 | CIP 106492
Lactobacillus reuteri VP Kandler et al. 1982 F 275 | ATCC 23272 | DSM 20016, L23507,
L.reuteri | DSM 20016, X76328, L.reuteri3
Lactobacillus rhamnosus VP (Hansen 1968) Collins et al. 1989 <- Lactobacillus casei
subsp. rhamnosus (basonym) ATCC 7469 | CCM 1825 | DSM 20021, M58815,
L.rhamnosu | NCDO 243 | NCIB 6375
Lactobacillus rimae VP Olsen et al. 1991 -> Atopobium rimae ATCC 49626,
AF292371 | DSM 7090 | VPI D140H-11A
Lactobacillus rogosae AL Holdeman and Moore 1974 VPI C37-38
Lactobacillus ruminis AL Sharpe et al. 1973 RFl | ATCC 27780 | DSM 20403, M58828,
L.ruminis
Lactobacillus sakei subsp. sakei AL Katagiri et al. 1934 emend. Klein et al. 1996 =
Lactobacillus bavaricus (junior heterotypic synonym) ATCC 15521 | DSM 20017,
M58829, L.sakeisak
Lactobacillus sakei subsp. carnosus VP Torriani et al. 1996 R 14b/a | CCUG 31331,
AY204892
Lactobacillus salivarius subsp. salivarius AL Rogosa et al. 1953 ATCC 11741,
AF089108, L.salivar2 | DSM 20555 | H066 | NCDO 929
Lactobacillus salivarius subsp. salicinius AL Rogosa et al. 1953 ATCC 11742 | DSM
20554, M59054, L.salivari | HO268 | NCDO 1555
Lactobacillus sanfranciscensis VP Weiss and Schillinger 1984 L-12 | ATCC 27651,
X76327, L.sanfran2 | DSM 20451 | NRRL B-3934
Lactobacillus sharpeae VP Weiss et al. 1982 71 | ATCC 49974 | DSM 20505, M58831,
L.sharpeae | JCM 1186 | NCDO 2590 | NCIB 11720
Lactobacillus suebicus VP Kleynmans et al. 1989 I | ATCC 49375 | CCUG 32233,
AJ306403 | DSM 5007
Lactobacillus thermotolerans VP Niamsup et al. 2003 G35, AF317702 | DSM 14792 |
JCM 11425
Lactobacillus trichodes AL Fornachon et al. 1949 ATCC 27394
Lactobacillus uli VP Olsen et al. 1991 -> Olsenella uli ATCC 49627, AY005814,
AF292373 | DSM 7084 | VPI D76D-27C
Lactobacillus vaccinostercus VP Kozaki and Okada 1983 TUA 055B | X-94 | ATCC
33310 | DSM 20634
Lactobacillus vaginalis VP Embley et al. 1989 ATCC 49540 | DSM 5837 | Lac 19 | NCTC
12197, X61136, L.vaginali
Lactobacillus versmoldensis VP Krckel et al. 2003 KU-3, AJ496791 | ATCC BAA-478
| DSM 14857 | NCCB 100034
Lactobacillus viridescens AL Niven and Evans 1957 -> Weissella viridescens S38A |
ATCC 12706 | CCM 56 | DSM 20410, M23040, Wei.viride | NCDO 1655, X52568,
Wei.virid1 | NCIB 8965
Lactobacillus vitulinus AL Sharpe et al. 1973 RL 2 | ATCC 27783, M23727, L.vitulinu |
DSM 20405, M23727, L.vitulinu | JCM 8228
Lactobacillus xylosus AL Kitahara 1938 = Lactococcus lactis subsp. lactis (senior het-
erotypic synonym) ATCC 15577
Lactobacillus yamanashiensis subsp. yamanashiensis VP Nonomura 1983 = Lacto-
bacillus mali (senior heterotypic synonym) 239 | ATCC 27304
194
Lactobacillus yamanashiensis subsp. mali VP Nonomura 1983 = Lactobacillus mali

(senior homotypic synonym) NCIB 10560
Lactobacillus zeae VP Dicks et al. 1996 ATCC 15820, D86516, L.zeae1 | DSM 20178 |
NCIB 9537 | RIA 482
Genus II. Paralactobacillus VP
Paralactobacillus selangorensis VP (T) Leisner et al. 2000 LMG 17710, AF049745
Genus III. Pediococcus AL
Pediococcus damnosus AL (T) Claussen 1903 Be.1 | ATCC 29358 | DSM 20331 | JCM
5886, D87678, Ped.damnos | LMG 11484 | NCDO 1832
Pediococcus acidilactici AL Lindner 1887 B213c | DSM 20284, M58833, Ped.acidil
Pediococcus claussenii VP Dobson et al. 2002 P06 | ATCC BAA-344 | DSM 14800
Pediococcus dextrinicus AL (Coster and White 1964) Back 1978 L95 | ATCC 33087 |
DSM 20335 | JCM 5887, D87679, Ped.dextrn | LMG 10649 | NCDO 1561
Pediococcus halophilus AL Mees 1934 -> Tetragenococcus halophilus TC 1 | ATCC
23315 | DSM 20339, AJ301843 | NCDO 1635
Pediococcus inopinatus VP Back 1988 236b | DSM 20285, AJ271383
Pediococcus parvulus AL Gunther and White 1961 S182 | ATCC 19371 | DSM 20332 |
JCM 5889, D88528, Ped.parvul | LMG 11486 | NCDO 1634 | NCIB 9447
Pediococcus pentosaceus AL Mees 1934 ATCC 33316 | DSM 20336, M58834, Ped.pen-
tos | NCDO 990
Pediococcus urinaeequi VP Garvie 1988 ATCC 29723 | DSM 20341 | NCDO 1636
Family II. "Aerococcaceae"
Genus I. Aerococcus AL
Aerococcus viridans AL (T) Williams et al. 1953 M1 | ATCC 11563, M58797, Aer.virida
| CCM 1914 | DSM 20340 | IAM 13649 | IMET 11154 | NCDO 1225 | NCTC 8251
Aerococcus christensenii VP Collins et al. 1999 CCUG 28831, Y17005

Aerococcus sanguinicola VP Lawson et al. 2001 CCUG 43001, AJ276512 | CIP 106533
Aerococcus urinae VP Aguirre and Collins 1992 DSM 7446 | NCFB 2893, M77819,
Aer.urinae | NCTC 12142
Aerococcus urinaehominis VP Lawson et al. 2001 CCUG 42038b, AJ278341 | CIP
106675
Genus II. Abiotrophia VP
Abiotrophia defectiva VP (T) (Bouvet et al. 1989) Kawamura et al. 1995 <- Streptococcus
defectivus (basonym) SC10 | ATCC 49176, D50541, Abt.defect | CIP 103242 | DSM
9849
Abiotrophia adiacens VP (Bouvet et al. 1989) Kawamura et al. 1995 <- Streptococ-
cus adjacens (basonym) -> Granulicatella adiacens GaD | ATCC 49175, D50540,
Abt.adiacn | CIP 103243 | DSM 9848
Abiotrophia balaenopterae VP Lawson et al. 1999 -> Granulicatella balaenopterae
M1975/96/1 | CCUG 37380, Y16547, Abt.balaen
Abiotrophia elegans VP Roggenkamp et al. 1999 -> Granulicatella elegans B1333,
AF016390, Abt.elegan | DSM 11693, AF016390, Abt.elegan
Genus III. Dolosicoccus VP
Dolosicoccus paucivorans VP (T) Collins et al. 1999 2992-95, AJ012666 | CCUG 39307
Genus IV. Eremococcus VP
Eremococcus coleocola VP (T) Collins et al. 1999 M1832/95/2 | CCUG 38207, Y17780
Genus V. Facklamia VP
Facklamia hominis VP (T) Collins et al. 1997 CCUG 36813 | CCUG 36813, Y10772,
Fac.homini
Facklamia ignava VP Collins et al. 1998 164-97, Y15716 | CCUG 37419 | CIP 105583
Facklamia languida VP Lawson et al. 1999 1144-97, Y18053 | CCUG 37842
Facklamia miroungae VP Hoyles et al. 2001 A/G13/99/2 | CCUG 42728, AJ277381 413 |
CIP 106764
41 3
Ge nBa nk accession num ber not curre ntly va lid.
195
Facklamia sourekii VP Collins et al. 1999 STR 2/84 | CCUG 28783A, Y17312,
Fac.sourek
Facklamia tabacinasalis VP Collins et al. 1999 CCUG 30090, Y17820
Genus VI. Globicatella VP
Globicatella sanguinis VP (T) Collins et al. 1995 1152-78 | ATCC 51173 | DSM 7447 |
NCFB 2835
Globicatella sul?difaciens VP Vandamme et al. 2001 GEM 604 | CCUG 44365 | LMG
18844, AJ297627
Genus VII. Ignavigranum VP
Ignavigranum ruof?ae VP (T) Collins et al. 1999 CCUG 37658, Y16426, Ig.ruof?a
Family III. "Carnobacteriaceae"
Genus I. Carnobacterium VP
Carnobacterium divergens VP (T) (Holzapfel and Gerber 1983) Collins et al. 1987 <- Lac-
tobacillus divergens (basonym) 66 | ATCC 35677 | DSM 20623, M58816, Crn.di-
verg | NCDO 2763, X54270, Crn.diver1
Carnobacterium alterfunditum VP Franzmann et al. 1993 pf4 | ACAM 313 | ATCC 49837
| DSM 5972
Carnobacterium funditum VP Franzmann et al. 1993 pf3, S86170, Crn.fundit | ACAM

312 | ATCC 49836 | DSM 5970, S86170, Crn.fundit
Carnobacterium gallinarum VP Collins et al. 1987 MT44 | ATCC 49517 | DSM 4847 |
NCFB 2766, X54269, Crn.gallin
Carnobacterium inhibens VP Jborn et al. 1999 K1, Z73313 | CCUG 31728
Carnobacterium maltaromaticum VP (Miller et al. 1974) Mora et al. 2003 <- Carnobac-
terium piscicola (basonym) ATCC 27865 | CCUG 30142 | CIP 103135 | DSM 20342
| JCM 1154, X54420 | LMG 6903 | NRRL B-14852
Carnobacterium mobile VP Collins et al. 1987 MT37L | ATCC 40516 | DSM 4848 | NCFB
2765, X54271, Crn.mobile
Carnobacterium piscicola VP (Hiu et al. 1984) Collins et al. 1987 <- Lactobacillus pis-
cicola (basonym) -> Carnobacterium piscicola B270 | ATCC 35586 | DSM 20730
| NCDO 2762, X54268, Crn.pisci1
Carnobacterium viridans VP Holley et al. 2002 MPL-11, AF425608 | ATCC BAA-336

| DSM 14451
Genus II. Agitococcus VP

Agitococcus lubricus VP (T) Franzmann and Skerman 1981 DSM 5822 | UQM 1981
Genus III. Alkalibacterium VP
Alkalibacterium olivapovliticus VP (T) Ntougias and Russel 2001 WW2SN4a,
AF143511 | DSM 13175 | NCIMB 13710
Genus IV. Allofustis VP
Allofustis seminis VP (T) Collins et al. 2003 01-570-1 | CCUG 45438, AJ410303 | CIP
107425
Genus V. Alloiococcus VP
Alloiococcus otitis VP (T) Aguirre and Collins 1992 7760 | DSM 7252 | NCFB 2890,
X59765, Aic.otitis
Genus VI. Desemzia VP
Desemzia incerta VP (T) (Steinhaus 1941) Stackebrandt et al. 1999 <- Brevibacterium
incertum (basonym) ATCC 8363 | DSM 20581, Y14650, Dsz.incert | IMET 11374
| NCIB 9892
Genus VII. Dolosigranulum VP

Dolosigranulum pigrum VP (T) Aguirre et al. 1994 R91/1468 | NCFB 2975, X70907,
Dol.pigrum
Genus VIII. Granulicatella VP
Granulicatella adiacens VP (T) (Bouvet et al. 1989) Collins and Lawson 2000 <-
Abiotrophia adiacens (basonym) GaD | ATCC 49175, D50540 | CIP 103243 | DSM
9848
196
Granulicatella balaenopterae VP (Lawson et al. 1999) Collins and Lawson 2000 <-
Abiotrophia balaenopterae (basonym) M1975/96/1 | CCUG 37380, Y16547
Granulicatella elegans VP (Roggenkamp et al. 1999) Collins and Lawson 2000 <-
Abiotrophia elegans (basonym) B1333, AF016390 | DSM 11693
Genus IX. Isobaculum VP
Isobaculum melis VP (T) Collins et al. 2002 M577-94 | CCUG 37660, AJ302648 | DSM
13760
Genus X. Lactosphaera VP 414
Lactosphaera pasteurii VP (T) (Schink 1985) Janssen et al. 1995 <- Ruminococcus pas-
teurii (basonym) -> Trichococcus pasteurii KoTa2, X87150, Lcs.paster | ATCC
35945 | DSM 2381, L76599, Lcs.paste2
Genus XI. Marinilactibacillus VP
Marinilactibacillus psychrotolerans VP (T) Ishikawa et al. 2003 M13-2, AB083406 |
IAM 14980 | NBRC 100002 | NCIMB 13873 | NRIC 0510
Genus XII. Trichococcus VP
Trichococcus ?occuliformis VP (T) Scheff et al. 1984 Echt, Y17301 | ATCC 51221 | DSM
2094
Trichococcus palustris VP (Zhilina et al. 1997) Jian-Rong et al. 2002 <- Ruminococcus
palustris (basonym) Z-7189 | DSM 9172, AJ296179
Trichococcus pasteurii VP (T) (Schink 1985) Jian-Rong et al. 2002 <- Lactosphaera pas-
teurii (basonym) KoTa2, X87150, Lcs.paster | ATCC 35945 | DSM 2381, L76599,
Lcs.paste2
Family IV. "Enterococcaceae"
Genus I. Enterococcus VP
Enterococcus faecalis VP (T) (Andrewes and Horder 1906) Schleifer and Kilpper-Blz
1984 <- Streptococcus faecalis (basonym) ATCC 19433 | DSM 20478 | JCM 5803,
AB012212, Eco.faeca1 | NCDO 581 | NCIB 775 | NCTC 775
Enterococcus asini VP de Vaux et al. 1998 AS2, Y11621, Eco.asini1 | DSM 11492
Enterococcus avium VP Collins et al. 1984 Guthof E6844 | ATCC 14025 | CIP 103019,
AF133535 | DSM 20679 | IMET 3257 | LMG 10744, AJ301825 | NCDO 2369 | NCTC
9938
Enterococcus canis VP De Graef et al. 2003 CCUG 46666 | LMG 12316, X76177
Enterococcus casseli?avus VP Collins et al. 1984 <- Streptococcus casseli?avus (ba-
sonym) MUTK 20, Y18161 | ATCC 25788 | CCM 2478 | DSM 20680 | NCDO 2372
| NCIB 11449
Enterococcus cecorum VP (Devriese et al. 1983) Williams et al. 1989 <- Streptococcus
cecorum (basonym) A60, Y18355, AF061009 | ATCC 43198 | DSM 20682 | NCDO
2674
Enterococcus columbae VP Devriese et al. 1993 STR 345, X56422, Eco.columb | ATCC
51263 | DSM 7374 | NCIMB 13013, X56422, Eco.columb
Enterococcus dispar VP Collins et al. 1991 E18-1, Y18358, AF061007 | ATCC 51266 |
DSM 6630 | NCFB 2821 | NCIMB 13000
Enterococcus durans VP Collins et al. 1984 = Streptococcus durans (junior homotypic
synonym) 98D | ATCC 19432 | CCM 5612 | CECT 411, AJ420801 | DSM 20633,
AJ276354 | NCDO 596 | NCTC 8307
Enterococcus faecium VP (Orla-Jensen 1919) Schleifer and Kilpper-Blz 1984 <- Strep-
tococcus faecium (basonym) ATCC 19434 | DSM 20477, AJ276355 | JCM 5804,
AB012213, Eco.faeci3 | NCDO 942 | NCTC 7171
Enterococcus ?avescens VP Pompei et al. 1992 CA 2 | ATCC 49996 | CCM 4239, | CCUG
30567 | DSM 7370 | LMG 13518, AJ301832
Enterococcus gallinarum VP (Bridge and Sneath 1982) Collins et al. 1984 <- Strepto-
coccus gallinarum (basonym) F87/276 | PB21 | ATCC 35038 | CCUG 18658 | CECT
970, AJ420805 | DSM 20628 | LMG 13129, AJ301833 | NCDO 2313 | NCTC 11428
41 4
197
Enterococcus gilvus VP Turrell et al. 2002 PQ1, AY033814 | ATCC BAA-350 | CCUG
45553
Enterococcus haemoperoxidus VP Svec et al. 2001 440 | CCM 4851, AF286832 | LMG
19487
Enterococcus hirae VP Farrow and Collins 1985 R | ATCC 8043 | CCM 2423 | CCM 2424 |
DSM 20160, AJ276356, Y17302 | IMET 11742 | NCDO 1258 | NCFB 1258, Y18354
| NCIB 6459
Enterococcus malodoratus VP Collins et al. 1984 ATCC 43197, Y18339, AF061012 |

DSM 20681 | NCDO 846
Enterococcus moraviensis VP Svec et al. 2001 330 | CCM 4856, AF286831 | LMG 19486
Enterococcus mundtii VP Collins et al. 1986 MUTK 559, Y18340, AF061013 | ATCC
43186 | DSM 4838 | NCDO 2375
Enterococcus pallens VP Turrell et al. 2002 PQ2, AY033815 | ATCC BAA-351 | CCUG
45554
Enterococcus phoeniculicola VP Law-Brown and Meyers 2003 JLB-1, AY028437 |
Enterococcus porcinus VP Teixeira et al. 2001 DS 139083 | ATCC 700913, AF335596
| CCUG 43229 | NCIMB 13634
Enterococcus pseudoavium VP Collins et al. 1989 47-16, Y18356, AF061002 | ATCC

49372 | DSM 5632 | NCDO 2138
Enterococcus raf?nosus VP Collins et al. 1989 1789/79 | ATCC 49427 | DSM 5633 |
NCIMB 12901, Y18296 | NCTC 12192
Enterococcus ratti VP Teixeira et al. 2001 DS 270587, AF326472 415 | ATCC 700914 |
CCUG 43228 | NCIMB 13635
Enterococcus saccharolyticus VP (Farrow et al. 1985) Rodrigues and Collins 1991 <-
Streptococcus saccharolyticus (basonym) HF 62 | ATCC 43076 | DSM 20726 |
NCDO 2594, X55767, Eco.saclyt
Enterococcus seriolicida VP Kusuda et al. 1991 = Lactococcus garvieae (senior het-
erotypic synonym) YT-3, L32813, Lcc.garvi2 | ATCC 49156 | DSM 6783
Enterococcus solitarius VP Collins et al. 1989 885/78 | ATCC 49428, AF061010 | DSM
5634, AJ301840 | NCTC 12193
Enterococcus sulfureus VP Martinez-Murcia and Collins 1991 MUTK 31, X55133,
Eco.sulfur | NCDO 2379, X55133, Eco.sulfur
Enterococcus villorum VP Vancanneyt et al. 2001 416 88-5474 | CCM 4887 | LMG 12287,
AJ271329
Genus II. Atopobacter VP
Atopobacter phocae VP (T) Lawson et al. 2000 M1590/94/2, Y16546 | CCUG 42358 |
CIP 106392
Genus III. Melissococcus VP
Melissococcus plutonius VP (T) Bailey and Collins 1983 NCDO 2443, X75751,
Mlsc.plutn
Genus IV. Tetragenococcus VP
Tetragenococcus halophilus VP (T) (Mees 1934) Collins et al. 1993 <- Pediococcus
halophilus (basonym) TC 1 | ATCC 33315 | DSM 20339, AJ301843 | IAM 12284 |
IAM 1676, D88668, Tgc.halop2 | JCM 5888, D87680, Tgc.haloph | NCDO 1635
Tetragenococcus muriaticus VP (Mees 1934) Collins et al. 1993 X-1 | JCM 10006,
D88824
Genus V. Vagococcus VP
Vagococcus ?uvialis VP (T) Collins et al. 1990 M-29C | ATCC 49515 | CCUG 32704,
Y18098 | DSM 5731 | NCDO 2497, X54258, Vag.? uvia
Vagococcus fessus VP Hoyles et al. 2000 M2661/98/1, AJ243326 | CCUG 41755
Vagococcus lutrae VP Lawson et al. 1999 CCUG 39187, Y17152
41 5
41 6
198
Vagococcus salmoninarum VP Wallbanks et al. 1990 OS1-68 | ATCC 51200 | DSM 6633
| NCFB 2777, X54272, Vag.salmon
Family V. "Leuconostocaceae"
Genus I. Leuconostoc AL
Leuconostoc mesenteroides subsp. mesenteroides AL (T) (Tsenkovskii 1878) van Tieghem
1878 37 Y | ATCC 8293 | CCM 1803 | DSM 20343, M23035, Lc.mesente | NCDO
523, X95978, Lc.mesent2 | NCIB 8023
Leuconostoc inhae VP Kim et al. 2003 IH003, AF439560 | DSM 15101 | KCTC 3774
Leuconostoc mesenteroides subsp. cremoris VP (Knudsen and Srensen 1929) Garvie
1983 <- Leuconostoc cremoris (basonym) ATCC 19254 | CCM 2078 | DSM 20346
| IMET 10694 | NCDO 543
Leuconostoc mesenteroides subsp. dextranicum VP (Beijerinck 1912) Garvie 1983 <-

Leuconostoc dextranicum (basonym) ATCC 19255 | CCM 2086 | DSM 20484 |
NCDO 529 | NRRL B-3469
Leuconostoc amelibiosum VP Schillinger et al. 1989 = Leuconostoc citreum (senior
heterotypic synonym) ATCC 13146 | DSM 20188 | NRRL B-742
Leuconostoc argentinum VP Dicks et al. 1993 DSM 8581, AF175403 | LL76
Leuconostoc carnosum VP Shaw and Harding 1989 SML40 | ATCC 49367 | DSM 5576 |
NCFB 2776, X95977, Lc.carnosu
Leuconostoc citreum VP Farrow et al. 1989 = Leuconostoc amelibiosum (junior het-
erotypic synonym) B2399 | ATCC 49730 | DSM 5577 | NCDO 1837
Leuconostoc cremoris AL (Knudsen and Srenson 1929) Garvie 1960 -> Leuconos-
toc mesenteroides subsp. cremoris LF2 | ATCC 19254 | CCM 2078 | DSM 20346,
M23034, Lc.mesencr | IMET 10693 | NCDO 543
Leuconostoc dextranicum AL (Beijerinck 1912) Hucker and Pederson 1930 -> Leu-
conostoc mesenteroides subsp. dextranicum DSM 20484 | IMET 10694 | NCDO
529
Leuconostoc fallax VP Martinez-Murcia and Collins 1992 DSM 20189, S63851, Lc.fal-
lax
Leuconostoc ?culneum VP Antunes et al. 2002 FS-1, AF360736 | DSM 13613 | NRRL
B-23447
Leuconostoc fructosum VP (Kodama 1956) Antunes et al. 2002 <- Lactobacillus fructo-
sus (basonym) ATCC 13162 | DSM 20349, AF360737 | NBRC 3516 | NCDO 2345,
X61140, L.fructosu | NCIMB 10784
Leuconostoc gasicomitatum VP Bjrkroth et al. 2001 417 TB 1-10 | LMG 18811,
AF231131
Leuconostoc gelidum VP Shaw and Harding 1989 SML9 | ATCC 49366 | DSM 5578,
AF175402 | NCFB 2775
Leuconostoc kimchii VP Kim et al. 2000 IH25, AF173986 | IMSNU 11154 | KCTC 2386
Leuconostoc lactis AL Garvie 1960 ATCC 19256 | DSM 20202, M23031, Lc.lactis |
NCDO 533
Leuconostoc oeni AL Garvie 1967 -> Oenococcus oeni ATCC 23279 | DSM 20252,
M35820, Occ.oeni2 | NCDO 1674, X95980, Occ.oeni1
Leuconostoc paramesenteroides AL Garvie 1967 -> Weissella paramesenteroides R
80 | ATCC 33313 | DSM 20288, M23033, Wei.pmesen | IMET 10704 | NCDO 803,
X95982, Wei.pmese2
Leuconostoc pseudomesenteroides VP Farrow et al. 1989 39 | ATCC 12291 | CCM 2083
| DSM 20193 | DSM 284 | NCDO 768, X95979, Lc.pmesent | NCIB 8699
Genus II. Oenococcus VP

Oenococcus oeni VP (T) (Garvie 1967) Dicks et al. 1995 <- Leuconostoc oeni (basonym)
Baudry 1 | ATCC 23179 | DSM 20252, M35820, Occ.oeni2 | NCDO 1674, X95980,
Occ.oeni1
Genus III. Weissella VP
41 7
199
Weissella viridescens VP (T) (Niven and Evans 1957) Collins et al. 1994 <- Lactobacil-
lus viridescens (basonym) S38A | ATCC 12706 | CCM 56 | DSM 20410, M23040,
Wei.viride | NCDO 1655, X52568, Wei.virid1 | NCIB 8965
Weissella cibaria VP Bjrkroth et al. 2002 = Weissella kimchii (junior heterotypic syn-
onym) II-I-59 | CCUG 41967 | LMG 17699, AJ295989
Weissella confusa VP (Holzapfel and Kandler 1969) Collins et al. 1994 <- Lactobacillus
confusus (basonym) 548-D | ATCC 10881 | DSM 20196, M23036, Wei.confus |
NCDO 1586, X52567, Wei.confu2 | NCIB 9311
Weissella halotolerans VP (Kandler et al. 1983) Collins et al. 1994 <- Lactobacillus
halotolerans (basonym) G1 | R61 | ATCC 35410 | DSM 20190, M23037, Wei.haltol
Weissella hellenica VP Collins et al. 1994 LV346 | ATCC 51523 | DSM 7378 | NCFB
2973, X95981, Wei.helle2
Weissella kandleri VP (Holzapfel and van Wyk 1983) Collins et al. 1994 <- Lactobacil-
lus kandleri (basonym) L250 | ATCC 51149 | DSM 20593, M23038, Wei.kandlr |
NCFB 2753
Weissella kimchii VP (Choi et al. 2002) emend. Ennahar and Cai 2004 = Weissella
cibaria (senior heterotypic synonym) CHJ3, AF312874 | DSM 14295 | KCTC 3746
| KCCM 41287
Weissella koreensis VP Lee et al. 2002 S-5623 | KCTC3621 | KCCM 41516 | JCM 11263,
AY035891
Weissella minor VP (Kandler et al. 1983) Collins et al. 1994 <- Lactobacillus minor
(basonym) 3 | ATCC 35412 | DSM 20014, M23039, Wei.minor
Weissella paramesenteroides VP (Garvie 1967) Collins et al. 1994 <- Leuconostoc
paramesenteroides (basonym) R 80 | ATCC 33313 | DSM 20288, M23033,
Wei.pmesen | IMET 10704 | NCDO 803, X95982, Wei.pmese2
Weissella soli VP Magnusson et al. 2002 Mi268, AY028260 | DSM 14420 | LMG 20113
Weissella thailandensis VP Tanasupawat et al. 2000 FS61-1, AB023838 | PCU 210 |
NRIC 0298 | HSCC 1412 | JCM10695 | TISTR 1384
Family VI. Streptococcaceae AL
Genus I. Streptococcus AL (T)
Streptococcus pyogenes AL (T) Rosenbach 1884 SF 130 | T1 | ATCC 12344, AB002521,
Stc.pyoge3 | DSM 20565 | IMET 3002 | NCTC 8198
Streptococcus acidominimus AL Ayers and Mudge 1922 ATCC 51725 | CCUG 27296 |
DSM 20622 | NCDO 2025 | NCDO 2025, X58301, Stc.acidom
Streptococcus adjacens VP Bouvet et al. 1989 -> Abiotrophia adiacens GaD | ATCC
49175, D50540, Abt.adiacn | CIP 103243 | DSM 9848
Streptococcus agalactiae AL Lehmann and Neumann 1896 G 19 | ATCC 13813,
AB002479, Stc.agala4 | DSM 2134 | NCDO 1348, X59032, Stc.agalac | NCTC
8181, AB002479, Stc.agala4
Streptococcus alactolyticus VP Farrow et al. 1985 = Streptococcus intestinalis (junior
heterotypic synonym) GP2 | ATCC 43077 | DSM 20728 | NCDO 1091, X58319,
Stc.alacto
Streptococcus anginosus AL Andrewes and Horder 1906 emend. Whiley and Beighton
1991 Havill III | ATCC 12395 | ATCC 33397 | DSM 20563 | NCTC 10713, X58309,
Stc.angino
Streptococcus australis VP Willcox et al. 2001 AI-1 | ATCC 700641, AY485604,
AF184974 | NCTC 13166
Streptococcus bovis AL Orla-Jensen 1919 = Streptococcus equinus (senior heterotypic
synonym) Pearl 11 | ATCC 33317, AB002482, Stc.bovis3 | ATCC 33317, M58835,
Stc.bovis | DSM 20480 | NCDO 597, AB002482, Stc.bovis3 | NCDO 597, X58317,
Stc.bovis1 | NCTC 8177
Streptococcus canis VP Devriese et al. 1986 STR-T1 | ATCC 43496, AB002483, Stc.ca-
nis2 | DSM 20715, AB002483, Stc.canis2 | DSM 20715, X59061, Stc.canis
Streptococcus caprinus VP Brooker et al. 1996 = Streptococcus gallolyticus (senior
heterotypic synonym) TPC 2.3 | ACM 3969, Y10868, Stc.gallyt
200
Streptococcus casseli?avus VP Vaughan et al. 1979 -> Enterococcus casseli?avus

ATCC 25788, Y18161 | CCM 2478 | DSM 20680 | NCDO 2372 | NCIB 11449
Streptococcus cecorum VP Devriese et al. 1983 -> Enterococcus cecorum A6O,
Y18355, AF061009 | ATCC 43198 | DSM 20682 | NCDO 2674
Streptococcus constellatus subsp. constellatus AL Prvot 1924 emend. Whiley and
Beighton 1991 ATCC 27823 | CIP 103247 | DSM 20575 | NCDO 2226 | NCTC
11325, X58310, Stc.angin2 | VPI 3810
Streptococcus constellatus subsp. pharyngis VP Whiley et al. 1999 MM9889a | NCTC
13122
Streptococcus cremoris AL Orla-Jensen 1919 -> Streptococcus lactis subsp. cremoris
HP | ATCC 19257, M58836, Lcc.laccre | DSM 20069 | IMET 10707 | NCDO 607 |
NCIB 8662
Streptococcus criceti AL Coykendall 1977 HS6 | ATCC 19642 | DSM 20562 | NCDO
2720, X58305, Stc.cricet
Streptococcus cristatus VP Handley et al. 1991 CR311 | DSM 8249 | NCTC 12479,
AB008313, Stc.crstat
Streptococcus defectivus VP Bouvet et al. 1989 -> Abiotrophia defectiva SC10 | ATCC
49176, D50541, Abt.defect | CIP 103242 | DSM 9849
Streptococcus didelphis VP Rurangirwa et al. 2000 W94-11374-1 | ATCC 700828,
AF176103
Streptococcus dif?cilis VP Eldar et al. 1995 ND 2-22 | ATCC 51487 | CIP 103768 | LMG
159
Streptococcus downei VP Whiley et al. 1988 MFe28 | ATCC 33748 | DSM 5635 | NCTC
11391, X58306, Stc.downei
Streptococcus durans VP Knight et al. 1984 = Enterococcus durans (senior homotypic
synonym) ATCC 19432
Streptococcus dysgalactiae subsp. dysgalactiae VP Garvie et al. 1983 emend. Vieira et
al. 1998 134 | ATCC 43078, AB002485, Stc.dysga3 | DSM 20662 | NCDO 2023 |
NCDO 2023, X59030, Stc.dysgal
Streptococcus dysgalactiae subsp. equisimilis VP Vandamme et al. 1996 emend. Vieira
et al. 1998 LMG 16026 | NCFB 1356, AB008926, Stc.dysga4
Streptococcus entericus VP Vela et al. 2002 CCUG 44616 | CECT 5353, AJ409287
Streptococcus equi subsp. equi AL Sand and Jensen 1888 C 15 | ATCC 33398,
AB002515, Stc.equi3 | DSM 20561 | NCDO 2493, X58314, Stc.equi | NCTC 9682,
AB002515, Stc.equi3
Streptococcus equi subsp. zooepidemicus VP Farrow and Collins 1985 S 34 | ATCC
43079, AB002516, Stc.equi4 | DSM 20727 | NCDO 1358 | NCTC 7023
Streptococcus equinus AL Andrewes and Horder 1906 Hl2B = Streptococcus bovis
(junior heterotypic synonym) | ATCC 9812 | DSM 20558 | NCDO 1037, X58318,
Stc.equins
Streptococcus faecalis AL Andrewes and Horder 1906 -> Enterococcus faecalis ATCC
19433 | DSM 20478 | NCDO 581 | NCIB 775 | NCTC 775
Streptococcus faecium AL Orla-Jensen 1919 -> Enterococcus faecium ATCC 19434 |
DSM 20477, AJ276355 | NCDO 942 | NCTC 7171
Streptococcus ferus VP Coykendall 1983 8S1, AJ420197 | ATCC 33477 | DSM 20646 |
LMG 16520, AY058218
Streptococcus gallinaceus VP Collins et al. 2002 CCUG 42692, , AJ307888 | CIP
107087
Streptococcus gallinarum VP Bridge and Sneath 1982 -> Enterococcus gallinarum
F87/276 | PB21 | ATCC 35038 | DSM 20628 | NCDO 2313 | NCTC 11428
Streptococcus gallolyticus VP Osawa et al. 1996 = Streptococcus caprinus (junior het-
erotypic synonym) ACM 3611, X94337
Streptococcus gallolyticus subsp. gallolyticus VP Schlegel et al. 2003 <- Streptococcus
gallolyticus (basonym) = Streptococcus caprinus (junior heterotypic synonym)
201
ACM 3611, X94337 | CCUG 35224 | CIP 105428 | HDP 98035 | JCM 10005 | LMG
16802
Streptococcus gallolyticus subsp. macedonicus VP (Tsakalidou et al. 1998) Schlegel et
al. 2003 <- Streptococcus caprinus (basonym) ACA-DC 206 | ATCC BAA-249 |
CCUG 39970 | CIP 105683 | HDP 98362 | JCM 11119 | LAB 617 | , Z94012
Streptococcus gallolyticus subsp. pasteurianus VP (Poyart et al. 2002) Schlegel et al.
2003 <- Streptococcus pasteurianus (basonym) 418 <- Streptococcus pasteurianus
(basonym) CIP 107122 | NEM 1202, not available from type
Streptococcus garvieae VP Collins et al. 1984 -> Lactococcus garvieae 159 | ATCC
43921 | DSM 20684 | JCM 10343 | NCDO 2155
Streptococcus gordonii VP Kilian et al. 1989 ATCC 10558, AF003931, Stc.gordo3 |
DSM 6777 | NCTC 7865, D38483, Stc.gordon | SK3
Streptococcus hansenii AL Holdeman and Moore 1974 -> Ruminococcus hansenii
ATCC 27752, D14155, Ruc.hanse2 | ATCC 27752, M59114, Ruc.hansen | DSM
20583 | VPI C7-24
Streptococcus hyointestinalis VP Devriese et al. 1988 S93 | ATCC 49169, AB002518,
Stc.hyoin2 | DSM 20770, AB002518, Stc.hyoin2 | DSM 20770, X58313, Stc.hyoint
Streptococcus hyovaginalis VP Devriese et al. 1997 SHV515, Y07601, Stc.hyovag |
DSM 12219 | LMG 14710
Streptococcus infantarius subsp. infantarius VP ( Schlegel et al. 2000) Schlegel et al.
2003 419 HDP 90056, AF429762 | ATCC BAA-102 | CCUG 43820 | CIP 103233 |
NCDO 599, AF177729
Streptococcus infantarius subsp. coli Schlegel et al. 2003 420 -> Streptococcus lute-
tiensis HDP 90246, AF429763 | CCUG 47831 | NCDO 964 | NEM 1867
Streptococcus infantis VP Kawamura et al. 1998 GTC 849, AB008315, Stc.infant |
O-122 | JCM 10157
Streptococcus iniae AL Pier and Madin 1976 = Streptococcus shiloi (junior heterotypic
synonym) PW | ATCC 29178, AF335572 | DSM 20576
Streptococcus intermedius AL Prvot 1925 emend. Whiley and Beighton 1991 ATCC
27335, AF104671 | CIP 103248 | DSM 20573 | NCDO 2227 | VPI 3372A
Streptococcus intestinalis VP Robinson et al. 1988 = Streptococcus alactolyticus (senior
heterotypic synonym) 76-84-1 | ATCC 43492, AB002519, Stc.alact2 | DSM 5199
Streptococcus lactis subsp. lactis AL (Lister 1873) Lohnis 1909 -> Lactococcus lactis
subsp. lactis ATCC 19435, M58837, Lcc.lactis | DSM 20481 | IMET 10699 | NCDO
604
Streptococcus lactis subsp. cremoris VP (Orla-Jensen 1919) Garvie and Farrow 1982 <-
Streptococcus cremoris (basonym) -> Lactococcus lactis subsp. cremoris ATCC
19257, M58836, Lcc.laccre | IMET 10707 | NCDO 607
Streptococcus lactis subsp. diacetilactis VP (Matuszewski et al. 1936) Garvie and Far-
row 1982 = Lactococcus lactis subsp. lactis (senior heterotypic synonym) NCDO
176
Streptococcus lutetiensis VP Poyart et al. 2002 421 HDP 90246, AF429763 | NCDO 964 |
NEM 1867
Streptococcus macacae VP Beighton et al. 1984 25-1 | ATCC 35911 | DSM 20724 | NCTC
11558, X58302, Stc.macaca
Streptococcus macedonicus VP Tsakalidou et al. 1998 = Streptococcus waius (junior
heterotypic synonym) ACA-DC 206, Z94012, Stc.macedn | LAB 617, Z94012,
Stc.macedn
41 8
41 9
There are a nu mbe r of defe cts in the prop osa l of Strep toc occ us infa ntariu s, includ ing a failure of the au thors to de signat e a ty pe s train .
This is co mplicate d by the nam e ap pearing in th e no ti?ca tio n lis ts, and co mpet ing propos als that call int o que stion is su es of p riority.
42 0
Strept oco ccus infan tarius sub sp . co liis illegitim ate as a typ e s train was not des ign ated .
42 1
202
Streptococcus minor VP Vancanneyt et al. 2004 ON59 | LMG 21734, AY232832 | CCUG
47487
Streptococcus mitis AL Andrewes and Horder 1906 MAFF 911479 | NS 51, AB002520,
Stc.mitis2 | ATCC 49456, AF003929, Stc.mitis3 | NCTC 12261, AB002520, Stc.mi-
tis2 | NCTC 12261, D38482, Stc.mitis
Streptococcus morbillorum AL (Prevot 1933) Holdeman and Moore 1974 -> Gemella
morbillorum 2917 B | ATCC 27824, L14327, Gem.morbil | DSM 20572 | VPI 5424
Streptococcus mutans AL Clarke 1924 ATCC 25175 | DSM 20523 | NBRC 13955 | NCDO
2062 | NCTC 10449, X58303, Stc.mutans
Streptococcus oligofermentans VP Tong et al. 2003 AS 1.3089 | LMG 21535, AY099095
Streptococcus oralis VP Bridge and Sneath 1982 LVG 1 | PB182 | ATCC 35037,
AF003932, Stc.orali3 | DSM 20627 | NCTC 11427, S70359, Stc.orali2 | NCTC
11427, X58308, Stc.oralis
Streptococcus orisratti VP Zhu et al. 2000 A63, AF124350 | ATCC 700640
Streptococcus ovis VP Collins et al. 2001 S369/98/1, Y17358 | CCUG 39485 | LMG
19174
Streptococcus parasanguinis VP Whiley et al. 1990 55898 | SS 898 | ATCC 15912,
AF003933 | DSM 6778
Streptococcus parauberis VP Williams and Collins 1990 BC45 RH | DSM 6631 | NCDO
2020
Streptococcus parvulus VP (Weinberg et al. 1937) Cato 1983 <- Peptostreptococcus
parvulus (basonym) -> Atopobium parvulum IPP 1246 | ATCC 33793 | DSM 20469
| VPI 0546
Streptococcus pasteurianus VP Poyart et al. 2002 422 -> Streptococcus gallolyticus pas-
teurianus NEM782 | CIP 107122
Streptococcus peroris VP Kawamura et al. 1998 GTC 848, AB008314, Stc.perori | O-66
| JCM 10158
Streptococcus phocae VP Skaar et al. 1994 8399 H1, AF235052 | NCTC 12719
Streptococcus plantarum VP Collins et al. 1984 -> Lactococcus plantarum 5L | ATCC
43199 | DSM 20686 | NCDO 1869, X54259, Lcc.planta
Streptococcus pluranimalium VP Devriese et al. 1999 T70, | ATCC 700864 | CCUG
43803 | CIP 106120 | LMG 14177
Streptococcus pleomorphus AL Barnes et al. 1979 EBF 61/608 | ATCC 29734, M23730,
Stc.pleomo | DSM 20574 | NCTC 11087
Streptococcus pneumoniae AL (Klein 1884) Chester 1901 SV 1 | ATCC 33400,
AF003930, Stc.pneum4 | DSM 20566 | NCTC 7465, X58312, Stc.pneumo
Streptococcus porcinus VP Collins et al. 1985 ATCC 43138, AB002523, Stc.porci2
| DSM 20725 | NCDO 600, X58315, Stc.porcin | NCTC 10999, AB002523,
Stc.porci2
Streptococcus raf?nolactis AL Orla-Jensen and Hansen 1932 -> Lactococcus raf?no-
lactis 23.C.5 | ATCC 43920 | DSM 20443 | NCDO 617, X54261, Lcc.raf?n
Streptococcus ratti AL Coykendall 1977 FA1 | ATCC 19645, AJ420201 | DSM 20564 |
IMET 3280
Streptococcus saccharolyticus VP Farrow et al. 1985 -> Enterococcus saccharolyticus
HF 62 | ATCC 43076 | DSM 20726 | NCDO 2594, X55767, Eco.saclyt
Streptococcus salivarius subsp. salivarius AL Andrewes and Horder 1906 ATCC 7073
| DSM 20560 | NCTC 8618
Streptococcus salivarius subsp. thermophilus VP (Orla-Jensen 1919) Farrow and

Collins 1984 -> Streptococcus thermophilus ATCC 19258 | DSM 20617, X68418
| NCDO 573 | NCIB 8510
Streptococcus sanguinis AL White and Niven 1946 ATCC 10556, AF003928 | DSM
20567
42 2
203
Streptococcus shiloi VP Eldar et al. 1995 = Streptococcus iniae (senior heterotypic

synonym) ND 2-16 | ATCC 51499 | CIP 103769
Streptococcus sinensis VP Woo et al. 2002 HKU4, AF432856 | DSM 14990 | LMG 21517
Streptococcus sobrinus VP Coykendall 1983 SL1 | ATCC 33478 | CCM 6070 | DSM
20742, X58307, Stc.sobrin
Streptococcus suis VP (ex Elliott 1966) Kilpper-Blz and Schleifer 1987 Henrichsen
S735 | CCUG 7984 | DSM 9682 | NCTC 10234, AB002525, Stc.suis2 | NCTC 10234,
AF009477, Stc.suis3
Streptococcus thermophilus VP (ex Orla-Jensen 1919) Schleifer et al. 1995 <- Strep-
tococcus salivarius subsp. thermophilus (basonym) ATCC 19258 | DSM 20617,
X68418, Stc.therm3 | NCDO 573 | NCIB 8510
Streptococcus thoraltensis VP Devriese et al. 1997 S69, Y09007, Stc.thralt | DSM 12221
| LMG 13593
Streptococcus uberis AL Diernhofer 1932 ATCC 19436, AB002526, Stc.uberi2 | DSM

20569 | NCDO 2038 | NCTC 3858, AB002526, Stc.uberi2
Streptococcus urinalis VP Collins et al. 2000 2285-97 | CCUG 41590, AJ131965
Streptococcus vestibularis VP Whiley and Hardie 1988 MM1 | DSM 5636 | NCTC 12166,
X58321, Stc.vestib
Streptococcus waius VP Flint et al. 1999 = Streptococcus macedonicus (senior homo-
typic synonym) 3 1 | NZRCC 20100, AF088900
Genus II. Lactococcus VP
Lactococcus lactis subsp. lactis VP (T) (Lister 1873) Schleifer et al. 1986 <- Strepto-
coccus lactis subsp. lactis (basonym) = Lactobacillus xylosus (junior heterotypic
synonym) = Streptococcus lactis subsp. diacetilactis (junior heterotypic synonym)
ATCC 19435, M58837, Lcc.lactis | CCM 1877 | DSM 20481 | IMET 10699 | NCDO
604 | NCIB 6681 | NCTC 6681

Lactococcus lactis subsp. cremoris VP (Orla-Jensen 1919) Schleifer et al. 1986 <- Strep-
tococcus lactis subsp. cremoris (basonym) ATCC 19257, M58836, Lcc.laccre |
DSM 20069 | IMET 10707 | NCDO 607 | NCIB 8662
Lactococcus lactis subsp. diacetilactis NCDO 176
Lactococcus lactis subsp. hordniae VP Schleifer et al. 1986 HC-1 | ATCC 29071 | DSM
20450 | NCDO 2181
Lactococcus garvieae VP (Collins et al. 1984) Schleifer et al. 1986 <- Streptococcus
garvieae (basonym) = Enterococcus seriolicida (junior heterotypic synonym) 159
| ATCC 43921 | DSM 20684 | JCM 10343 | NCDO 2155
Lactococcus piscium VP Williams et al. 1990 HRIA 68, X53905, Lcc.piscum | CIP
104371 | DSM 6634 | NCFB 2778
Lactococcus plantarum VP (Collins et al. 1984) Schleifer et al. 1986 <- Streptococ-
cus plantarum (basonym) 5L | ATCC 43199 | DSM 20686 | NCDO 1869, X54259,
Lcc.planta
Lactococcus raf?nolactis VP (Orla-Jensen and Hansen 1932) Schleifer et al. 1988 <-
Streptococcus raf?nolactis (basonym) 23.C.5 | ATCC 43920 | DSM 20443 | NCDO
617, X54261, Lcc.raf?n
Family VII. Incertae sedis 423
Genus I. Acetoanaerobium VP
Acetoanaerobium noterae VP (T) Sleat et al. 1985 NOT-3 | ATCC 35199
Genus II. Oscillospira AL
Oscillospira guilliermondii AL (T) Chatton and Perard 1913
Genus III. Syntrophococcus VP
Syntrophococcus sucromutans VP (T) Krumholz and Bryant 1986 S195, AF202264 | DSM
3224, Y18191
Phylum BXIV. Actinobacteria NP
42 3
Lud wig ma kes no ment ion of any o f th e g enera in ce rta e s edis . Seq uenc es a re no t av aila ble from the RDP s o pos ition c anno t be c on?rmed .
204
Class I. Actinobacteria VP 424

Subclass I. Acidimicrobidae VP
Order I. Acidimicrobiales VP
Suborder IV. "Acidimicrobineae"
Family I. Acidimicrobiaceae VP
Genus I. Acidimicrobium VP (T)
Acidimicrobium ferrooxidans VP (T) Clark and Norris 1996 ICP | DSM
10331 | DSM 10331, U75647, A.feroxidn
Subclass II. Rubrobacteridae VP
Order I. Rubrobacterales VP
Suborder V. "Rubrobacterineae"
Family I. Rubrobacteraceae VP
Genus I. Rubrobacter VP (T)
Rubrobacter radiotolerans VP (T) (Yoshinaka et al. 1973) Suzuki et al. 1989
<- Arthrobacter radiotolerans (basonym) ATCC 51242 | DSM 46359,
X87134, Rbb.radtol | DSM 5868, X98372, Rbb.radto3 | IAM 12072 |
IMET 11468 | JCM 2153, U65647, Rbb.radto2 | NCIMB 11766
Rubrobacter xylanophilus VP Carreto et al. 1996 PRD-1, X87135, Rbb.xy-
lano | DSM 9941 | NBRC 16129
Genus II. Conexibacter VP
Conexibacter woesei VP (T) Monciardini et al. 2003 ID131577 | DSM 14684
| JCM 11494, AJ440237
Genus III. Solirubrobacter VP

Solirubrobacter pauli VP (T) Singleton et al. 2003 B33D1, AY039806 |
Genus IV. Thermoleophilum VP 425
Thermoleophilum album VP (T) Zarilla and Perry 1986 HS-5 | ATCC 35263,
AJ458462
Thermoleophilum minutum VP Zarilla and Perry 1986 YS-4 | ATCC 35265,
AJ458464
Subclass III. Coriobacteridae VP
Order I. Coriobacteriales VP
Suborder VI. "Coriobacterineae"
Family I. Coriobacteriaceae VP
Genus I. Coriobacterium VP (T)
Coriobacterium glomerans VP (T) Haas and Knig 1988 PW2 | ATCC 49209
| DSM 20642, X79048 | JCM 10262
Genus II. Atopobium VP

Atopobium minutum VP (T) (Hauduroy et al. 1937) Collins and Wallbanks
1993 <- Lactobacillus minutus (basonym) ATCC 33267, M59059,
Atp.minut2 | DSM 20586 | VPI 9428
Atopobium fossor VP (Bailey and Love 1986) Kageyama et al. 1999 <-
Eubacterium fossor (basonym) ATCC 43386, L34620 | NCTC 11919
| JCM 9981 | VPB 2127
42 4
The Actinoba cte ria are a un iqu e lin e o f d escen t. The lineag es of Coriobac teridae, Rub ro bac teridae, an d A cidom ic obidae are dee p branc h-
ing an d well sepa ra ted in th e PCA plots, with the former ap pearing e mbed ded in th e out ly ing re gio ns of the Clo stridia . Lud wig notes s upp ort
for the sep aration of th e Kineospo riaceae (sic Kineococcace ae) as we hav e no ted with our own unpu blish ed s eque nc e data . The lac k o f
a st able b ra nch ing pa ttern with in the m ajo r taxa of t he Actin obac teria is borne ou t b y the in cred ibly tight clus terin g in the PCA p lots . While
the 16S da ta m igh t sugge st t hat t he ta xa of A ct ino bacteria are o verc la ss i?ed, there is am ple su pport f or the cu rren t sc he me b as ed o n oth er
fea tures.
Lu dwig ha s also calle d into que stion the se paration of b i?dob act eria int o a se parate c las s . Althou gh h e n otes s ome pe cu lia rities in the
seque nces, he ha s n ot recogn ized th ese as a separat e linea ge. P CA plo ts c learly de mons trate a s eparation of this group f ro m the main line
of de scent . More importa ntly, th e adjacent group s in the plots a re c on siste nt wit h the adjac ent grou ps in the RDP tree. W hile this c an be
argu ed as an artifact of the tree ing , it m igh t also indicat e so me add itiona l s uppo rt fo r th e se paration prop os ed by Sta ck ebran dt et al. This will
likely be reso lved as w ork on Volume IV p ro gresses.
42 5
Se quen ce da ta became a vaila ble sub seq uent to initial pla ce ment of th is g enu s wit hin th e Ps eudo mon adac ea e. It is n ow app arent tha t
this placeme nt was in e rror (Yakim ov e t al., IJSE M 53:37 738 0).
205
Atopobium parvulum VP (Weinberg et al. 1937) Collins and Wallbanks 1993

<- Streptococcus parvulus (basonym) 1246 | ATCC 33793 | ATCC
33793, X67150, Atp.parvul | DSM 20469 | VPI 0546
Atopobium rimae VP (Olsen et al. 1991) Collins and Wallbanks 1993 <-
Lactobacillus rimae (basonym) ATCC 49626, AF292371 | DSM 7090
| VPI D140H-11A
Atopobium vaginae VP Rodriguez Jovita et al. 1999 CCUG 38953, Y17195

Genus III. Collinsella VP
Collinsella aerofaciens VP (T) (Eggerth 1935) Kageyama et al. 1999 <- Eu-
bacterium aerofaciens (basonym) ATCC 25986 | DSM 3979 | JCM
10188, AB011816, AB011816 | VPI 1003
Collinsella intestinalis VP Kageyama and Benno 2000 RCA56-68,
AB031063 | DSM 13280 | JCM 10643
Collinsella stercoris VP Kageyama and Benno 2000 RCA55-54,
AB031061 | DSM 13279 | JCM 10641
Genus IV. Cryptobacterium VP
Cryptobacterium curtum VP (T) Nakazawa et al. 1999 12-3 | ATCC 700863,
AB019260
Genus V. Denitrobacterium VP
Denitrobacterium detoxi?cans VP (T) Anderson et al. 2000 NPOH1,
U43492 | ATCC 700546
Genus VI. Eggerthella VP
Eggerthella lenta VP (T) (Eggerth 1935) Wade et al. 1999 <- Eubacterium
lentum (basonym) ATCC 25559, AF292375 | DSM 2243 | NCTC
11813 | VPI 0255
Genus VII. Olsenella VP
Olsenella uli VP (Olsen et al. 1991) Dewhirst et al. 2001 426 <- Lactobacillus
uli (basonym) ATCC 49627, AF292373, AY005814 | DSM 7084 | VPI
D76D-27C
Olsenella profusa VP Dewhirst et al. 2001 427 D315A-29, AF292374 | DSM
13989
Genus VIII. Slackia VP
Slackia exigua VP (T) (Poco et al. 1996) Wade et al. 1999 <- Eubacterium
exiguum (basonym) S-7 | ATCC 700122, AF101240, Slk.exigua
Slackia heliotrinireducens VP (Lanigan 1983) Wade et al. 1999 <- Pep-
tostreptococcus heliotrinireducens (basonym) RHS 1 | ATCC 29202,
AF101241, Slk.hlitrn | NCTC 11029
Subclass IV. Sphaerobacteridae VP
Order I. Sphaerobacterales VP
Suborder VII. "Sphaerobacterineae"
Family I. Sphaerobacteraceae VP
Genus I. Sphaerobacter VP (T)
Sphaerobacter thermophilus VP (T) Demharter et al. 1989 S 6022, X53210,
Spb.thermo | ATCC 49802 | DSM 20745, X53210, Spb.thermo
Subclass V. Actinobacteridae VP
Order I. Actinomycetales AL
Suborder VIII. Actinomycineae VP
Family I. Actinomycetaceae AL
Genus I. Actinomyces AL (T)
Actinomyces bovis AL (T) Harz 1877 P1S | ATCC 13683 | DSM 43014,
X53224, Act.bovis | IMET 10973
42 6
42 7
206
Actinomyces bernardiae VP Funke et al. 1995 -> Arcanobacterium bernar-

diae GF 750 | CCUG 33419 | DSM 9152, X79224, Abc.bernrd | LCDC
89-0504
Actinomyces bowdenii VP Pascual et al. 1999 M1327/96/1 | CCUG 37421,
AJ234039
Actinomyces canis VP Hoyles et al. 2000 M2289/98/2 | CCUG 41706,
AJ243891
Actinomyces cardiffensis VP Hall et al. 2003 R10394 | CCUG 44997,
AJ421779 | CIP 107323
Actinomyces catuli VP Hoyles et al. 2001 M1192/98/1 | CCUG 41709,
AJ276805 | CIP 106507
Actinomyces coleocanis VP Hoyles et al. 2002 M343/98/2, AJ249326 |
CCUG 41708 | CIP 106873
Actinomyces denticolens VP Dent and Williams 1984 Sh 8/4303 | ATCC
43322 | DSM 20671 | NCTC 11490, X80412, Act.dentic
Actinomyces europaeus VP Funke et al. 1997 CCUG 32789A, Y08828,
Act.europa
Actinomyces funkei VP Lawson et al. 2001 CCUG 42773, AJ404889 |
CIP106713
Actinomyces georgiae VP Johnson et al. 1990 ATCC 49285 | DSM 6843,
X80413, Act.georgi | VPI D145A-7
Actinomyces gerencseriae VP Johnson et al. 1990 2-606-032 | ATCC 23860
| CDC W 838 | DSM 6844, X80414, Act.geren3 | VPI 12594
Actinomyces graevenitzii VP Pascual Ramos et al. 1997 CCUG 27294,

Y09589, Act.graeve
Actinomyces hongkongensis VP Woo et al. 2004 HKU8, AF433168 | DSM
15629 | CIP 107949
Actinomyces hordeovulneris VP Buchanan et al. 1984 ATCC 35275 | CIP
103149, X82448, Act.hordvl | DSM 20732 | UCD 81-332-9
Actinomyces howellii VP Dent and Williams 1984 Sh 7/4276 | NCTC 11636,
X80411, Act.howell
Actinomyces humiferus AL Gledhill and Casida 1969 -> Cellulomonas hu-
milata ATCC 25174, X82449
Actinomyces hyovaginalis VP Collins et al. 1993 BM 1192/5 | ATCC 51367
| CIP 103923 | DSM 10695 | NCFB 2983, X69616, Act.hyovag
Actinomyces israelii AL (Kruse 1896) Lachner-Sandoval 1898 277 | ATCC

12102 | CIP 103259, X82450, Act.israe5 | DSM 43320 | IMET 10972 |
WVU 46
Actinomyces marimammalium VP Hoyles et al. 2001 M1749/98/1,
AJ276405 | CCUG 41710 | CIP 106509
Actinomyces meyeri VP Cato et al. 1984 PIP 2477B | ATCC 35568 | CIP
103148, X82451, Act.meyeri | DSM 20733 | VPI 8617
Actinomyces naeslundii AL Thompson and Lovestedt 1951 279 | ATCC
12104 | DSM 43013, M33911, Act.naesl2 | DSM 43013, X53226,
Act.naeslu | IMET 11091 | NCTC 10301, X81062, Act.naesl3 | WVU
45
Actinomyces neuii subsp. neuii VP Funke et al. 1994 97/90, X71861,
Act.neuii2 | ATCC 51847 | DSM 8576
Actinomyces neuii subsp. anitratus VP Funke et al. 1994 50/90, X71862,
Act.neuii3 | DSM 8577
Actinomyces odontolyticus AL Batty 1958 2A.10 | API ATB 32 A | ATCC
17929 | CDC X363 | DSM 43760 | NCTC 9935, X80504, Act.odont2
Actinomyces pyogenes VP (Glage 1903) Reddy et al. 1982 <- Corynebac-
terium pyogenes (basonym) -> Arcanobacterium pyogenes 84 |
207
C-100 | ATCC 19411, M29552, Abc.pyogen | DSM 20630 | NCTC

5224, X79225, Abc.pyoge3
Actinomyces radicidentis VP Collins et al. 2001 M1749/98/1, AJ251986 |
CCUG 41710 | CIP 106509
Actinomyces radingae VP Wst et al. 1995 emend. Vandamme et al. 1998
APL1, X78719, Act.radnga | ATCC 51856 | CCUG 32394 | CIP 105358
| DSM 9169
Actinomyces slackii VP Dent and Williams 1986 Sh 13/4563 | NCTC 11923,

X82452, Act.slacki
Actinomyces suimastitidis VP Hoyles et al. 2001 CCUG 39276, AJ277385
428 |
CIP 106779
Actinomyces suis VP (Wegienek and Reddy 1982) Ludwig et al. 1992 <-
Eubacterium suis (basonym) -> Actinobaculum suis 50052 | ATCC
33144 | DSM 20639, S83623, Abl.suis
Actinomyces turicensis VP Wst et al. 1995 emend. Vandamme et al. 1998
APL10, X78720, Act.turcns | ATCC 51857 | CCUG 32401 | CIP 105357
| DSM 9168
Actinomyces urogenitalis VP Nikolaitchuk et al. 2000 CCUG 38702,

AJ243791
Actinomyces vaccimaxillae VP Hall et al. 2003 R10176, AJ427451 | CCUG
46091 | CIP 107423
Actinomyces viscosus AL (Howell et al. 1965) Georg et al. 1969 ATCC
15987 | CCUG 14476 | DSM 43327 | IMET 11092 | KCC S-0130 | NIH
T-6 | NCTC 10951, X82453 | WVU 745
Genus II. Actinobaculum VP
Actinobaculum suis VP (T) (Wegienek and Reddy 1982) Lawson et al. 1997
<- Actinomyces suis (basonym) 50052 | ATCC 33144 | DSM 20639,
S83623, Abl.suis
Actinobaculum schaalii VP Lawson et al. 1997 CCUG 27420, Y10773,
Abl.schaa2 | CCUG 27420, Y12329, Abl.schaal
Actinobaculum urinale VP Hall et al. 2003 CCUG 46093,, AJ439453 | CIP
107424
Genus III. Arcanobacterium VP
Arcanobacterium haemolyticum VP (T) (ex Mac Lean et al. 1946) Collins et
al. 1983 11018 | ATCC 9345 | CCM 5947 | CIP 103370 , AJ234059 |
DSM 20595 | IMET 11143 | NCTC 8452
Arcanobacterium bernardiae VP (Funke et al. 1995) Pascual Ramos et al.
1997 <- Actinomyces bernardiae (basonym) GF 750 | CCUG 33419 |
DSM 9152, X79224, Abc.bernrd | LCDC 89-0504
Arcanobacterium hippocoleae VP Hoyles et al. 2002 M401624/00/2 |
CCUG 44697, AJ300767 | CIP 106850
Arcanobacterium phocae VP Pascual Ramos et al. 1997 M1590/94/3 | DSM
10002
Arcanobacterium pluranimalium VP Lawson et al. 2001 429 M430/94/2,
AJ250959 | CCUG 42575 | CIP 106442 | DSM 13483
Arcanobacterium pyogenes VP (Glage 1903) Pascual Ramos et al. 1997 <-
Actinomyces pyogenes (basonym) 84 | C-100 | ATCC 19411, M29552,
Abc.pyogen | DSM 20630 | NCTC 5224, X79225, Abc.pyoge3
Genus IV. Mobiluncus VP
Mobiluncus curtisii subsp. curtisii VP (T) Spiegel and Roberts 1984
BV345-16 | ATCC 35241, X53186, Mob.curtis
42 8
42 9
208
Mobiluncus curtisii subsp. holmesii VP Spiegel and Roberts 1984 BV376-6

| ATCC 35242 | CCUG 17762 , AJ318409
Mobiluncus mulieris VP Spiegel and Roberts 1984 SV17J | ATCC 35243,

X53187, Mob.mulier
Genus V. Varibaculum VP
Varibaculum cambriense VP (T) Hall et al. 2003 R12359 | CCUG 44998,
AJ491326 | CIP 107344
Suborder IX. Micrococcineae VP
Family I. Micrococcaceae AL
Genus I. Micrococcus AL (T)
Micrococcus luteus AL (T) (Schroeter 1872) Cohn 1872 ATCC 4698,
AF542073 | CCM 169 | DSM 20030, AJ536198 | NCIB 9278 | NCTC
2665
Micrococcus agilis AL Ali-Cohen 1889 -> Arthrobacter agilis ATCC 966
| CCM 2390 | DSM 20550, X80748, Arb.agilis | IMET 11266 | NCDO
983 | NCTC 7509

Micrococcus antarcticus VP Liu et al. 2000 AS 1.2372 | T2, AJ005932
Micrococcus halobius AL Onishi and Kamekura 1972 -> Nesterenkonia
halobia 28-3 | ATCC 21727 | CCM 2591 | DSM 20541, X80747,
Nk.halobia | IMET 11383
Micrococcus kristinae AL Kloos et al. 1974 -> Kocuria kristinae PM 129
| ATCC 27570 | CCM 2690 | DSM 20032, X80749, Kc.kristin | IMET
11367
Micrococcus lylae AL Kloos et al. 1974 JL 178 | ATCC 27566 | CCM 2693 |
DSM 20315, X80750, Mic.lylae | IMET 11368
Micrococcus nishinomiyaensis AL Oda 1935 -> Dermacoccus nishi-
nomiyaensis 59 | OUT 809 | ATCC 29093 | CCM 2140 | DSM 20448 |
IMET 11365
Micrococcus roseus AL Flgge 1886 -> Kocuria rosea ATCC 186 | CCM
679 | DSM 20447 | IMET 11363 | NCTC 7523
Micrococcus sedentarius AL ZoBell and Upham 1944 -> Kytococcus
sedentarius 54 | ATCC 14392 | CCM 314 | DSM 20547, X87755,
Ky.sedntrs | IMET 11362
Micrococcus varians AL Migula 1900 -> Kocuria varians G 33 | ATCC
15306 | CCM 884 | DSM 20033, X87754, Kc.varians | IMET 11364 |
NCDO 777 | NCTC 7564
Genus II. Arthrobacter AL
Arthrobacter globiformis AL (T) (Conn 1928) Conn and Dimmick 1947 168 |
ATCC 8010 | DSM 20124, M23411, Arb.globif | DSM 20124, X80736,
Arb.globi2 | IMET 11240 | NCIB 8907
Arthrobacter agilis VP (Ali-Cohen 1889) Koch et al. 1995 <- Micrococcus
agilis (basonym) W.O. 219 | ATCC 966 | CCM 2390 | DSM 20550,
X80748, Arb.agilis | IMET 11266 | NCDO 983 | NCTC 7509
Arthrobacter albus VP Wauters et al. 2000 CF43, AJ243421 | DSM 13068
Arthrobacter atrocyaneus AL Kuhn and Starr 1960 A 9.2 | ATCC 13752 |
CCM 1645 | DSM 20127, X80746, Arb.atcyan | IMET 10432 | NCIB
9220
Arthrobacter aurescens AL Phillips 1953 579 | ATCC 13344 | CCM 1647 |
DSM 20116, X83405, Arb.auresc | IMET 11247 | NCIB 8912
Arthrobacter chlorophenolicus VP Westerberg et al. 2000 A6, AF102267 |
DSM 12829
Arthrobacter citreus AL Sacks 1954 C7 | ATCC 11624 | CCM 1647 | DSM
20133, X80737, Arb.citrus | IMET 10680 | NCIB 8915
Arthrobacter creatinolyticus VP Hou et al. 1998 GIFU 12498, D88211,
Arb.creati | JCM 10102
209
Arthrobacter crystallopoietes AL Ensign and Rittenberg 1963 ATCC 15481

| CCM 2386 | DSM 20117, X80738, Arb.crystl | IMET 10362 | NCIB
9499
Arthrobacter cumminsii VP Funke et al. 1997 DMMZ 445 | DSM 10493
Arthrobacter duodecadis AL Lochhead 1958 541 | CDA 859 | ATCC 13347
Arthrobacter ?avescens AL Lochhead 1958 -> Aureobacterium ?avescens
401, Y17232 | ATCC 13348 | DSM 20643 | IMET 10367 | NCIB 9221
Arthrobacter ?avus VP Reddy et al. 2000 CMS 19Y, AJ242532 | MTCC

3467
Arthrobacter gandavensis VP Storms et al. 2003 DSM 15046 | LMG 21285,
AJ316140
Arthrobacter histidinolovorans AL Adams 1954 ATCC 11442 | DSM 20115,
X83406, Arb.hstdnl | IMET 10373 | NCIB 9541
Arthrobacter ilicis VP (Mandel et al. 1961) Collins et al. 1982 <-
Corynebacterium ilicis (basonym) Cr-2 | ATCC 14264 | CFBP 1380
| DSM 20138, X83407, Arb.ilicis | ICMP 2607 | LMG 3659 | NCPPB
1228
Arthrobacter luteolus VP Wauters et al. 2000 CF25, AJ243422 | DSM 13067
Arthrobacter methylotrophus VP Borodina et al. 2002 TGA, AF235090 |
Arthrobacter mysorens AL Nand and Rao 1972 ATCC 33408 | DSM 12798,
AJ617482 | NCIB 10583
Arthrobacter nasiphocae VP Collins et al. 2002 M597/99/10, AJ292364 |
CCUG 42953 | CIP 107054
Arthrobacter nicotianae AL (Giovannozzi-Sermanni 1959) emend. Gel-
somino et al. 2004 = Brevibacterium liquifaciens (senior heterotypic
synonym) 94 | ATCC 15236 | ATCC 14929 | CCM 1648 | DSM 20123,
X80739, Arb.nicnae | IMET 10353 | LMG 16159 | NCIB 9458 | NCIMB
9545
Arthrobacter nicotinovorans VP Kodama et al. 1992 ATCC 49919 | DSM
420, X80743, Arb.nicvor | JCM 3874
Arthrobacter oxydans AL Sguros 1954 Xanthum | ATCC 14358 | DSM
20119, X83408, Arb.oxydan | IMET 10684 | NCIB 9333
Arthrobacter pascens AL Lochhead and Burton 1953 B89 | ATCC 13346 |
CCM 1653 | DSM 20545, X80740, Arb.pascns | IMET 10355 | NCIB
8910
Arthrobacter picolinophilus AL Tate and Ensign 1974 = Rhodococcus ery-
thropolis (senior heterotypic synonym) ATCC 27854 | DSM 20665 |
IMET 11248
Arthrobacter polychromogenes AL Schippers-Lammertse et al. 1963 2568
| ATCC 15216 | DSM 20136, X80741, Arb.plychr | IMET 11071 | NCIB
10267
Arthrobacter protophormiae VP (Lysenko 1959) Stackebrandt et al. 1984
<- Brevibacterium protophormiae (basonym) M-570 | ATCC 19271 |
CCEB 282 | DSM 20168, X80745, Arb.protph
Arthrobacter psychrolactophilus VP Loveland-Curtze et al. 2000 B7,
AF134179 | ATCC 700733
Arthrobacter radiotolerans AL Yoshinaka et al. 1973 -> Rubrobacter ra-
diotolerans ATCC 51242 | DSM 46359, X87134, Rbb.radtol | DSM
5868, X98372, Rbb.radto3 | IAM 12072 | IMET 11468 | JCM 2153,
U65647, Rbb.radto2 | NCIMB 11766
Arthrobacter ramosus AL Jensen 1960 I Gm 25 | ATCC 13727 | CCM 1646 |
DSM 20546, X80742, Arb.ramosu | IMET 10685 | NCIB 9066
Arthrobacter rhombi VP Osorio et al. 1999 F98.3HR69, Y15885 | CCUG
38813
210
Arthrobacter roseus VP Reddy et al. 2002 CMS 90r, AJ278870 | DSM

14508 | MTCC 3712
Arthrobacter siderocapsulatus AL Dubinina and Zhdanov 1975 = Pseu-
domonas putida (senior heterotypic synonym) BKM-B N 1122 |
IMET 11317 | VKM-B 1122
Arthrobacter simplex AL (Jensen 1934) Lochhead 1957 -> Pimelobacter
simplex ATCC 6946, M37693, Ncr.simpl2 | CCM 1652 | DSM 20130 |
IMET 10368 | NCIB 8929 | NCTC 4215
Arthrobacter sulfonivorans VP Borodina et al. 2002 ALL, AF235091 |
ATCC BAA-112 | DMS 14002
Arthrobacter sulfureus VP Stackebrandt et al. 1984 36375 | ATCC 19098 |
DSM 20167, X83409, Arb.sulfur | NCIB 10355
Arthrobacter terregens AL Lochhead and Burton 1953 -> Aureobacterium
terregens 88, Y17239 | ATCC 13345 | CCM 2634 | DSM 20449 | IMET
10504 | NCIB 8909
Arthrobacter tumescens AL (Jensen 1934) Conn and Dimmick 1947 ->
Pimelobacter tumescens ATCC 6947 | CCM 1655 | DSM 20308 | IMET
10431 | NCIB 8914, X53215, Trb.tumesn | NCTC 4216
Arthrobacter uratoxydans VP Stackebrandt et al. 1984 U-23 | ATCC 21749
| DSM 20647, X83410, Arb.uratox
Arthrobacter ureafaciens AL (Krebs and Eggleston 1939) Clark 1955 NC

| ATCC 7562 | CCM 1644 | DSM 20126, X80744, Arb.ureafc | IMET
11370 | NCIB 7811

Arthrobacter variabilis AL Mller 1961 -> Corynebacterium variabile FK
31 | ATCC 15753 | CCM 1565 | DSM 20132, AJ222815 | IMET 10350 |
NCIB 9455
Arthrobacter viscosus AL Gasdorf et al. 1965 ATCC 19584 | DSM 7307 |
NCIMB 9729 | NRRL B-1973
Arthrobacter woluwensis VP Funke et al. 1997 CUL 1808 | DSM 10495
Genus III. Citricoccus VP
Citricoccus muralis VP (T) Altenburger et al. 2002 4-0, AJ344143 | CCM
4981 | DSM 14442
Genus IV. Kocuria VP
Kocuria rosea VP (T) (Flgge 1886) Stackebrandt et al. 1995 <- Micrococ-
cus roseus (basonym) = Kocuria erythromyxa (junior heterotypic syn-
onym) ATCC 186 | CCM 679 | DSM 20447 | IMET 11363 | NCTC 7523
Kocuria erythromyxa VP (Brooks and Murray 1981) Rainey et al. 1997
= Kocuria rosea (senior heterotypic synonym) <- Deinococcus ery-
thromyxa (basonym) KSE | ATCC 187, Y11330, Kc.rosea2 | CCM 706
| DSM 11630 | UWO 1045
Kocuria kristinae VP (Kloos et al. 1974) Stackebrandt et al. 1995 <- Micro-
coccus kristinae (basonym) PM 129 | ATCC 27570 | CCM 2690 | DSM
20032, X80749, Kc.kristin | IMET 11367
Kocuria palustris VP Kovcs et al. 1999 TAGA27, Y16263 | DSM 11925
Kocuria polaris VP Reddy and al. 2003 CMS 76or, AJ278868 | DSM 14382
| MTCC 3702
Kocuria rhizophila VP Kovcs et al. 1999 TA68, Y16264 | DSM 11926

Kocuria varians VP (Migula 1900) Stackebrandt et al. 1995 <- Micrococ-
cus varians (basonym) G 33 | ATCC 15306 | CCM 884 | DSM 20033,
X87754, Kc.varians | IMET 11364 | NCDO 777 | NCTC 7564
Genus V. Nesterenkonia VP
Nesterenkonia halobia VP (T) (Onishi and Kamekura 1972) Stackebrandt et
al. 1995 <- Micrococcus halobius (basonym) 28-3 | ATCC 21727 |
CCM 2591 | DSM 20541, X80747, Nk.halobia | IMET 11383
211
Nesterenkonia lacusekhoensis VP Collins et al. 2002 IFAM EL-30, ,

AJ290397 | DSM 12544 | CIP107030
Genus VI. Renibacterium VP
Renibacterium salmoninarum VP (T) Sanders and Fryer 1980 Lea-1-74 |
ATCC 33209, X51601, Ren.salmon | DSM 20767
Genus VII. Rothia AL
Rothia dentocariosa AL (T) (Onishi 1949) Georg and Brown 1967 ATCC
17931, M59055, Rot.dentoc | CDC X599 | CIP 81.83 | DSM 46363 |
NBRC 12531 | IMET 11515 | JCM 3067 | KCC A-0067 | NCTC 10817
Rothia amarae VP Fan et al. 2002 J18 | AS 4.1721 | JCM 11375, AY043359
Rothia mucilaginosa VP (Bergan and Kocur 1982) Collins et al. 2000 <-
Stomatococcus mucilaginosa (basonym) DSM 20746, X95483
Rothia nasimurium VP Collins et al. 2000 CCUG 35957, AJ131121
Genus VIII. Stomatococcus VP
Stomatococcus mucilaginosus VP (T) Bergan and Kocur 1982 -> Rothia mu-
cilliginosa 5762/67 | ATCC 25296 | CCM 2417 | DSM 20746 | NCTC
10663
Genus IX. Yania VP
Yania halotolerans VP Li et al. 2004 YIM 70085, AY228479 | CCTCC
AA001023 | DSM 15476
Family II. Bogoriellaceae VP
Genus I. Bogoriella VP (T)
Bogoriella caseilytica VP (T) Groth et al. 1997 2017-12 | DSM 11294 | HKI
0088, Y09911, Bg.caseily
Family III. Rarobacteraceae VP
Genus I. Rarobacter VP (T)
Rarobacter faecitabidus VP (T) Yamamoto et al. 1988 YLM-1, Y17870 |
ATCC 49628 | DSM 4813 | NBRC 14760 | JCM 6097
Rarobacter incanus VP Yamamoto et al. 1994 YLM 32 | ATCC 51544 | CIP
104132 | DSM 10596 | NBRC 16558, AB056129 | JCM 6350
Family IV. Sanguibacteraceae VP
Genus I. Sanguibacter VP (T)
Sanguibacter keddieii VP (T) Fernndez-Garayzbal et al. 1995 ST-74,
X79450, Sgb.keddie | ATCC 51767 | CECT 4540 | DSM 10542 | NCFB
3025
Sanguibacter inulinus VP Pascual et al. 1996 ST-50, X79451, Sgb.inuli2 |
NCFB 3024
Sanguibacter suarezii VP Fernndez-Garayzbal et al. 1995 ST-26,
X79452, Sgb.suarez | ATCC 51766 | CECT 4539 | DSM 10543 | NCFB
3023
Family V. Brevibacteriaceae AL
Genus I. Brevibacterium AL (T)
Brevibacterium linens AL (T) (Wolff 1910) Breed 1953 56b | ATCC 9172 |
DSM 20425, X77451, Brb.linen2 | IMET 11075 | NCIB 9909
Brevibacterium acetylicum AL (Levine and Soppeland 1926) Breed 1957
-> Exiguobacterium acetylicum 1005 | ATCC 953 | DSM 20416 | IMET
11072 | NCIB 9889, X70313, Exg.acety2
Brevibacterium albidum AL Komagata and Iizuka 1964 = Curtobacterium
albidum (homotypic synonym) ATCC 15831
Brevibacterium ammoniagenes AL (Cooke and Keith 1927) Breed 1953 ->
Corynebacterium ammoniagenes AJ 1443 | ATCC 6871 | DSM 20306
| IMET 11243 | NCIB 8143 | NCTC 2398
Brevibacterium avium VP Pascual and Collins 1999 NCIMB 703055,

Y17962
212
Brevibacterium casei VP Collins et al. 1983 CMD1 | ATCC 35513 | DSM

20657 | IMET 10997 | NCDO 2048, X76564, Brb.casei
Brevibacterium citreum AL Komagata and Iizuka 1964 = Curtobacterium
citreum (homotypic synonym) ATCC 15828 | CCM 2297 | DSM
20528, X77436, Cub.citreu | IAM 1614 | IMET 10359 | NCIB 10702
Brevibacterium divaricatum AL Su and Yamada 1960 = Corynebacterium
glutamicum (senior heterotypic synonym) ATCC 14020 | DSM 20297
| IMET 11073 | NCIB 9379
Brevibacterium epidermidis VP Collins et al. 1983 D731 | DSM 20660 |

IMET 10998 | NCDO 2286, X76565, Brb.epider
Brevibacterium fermentans AL Chatelain and Second 1966 CIP 6611 | IMET
19689
Brevibacterium frigoritolerans AL Delaporte and Sasson 1967 6720 | WS
1085 | ATCC 25097 | DSM 8801
Brevibacterium halotolerans AL Delaporte and Sasson 1967 6721 | WS 1087
| ATCC 25096 | DSM 8802
Brevibacterium imperiale AL (Steinhaus 1941) Breed 1953 -> Microbac-

terium imperiale 72 | ATCC 8365 | DSM 20530, X77442, Mbm.imper2
| IAM 1654 | IMET 10714 | NCIB 9888
Brevibacterium incertum AL (Steinhaus 1941) Breed 1953 -> Desemzia

incerta ATCC 8363 | DSM 20581, Y14650, Dsz.incert | IMET 11374 |
NCIB 9892
Brevibacterium iodinum VP Collins et al. 1981 ATCC 49514 | DSM 20626,
X83813, Brb.iodin2 | IMET 10995 | NCDO 613, X76567, Brb.iodini
Brevibacterium liquefaciens AL Okabayashi and Masuo 1960 = Arthrobac-
ter nicotianae (junior heterotypic synonym) ATCC 14929 | DSM
20579, AJ251417 | NCIB 9545
Brevibacterium luteum AL Komagata and Iizuka 1964 = Curtobacterium lu-
teum (homotypic synonym) ATCC 15830 | IAM 1623 | IMET 10360
Brevibacterium lyticum AL Takayama et al. 1960 ATCC 15921
Brevibacterium mcbrellneri VP McBride et al. 1994 E2cr | ATCC 49030,
X93594, Brb.mcbrel | DSM 9583
Brevibacterium otitidis VP Pascual et al. 1996 A37/73, X93593, Brb.otidit
| DSM 10718 | NCFB 3053, X93593, Brb.otidit
Brevibacterium oxydans AL Chatelain and Second 1966 -> Microbac-

terium oxydans X98, Y17227 | CIP 6612 | DSM 20578 | NCIB 9944
Brevibacterium paucivorans VP Wauters et al. 2001 CF62, AJ251463 |
DSM 13657 | LMG 19814
Brevibacterium protophormiae AL Lysenko 1959 -> Arthrobacter pro-
tophormiae M-570 | ATCC 19271 | CCEB 282 | DSM 20168, X80745,
Arb.protph
Brevibacterium pusillum AL Iizuka and Komagata 1965 = Curtobacterium
pusillum (homotypic synonym) ATCC 19096 | IMET 11077
Brevibacterium saperdae AL Lysenko 1959 = Curtobacterium saper-
dae (homotypic synonym) -> Aureobacterium saperdae 48-1-4 |
ATCC 19272 | CCEB 366 | DSM 20169 | NBRC 15038, AB004719,
Mbm.saperd | IMET 11076
Brevibacterium stationis AL (ZoBell and Upham 1944) Breed 1953 622 |
ATCC 14403 | DSM 20302
Brevibacterium testaceum AL Komagata and Iizuka 1964 = Curto-
bacterium testaceum (homotypic synonym) -> Aureobacterium
testaceum Rp-3 | ATCC 15829 | CCM 2299 | DSM 20166, X77445,
Mbm.testac | IMET 10361
213
Brevibacterium vitarumen AL (Bechdel et al. 1928) Breed 1957 ->

Corynebacterium vitaeruminis ATCC 10234 | DSM 20294 | IMET
11372 | NCIB 9291
Family VI. Cellulomonadaceae VP
Genus I. Cellulomonas AL (T)
Cellulomonas ?avigena AL (T) (Kellerman and McBeth 1912) Bergey et al.
1923 134 | ATCC 482 | CCM 1926 | DSM 20109, X83799, Cllm.?avi |
IMET 10357 | NCIB 8073, X79463, Cllm.?av2
Cellulomonas biazotea AL (Kellerman et al. 1913) Bergey et al. 1923 127
| ATCC 486 | DSM 20112, X79462, Cllm.biaz2 | DSM 20112, X83802,
Cllm.biazo | IMET 10473 | NCDO 1654 | NCIB 8077

Cellulomonas cartae VP Stackebrandt and Kandler 1980 = Cellulomonas
cellulans (senior heterotypic synonym) ATCC 21681 | DSM 20106 |
IMET 10715 | NCIB 11440 430
Cellulomonas cellasea AL (Kellerman et al. 1913) Bergey et al. 1923 124 |
ATCC 487 | CCM 1925, X83804, Cllm.clsea | CCM 1925 | DSM 20118,
X79459, Cllm.clse2 | NCIB 8078
Cellulomonas cellulans VP (Metcalf and Brown 1957) Stackebrandt and
Keddie 1988 <- Nocardia cellulans (basonym) = Cellulomonas cartae
(junior heterotypic synonym) -> Cellulosimicrobium cellulans ATCC
12830 | DSM 43189 | DSM 43879, X79455, Cllm.cllu2 | DSM 43879,
X83809, Cllm.cllul | IMET 7404 | NCIB 8868
Cellulomonas fermentans VP Bagnara et al. 1985 M | ATCC 43279 | CIP
103003 | DSM 3133, X79458, Cllm.ferm2 | DSM 3133, X83805,
Cllm.fermn
Cellulomonas ?mi AL (McBeth and Scales 1913) Bergey et al. 1923 133 |
ATCC 484 | DSM 20113, X79460, Cllm.?mi2 | DSM 20113, X83803,
Cllm.? mi | IMET 10687 | NCIB 8980 | NCTC 7547
Cellulomonas gelida AL (Kellerman et al. 1913) Bergey et al. 1923 126
| ATCC 488 | DSM 20111, X83800, Cllm.gelid | IMET 11078 | NCIB
8076, X79461, Cllm.geli2

Cellulomonas hominis VP Funke et al. 1996 DMMZ CE40, X82598,
Cllm.homin | DSM 9581
Cellulomonas humilata VP (Gledhill and Casida 1969) Collins and Pascual
2000 <- Actinomyces humiferus (basonym) ATCC 25174, X82449
Cellulomonas iranensis VP Elberson et al. 2000 O, AF064702 | ATCC
700643
Cellulomonas persica VP Elberson et al. 2000 I, AF064701 | ATCC 700642
Cellulomonas turbata VP (Erikson 1954) Stackebrandt et al. 1983 <-
Oerskovia turbata (basonym) -> Oerskovia turbata 891 | AB 1476 |
N32 | Oerskov 27 | ATCC 25835 | CIP 100331 | DSM 20577, X83806,
Cllm.turba | IMET 7405 | JCM 3160 | NCIB 10587, X79454, Cllm.turb1
Cellulomonas uda AL (Kellerman et al. 1913) Bergey et al. 1923 136 |
ATCC 491 | DSM 20107, X83801, Cllm.uda | NCIB 8200, X79457,
Cllm.uda2
Cellulomonas xylanilytica VP Rivas et al. 2004 XIL11, AY303668 | CECT
5729 | LMG 21723
Genus II. Oerskovia AL 431
Oerskovia turbata AL (T) (Prauser et al. 1970) Stackebradt et al. 2002 -> Cel-
lulomonas turbata <- Cellulomonas turbata (basonym) 891 | AB 1476
| N32 | Oerskov 27 | ATCC 25835 | CIP 100331 | DSM 20577, X83806,
Cllm.turba | IMET 7405 | JCM 3160 | NCIB 10587, X79454, Cllm.turb1

43 0
In the ?rst edition of Be rg eys Ma nual of Syste mat ic B ac terio log y, S tac ke brandt an d Ked die c ons id ered Cellu lom onas ce llula ns to be a
senior syn onym of C. cartae. H owever, this propo sal h as nev er b een va lidly publis hed .
43 1
S tacke brandt e t al. have prop osed the re introd uction and e men dation of t he ge nus Oe rs k ov ia. Th is propos al requires tra nsf er o f the t ype
specie s back f ro m Cellulomo nas.
214
Oerskovia enterophila VP (Jager et al. 1983) Stackebrandt et al. 2002

DFA-19 | ATCC 35307 | DSM 43852, X83807, Prm.entphl | HMGB
B1078 | NBRC 14650 | IMET 7687 | JCM 7350 | NRRL B-16223
Oerskovia jenensis VP Stackebrandt et al. 2002 CIP 100330 | DSM 46000,
AJ314848
Oerskovia paurometabola VP Stackebrandt et al. 2002 DSM 14281,
AJ314851 | LMG 20385
Oerskovia xanthineolytica AL Lechevalier 1972 = Cellulosimicrobium cel-
lulans (junior homotypic synonym) ATCC 27402 | IMET 7383 432
Genus III. Tropheryma VP
Tropheryma whipplei VP (T) La Scola et al. 2001 433 Twist-Marseille,
AF251035 | CNCM I-2202
Family VII. Dermabacteraceae VP
Genus I. Dermabacter VP (T)
Dermabacter hominis VP (T) Jones and Collins 1989 S69 | ATCC 49369 |
DSM 7083, X91034, Drb.homin2 | NCFB 2769, X76728, Drb.homini
Genus II. Brachybacterium VP
Brachybacterium faecium VP (T) Collins et al. 1988 Schefferle 6-10 |
ATCC 43885 | DSM 4810, X83810, Bcb.faecim | DSM 4810, X91032,
Bcb.faeci2 | IMET 11352 | NCIB 9860
Brachybacterium alimentarium VP Schubert et al. 1996 CNRZ 925,
X91031, Bcb.alimnt | DSM 10672
Brachybacterium conglomeratum VP Takeuchi et al. 1995 5 2 | AJ 1015 |
Komagata 5-2 | CCM 2589 | DSM 10241 | NBRC 154
Brachybacterium fresconis VP Heyrman et al. 2002 DSM 14564 | LMG
20336, AJ415378
Brachybacterium muris VP Buczolits et al. 2003 C3H-21, AJ537574 | CCM
7047 | DSM 14560
Brachybacterium nesterenkovii VP Gvozdyak et al. 1992 35 | DSM 9573,
X91033, Bcb.nester | IMV Ac-752
Brachybacterium paraconglomeratum VP Takeuchi et al. 1995 7 11
| ATCC 51843 | DSM 46341 | NBRC 15224 | IMET 11353 | LMG
198610, AJ415377 | NCIB 9861

Brachybacterium rhamnosum VP Takeuchi et al. 1995 H-6S | ATCC 15203
| DSM 10240 | NBRC 15203
Brachybacterium sacelli VP Heyrman et al. 2002 DSM 14566 | LMG

20345, AJ415384
Brachybacterium tyrofermentans VP Schubert et al. 1996 CNRZ 926,
X91657, Bcb.tyfrmn | DSM 10673
Family VIII. Dermatophilaceae AL
Genus I. Dermatophilus AL (T)
Dermatophilus congolensis AL (T) (Van Saceghem 1915) Gordon 1964 A-4
| ATCC 14637, M59057, Der.congol | DSM 44180 | JCM 8106
Dermatophilus chelonae VP Masters et al. 1995 W16 | ATCC 51576 | CIP

104541 | DSM 44178, AJ243919 | JCM 9706
Genus II. Kineosphaera VP
Kineosphaera limosa VP (T) Liu et al. 2002 Lpha5, AF109792 | DSM 14548
| JCM 11399
Family IX. Dermacoccaceae VP

Genus I. Dermacoccus VP (T)
43 2
B eca use the type species of the g enus Oe rskovia has bee n tra ns ferre d to the Ce llulo mona s, all ot her spe cies m us t be trans ferred to oth er
ge nera. Yet, no proposal t o transfer Oe rskovia xanth ine olytica h as b een m ade to d ate. Stac k ebrand t et al. propo sed com binin g O. x an thin e-
olyt ica, Brevib act erium fe rm enta ns, B re vibacterium lyticum , N oca rd ia c ellulans , a nd Cellulomo nas c artae into a single s pe cies : Cellulomo nas
cellulans. Ho wever, o nly th e transfer o f Nocardia cellulans to Cellulomo nas as Cellu lom onas c ellulans ha s been va lidly pu blis hed.
43 3
215
Dermacoccus nishinomiyaensis VP (T) (Oda 1935) Stackebrandt et al. 1995

<- Micrococcus nishinomiyaensis (basonym) 59 | OUT 8094 | ATCC
29093 | CCM 2140 | DSM 20448 | IMET 11365
Genus II. Demetria VP
Demetria terragena VP (T) Groth et al. 1997 2002-46 | DSM 11295 | HKI
0089, Y14152, Dm.terragn
Genus III. Kytococcus VP
Kytococcus sedentarius VP (T) (ZoBell and Upham 1944) Stackebrandt et al.
1995 <- Micrococcus sedentarius (basonym) 54 | ATCC 14392 | CCM
314 | DSM 20547, X87755, Ky.sedntrs | IMET 11362
Kytococcus schroeteri VP Becker et al. 2002 Muenster 2000, AJ297722 |
CCM 4918 | DSM 13884
Family X. Intrasporangiaceae VP
Genus I. Intrasporangium AL (T)
Intrasporangium calvum AL (T) Kalakoutskii et al. 1967 No.7 KIP | ATCC
23552 | CUB 430 | DSM 43043 | NBRC 12989, D85486, Isp.calvum |
IMET 7816 | JCM 3097 | KCC A-0097 | NCIB 10167
Genus II. Arsenicicoccus VP
Arsenicicoccus bolidensis VP Collins et al. 2004 CCUG 47306, AJ558133
| DSM 14745
Genus III. Janibacter VP

Janibacter limosus VP (T) Martin et al. 1997 2003-10 | DSM 11140, Y08539,
Jan.limosu | HKI 83 | NBRC 16128
Janibacter brevis VP Imamura et al. 2000 10N, AB016438 | DSM 13953,
AJ310085 | IAM 14781
Janibacter terrae VP Yoon et al. 2000 CS12, AF176948 | JCM 10705 |
KCCM 80001
Genus IV. Knoellia VP
Knoellia sinensis VP (T) Groth et al. 2002 HKI 0119, AJ294412 | CIP 106775
| DSM 12331
Knoellia subterranea VP Groth et al. 2002 HKI 0120, AJ294413 | CIP

106776 | DSM 12332
Genus V. Ornithinicoccus VP
Ornithinicoccus hortensis VP (T) Groth et al. 1999 DSM 12335 | HKI 0125,
Y17869
Genus VI. Ornithinimicrobium VP
Ornithinimicrobium humiphilum VP (T) Groth et al. 2001 HKI 0124,
AJ277650 | CIP 106634 | DSM 12362, AJ277650
Genus VII. Nostocoidia VP
Candidatus "Nostocoidia limicola" VP (T) Blackall et al. 2000
X85211X85212Y14597Y14595Y14596
Genus VIII. Terrabacter VP
Terrabacter tumescens VP (T) (Jensen 1934) Collins et al. 1989 <-
Pimelobacter tumescens (basonym) ATCC 6947 | CCM 1655 | DSM
20308, X83812, Trb.tumes2 | IAM 12345 | IMET 10431 | JCM 1365 |
NCIB 8914, X53215, Trb.tumesn | NCTC 4216
Genus IX. Terracoccus VP
Terracoccus luteus VP (T) Prauser et al. 1997 CCM 4701 | DSM 44267,
Y11928, Trr.luteus | NBRC 16165 | IMET 7848
Genus X. Tetrasphaera VP
Tetrasphaera japonica VP (T) Maszenan et al. 2000 T1-X7, AF125092 |
ACM 5116
Tetrasphaera australiensis VP Maszenan et al. 2000 Ben 109, AF125091 |
ACM 5117
216
Tetrasphaera elongata VP Hanada et al. 2002 Lp2, AB030911 | DSM 14184

| JCM 11141
Family XI. Jonesiaceae VP

Genus I. Jonesia VP (T)
Jonesia denitri?cans VP (T) (Prevot 1961) Rocourt et al. 1987 <- Listeria
denitri?cans (basonym) 55134, X78420, X83811 | ATCC 14870 | CIP
55134 | DSM 20603, X83811, Jns.denitr | IMET 7763 | NCTC 10816,
X78420, Jns.denit2
Family XII. Microbacteriaceae VP
Genus I. Microbacterium AL (T)
Microbacterium lacticum AL (T) Orla-Jensen 1919 ATCC 8180 | DSM
20427, X77441, Mbm.lacti2 | NBRC 14135, D21343, Mbm.lactic |
IMET 10712 | NCDO 747 | NCIB 8540
Microbacterium aerolatum VP Zlamala et al. 2002 V-73, AJ309929 | DSM
14217 | CCM 4955
Microbacterium arabinogalactanolyticum VP (Yokota et al. 1993) Takeuchi
and Hatano 1998 <- Aureobacterium arabinogalactanolyticum (ba-
sonym) M-2 | CCM 4370 | CIP 103814 | DSM 8611 | NBRC 14344,
AB004715, Mbm.argaly
Microbacterium arborescens VP Imai et al. 1985 ATCC 4358 | DSM 20754,
X77443, Mbm.arbor2 | NBRC 3750, D21339, Mbm.arbors
Microbacterium aurantiacum VP Takeuchi and Hatano 1998 ATCC 49090
| DSM 12506 | NBRC 15234, AB004726, Mbm.aurant | NCFB 2288
Microbacterium aurum VP Yokota et al. 1993 H-5 | ATCC 51345 | DSM

8600 | NBRC 15204, D21340, Mbm.aurum
Microbacterium barkeri VP (Collins et al. 1983) Takeuchi and Hatano 1998
<- Aureobacterium barkeri (basonym) 7 | ATCC 15954 | CCM 1928 |
DSM 20145, X77446, Mbm.barker | IMET 10688 | NCIB 9658
Microbacterium chocolatum VP Takeuchi and Hatano 1998 BUCSAV 207
| DSM 12507 | NBRC 3758, AB004725, Mbm.choclt | NCIB 8181
Microbacterium dextranolyticum VP Yokota et al. 1993 M-73 | ATCC

51344 | DSM 8607 | NBRC 14592, D21341, Mbm.dexlyt
Microbacterium esteraromaticum VP (Omelianski 1923) Takeuchi and
Hatano 1998 <- Aureobacterium esteraromaticum (basonym) ,
Y17231 ATCC 8091 | CCM 4371 | DSM 8609 | NBRC 3751
Microbacterium ?avescens VP (Lochhead 1958) Takeuchi and Hatano 1998
<- Aureobacterium ?avescens (basonym) 401 | ATCC 13348 | DSM
20643 | NBRC 15039, AB004716, Mbm.?aves | IMET 10367 | NCIB
9221
Microbacterium foliorum VP Behrendt et al. 2001 P 333/02, AJ249780 |
DSM 12966 | LMG 19580
Microbacterium gubbeenense VP Brennan et al. 2001 DPC 5286 | LMG
S-19263, AF263563 | NCIMB 30129
Microbacterium halophilum VP Takeuchi and Hatano 1998 N 76 | DSM
12508 | NBRC 16062, AB004714, Mbm.haloph
Microbacterium hominis VP Takeuchi and Hatano 1998 DSM 12509 |
NBRC 15708, AB004727, Mbm.homini | LCDC 84-209
Microbacterium imperiale VP (Steinhaus 1941) Collins et al. 1983 <-
Brevibacterium imperiale (basonym) 72 | ATCC 8365 | DSM 20530,
X77442, Mbm.imper2 | IAM 1654 | NBRC 12610, D21342, Mbm.im-
peri | IMET 10714 | NCIB 9888
Microbacterium keratanolyticum VP (Yokota et al. 1993) Takeuchi and
Hatano 1998 <- Aureobacterium keratanolyticum (basonym) ATCC
35057 | CCM 4375 | CIP 103815 | DSM 8606, Y14786, Mbm.kerly2 |
NBRC 13309, AB004717, Mbm.kerlyt
217
Microbacterium ketosireducens VP Takeuchi and Hatano 1998 DSM 12510

| NBRC 14548, AB004724, Mbm.ketred
Microbacterium kitamiense VP Matsuyama et al. 1999 Kitami C2,

AB013907 | JCM 10270
Microbacterium laevaniformans VP Collins et al. 1983 1 | ATCC 15953 |
CCM 1929 | DSM 20140 | NBRC 14471, D21344, Mbm.levfor | IMET
10713 | NCIB 9659
Microbacterium liquefaciens VP (Collins et al. 1983) Takeuchi and Hatano
1998 <- Aureobacterium liquefaciens (basonym) Mbm 15 | ATCC
43647 | DSM 20638, X77444, Mbm.liqfac | IMET 11374 | NCIB 11509
Microbacterium luteolum VP (Yokota et al. 1993) Takeuchi and Hatano
1998 <- Aureobacterium luteolum (basonym) 69 | ATCC 51474 | DSM
20143 | NBRC 15074, AB004718, Mbm.luteol | NCIMB 9568
Microbacterium maritypicum VP (ZoBell and Upham 1944) Takeuchi and
Hatano 1998 <- Flavobacterium marinotypicum (basonym) ATCC
19260 | DSM 12512 | NBRC 15779 | NCMB 1050
Microbacterium oxydans VP (Chatelain and Second 1966) Schumann et al.
1999 <- Brevibacterium oxydans (basonym) , Y17227 X98 | CIP 6612
| DSM 20578 | NCIB 9944
Microbacterium paraoxydans VP Laf?neur et al. 2003 CF36, AJ491806 |

CCUG 46601 | DSM 15019
Microbacterium phyllosphaerae VP Behrendt et al. 2001 P 369/06,
AJ277840 | DSM 13468 | LMG 19581
Microbacterium resistens VP (Funke et al. 1998) Behrendt et al. 2001
<- Aureobacterium resistens (basonym) CSM 11986 | DMMZ 1710,
Y14699 | DSM 11986
Microbacterium saperdae VP (Lysenko 1959) Takeuchi and Hatano 1998
<- Aureobacterium saperdae (basonym) 48-1-4 | ATCC 19272 |
CCEB 366 | DSM 20169 | NBRC 15038, AB004719, Mbm.saperd |
IMET 11076
Microbacterium schleiferi VP (Yokota et al. 1993) Takeuchi and Hatano
1998 <- Aureobacterium schleiferi (basonym) S 110 | ATCC 51473 |
DSM 20489 | NBRC 15075, AB004723, Mbm.schlfr
Microbacterium terrae VP (Yokota et al. 1993) Takeuchi and Hatano 1998
<- Aureobacterium terrae (basonym) ATCC 51476 | CCM 4374 | CIP
103816 | DSM 8610 | NBRC 15300, Y17238, AB004720
Microbacterium terregens VP (Lochhead and Burton 1953) Takeuchi and
Hatano 1998 <- Aureobacterium terregens (basonym) 88 | ATCC
13345 | CCM 2634 | DSM 20449 | NBRC 12961, AB004721, Mbm.tr-
rgns | IMET 10504 | NCIB 8909
Microbacterium testaceum VP (Komagata and Iizuka 1964) Takeuchi and
Hatano 1998 <- Aureobacterium testaceum (basonym) Rp-3 | ATCC
15829 | CCM 2299 | DSM 20166, X77445, Mbm.testac | IMET 10361
Microbacterium thalassium VP Takeuchi and Hatano 1998 DSM 12511 |
NBRC 16060, AB004713, Mbm.thlass
Microbacterium trichothecenolyticum VP (Yokota et al. 1993) Takeuchi and
Hatano 1998 <- Aureobacterium trichothecenolyticum (basonym)
114-2 | ATCC 51475 | CCM 4373 | CIP 103817 | DSM 8608 | NBRC
15077, AB004722, Mbm.trtecl | JCM 1358
Microbacterium ulmi VP Rivas et al. 2004 XIL02, AY062021 | LMG 20991
| CECT 5976
Genus II. Agreia VP

Agreia bicolorata VP (T) Evtushenko et al. 2001 DL-4 | DSM 14575 | UCM
Ac-620 | VKM Ac-1804, AF159363
218
Agreia pratensis VP (Behrendt et al. 2002) Schumann et al. 2003 <- Subter-
cola pratensis (basonym) P 229/10, AJ310412 | DSM 14246 | LMG
21000
Genus III. Agrococcus VP
Agrococcus jenensis VP (T) Groth et al. 1996 2002-39/1 | ATCC 700087 |
DSM 9580, X92492, Ac.jenensi | NBRC 16126
Agrococcus baldri VP Zlamala et al. 2002 V-108, AJ309928 | DSM 14215
| CCM 4953
Agrococcus citreus VP Wieser et al. 1999 D-1/1a | DSM 12453, AJ012826

Genus IV. Agromyces AL
Agromyces ramosus AL (T) Gledhill and Casida 1969 PSU 38L | ATCC 25173
| DSM 43045, X77447, Agmy.ramos | IMET 11027 | KCC A-0108
Agromyces aurantiacus VP Li et al. 2003 YIM 21741, AF389342 | AS

4.1717 | CCTCC 001012 | DSM 14598
Agromyces bracchium VP Takeuchi and Hatano 2001 65 | NBRC 16238,
AB023359 | VKM Ac-2088
Agromyces cerinus subsp. cerinus VP Zgurskaya et al. 1992 ATCC 51762
| DSM 8595, X77448, Agmy.cerin | IMET 11525 | JCM 9083, D45060,
Agmy.ceri2 | VKM Ac-1340

Agromyces cerinus subsp. nitratus VP Zgurskaya et al. 1992 ATCC 51763
| DSM 8596 | IMET 11532, AY277619 | VKM Ac-1351
Agromyces fucosus subsp. fucosus VP Zgurskaya et al. 1992 ATCC 51764

| DSM 8597 | IMET 11529 | VKM Ac-1345
Agromyces fucosus subsp. hippuratus VP Zgurskaya et al. 1992 ATCC

51765 | DSM 8598 | IMET 11533 | JCM 9086, D45061, Agmy.fuco2 |
VKM Ac-1352
Agromyces luteolus VP Takeuchi and Hatano 2001 8 | NBRC 16235,
AB023356 | VKM Ac-2085
Agromyces mediolanus VP Suzuki et al. 1996 ATCC 14004 | DSM 20152,
X77449, Agmy.medio | JCM 3346 | NCIMB 7206
Agromyces rhizosphaerae VP Takeuchi and Hatano 2001 14 | NBRC 16236,
AB023357 | VKM Ac-2085
Genus V. Aureobacterium VP
Aureobacterium liquefaciens VP (T) (ex Orla-Jensen 1919) Collins et al.
1983 -> Microbacterium liquefaciens Mbm 15 | ATCC 43647 | DSM
20638, X77444, Mbm.liqfac | IMET 11374 | NCIB 11509
Aureobacterium arabinogalactanolyticum VP Yokota et al. 1993 -> Mi-
crobacterium arabinogalactanolyticum M-2 | CCM 4370 | CIP 103814
| DSM 8611 | NBRC 14344, AB004715, Mbm.argaly
Aureobacterium barkeri VP (ex Dias et al. 1962) Collins et al. 1983 ->
Microbacterium barkeri 7 | ATCC 15954 | CCM 1928 | DSM 20145,
X77446, Mbm.barker | IMET 10688 | NCIB 9658
Aureobacterium esteraromaticum VP (Omelianski 1923) Yokota et al.
1993 <- Flavobacterium esteraromaticum (basonym) -> Microbac-
terium esteraromaticum ATCC 8091, Y17231 | CCM 4371 | DSM
8609 | NBRC 3751
Aureobacterium ?avescens VP (Lochhead 1958) Collins et al. 1983 <-
Arthrobacter ?avescens (basonym) -> Microbacterium ?avescens
401, Y17232 | ATCC 13348 | DSM 20643 | NBRC 15039, AB004716,
Mbm.?aves | IMET 10367 | NCIB 9221
Aureobacterium keratanolyticum VP Yokota et al. 1993 -> Microbac-
terium keratanolyticum ATCC 35057 | CCM 4375 | CIP 103815 | DSM
8606, Y14786, Mbm.kerly2 | NBRC 13309, AB004717, Mbm.kerlyt
219
Aureobacterium luteolum VP Yokota et al. 1993 -> Microbacterium lu-

teolum 69 | ATCC 51474 | DSM 20143 | NBRC 15074, AB004718,
Mbm.luteol | NCIMB 9568
Aureobacterium resistens VP Funke et al. 1998 -> Microbacterium re-
sistens CCUG 38312 | DMMZ 1710, Y14699, Aub.resist | DSM 11986
Aureobacterium saperdae VP (Lysenko 1959) Collins et al. 1983 <-
Brevibacterium saperdae (basonym) <- Curtobacterium saperdae
(basonym) -> Microbacterium saperdae 48-1-4 | ATCC 19272 |
CCEB 366 | DSM 20169 | NBRC 15038, AB004719, Mbm.saperd |
IMET 11076 434
Aureobacterium schleiferi VP Yokota et al. 1993 -> Microbacterium
schleiferi S 110 | ATCC 51473 | DSM 20489 | NBRC 15075,
AB004723, Mbm.schlfr
Aureobacterium terrae VP Yokota et al. 1993 -> Microbacterium terrae
ATCC 51476, Y17238 | CCM 4374 | CIP 103816 | DSM 8610 | NBRC
15300, Y17238, AB004720
Aureobacterium terregens VP (Lochhead and Burton 1953) Collins et al.
1983 <- Arthrobacter terregens (basonym) -> Microbacterium ter-
regens 88, Y17239 | ATCC 13345 | CCM 2634 | DSM 20449 | NBRC
12961, AB004721, Mbm.trrgns | IMET 10504 | NCIB 8909
Aureobacterium testaceum VP (Komagata and Iizuka 1964) Collins et al.
1983 <- Brevibacterium testaceum (basonym) <- Curtobacterium tes-
taceum (basonym) -> Microbacterium testaceum Rp-3 | ATCC 15829
| CCM 2299 | DSM 20166, X77445, Mbm.testac | IMET 10361 435
Aureobacterium trichothecenolyticum VP Yokota et al. 1993 -> Microbac-

terium trichothecenolyticum 114-2 | ATCC 51475 | CCM 4373 | CIP
103817 | DSM 8608 | NBRC 15077, AB004722, Mbm.trtecl | JCM 1358
Genus VI. Clavibacter VP
Clavibacter michiganensis subsp. michiganensis VP (T) (Smith 1910) Davis
et al. 1984 <- Corynebacterium michiganense subsp. michiganense
(basonym) SO5 | CFBP 2352 | DSM 46364, X77435, Clv.michg2
| ICMP 2550 | ICPB CM 177 | IMET 11518 | LMG 7333, U09762,
Clv.michg6 | NCPPB 2979 | PDDCC 2550

Clavibacter michiganensis subsp. insidiosus VP (McCulloch 1925) Davis
et al. 1984 <- Corynebacterium michiganense subsp. insidiosum (ba-
sonym) ATCC 10253 | CFBP 2404 | DSM 20157 | ICMP 2621 | LMG
3663, U09761, Clv.michg7 | NCPPB 1109
Clavibacter michiganensis subsp. nebraskensis VP (Vidaver and Mandel
1974) Davis et al. 1984 <- Corynebacterium michiganense subsp.
nebraskense (basonym) II296 | ATCC 27794 | CFBP 2405 | DSM 7483,
X77434, Clv.michgn | ICMP 3298 | LMG 3700 | LMG 5627, U09763,
Clv.michg9 | NCPPB 2581
Clavibacter michiganensis subsp. sepedonicus VP (Spieckermann and
Kotthoff 1914) Davis et al. 1984 <- Corynebacterium michiganense
subsp. sepedonicum (basonym) C-1 | ATCC 33113 | CFBP 2049 | DSM
20744 | ICMP 2535 | ICPB CS101 | LMG 2889, U09764, Clv.michg8
| NCPPB 2137
Clavibacter michiganensis subsp. tessellarius VP (Carlson and Vidaver

1982) Davis et al. 1984 <- Corynebacterium michiganense subsp.
tessellarius (basonym) 78181 | ATCC 33566, U30254, Clv.mich10
| ATCC 33566, U96181, Clv.mich13 | DSM 20741 | ICMP 7221 |
PDDCC 7221
43 4
Brevib act erium sape rd ae and Curtob acterium sape rd ae are o bje ctiv e s y nony ms and both are c ons id ered bas ony ms o f A ureob act erium
saperda e.
43 5
B re vibacterium testaceu m and Cu rt obacterium testaceu m are objec tiv e s yn ony ms and bo th are c ons id ered bas on ym s of A ureob act erium
testaceu m.
220
Clavibacter iranicum VP (Carlson and Vidaver 1982) Davis et al. 1984

<- Corynebacterium iranicum (basonym) -> Rathayibacter iranicus
66-807 | CFBP 807 | DSM 7484 | ICMP 3496 | LMG 3677 | NCPPB 2253
| VKM Ac-1602
Clavibacter rathayi VP (Smith 1913) Davis et al. 1984 <- Corynebac-

terium rathayi (basonym) -> Rathayibacter rathayi CE4 | CFBP 2406
| DSM 7485, X77439, Rtb.rathay | ICMP 2574 | JCM 9307, D45062,
Rtb.ratha2 | VKM Ac-1601

Clavibacter toxicus VP Riley and Ophel 1992 -> Rathayibacter toxicus
CS14 | ATCC 49908 | DSM 7488 | ICMP 9525, D84127, Rtb.toxicu |
JCM 9669, D84127, Rtb.toxicu | NCPPB 3552
Clavibacter tritici VP (Carlson and Vidaver 1982) Davis et al. 1984 <-
Corynebacterium tritici (basonym) -> Rathayibacter tritici CT102
| ATCC 11403 | DSM 7486, X77438, Rtb.tritic | ICMP 2626 | NCPPB
1857 | VKM Ac-1603

Clavibacter xyli subsp. xyli VP Davis et al. 1984 -> Leifsonia xyli subsp.
xyli L1A | ATCC 33974 | ICMP 7127 | LMG 7352 | NCPPB 3152 |
PDDCC 7127
Clavibacter xyli subsp. cynodontis VP Davis et al. 1984 -> Leifsonia xyli
subsp. cynodontis TB1A | ATCC 33973 | DSM 46306 | ICMP 8790
| IMET 11020 | JCM 1376 | JCM 9733, AB016985, Clv.xyli2 | NCIB
11927 | VKM Ac-2041

Genus VII. Cryobacterium VP
Cryobacterium psychrophilum VP (T) Suzuki et al. 1997 27-O-b | K. Inoue
and K | ATCC 43563 | DSM 4854 | IAM 12024 | NBRC 15735 | JCM
1463, D45058, Cry.psychp | NCIMB 2068
Genus VIII. Curtobacterium AL
Curtobacterium citreum AL (T) (Komagata and Iizuka 1964) Yamada and Ko-
magata 1972 = Brevibacterium citreum (homotypic synonym) 2Y-10
| ATCC 15828 | CCM 2297 | DSM 20528, X77436, Cub.citreu | IAM
1614 | IMET 10359 | NCIB 10702

Curtobacterium albidum AL (Komagata and Iizuka 1964) Yamada and Ko-
magata 1972 = Brevibacterium albidum (homotypic synonym) Y-3-2
| ATCC 15831 | CCM 2296 | DSM 20512 | IAM 1631 | NBRC 15078 ,
AB046363 | NCIB 11030

Curtobacterium ?accumfaciens VP (Hedges 1922) Collins and Jones
1984 <- Corynebacterium ?accumfaciens subsp. ?accumfaciens
(basonym) = Corynebacterium ?accumfaciens subsp. betae (junior
heterotypic synonym) = Corynebacterium ?accumfaciens subsp.
oortii (junior heterotypic synonym) = Corynebacterium ?accumfa-
ciens subsp. poinsettiae (junior heterotypic synonym) ATCC 6887 |
DSM 20129 | ICMP 2584 | LMG 3645, AJ312209 | NCPPB 1446
Curtobacterium herbarum VP Behrendt et al. 2002 P 420/07 | DSM 14013
| LMG 19917, AJ310413
Curtobacterium luteum AL (Komagata and Iizuka 1964) Yamada and Ko-

magata 1972 = Brevibacterium luteum (homotypic synonym) 2Y-12
| ATCC 15830 | CCM 2298 | DSM 20542, X77437, Cub.luteum | IAM
1623 | IMET 10360 | NCIB 11029

Curtobacterium plantarum VP Dunleavy 1989 CL63 | ATCC 49174 | DSM
7069
Curtobacterium pusillum AL (Iizuka and Komagata 1965) Yamada and Ko-
magata 1972 = Brevibacterium pusillum (homotypic synonym) 100 |
ATCC 19096 | DSM 20527 | IAM 1479 | IMET 11077 | NCIB 10354
Curtobacterium saperdae AL (Lysenko 1959) Yamada and Komagata
1972 = Brevibacterium saperdae (homotypic synonym) -> Aure-
221
obacterium saperdae 48-1-4 | ATCC 19272 | CCEB 366 | DSM 20169

| NBRC 15038, AB004719, Mbm.saperd | IMET 11076
Curtobacterium testaceum AL (Komagata and Iizuka 1964) Yamada and
Komagata 1972 = Brevibacterium testaceum (homotypic synonym)
-> Aureobacterium testaceum Rp-3 | ATCC 15829 | CCM 2299 | DSM
20166, X77445, Mbm.testac | IMET 10361
Genus IX. Frigoribacterium VP
Frigoribacterium faeni VP (T) Kmpfer et al. 2000 DSM 10309, Y18807 |
801
Genus X. Leifsonia VP
Leifsonia aquatica VP (T) (ex Leifson 1962) Evtushenko et al. 2000 DSM
20146, X77450 | JCM 1368 | VKM Ac-1400
Leifsonia aurea VP Reddy et al. 2003 CMS 81y, AJ438586 | CIP 107785 |
DSM 15303 | MTCC 4657
Leifsonia naganoensis VP Suzuki et al. 2000 DB 103 | JCM 10592
Leifsonia poae VP Evtushenko et al. 2000 VKM Ac-1401, AF116342
Leifsonia rubra VP Reddy et al. 2003 CMS 76r, AJ438585 | CIP 107783 |
DSM 15304 | MTCC 4210
Leifsonia shinshuensis VP Suzuki et al. 2000 DB 102 | JCM 10591
Leifsonia xyli subsp. xyli VP (Davis et al. 1984) Evtushenko et al. 2000
<- Clavibacter xyli subsp. xyli (basonym) L1A | ATCC 33974 | ICMP
7127 | LMG 7352 | NCPPB 3152 | PDDCC 7127
Leifsonia xyli subsp. cynodontis VP (Davis et al. 1984) Evtushenko et al.
2000 <- Clavibacter xyli subsp. cynodontis (basonym) TB1A | ATCC
33973 | DSM 46306 | ICMP 8790 | IMET 11020 | JCM 1376 | JCM 9733,
AB016985, Clv.xyli2 | NCIB 11927 | VKM Ac-2041
Genus XI. Leucobacter VP
Leucobacter komagatae VP (T) Takeuchi et al. 1996 DSM 8803 | IAM 1093
| NBRC 15245, D17751, Lbc.komaga | JCM 9414, D45063, Lbc.ko-
mag2
Genus XII. Mycetocola VP
Mycetocola saprophilus VP (T) Tsukamoto et al. 2001 CM-01, AB012647 |
NBRC 16274 | MAFF 211324 | NRRL B-24119
Mycetocola lacteus VP Tsukamoto et al. 2001 CM-10, AB012648 | NBRC
16278 | MAFF 211326 | NRRL B-24121
Mycetocola tolaasinivorans VP Tsukamoto et al. 2001 CM-05, AB012646
| NBRC 16277 | MAFF 211325 | NRRL B-24120
Genus XIII. Okibacterium VP

Okibacterium fritillariae VP (T) Evtushenko et al. 2002 NBRC 16404 | VKM
Ac-2059, AB042094
Genus XIV. Plantibacter VP
Plantibacter ?avus VP (T) Behrendt et al. 2002 DSM 14012, AJ310417 |
LMG 19919 | P 297/02
Genus XV. Rathayibacter VP
Rathayibacter rathayi VP (T) (Smith 1913) Zgurskaya et al. 1993 <- Clav-
ibacter rathayi (basonym) CE4 | CFBP 2406 | DSM 7485, X77439,
Rtb.rathay | ICMP 2574 | JCM 9307, D45062, Rtb.ratha2 | VKM
Ac-1601
Rathayibacter caricis VP Dorofeeva et al. 2002 UCM Ac-618 | VKM
Ac-1799, AF159364
Rathayibacter festucae VP Dorofeeva et al. 2002 UCM Ac-619 | VKM
Ac-1390, AF159365
Rathayibacter iranicus VP (Carlson and Vidaver 1982) Zgurskaya et al.
1993 <- Clavibacter iranicus (basonym) 66-807 | CFBP 807 | DSM
7484 | ICMP 3496 | LMG 3677 | NCPPB 2253 | VKM Ac-1602
222
Rathayibacter toxicus VP (Riley and Ophel 1992) Sasaki et al. 1998 <- Clav-
ibacter toxicus (basonym) CS14 | ATCC 49908 | DSM 7488 | ICMP
9525, D84127, Rtb.toxicu | JCM 9669, D84127, Rtb.toxicu | NCPPB
3552
Rathayibacter tritici VP (Carlson and Vidaver 1982) Zgurskaya et al. 1993
<- Clavibacter tritici (basonym) CT102 | ATCC 11403 | DSM 7486,
X77438, Rtb.tritic | ICMP 2626 | NCPPB 1857 | VKM Ac-1603
Genus XVI. Rhodoglobus VP
Rhodoglobus vestalii VP (T) Sheridan et al. 2003 LV3, AJ459101 | ATCC
BAA-534 | CIP 107482
Genus XVII. Salinibacterium VP
Salinibacterium amurskyense VP (T) Han et al. 2003 KCTC 9931 | KMM
3673 | AF539697
Genus XVIII. Subtercola VP
Subtercola boreus VP (T) Mannisto et al. 2000 CCUG 43135 | DSM 13056,
AF224722
Subtercola frigoramans VP Mannisto et al. 2000 CCUG 43136 | DSM
13057, AF224723
Subtercola pratensis VP Behrendt et al. 2002 -> Agreia pratensis P
229/10, AJ310412 | DSM 14246 | LMG 21000
Family XIII. "Beutenbergiaceae" 436
Genus I. Beutenbergia VP (T)
Beutenbergia cavernae VP (T) Groth et al. 1999 DSM 12333 | HKI 0122,
Y18378
Genus II. Georgenia VP
Georgenia muralis VP (T) Altenburger et al. 2002 1A-C, X94155 | CCM
4963 | DSM 14418
Genus III. Salana VP
Salana multivorans VP (T) von Wintzingerode et al. 2001 Se-3111,
AJ400627 | DSM 13521 | NRRL B-24118
Family XIV. Promicromonosporaceae VP
Genus I. Promicromonospora AL (T)
Promicromonospora citrea AL (T) Krassilnikov et al. 1961 ATCC 15908
| DSM 43110, Prm.entphl | DSM 43110, X83808, Prm.citrea | IMET
7267 | INMI 18 | JCM 3051 | KCC A-0051 | RIA 562

Promicromonospora enterophila VP Jager et al. 1983 DFA-19 | ATCC
35307 | DSM 43852, X83807, Prm.entphl | HMGB B1078 | NBRC
14650 | IMET 7687 | JCM 7350 | NRRL B-16223
Promicromonospora pachnodae VP Cazemier et al. 2004 VPCX2,
AF105422 | DSM 12657 | NCCB 100020
Promicromonospora sukumoe VP Takahashi et al. 1988 DSM 44121,
AJ272024 | NBRC 14650, AB023375, AB056130 | JCM 6845 |
SK-2049
Genus II. Cellulosimicrobium VP
Cellulosimicrobium cellulans VP (T) (Metcalf and Brown 1957) Schumann
et al. 2001 437 <- Cellulomonas cellulans (basonym) ATCC 12830 |
DSM 43189 | DSM 43879, X79455, X83809, Cllm.cllu2, Cllm.cllul |
IMET 7404 | NCIB 8868
Cellulosimicrobium variabile VP Bakalidou et al. 2002 MX5, AJ298873 |
Genus III. Xylanibacterium VP
43 6
B eute nbergia is thou ght to rep re sen t a se parate line of d esc en t within the A ctinob act eria. This howe ver, rem ain s to b e c on?rmed in
large-scale phylo gene tic stu die s.
43 7
223
Xylanibacterium ulmi VP (T) Rivas et al. 2004 XIL08, AY273185 | LMG

21721 | CECT 5731
Genus IV. Xylanimonas VP
Xylanimonas cellulosilytica VP (T) Rivas et al. 2003 XIL07, AF403541 |
CECT 5975 | LMG 20990
Suborder X. Corynebacterineae VP
Family I. Corynebacteriaceae AL
Genus I. Corynebacterium AL (T)
Corynebacterium diphtheriae AL (T) (Kruse 1886) Lehmann and Neumann
1896 C7S | ATCC 27010 | CIP 100721, X82059, Cor.dipht2 | DSM
44123 | NCTC 11397, X84248, Cor.diphth
Corynebacterium accolens VP Neubauer et al. 1991 ATCC 49725, X80500,
Cor.accoln | CCUG 28779, X80500, Cor.accoln | CNCTC Th1/57 | DSM
44278
Corynebacterium afermentans subsp. afermentans VP Riegel et al. 1993
CCUG 32103 | CIP 103499, X82054, Cor.afrme2 | DSM 44280 | LCDC
88199
Corynebacterium afermentans subsp. lipophilum VP Riegel et al. 1993
T18502 | ATCC 51404 | CCUG 32105 | CIP 103500, X82055,
Cor.afrme3 | DSM 44282

Corynebacterium ammoniagenes VP (Cooke and Keith 1927) Collins 1987
<- Brevibacterium ammoniagenes (basonym) AJ 1443 | ATCC 6871
| CIP 101283, X82056, Cor.ammoni | CIP 101283, X84440, Cor.am-
mon2 | DSM 20306 | IMET 11243 | NCIB 8143 | NCTC 2398

Corynebacterium amycolatum VP Collins et al. 1988 S160 | CIP 103452,
X82057, Cor.amycol | DSM 6922 | NCFB 2768, X84244, Cor.amyco2
Corynebacterium appendicis VP Yassin et al. 2002 DSM 44531 | IMMIB
R-3491, AJ314919 | NRRL B-24151
Corynebacterium aquilae VP Fernndez-Garayzbal et al. 2003 S-613 |
CCUG 46511 | CECT 5993, AJ496733
Corynebacterium argentoratense VP Riegel et al. 1995 IBS B10697 | CIP
104296, X83955, Cor.argent | DSM 44202
Corynebacterium atypicum VP Hall et al. 2003 R2070 | CCUG 45804,
AJ441057 | CIP 107431
Corynebacterium aurimucosum VP Yassin et al. 2002 438 DSM 44532,
AJ309207 | IMMIB D-1488
Corynebacterium auris VP Funke et al. 1995 CCUG 33426 | DMMZ 328,
X81873, Cor.auris2 | DMMZ 328, X82493, Cor.auris | DSM 44122
Corynebacterium auriscanis VP Collins et al. 2000 CCUG 39938 | DSM
43852, AJ243819
Corynebacterium betae AL Keyworth et al. 1956 -> Corynebacterium ?ac-
cumfaciens subsp. betae NCPPB 374
Corynebacterium beticola AL Abdou 1969 NCPPB 2256
Corynebacterium bovis AL Bergey et al. 1923 ATCC 7715, D38575,
Cor.bovis | DSM 20582 | IMET 10632 | NCTC 3224, D38575, Cor.bo-
vis | NCTC 3224, X84444, Cor.bovis3
Corynebacterium callunae AL (Lee and Good 1963) Yamada and Komagata
1972 ATCC 15991 | CCUG 28793, X82053, Cor.callu2 | DSM 20147
| IMET 11079 | NCIB 10338, X84251, Cor.callun | NRRL B-2244
Corynebacterium camporealensis VP Fernndez-Garayzbal et al. 1998

CRS-51, Y09569, Cor.campor | CECT 4897
Corynebacterium capitovis VP Collins et al. 2001 CCUG 39779, AJ297402
| CIP 106739
43 8
224
Corynebacterium casei VP Brennan et al. 2001 439 DPC 5298 | LMG

S-19264, AF267152
Corynebacterium confusum VP Funke et al. 1998 CCUG 38267 | DMMZ
2439, Y15886, Cor.confu1
Corynebacterium coyleae VP Funke et al. 1997 CCUG 35014 | DMMZ 214,
X96497, Cor.coylei | DSM 44184, X96497, Cor.coylei
Corynebacterium cystitidis AL Yanagawa and Honda 1978 42 | ATCC
29593, D37914, Cor.cysttd | CIP 103424, X82058, Cor.cystt3 | DSM
20524 | JCM 3715 | NCTC 11863, X84252, Cor.cystt2
Corynebacterium durum VP Riegel et al. 1997 IBS G15036, Z97069,
Cor.durum1 | CCUG 37331 | CIP 105490 | DSM 44351 | NBRC 16161
Corynebacterium ef?ciens VP Fundou et al. 2002 YS-314, AB055963 | JCM
11189 | DSM 44549
Corynebacterium equi AL Magnusson 1923 = Rhodococcus equi (homo-
typic synonym) ATCC 25729 | ATCC 6939, X80603, Rco.equi4 | CIP
1782.88 | DSM 20307 | NBRC 14956 | IMET 7467 | JCM 1311 | NCIB
12828 | NCTC 1621
Corynebacterium falsenii VP Sjdn et al. 1998 BL 8171 | CCUG 33651,
Y13024, Cor.falsen | DSM 44353
Corynebacterium fascians AL (Tilford 1936) Dowson 1942 -> Rhodococ-
cus fascians ATCC 12974, X81930, Rco.fasci3 | CIP 104713 | DSM
20669 | NBRC 12155 | JCM 1316 | NCPPB 3067
Corynebacterium felinum VP Collins et al. 2001 M714/95/5 | CCUG 39943,
AJ401282 | CIP 106740
Corynebacterium ?accumfaciens subsp. ?accumfaciens AL (Hedges 1922)
Dowson 1942 -> Curtobacterium ?accumfaciens ATCC 6887 | DSM
20129 | ICMP 2584 | LMG 3645, AJ312209 | NCPPB 1446 | NCTC 4758
Corynebacterium ?accumfaciens subsp. betae VP (Keyworth et al. 1956)
Carlson and Vidaver 1982 = Curtobacterium ?accumfaciens (senior
heterotypic synonym) <- Corynebacterium betae (basonym) NCPPB
374
Corynebacterium ?accumfaciens subsp. oortii VP (Saaltink and Maas
Geesteranus 1969) Carlson and Vidaver 1982 = Curtobacterium
?accumfaciens (senior heterotypic synonym) <- Corynebacterium
oortii (basonym) ATCC 25283
Corynebacterium ?accumfaciens subsp. poinsettiae VP (Starr and Pirone
1942) Carlson and Vidaver 1982 = Curtobacterium ?accumfaciens
(senior heterotypic synonym) <- Corynebacterium poinsettiae (ba-
sonym) ATCC 9682
Corynebacterium ?avescens AL Barksdale et al. 1979 OJ8 | ATCC 10340 |
CIP 69.5, X82060, Cor.?aves | DSM 20296 | IMET 11080 | JCM 1317 |
LMG 4046 | NCDO 1320, X84441, Cor.?ave2 | NCIB 8707
Corynebacterium freneyi VP Renaud et al. 2001 CIP 106767 | DSM 44506
| ISPB 6695110
Corynebacterium glaucum VP Yassin et al. 2003 IMMIB R-5091,

AJ431634 | DSM 44530 | NRRL B-24142
Corynebacterium glucuronolyticum VP Funke et al. 1995 6 | GF 838,
X86688, Cor.glucur | ATCC 51860 | DMMZ 838 | DSM 44120,
X86688, Cor.glucur
Corynebacterium glutamicum AL (Kinoshita et al. 1958) Abe et al. 1967
= Brevibacterium divaricatum (junior heterotypic synonym) =
Corynebacterium lilium (junior heterotypic synonym) ATCC 13032 |
DSM 20300, X80629, Cor.gluta2 | IAM 12435 | IMET 10482, X82061,
43 9
225
Cor.gluta4 | NCIB 10025, X84257, Cor.gluta3 | NCIB 10025, Z46753,

Cor.glutam
Corynebacterium hoagii AL (Morse 1912) Eberson 1918 ATCC 7005,
X82052, Cor.hoagii | DSM 20295 | IMET 11373 | NCTC 10673
Corynebacterium ilicis AL Mandel et al. 1961 -> Arthrobacter ilicis Cr-2
| ATCC 14264 | CFBP 1380 | DSM 20138, X83407, Arb.ilicis | ICMP
2607 | LMG 3659 | NCPPB 1228

Corynebacterium imitans VP Funke et al. 1997 CCUG 36877 | DMMZ
2023, Y09044 | DSM 44264 | NBRC 16163 | NCTC 13015
Corynebacterium insidiosum AL (McCulloch 1925) Jensen 1934 ->
Corynebacterium michiganense subsp. indiosum ATCC 10253
| CFBP 2404 | DSM 20157 | ICMP 2621 | LMG 3663, U09761,
Clv.michg7 | NCPPB 1109

Corynebacterium iranicum VP (ex Scharif) Carlson and Vidaver 1982 ->
Clavibacter iranicus 66-807 | CFBP 807 | DSM 7484 | ICMP 3496 |
LMG 3677 | NCPPB 2253 | VKM Ac-1602
Corynebacterium jeikeium VP Jackman et al. 1988 ATCC 43734, U87823,
Cor.jeike3 | CIP 103337, X82062, Cor.jeike2 | DSM 46361 | DSM 7171
| NBRC 15298 | IMET 11513 | NCTC 11913, X84250, Cor.jeikei
Corynebacterium kroppenstedtii VP Collins et al. 1998 CCUG 35717,

Y10077, Cor.krpnst
Corynebacterium kutscheri AL (Migula 1900) Bergey et al. 1925 ATCC
15677, D37802, Cor.kutsch | CIP 103423, X81871, Cor.kutsc2 | CIP
103423, X82063, Cor.kutsc3 | DSM 20755 | NCTC 11138
Corynebacterium lilium AL Lee and Good 1963 = Corynebacterium glu-
tamicum (senior heterotypic synonym) ATCC 15990 | DSM 20137 |
IMET 11081 | NCIB 10337 | NRRL B-2243
Corynebacterium lipophilo?avum VP Funke et al. 1997 CCUG 37336,
Y09045 | DMMZ 1944 | DSM 44291
Corynebacterium macginleyi VP Riegel et al. 1995 JCL-2, X80499,
Cor.macgin | ATCC 51787 | CCUG 32361 | CIP 104099, X80499,
Cor.macgin | DSM 44284
Corynebacterium mastitidis VP Fernandez-Garayzabal et al. 1997 S-8,
Y09806 | CCUG 38654 | CECT 4843 | DSM 44356
Corynebacterium matruchotii VP (Mendel 1919) Collins 1983 <- Bacteri-
onema matruchotii (basonym) 47 | ATCC 14266 | CIP 81.82, X82065,
Cor.matruc | DSM 20635, X84443, Cor.matru2 | IMET 11403 | NCTC
10254
Corynebacterium michiganense subsp. michiganense AL (Smith 1910)
Jensen 1934 -> Clavibacter michiganensis subsp. michiganensis
SO5 | CFBP 2352 | DSM 46364, X77435, Clv.michg2 | ICMP 2550
| ICPB CM 177 | IMET 11518 | LMG 7333, U09762, Clv.michg6 |

Corynebacterium michiganense subsp. insidiosum VP (McCulloch 1925)
Carlson and Vidaver 1982 <- Corynebacterium insidiosum (basonym)
-> Clavibacter michiganensis subsp. insidiosus ATCC 10253 | CFBP
2404 | DSM 20157 | ICMP 2621 | LMG 3663, U09761 | NCPPB 1109
Corynebacterium michiganense subsp. nebraskense VP (Vidaver and Man-
del 1974) Carlson and Vidaver 1982 <- Corynebacterium nebraskense
(basonym) -> Clavibacter michiganensis subsp. nebraskensis II296 |
CFBP 2405 | DSM 7483, X77434 | ICMP 3298 | LMG 3700 | LMG 5627,
U09763 | NCPPB 2581
Corynebacterium michiganense subsp. sepedonicum VP (Spieckermann
and Kotthoff 1914) Carlson and Vidaver 1982 <- Corynebacterium
sepedonicum (basonym) -> Clavibacter michiganensis subsp. sepe-
226
donicus C-1 | ATCC 33113 | CFBP 2049 | DSM 20744 | ICMP 2535 |
ICPB CS101 | LMG 2889, U09764 | NCPPB 2137
Corynebacterium michiganense subsp. tessellarius VP Carlson and
Vidaver 1982 -> Clavibacter michiganensis subsp. tessellarius
78181 | ATCC 33566, U30254, Clv.mich10 | ATCC 33566, U96181,
Clv.mich13 | DSM 20741 | ICMP 7221 | PDDCC 7221
Corynebacterium minutissimum VP Collins and Jones 1983 ATCC 23348 |
DSM 20651 | IMET 11144 | NCTC 10288, X82064, Cor.minsi3 | NCTC
10288, X84678, Cor.minsim | NCTC 10288, X84679, Cor.minsi2
Corynebacterium mooreparkense VP Brennan et al. 2001 440 DPC 5298 |
LMG S-19265, AF267148 | NCIMB 30131
Corynebacterium mucifaciens VP Funke et al. 1997 CCUG 36878 | CIP
105129 | CIP 55.51, X82066, Cor.mycet2 | DMMZ 2278, Y11200,
Cor.mucifa | DSM 44265
Corynebacterium mycetoides VP Collins 1983 ATCC 43995 | DSM 20632 |
NCTC 9864, X84241, Cor.mycetd
Corynebacterium nebraskense AL Vidaver and Mandel 1974 ->
Corynebacterium michiganense subsp. nebraskense II296 | ATCC
27794 | CFBP 2405 | DSM 7483, X77434, Clv.michgn | ICMP 3298 |
LMG 3700 | LMG 5627, U09763, Clv.michg9 | NCPPB 2581
Corynebacterium nigricans VP Shukla et al. 2004 CN-1, AF220220 | ATCC
700975 | CCUG 48176 | CIP 107346
Corynebacterium oortii AL Saaltink and Maas Geesteranus 1969 ->
Corynebacterium ?accumfaciens subsp. oortii ATCC 25283
Corynebacterium paurometabolum AL Steinhaus 1941 = Rhodococcus
aurantiacus (junior heterotypic synonym) -> Tsukamurella pau-
rometabola ATCC 8368 | DSM 20162, X53206, Tsu.pauro2 | NBRC
16083 | IMET 11082 | IMET 7373
Corynebacterium phocae VP Pascual et al. 1998 M408/89/1, Y10076 |
CCUG 38205
Corynebacterium pilosum AL Yanagawa and Honda 1978 46 | ATCC 29592,
D37915, Cor.pilosm | ATCC 29592, X81908, Cor.pilos3 | DSM 20521
| IMET 11382
Corynebacterium poinsettiae AL (Starr and Pirone 1942) Burkholder 1948

-> Corynebacterium ?accumfaciens subsp. poinsettiae ATCC 9682 |
IMET 10506
Corynebacterium propinquum VP Riegel et al. 1994 B 77159 | ATCC
51488 | CCUG 33048 | CIP 103792, X81917, Cor.propnq | CIP 103792,
X84438, Cor.propn2 | DSM 44285
Corynebacterium pseudodiphtheriticum AL Lehmann and Neumann 1896
153 | ATCC 10700 | ATCC 7091 | CCUG 27539 | CIP 103420, X81918,
Cor.psdpht | DSM 44287 | NBRC 15362 | NCTC 11136
Corynebacterium pseudotuberculosis AL (Buchanan 1911) Eberson 1918
ATCC 19410, D38579, Cor.pstub4 | CCUG 2806 | CIP 102968,
X81916, Cor.pstub5 | DSM 20689 | NCTC 3450, X84255, Cor.pstub6

Corynebacterium pyogenes AL (Glage 1903) Eberson 1918 -> Actino-
myces pyogenes 84 | C-100 | ATCC 19411, M29552, Abc.pyogen |
DSM 20630 | NCTC 5224, X79225, Abc.pyoge3
Corynebacterium rathayi AL (Smith 1913) Dowson 1942 -> Clavibacter
rathayi CE4 | CFBP 2406 | DSM 7485, X77439, Rtb.rathay | ICMP
2574 | JCM 9307, D45062, Rtb.ratha2 | VKM Ac-1601
44 0
227
Corynebacterium renale AL (Migula 1900) Ernst 1906 ATCC 19412,

M29553, Cor.renale | CIP 103421, X81909, Cor.renal7 | CIP 103421,
X84249, Cor.renal6 | DSM 20688 | IMET 11147 | NCTC 7448
Corynebacterium riegelii VP Funke et al. 1998 CCUG 38180 | CIP 105310
| DMMZ 2415 | DMMZ 2415, Y14651, Cor.riegel | DSM 44326
Corynebacterium seminale VP Riegel et al. 1996 IBS B12915 | CCUG

34780 | CCUG 34888 | CIP 104297, X84375, Cor.seminl | DSM 44288
Corynebacterium sepedonicum AL (Spieckermann and Kotthoff 1914)
Skaptason and Burkholder 1942 -> Corynebacterium michiganense
subsp. sepedonicum C-1 | ATCC 33113 | CFBP 2049 | DSM 20744 |
ICMP 2535 | ICPB CS101 | LMG 2889, U09764, Clv.michg8 | NCPPB
2137
Corynebacterium simulans VP Wattiau et al. 2000 Co 553 | UCL 553,
AJ012837 | DSM 44415
Corynebacterium singulare VP Riegel et al. 1997 IBS B52218, Y10999,
Cor.singul | CCUG 37330 | CIP 105491 | DSM 44357 | NBRC 16162
Corynebacterium sphenisci VP Goyache et al. 2003 CCUG 46398 | CECT
5990, AJ440964, AJ440964
Corynebacterium spheniscorum VP Goyache et al. 2003 PG39 | CCUG
45512, AJ429234 | CECT 5986
Corynebacterium striatum AL (Chester 1901) Eberson 1918 ATCC 6940
| CIP 81.15, X81910, Cor.striat | DSM 20668 | NCTC 764, X84442,
Cor.stria2
Corynebacterium sundsvallense VP Collins et al. 1999 CCUG 36622,
Y09655, Cor.sundsv
Corynebacterium suicordis VP Vela et al. 2003 P81/02 | CCUG 46963 |
CECT 5724, AJ504424
Corynebacterium terpenotabidum VP Takeuchi et al. 1999 Y-11 | NBRC
14764, AB004730
Corynebacterium testudinoris VP Collins et al. 2001 M935/96/4 | CCUG
41823, AJ295841 | CIP 106763
Corynebacterium thomssenii VP Zimmermann et al. 1998 Tho 218/95 |
DSM 44276, AF010474
Corynebacterium tritici VP (ex Hutchinson) Carlson and Vidaver 1982
-> Clavibacter tritici CT102 | ATCC 11403 | DSM 7486, X77438,
Rtb.tritic | ICMP 2626 | NCPPB 1857 | VKM Ac-1603
Corynebacterium ulcerans VP Riegel et al. 1995 ATCC 51799 | CCUG
2708, X81911, Cor.ulcern | DSM 46325 | IMET 11148 | NCTC 7910,
X84256, Cor.ulcer2
Corynebacterium urealyticum VP Pitcher et al. 1992 ATCC 43042,
X81913, Cor.urealy | DSM 7109, X84439, Cor.ureal2 | NCTC 12011
Corynebacterium variabile VP (Mller 1961) Collins 1987 <- Arthrobacter
variabilis (basonym) = Caseobacter polymorphus (junior heterotypic
synonym) FK 31 | ATCC 15753 | CCM 1565 | DSM 20132, AJ222815
| IMET 10350 | NCDO 2097, X53185, Cor.variab | NCIB 9455
Corynebacterium vitaeruminis VP (Bechdel et al. 1928) Lanelle et al. 1980

<- Brevibacterium vitarumen (basonym) ATCC 10234 | DSM 20294
| IMET 11372 | NCIB 9291
Corynebacterium xerosis AL Lehmann and Neumann 1899 ATCC 373,

X81914, Cor.xeros4 | DSM 20743, X84446, Cor.xeros5
Family II. Dietziaceae VP
Genus I. Dietzia VP (T)
Dietzia maris VP (T) (Nesterenko et al. 1982) Rainey et al. 1995 <-
Rhodococcus maris (basonym) AUCNM A-593 | ATCC 35013,
228
X81920, Dz.maris3 | CIP 104188 | DSM 43672, X79290, Dz.maris2 |

NBRC 15801 | IMET 7760 | IMV 195 | JCM 6166 | VKM Ac-593
Dietzia natronolimnaea VP Duckworth et al. 1999 15LN1, X92157 | CBS
107.95
Dietzia psychralcaliphila VP Yumoto et al. 2002 ILA-1, AB049630 | IAM
14896 | JCM 10987 | NCIMB 13777
Family III. Gordoniaceae VP
Genus I. Gordonia VP (T)
Gordonia bronchialis VP (T) (Tsukamura 1971) Stackebrandt et al. 1989 <-
Rhodococcus bronchialis (basonym) Tsukamura 3410 | ATCC 25592
| CIP 100847 | DSM 43247, X79287, Grd.bronc2 | IMET 7370 | JCM
3198 | KCC A-0198 | NCTC 10667, X75903, Grd.bronc3

Gordonia aichiensis VP (Tsukamura 1983) Klatte et al. 1994 <- Rhodococ-
cus aichiensis (basonym) 62001 | E 9028 | N934 | ATCC 33611,
X81925, Grd.aichi2 | DSM 43978, X80633, Grd.aichie | IMET 7752 |
JCM 6046
Gordonia alkanivorans VP Kummer et al. 1999 DSM 44369, Y18054 | HKI
0136
Gordonia amarae VP (Lechevalier and Lechevalier 1974) Klatte et al.
1994 <- Nocardia amarae (basonym) Se6 | ATCC 27808, X80601,
Grd.amara3 | CCM 2753 | CIP 104501 | DSM 43376 | DSM 43392,
X80635, Grd.amarae | DSM 43587 | IMET 7518 | IMRU 3960 | JCM
3171 | KCC A-0171 | NCIB 11222
Gordonia amicalis VP Kim et al. 2000 IEGM, AF101418 | DSM 44461 |
KCTC 9899
Gordonia desulfuricans VP Kim et al. 1999 213E, AF101416 | NCIMB
40816
Gordonia hirsuta VP Klatte et al. 1996 K718a | DSM 44140, X93485,
Grd.hyphob | DSM 44140, X93485, Grd.hirsut
Gordonia hydrophobica VP Bendinger et al. 1995 1610/1b | DSM 44015,
X87340 | CIP 104672 | NBRC 16057
Gordonia namibiensis VP Brandao et al. 2002 NAM-BN063A, AF380930
| DSM 44568 | NCIMB 13780
Gordonia nitida VP Yoon et al. 2000 LE31, AF148947 | KCTC 0605BP |

KCCM 80004
Gordonia polyisoprenivorans VP Linos et al. 1999 Kd2, Y18310 | DSM
44302
Gordonia rhizosphera VP Takeuchi and Hatano 1998 141, NBRC 16068,
AB004729 | NBRC 16068
Gordonia rubripertincta VP (Hefferan 1904) Stackebrandt et al. 1989
<- Rhodococcus rubropertinctus (basonym) 154 | ATCC 14352,
X81915, Grd.rubpe2 | DSM 43197, X80632, Grd.rubper | JCM 3204
| KCC A-0204 | NCIB 9664
Gordonia sputi VP (Tsukamura 1978) Stackebrandt et al. 1989 emend.

Riegel et al. 1994 <- Rhodococcus sputi (basonym) = Rhodococcus
chubuensis (junior heterotypic synonym) Nagura 8539 | ATCC
29627, X81923, Grd.sputi2 | CIP 100849 | DSM 43896, X80634,
Grd.sputi | IMET 7569 | JCM 3228 | KCC A-0228
Gordonia terrae VP (Tsukamura 1971) Stackebrandt et al. 1989 <-
Rhodococcus terrae (basonym) ATCC 25594, X81922, Grd.terra3 |
DSM 43249, X53202, Grd.terrae | DSM 43249, X79286, Grd.terra2
| IMET 7371 | NCTC 10669
Gordonia westfalica VP Linos et al. 2002 Kb2, AJ312907 | DSM 44215 |

NRRL B-24152
Genus II. Skermania VP
229
Skermania piniformis VP (T) (Blackall et al. 1989) Chun et al. 1997 <-
Nocardia pinensis (basonym) DSM 43998 | NBRC 15059, Z35435,
Sk.pinifrm | UQM 3063
Family IV. Mycobacteriaceae AL
Genus I. Mycobacterium AL (T)
Mycobacterium tuberculosis subsp. tuberculosis AL (T) (Zopf 1883)
Lehmann and Neumann 1896 H37Rv, X55588, Myb.tuber3 | ATCC
27294
Mycobacterium tuberculosis subsp. caprae VP Aranaz et al. 1999 -> My-
cobacterium bovis subsp. caprae gM-1, AJ131120 | CIP 105776
Mycobacterium abscessus VP (Moore and Frerichs 1953) Kusunoki and
Ezaki 1992 <- Mycobacterium chelonae subsp. abscessus (basonym)
ATCC 19977, X82235, Myb.absces | DSM 43491
Mycobacterium africanum AL Castets et al. 1969 ATCC 25420, AF480605

Mycobacterium agri VP Tsukamura 1981 6214 | 90012 | ATCC 27406 | CIP
1320001 | DSM 44515, AJ429045 | JCM 6377
Mycobacterium aichiense VP Tsukamura 1981 5545 | 49005 | ATCC 27280,
X55598, Myb.aichie | DSM 44147 | JCM 6376 | NCTC 10820
Mycobacterium alvei VP Ausina et al. 1992 CR-21 | CIP 103464,
AF023664, Myb.alvei1 | DSM 44176
Mycobacterium asiaticum AL Weiszfeiler et al. 1971 3056 | ATCC 25276,
X55604, Myb.asiat2 | CCUG 29115 | DSM 44297
Mycobacterium aurum AL Tsukamura 1966 358 | ATCC 23366, M29558,
Myb.aurum | ATCC 23366, X55595, Myb.aurum2 | DSM 43999 | JCM
6366 | NCTC 10437
Mycobacterium austroafricanum VP Tsukamura et al. 1983 E9789-
SA12441 | ATCC 33464, X93182, Myb.ausafr | DSM 44191 | JCM
6369
Mycobacterium avium subsp. avium AL Chester 1901 emend. Thorel et al.
1990 SSC 1336 | ATCC 25291 | CIP 104244 | DSM 44156, AJ536037
| TMC 724
Mycobacterium avium subsp. paratuberculosis VP (Bergey et al. 1923)

Thorel et al. 1990 <- Mycobacterium paratuberculosis (basonym)
5617 | ATCC 19698, X52934, Myb.aviumT | DSM 44133 | TMC 807
Mycobacterium avium subsp. silvaticum VP Thorel et al. 1990 6409 | CIP
103317 | DSM 44175
Mycobacterium bohemicum VP Reischl et al. 1998 2938-X86 | DSM 44277,
U84502
Mycobacterium botniense VP Torkko et al. 2000 E347, AJ012756 | ATCC
700701
Mycobacterium bovis subsp. bovis AL Karlson and Lessel 1970 ATCC
19210 441 | CIP 105234
Mycobacterium bovis subsp. caprae VP (Aranaz et al. 1999) Niemann et
al. 2002 442 <- Mycobacterium tuberculosis caprae (basonym) gM-1,
AJ131120 | CIP 105776
Mycobacterium branderi VP Koukila-Khkl et al. 1995 52157, X82234,
Myb.brandr | ATCC 51789
Mycobacterium brumae VP Luquin et al. 1993 CR-270 | ATCC 51384,
AF480576 | CIP 103465 | DSM 44177
Mycobacterium caprae VP (Aranaz et al. 1999) Aranaz et al. 2003 <- My-
cobacterium bovis subsp. caprae (basonym) gM-1 | ATCC BAA-824
| CIP 105776, L27512
44 1
44 2
230
Mycobacterium celatum VP Butler et al. 1993 ATCC 51131, L08169,

Myb.celatm | CDC 89-0899 | DSM 44243
Mycobacterium chelonae subsp. chelonae AL (Bergey et al. 1923) Kubica
et al. 1972 ATCC 35752, X82236, Myb.chelo6 | DSM 43804 | IMET
10609 | JCM 6388 | NCTC 946 | TMC 1544
Mycobacterium chelonae subsp. abscessus VP (Moore and Frerichs 1953)
Kubica et al. 1972 -> Mycobacterium abscessus ATCC 19977,
X82235, Myb.absces | DSM 43491
Mycobacterium chitae AL Tsukamura 1967 ATCC 19627, M29560,
Myb.chitae | ATCC 19627, X55603, Myb.chita2 | ATCC 19627,
X67874, Myb.chita3
Mycobacterium chlorophenolicum VP (Apajalahti et al. 1986) Hgg-
blom et al. 1994 <- Rhodococcus chlorophenolicus (basonym)
PCP-1, X79094, Myb.chlphe | ATCC 49826 | DSM 43826, X79292,
Myb.chlph2 | JCM 7439 | NCIMB 123325, X81926, Myb.chlph3 |
NRRL B-16528
Mycobacterium chubuense VP Tsukamura 1981 5517 | 48013 | OI-CHU |
ATCC 27278, X55596, Myb.chuben | DSM 44219 | JCM 6374 | NCTC
10819
Mycobacterium con?uentis VP Kirschner et al. 1992 1389/90, X63608 |
ATCC 49920 | DSM 44017
Mycobacterium conspicuum VP Springer et al. 1996 E100 | E27 | 3895/92,
X88922 | CIP 105165 | DSM 44136
Mycobacterium cookii VP Kazda et al. 1990 NZ2, X53896, Myb.cookii |
ATCC 49103, X53896, Myb.cookii | DSM 43922
Mycobacterium diernhoferi VP Tsukamura et al. 1983 41001 | ATCC 19340,
X55593, Myb.diernh | DSM 43524 | JCM 6371
Mycobacterium doricum VP Tortoli et al. 2001 FI-13295, AF264700 | CIP
106867 | DSM 44339
Mycobacterium duvalii AL Stanford and Gunthorpe 1971 C-63 | ATCC
43910, U94745, Myb.duvali | DSM 44244 | NCTC 358
Mycobacterium elephantis VP Shojaei et al. 2000 484, AJ010747 | DSM
44368
Mycobacterium fallax VP Levy-Frebault et al. 1983 ATCC 35219,
M29562, Myb.fallax | CIP 8139 | DSM 44179
Mycobacterium farcinogenes AL Chamoiseau 1973 GA 923 | M 262 | N168
| ATCC 35753, AF055333, Myb.farci2 | CCM 6181 | DSM 43637 |
NCTC 10955
Mycobacterium ?avescens AL Bojalil et al. 1962 SN 1900 | ATCC 14474,
M29561, Myb.?aves | ATCC 14474, X52932, Myb.?ave2 | DSM 43219
Mycobacterium fortuitum subsp. fortuitum AL da Costa Cruz 1938 ATCC
6841, X52933, Myb.fortui | DSM 46621 | IMET 10605 | NCTC 10394 |
TMC 1529
Mycobacterium fortuitum subsp. acetamidolyticum VP Tsukamura et al.
1986 ATCC 35931 | DSM 44220 | JCM 6368 | NCH E11620
Mycobacterium frederiksbergense VP Willumsen et al. 2001 FAn9 | DSM
44346, AJ276274 | NRRL B-24126
Mycobacterium gadium AL Casal and Calero 1974 ATCC 27726, M61663,
Myb.gadium | ATCC 27726, X55594, Myb.gadiu2 | DSM 44077
Mycobacterium gastri AL Wayne 1966 W-417 | ATCC 15754, X52919,
Myb.gastri | ATCC 15980 | DSM 43505 | IMET 10662 | TMC 1456
Mycobacterium genavense VP Bttger et al. 1993 2289, X60070 | ATCC
51234
231
Mycobacterium gilvum AL Stanford and Gunthorpe 1971 SM 35 | ATCC

43909, X55599, Myb.gilvum | ATCC 43909, X81996, Myb.gilvu2 |
DSM 44245 | JCM 6395 | NCTC 10742
Mycobacterium goodii VP Brown et al. 1999 MO69, Y12872 | ATCC
700504
Mycobacterium gordonae VP Bojalil et al. 1962 P-15 | W-1609 | ATCC
14470, M29563, Myb.gordon | ATCC 14470, X52923, Myb.gordo2 |
DSM 44160 | JCM 6382 | NCTC 10267 | TMC 1324
Mycobacterium haemophilum AL Sompolinsky et al. 1978 ATCC 29548 |
CIP 105049
Mycobacterium hassiacum VP Schrder et al. 1997 3849, U49401 | DSM
44199
Mycobacterium heckeshornense VP Roth et al. 2001 443 S369, AF174290 |
DSM 44428
Mycobacterium heidelbergense VP Haas et al. 1998 2554/91, AJ000684,
Myb.hdlbrg | ATCC 51253
Mycobacterium hiberniae VP Kazda et al. 1993 Hi 11 | IR 103 | ATCC
49874, X67096, Myb.hibern | DSM 44241
Mycobacterium hodleri VP Kleespies et al. 1996 EMI2 | CIP 104909 | DSM
44183, X93184, Myb.hodler
Mycobacterium holsaticum VP Richter et al. 2002 1406, AJ310467 | CCUG
46267 | DSM 44478
Mycobacterium immunogenum VP Wilson et al. 2001 BH29 | MC 779 |
ATCC 700505 444 | CIP 106684
Mycobacterium interjectum VP Springer et al. 1995 4185/92 | ATCC 51457
| DSM 44064
Mycobacterium intermedium VP Meier et al. 1993 1669/91 | ATCC 51848 |

CIP 104542 | DSM 44049
Mycobacterium intracellulare AL (Cuttino and McCabe 1949) Runyon 1965
3600 | SN 424 | ATCC 13950 | ATCC 15985, X52927, Myb.intcel |
DSM 43223 | JCM 6384 | NCTC 10682

Mycobacterium kansasii AL Hauduroy 1955 G 133 | ATCC 12478, M29575,
Myb.kansas | DSM 44162 | JCM 6379 | TMC 1204
Mycobacterium komossense AL Kazda and Mller 1979 Ko 2 | ATCC 33013,
X55591, Myb.komoss | DSM 44078
Mycobacterium kubicae VP Floyd et al. 2000 ATCC 700732 | CDC 941078,
AF133902 | CIP 106428
Mycobacterium lacus VP Turenne et al. 2002 ATCC BAA-323 | DSM 44577
| NRCM 00-225, AF406783
Mycobacterium lenti?avum VP Springer et al. 1996 2186/92, X80769,

Myb.len?a | ATCC 51985 | DSM 44195
Mycobacterium leprae AL (Hansen 1880) Lehmann and Neumann 1896 ,
X53999, Myb.leprae, X55022, Myb.lepra2, X55587, Myb.lepra3
Mycobacterium lepraemurium AL Marchoux and Sorel 1912
Mycobacterium madagascariense VP Kazda et al. 1992 P2 | ATCC 4986
Mycobacterium mageritense VP Domenech et al. 1997 938 | CIP 104973
Mycobacterium malmoense AL Schrder and Juhlin 1977 Mo 816 | ATCC
29571, M61666, Myb.malmo1 | ATCC 29571, X52930, Myb.malmo2
| DSM 44163 | TMC 802
Mycobacterium marinum AL Aronson 1926 ATCC 927, AF456240 | DSM

44344, AJ536032 | NCTC 2275
44 3
44 4
Ge nBa nk acce ssio n n umb er for ATCC 700 505 reporte d a s bank it3787 24.
232
Mycobacterium microti AL Reed 1957 ATCC 19422, AF480584 | DSM

44155 | NCTC 8710
Mycobacterium monte?orense VP Levi et al. 2003 ATCC BAA-256 | DSM
44602, AF330038 445
Mycobacterium moriokaense VP Tsukamura et al. 1986 48504 | ATCC
43059 | DSM 44221, AJ429044 | JCM 6375 | NCH E11715
Mycobacterium mucogenicum VP Springer et al. 1995 ATCC 49650,
X80771, Myb.mucogn
Mycobacterium murale VP Vuorio et al. 1999 MA112/96 | DSM 44340
Mycobacterium neoaurum AL Tsukamura 1972 3503 | ATCC 25795,
M29564, Myb.neoaur | DSM 44074 | JCM 6365 | NCTC 10818
Mycobacterium nonchromogenicum AL Tsukamura 1965 317 | ATCC
19530, M29565, Myb.nonchr | ATCC 19530, X52928, Myb.nonch2 |
ATCC 23067 | DSM 44164 | JCM 6364 | NCTC 10424 | TMC 1481
Mycobacterium novocastrense VP Shojaei et al. 1997 73, U96747,
Myb.novcas | DSM 44203
Mycobacterium obuense VP (Tsukamura and Mizuno 1971) Tsukamura and
Mizuno 1981 4388 | 47001 | ATCC 27023, X55597, Myb.obuens |
DSM 44075 | JCM 6372 | NCTC 10778
Mycobacterium palustre VP Torkko et al. 2002 E846, AJ308603 | ATCC
BAA-377 | DSM 44572
Mycobacterium parafortuitum AL Tsukamura et al. 1965 311 | SN 1603 |
ATCC 19686 | DSM 43528, X93183, Myb.pfortu | JCM 6387 | NCTC
10411
Mycobacterium paratuberculosis AL Bergey et al. 1923 -> Mycobacterium
avium subsp. paratuberculosis ATCC 19698, X52934, Myb.aviumT
| DSM 44133
Mycobacterium peregrinum VP Kusunoki and Ezaki 1992 Schering 206 |

ATCC 14467, Myb.peregr | DSM 43271 | IMET 10608 | NCTC 10264,
AF058712, Myb.peregr
Mycobacterium phlei AL Lehmann and Neumann 1899 ATCC 11758,
M29566, Myb.phlei | ATCC 19249 | DSM 43239 | NCTC 8151
Mycobacterium porcinum VP Tsukamura et al. 1983 E10241-1 | ATCC
33776 | DSM 44242 | JCM 6378
Mycobacterium poriferae VP Padgitt and Moshier 1987 47 | ATCC 35087,
AF480589
Mycobacterium pulveris VP Tsukamura et al. 1983 ATCC 35154 | CIP
1480001 | DSM 44222, AJ429046 | JCM 6370 | NCH 33505
Mycobacterium rhodesiae VP Tsukamura 1981 2002 | OI-RHO | JCM 6363
| ATCC 27024 | DSM 44223, AJ429047 | NCTC 10779
Mycobacterium scrofulaceum AL Prissick and Masson 1956 12238 | ATCC

19981, X52924, AF480604, X52924, Myb.scrofu | DSM 43992,
AJ536034 | JCM 6381 | NCTC 10803 | TMC 1323
Mycobacterium senegalense AL (Chamoiseau 1973) Chamoiseau 1979 GA
924 | M 263 | N169 | ATCC 35796, M29567, Myb.senega | DSM 43656 |
IMET 7381 | NCTC 10956 | TMC 806
Mycobacterium septicum VP Schinsky et al. 2000 W4964, AF111809 |
ATCC 700731 | DSM 44393
Mycobacterium shimoidei VP Tsukamura 1982 E4796 | N 29 | ATCC 27962,
X82459, Myb.shimo2 | DSM 44152
Mycobacterium shottsii VP Rhodes et al. 2003 M175, AY005147 | ATCC
700981 | NCTC 13215
Mycobacterium simiae AL Karassova et al. 1965 3015 | ATCC 25275,
X52931, Myb.simiae | CIP 104531 | DSM 44165 | TMC 1226
44 5
Se quen ce conta in ITS .
233
Mycobacterium smegmatis AL (Trevisan 1889) Lehmann and Neumann

1899 GA 735 | ATCC 19420, AJ131761, Myb.smegm2 | DSM 43756
| JCM 5866 | KCTC 9108 | NCTC 8159
Mycobacterium sphagni VP Kazda 1980 Sph 38 | ATCC 33027 | DSM 44076

Mycobacterium szulgai AL Marks et al. 1972 25932 | ATCC 35799,
M61665, Myb.szulg2 | ATCC 35799, X52926, Myb.szulga | DSM
44166 | JCM 6383 | NCTC 10831 | PCM 1876 | TMC 1328
Mycobacterium terrae AL Wayne 1966 F 628 | SN 2700 | W45 | ATCC 15755,
M29568, Myb.terra1 | ATCC 15755, X52925, Myb.terra2 | DSM 43227
Mycobacterium thermoresistibile AL Tsukamura 1966 316 | ATCC 19527,
M29570, Myb.thermo | DSM 44167 | JCM 6392 | NCTC 10409
Mycobacterium tokaiense VP Tsukamura 1981 5553 | 47503 | ATCC 27282,
AF480590 | NCTC 10821
Mycobacterium triplex VP Floyd et al. 1997 90-1019 | ATCC 700071
Mycobacterium triviale AL Kubica 1970 T-255-3 | ATCC 23292, M29571,
Myb.trivia | ATCC 23292, X88924, Myb.trivi2 | DSM 44153 | TMC
1453
Mycobacterium tusciae VP Tortoli et al. 1999 FI-25796, AF058299 | DSM
44338
Mycobacterium ulcerans AL MacCallum et al. 1950 ATCC 19423 | DSM
44154
Mycobacterium vaccae AL Bnicke and Juhasz 1964 SN 920 | ATCC 15483,
X55601, Myb.vaccae | DSM 43292 | NCIB 9937
Mycobacterium vanbaalenii VP Khan et al. 2002 PYR-1, X84977 | DSM
7251 | NRRL B-24157
Mycobacterium wolinskyi VP Brown et al. 1999 MO739, Y12873 | ATCC
700010
Mycobacterium xenopi AL Schwabacher 1959 ATCC 19250, M61664,
Myb.xenop1 | ATCC 19250, X52929, Myb.xenop3 | ATCC 19250,
X53895, Myb.xenop2 | DSM 43995 | NCTC 10042 | TMC 1482
Family V. Nocardiaceae AL
Genus I. Nocardia AL (T)
Nocardia asteroides AL (T) (Eppinger 1891) Blanchard 1896 GA 875 | M
170-6 | PSA 165 | ATCC 19247, X84850, Noc.aster6 | ATCC 19247,
Z36934, Noc.aster2 | CCM 2754 | DSM 43373 | DSM 43757, X80606,
Noc.aster4 | IMET 7547 | JCM 3384 | NCTC 11293
Nocardia abscessus VP Yassin et al. 2000 IMMIB D-1592, AF218292 |
DSM 44432
Nocardia africana VP Hamid et al. 2001 SD769, AF277198 | DSM 44491 |
NCTC 13181
Nocardia amarae AL Lechevalier and Lechevalier 1974 -> Gordonia ama-
rae Se6 | ATCC 27808, X80601, Grd.amara3 | CCM 2753 | CIP 104501
| DSM 43376 | DSM 43392, X80635, Grd.amarae | DSM 43587 | IMET
7518 | IMRU 3960 | JCM 3171 | KCC A-0171 | NCIB 11222

Nocardia asiatica VP Kageyama et al. 2004 DSM 44668 | IFM 0245,
AB092566 | JCM 11892 | NBRC 100129
Nocardia autotrophica AL (Takamiya and Tubaki 1956) Hirsch 1961 ->
Amycolata autotrophica 394 | ATCC 19727 | CBS 466.68 | DSM 40011
| DSM 43210, X54288, Psc.autotr | DSM 535 | NBRC 12743 | IMET
7646 | ISP 5011 | KCC S-0348 | RIA 1008

Nocardia beijingensis VP Wang et al. 2001 02 | AS4.1521, AF154129 |
NBRC 16342 | JCM 10666
Nocardia brasiliensis AL (Lindenberg 1909) Pinoy 1913 GA 876 | ATCC
19296, X80591, Noc.brasi2 | ATCC 19296, Z36935, Noc.brasil | CBS
234
330.54 | DSM 43758, X80608, Noc.brasi3 | NBRC 14402 | JCM 3374 |

NCTC 11294
Nocardia brevicatena VP (Lechevalier et al. 1961) Goodfellow and Pirouz
1982 <- Micropolyspora brevicatena (basonym) ATCC 15333,
X80600, Noc.brevi2 | DSM 43024, Z36928, Noc.brevic | NBRC 12119
| IMET 9542 | IMRU 1086W | KCC A-0029 | RIA 709
Nocardia caishijiensis VP Zhang et al. 2003 F829, AF459443 | AS 4.1728 |

JCM 11508
Nocardia calcarea AL Metcalf and Brown 1957 = Rhodococcus erythro-
polis (senior heterotypic synonym) ATCC 19369 | CBS 613.67 | CCM
2597 | DSM 43188, X80618, Rco.eryth4 | NCIB 8863
Nocardia carnea AL (Rossi Doria 1891) Castellani and Chalmers 1913
ATCC 6847, X80602, Noc.carne2 | DSM 43397, X80607, Noc.carne3
| DSM 43397, Z36929, Noc.carnea | DSM 43580 | IMET 7504 | IMRU
3419 | NCTC 3527

Nocardia cellulans AL Metcalf and Brown 1957 -> Cellulomonas cellulans
ATCC 12830 | DSM 43189 | DSM 43879, X79455, Cllm.cllu2 | DSM
43879, X83809, Cllm.cllul | IMET 7404 | NCIB 8868

Nocardia cerradoensis VP Albuquerque de Barros et al. 2003 VC5,
AF060790 | CCT 5601 | DSM 44546 | Y9
Nocardia coeliaca AL (Gray and Thornton 1928) Waksman and Henrici
1948 ATCC 17041
Nocardia corynebacterioides AL Serrano et al. 1972 ATCC 14898 | DSM
20151, X80615, Noc.corbac | IMET 7767 | NCIB 9433 | NCTC 10391 |
NRRL B-24037
Nocardia crassostreae VP Friedman et al. 1998 NB4H, Z37989,
Noc.crasso | ATCC 700418
Nocardia cummidelens VP Maldonado et al. 2001 R89, AF277202 446 | DSM
44490 | NCIMB 13758
Nocardia cyriacigeorgica VP Yassin et al. 2001 447 DSM 44484 | IMMIB
D-1627, AF282889
Nocardia farcinica AL Trevisan 1889 GA 919 | M 258 | N 164 | ATCC 3318,
X80595, Noc.farci2 | ATCC 3318, Z36936, Noc.farcin | DSM 43257 |
DSM 43578 | DSM 43665, X80610, Noc.farci5 | IMET 7377 | IMRU
3318 | NCIB 12058 | NCTC 11134
Nocardia ?avorosea VP Chun et al. 1998 JCM 3332, Z46754 | NRRL
B-16176
Nocardia ?uminea VP Maldonado et al. 2001 S1, AF277204 448 | DSM 44489
| NCIMB 13759
Nocardia globerula AL (Gray 1928) Waksman and Henrici 1948 ATCC

19370
Nocardia hydrocarbonoxydans AL Nolof and Hirsch 1962 -> Amycolata
hydrocarbonoxydans Schering 228 | ATCC 15104 | DSM 43281,
X76955, Psc.hcarbo | IMET 7645 | NCIB 9436
Nocardia ignorata VP Yassin et al. 2001 DSM 44496 | IMMIB R-1434,
AJ303008 | NRRL B-24141
Nocardia inohanensis VP Kaneyama et al. 2004 IFM 0092, AB092560 |
DSM 4467 | JCM 11891 | NBRC 100128
Nocardia mediterranei AL (Margalith and Beretta 1960) Thiemann et
al. 1969 -> Amycolatopsis mediterranei 368 | ME 83/973 | PSA 71
| Schering 368 | ATCC 13685, X76957, Amy.medter | CBS 121.63 |
44 6
44 7
44 8
235
CBS 716.72 | DSM 40501 | DSM 43304 | NBRC 13415 | IMET 7651 |
ISP 5501 | JCM 4789 | KCC S-0789 | LBG A 3136 | NCIB 9613 | NRRL
B-3240 | RIA 1376 | VKM Ac-798
Nocardia neocaledoniensis VP Saintpierre-Bonaccio et al. 2004 SBHR
OA6, AY282603 | DSM 44717 | NCIMB 13955
Nocardia niigatensis VP Kaneyama et al. 2004 IFM 0330, AB092563 |
DSM 4470 | JCM 11894 | NBRC 100131
Nocardia nova VP Tsukamura 1983 R.E. Gordon R443 | Tsukamura 23095
| ATCC 33726, X80593, Noc.nova2 | JCM 6044, Z36930, Noc.nova
Nocardia orientalis AL (Pittenger and Brigham 1956) Pridham and Lyons

1969 -> Amycolatopsis orientalis subsp. orientalis M 43-05865
| ATCC 19795 | CBS 547.68 | CCM 2778 | DSM 40040, X76958,
Amy.orient | IAM 14281 | NBRC 12360 | NBRC 12806 | IMET 7510

| IMET 7653 | ISP 5040 | JCM 4235 | JCM 4600 | KCC S-0235 | KCC
S-0600 | NRRL 2450 | RIA 1074

Nocardia otitidiscaviarum AL Snijders 1924 ATCC 14629, X80599,
Noc.otiti2 | DSM 43242, X80611, Noc.otiti3 | NCTC 1934
Nocardia paucivorans VP Yassin et al. 2000 DSM 44386, AF179865 | IM-
MIB D-1632
Nocardia petroleophila AL Hirsch and Engel 1956 -> Pseudonocardia
petroleophila 78 | ATCC 15777, X80596, Psc.petrol | DSM 43193 |
DSM 655 | NBRC 14406 | IMET 7162 | JCM 3378 | JCM 3394 | NCIB
9438
Nocardia pinensis VP Blackall et al. 1989 -> Skermania piniformis DSM
43998 | NBRC 15059, Z35435, Sk.pinifrm | UQM 3063
Nocardia pseudobrasiliensis VP Ruimy et al. 1996 ATCC 51512, X84857,
Noc.psbra2 | CCUG 35436 | CIP 104600 | DSM 44290
Nocardia pseudovaccinii VP Kim et al. 2002 AR 368 | 38366-20 | DSM
43406, AF430046 | NRRL B-24154
Nocardia restricta AL (Tur?tt 1944) McClung 1974 = Rhodococcus equi
(senior heterotypic synonym) ATCC 14887 | ATCC 25716 | DSM
43199 | IMET 7279 | KCC A-0223 | NCIB 10027
Nocardia rugosa VP Goodfellow and Lechevalier 1988 = Amycolatopsis ru-
gosa (homotypic synonym) ATCC 43014 | IMET 7650 | IMRU 3760
Nocardia salmonicida VP Isik et al. 1999 ATCC 27463 | CBS 694.72 |
NBRC 13393 | ISP 5472 | JCM 4826, D44392, Noc.salmon | JCM 4826,
Z46750, Noc.salmo2 | JCM 4826 | NRRL B-2778
Nocardia saturnea AL Hirsch 1960 -> Amycolata saturnea 71 | ATCC
15809 | DSM 43195, X76956, Psc.saturn | IMET 7647 | NCIB 9437
Nocardia seriolae VP Kudo et al. 1988 NA 8191 | ATCC 43933, X80592,
Noc.serio2 | DSM 44129 | JCM 3360, Z36925, Noc.seriol
Nocardia soli VP Maldonado et al. 2001 W30, AF277223 449 | DSM 44488 |
NCIMB 13760
Nocardia sulphurea VP Goodfellow and Lechevalier 1988 = Amycolatop-
sis sulphurea (homotypic synonym) ATCC 27624 | DSM 46092,
AF051343 | IMET 7649
Nocardia tenerifensis VP Kmpfer et al. 2004 GW39-1573, AJ556157 | CIP
107929 | DSM 44704
Nocardia transvalensis AL Pijper and Pullinger 1927 ATCC 6865, X80598,
Noc.trnsv2 | DSM 43405, X80609, Noc.trnsv3 | DSM 43405, Z36926,
Noc.trnsvl | DSM 43582 | NBRC 15921 | IMET 7500 | IMRU 3426 |
NCTC 2392
Nocardia uniformis VP Isik et al. 1999 JCM 3224, Z46752 | CBS 224.60 |
DSM 43136 | NBRC 13702 | NCIB 963
44 9
236
Nocardia vaccinii AL Demaree and Smith 1952 BG 19 | Schering 245

| ATCC 11092, X80597, Noc.vaccn2 | CBS 247.55 | DSM 43285,
Z36927, Noc.vaccni | ICMP 5814 | NBRC 15922 | IMET 7503 | IMRU

3500 | NCPPB 954
Nocardia veterana VP Grtler et al. 2001 M157222 | DSM 44445,
AF278572, AF430055, AY171039, AY191253 | NRRL B-24136
Nocardia vinacea VP Kinoshita et al. 2002 450 MK703-102F1, AB024312 |
NBRC 16497 | JCM 10988
Nocardia yamanashiensis VP Kaneyama et al. 2004 IFM 0265, AB092561
| DSM 4469 | JCM 11893 | NBRC 100130
Genus II. Rhodococcus AL

Rhodococcus rhodochrous AL (T) (Zopf 1891) Tsukamura 1974 emend.
Rainey et al. 1995 = Rhodococcus roseus (junior heterotypic syn-
onym) 372 | ATCC 13808 | CIP 104376 | DSM 43241, X79288,
Rco.rhodo2 | IMET 7374 | KCC A-0202 | LMG 5365 | NCIB 11147 |
NCTC 10210
Rhodococcus aichiensis VP Tsukamura 1983 -> Gordonia aichiensis
62001 | E 9028 | N934 | ATCC 33611, X81925, Grd.aichi2 | DSM
43978, X80633, Grd.aichie | IMET 7752 | JCM 6046

Rhodococcus aurantiacus VP (ex Tsukamura and Mizuno 1971) Tsuka-
mura and Yano 1985 = Corynebacterium paurometabolum (senior
heterotypic synonym) ATCC 25938 | IMET 7373
Rhodococcus bronchialis AL (Tsukamura 1971) Tsukamura 1974 -> Gor-
donia bronchialis Tsukamura 3410 | ATCC 25592 | CIP 100847 | DSM
43247, X79287, Grd.bronc2 | IMET 7370 | JCM 3198 | KCC A-0198 |
NCTC 10667, X75903, Grd.bronc3
Rhodococcus chlorophenolicus VP Apajalahti et al. 1986 -> Mycobac-
terium chlorophenolicum PCP-1, X79094, Myb.chlphe | ATCC
49826 | DSM 43826, X79292, Myb.chlph2 | JCM 7439 | NCIMB
123325, X81926, Myb.chlph3 | NRRL B-16528
Rhodococcus chubuensis VP Tsukamura 1983 = Gordonia sputi (senior
heterotypic synonym) E 6324 | ATCC 33609 | DSM 44019, X80627,
Grd.sputi5
Rhodococcus coprophilus AL Rowbotham and Cross 1979 N 744 | ATCC
29080, X81928, Rco.coprp2 | CCUG 23572 | CUB 687 | DSM 43347,
X80626, Rco.coprph | IMET 7375 | JCM 3200, U93340, Rco.coprp3 |
NCIB 11211 | NCTC 10994
Rhodococcus corallinus AL (Bergey et al. 1923) Goodfellow and Alderson
1977 = Rhodococcus rubropertinctus (senior heterotypic synonym)
ATCC 25593 | CIP 100848 | DSM 43248 | IMET 7372 | NCTC 10668
Rhodococcus equi AL (Magnusson 1923) Goodfellow and Alderson 1977
= Corynebacterium equi (homotypic synonym) = Nocardia restricta
(junior heterotypic synonym) ATCC 25729 | ATCC 6939 | CIP
1782.88, X80603, Rco.equi4 | DSM 20307, X80603, Rco.equi4 | DSM
20307, X80614, Rco.equi2 | NBRC 14956 | IMET 7467 | JCM 1311 |
NCIB 12828 | NCTC 1621
Rhodococcus erythropolis AL (Gray and Thornton 1928) Goodfellow and
Alderson 1979 = Arthrobacter picolinophilus (junior heterotypic syn-
onym) = Nocardia calcarea (junior heterotypic synonym) ATCC
25544 | ATCC 4277, X81929, Rco.eryth5 | CBS 266.39 | CCM 277 | CIP
104179 | DSM 43066, X79289, Rco.erthrs | DSM 763 | NBRC 15567
| IMET 7462 | JCM 3201 | NCIB 11148, X76691, Rco.eryth3 | NCIB
9158 | NRRL B-16025

45 0
237
Rhodococcus fascians VP (Tilford 1936) Goodfellow 1984 <- Corynebac-

terium fascians (basonym) = Rhodococcus luteus (junior heterotypic
synonym) ATCC 12974, X81930, Rco.fasci3 | CIP 104713 | DSM
20669, X79186, Rco.fasci2 | NBRC 12155 | JCM 1316 | NCPPB 3067
Rhodococcus globerulus VP Goodfellow et al. 1985 544 | R58 | ATCC 25714
| DSM 43954 | DSM 43954, X80619, Rco.globe4 | IMET 7543 | NCIMB
12315, U89713, Rco.globe5 | NCIMB 12315, X77779, Rco.glober |

NCIMB 12315, X81931, Rco.globe3
Rhodococcus gordoniae VP Jones et al. 2004 W 4937, AY233201 | DSM
44689 | NCTC 13296
Rhodococcus jostii VP Takeuchi et al. 2002 CCM 4760 | NBRC 16295,
AB046357
Rhodococcus koreensis VP Rhodococcus koreensis Yoon et al. 2000
DNP505, AF124343 | DNP505, AF124342 | KCTC 0569BP
Rhodococcus luteus VP Nesterenko et al. 1982 = Rhodococcus fascians
(senior heterotypic synonym) AUCNM A-594 | ATCC 35014,
X81932, Rco.fasci4 | DSM 43673, X79187, Rco.fasci5 | IMET 7761 |
IMV 385 | JCM 6162 | VKM Ac-594
Rhodococcus maanshanensis VP Zhang et al. 2002 M712, AF416566 | AS
4.1720 | JCM 11374
Rhodococcus marinonascens VP Helmke and Weyland 1984 3438 W |
ATCC 35653 | DSM 43752, X80617, Rco.marna2 | NBRC 14363 | JCM
6241 | NCMB 2246
Rhodococcus maris VP Nesterenko et al. 1982 -> Dietzia maris AUCNM
A-593 | ATCC 35013, X81920, Dz.maris3 | CIP 104188 | DSM 43672,
X79290, Dz.maris2 | NBRC 15801 | IMET 7760 | IMV 195 | JCM 6166
| VKM Ac-593
Rhodococcus obuensis VP Tsukamura 1983 E 8179 | ATCC 33610 | IMET

7753
Rhodococcus opacus VP Klatte et al. 1995 1B | ATCC 51881 | CIP 104549 |
DSM 427 | DSM 43205, X80630, Rco.opacus
Rhodococcus percolatus VP Briglia et al. 1996 MBS1, X92114, Rco.percol
| LMAU R292 | CIP 104964 | DSM 44240 | HAMBI 1752
Rhodococcus pyridinivorans VP Yoon et al. 2000 PDB9, AF173005 | KCTC

0647BP | KCCM 80005
Rhodococcus rhodnii AL Goodfellow and Alderson 1979 N 445 | ATCC
35071, X81935, Rco.rhodn4 | DSM 43336, X80621, Rco.rhodni | KCC
A-0203 | NCIB 11279
Rhodococcus roseus VP Tsukamura et al. 1991 = Rhodococcus
rhodochrous (senior heterotypic synonym) 212 | ATCC 271,
X81921, Rco.rhodo3 | DSM 43274, X80624, Rco.rhodo5 | JCM 2156
Rhodococcus ruber AL (Kruse 1896) Goodfellow and Alderson 1977 N361
| DSM 43338, X80625, Rco.ruber | NBRC 15591 | IMET 7477 | KCC
A-0205
Rhodococcus rubropertinctus AL (Hefferan 1904) Tsukamura 1974 =
Rhodococcus corallinus (junior heterotypic synonym) -> Gordonia
rubropertincta 154 | ATCC 14352, X81915, Grd.rubpe2 | DSM 43197,
X80632, Grd.rubper | JCM 3204 | KCC A-0204 | NCIB 9664
Rhodococcus sputi VP (ex Tsukamura 1978) Tsukamura and Yano 1985
-> Gordonia sputi 3884 | Nagura 8539 | ATCC 29627, X81923,
Grd.sputi2 | CIP 100849 | DSM 43896, X80634, Grd.sputi | IMET 7569
| JCM 3228 | KCC A-0228
Rhodococcus terrae AL (Tsukamura 1971) Tsukamura 1974 -> Gordonia

terrae ATCC 25594, X81922, Grd.terra3 | DSM 43249, X53202,
238
Grd.terrae | DSM 43249, X79286, Grd.terra2 | IMET 7371 | NCTC

10669
Rhodococcus wratislaviensis VP (Goodfellow et al. 1995) Goodfellow et
al. 2002 <- Tsukamurella wratislaviensis (basonym) N805 | NCIMB
13082, Z37138, Tsu.wrtslv | DSM 44107
Rhodococcus zop?i VP Stoecker et al. 1994 T1 | ATCC 51349, X81934,
Rco.zop?i | DSM 44108
Family VI. Tsukamurellaceae VP
Genus I. Tsukamurella VP (T)
Tsukamurella paurometabola VP (T) (Steinhaus 1941) Collins et al. 1988
<- Corynebacterium paurometabolum (basonym) = Rhodococcus au-
rantiacus (junior heterotypic synonym) ATCC 8368 | DSM 20162,
X53206, Tsu.pauro2 | DSM 20162, X80628, Tsu.pauro4 | DSM 20162,
Z46751, Tsu.pauro7 | NBRC 16083 | IMET 11082 | IMET 7373
Tsukamurella inchonensis VP Yassin et al. 1995 DSM 44067, X85955,
Tsu.inchon | IMMIB D-771, X85955, Tsu.inchon
Tsukamurella pulmonis VP Yassin et al. 1996 DSM 44142 | IMMIB D-1321,
X92981, Tsu.pulmon
Tsukamurella spumae VP Nam et al. 2003 DSM 44113 | N1171, AY238513
| NCIMB 13947
Tsukamurella strandjordii VP Kattar et al. 2002 32-92, AF283283 | ATCC

BAA-173 | DSM 44573
Tsukamurella tyrosinosolvens VP Yassin et al. 1997 DSM 44234, Y12246
| IMMIB D-1397
Tsukamurella wratislaviensis VP Goodfellow et al. 1995 -> Rhodococ-

cus wratislaviensis N 805 | ATCC 51786 | DSM 44107 | IMRU 878 |
NCIMB 13082, Z37138, Tsu.wrtslv
Family VII. "Williamsiaceae"
Genus I. Williamsia VP
Williamsia muralis VP (T) Kmpfer et al. 1999 MA140/96, Y17384,
Wlm.murali | DSM 44343
Williamsia maris VP Stach et al. 2004 SJS0289/JS1, AB010909 | DSM
44693 | JCM 12070
Suborder XI. Micromonosporineae VP
Family I. Micromonosporaceae AL
Genus I. Micromonospora AL (T)
Micromonospora chalcea AL (T) (Foulerton 1905) Orskov 1923 1464-217L
| ATCC 12452, U58531, Mms.chalce | CBS 269.62 | DSM 43026,
X92594, Mms.chalc2 | IAM 14285 | NBRC 13503 | IMET 8209 | JCM

3031 | KCC A-0031
Micromonospora aurantiaca AL Sveshnikova et al. 1969 ATCC 27029
| CBS 129.76 | DSM 43813, X92604, Mms.aurant | NBRC 14068 |
NBRC 16125 | IMET 8216 | INA 9442 | JCM 3232 | KCC A-0232 |
NRRL B-16091 | VKM Ac-613
Micromonospora brunnea AL Sveshnikova et al. 1969 = Micromonospora
purpureochromogenes (senior heterotypic synonym) ATCC 27334 |
CBS 130.76 | DSM 43814, X92605, Mms.brnnea | NBRC 14069 | IMET
8304 | INA 166 | JCM 3233 | NRRL B-16079 | VKM Ac-614
Micromonospora carbonacea subsp. carbonacea AL Luedemann and Brod-
sky 1965 ATCC 27114 | DSM 43168, X92599, Mms.carbon | JCM
3139 | KCC A-0139 | NRRL 2972
Micromonospora carbonacea subsp. aurantiaca AL Luedemann and Brod-
sky 1965 ATCC 27115 | DSM 43815, X92606, Mms.carbo2 | NBRC
14107 | JCM 3168 | KCC A-0168 | NRRL 2997
239
Micromonospora chersina VP Tomita et al. 1992 M956-1 | ATCC 53710 |

DSM 44151
Micromonospora coerulea AL Jensen 1932 36 | ATCC 27008 | DSM 43143,
X92598, Mms.coerul | NBRC 13504 | IMET 8210 | KCC A-0175
Micromonospora echinospora subsp. echinospora AL Luedemann and
Brodsky 1964 ATCC 15837, U58532, Mms.echns4 | CBS 619.66 |
DSM 43816, X92607, Mms.echnsp | NBRC 12574 | IMET 8211 | JCM
3073 | NRRL 2985 | RIA S-420
Micromonospora echinospora subsp. ferruginea AL Luedemann and Brod-
sky 1964 M 4051 | ATCC 15836 | CBS 618.66 | DSM 43141, X92597,
Mms.echns3 | NBRC 14109 | JCM 3221 | KCC A-0221 | NRRL 2995
Micromonospora echinospora subsp. pallida AL Luedemann and Brodsky
1964 ATCC 15838 | CBS 617.66 | DSM 43817, X92608, Mms.echns2
| NBRC 14110 | JCM 3133 | KCC A-0133 | NRRL 2996
Micromonospora gallica AL (Erikson 1935) Waksman 1961 NCTC 4582

Micromonospora halophytica subsp. halophytica AL Weinstein et al. 1968
ATCC 27596 | DSM 43171, X92601, Mms.halphy | JCM 3125 | KCC
A-0125 | NRRL 2998

Micromonospora halophytica subsp. nigra AL Weinstein et al. 1968 ATCC
33088 | DSM 43818, X92609, Mms.halph2 | NRRL 3097
Micromonospora inositola AL Kawamoto et al. 1974 MK-41 | ATCC 21773
| DSM 43819, X92610, Mms.inosit | JCM 6239 | NRRL B-16095
Micromonospora matsumotoense VP (Asano et al. 1989) Lee et al. 2000

<- Catellatospora matsumotoense (basonym) 6393-C | ATCC 49364
| DSM 44100 | FERM BP-1196 | NBRC 14550, AF152109 | IMNSU
22003 | NRRL B-16490

Micromonospora olivasterospora VP Kawamoto et al. 1983 MK70 | ATCC
21819 | DSM 43868, X92613, Mms.olivas | FERM P-1560 | NBRC
14304 | IMET 8310 | JCM 7348
Micromonospora purpurea AL Luedemann and Brodsky 1964 ATCC 15835
| CBS 648.71 | DSM 43036, X92595, Mms.purpur | DSM 43820 | NBRC
12575 | IMET 8212 | JCM 3074 | KCC A-0074 | NRRL 2953

Micromonospora purpureochromogenes AL (Waksman and Curtis 1916)
Luedemann 1971 = Micromonospora brunnea (junior heterotypic
synonym) ATCC 27007 | CBS 326.71 | DSM 43821, X92611,
Mms.preoch | NBRC 13324 | IMET 8213 | IMRU 3343 | JCM 3156 |
NRRL B-16094
Micromonospora rhodorangea AL Wagman et al. 1974 G-418 | ATCC
27932 | DSM 1039 | DSM 43822, X92612, Mms.rhodrn | NRRL 5326
Micromonospora rosaria VP Horan and Brodsky 1986 67694 | SCC 957 |
ATCC 29337 | DSM 803, X92631, Mms.rosari | JCM 3159 | NRRL 3718
Genus II. Actinoplanes AL
Actinoplanes philippinensis AL (T) Couch 1950 ATCC 12427, U58525,
Apl.phlpp3 | CBS 107.58 | DSM 43019, X72864, Apl.phlppn | DSM
43019, X93187, Apl.phlpp2 | IAM 14278 | NBRC 13878, D85474,
Apl.phlpp4 | IMET 9218 | JCM 3001 | KCC A-0001 | NRRL 2506 | RIA
468 | UNCC P-15
Actinoplanes armeniacus AL Kalakoutskii and Kuznetsov 1964 -> Strep-
tomyces armeniacus ATCC 15676 | DSM 43125 | ETH 32694 | IMET
9250 | LBG A 3125 | RIA 26A-32 | RIA 807
Actinoplanes auranticolor VP (Couch 1963) Stackebrandt and Kroppenstedt
1988 <- Amorphosporangium auranticolor (basonym) ATCC 15330
| CBS 189.64 | DSM 43031 | NBRC 12245, U58526, Apl.aurant | KCC
A-0038 | UNCC 253
240
Actinoplanes brasiliensis AL Thiemann et al. 1969 A/672 | MB-T 20 | ATCC

25844 | DSM 43805, X93185, Apl.brasil | KCC A-0196
Actinoplanes caeruleus VP Horan and Brodsky 1986 -> Couchioplanes
caeruleus subsp. caeruleus SCC 1014 | ATCC 33937 | DSM 1037 |
DSM 43634 | NBRC 13939, D14645, Ccp.caerul | IMET 9248 | JCM
3195 | KCC A-0195 | NRRL 5325
Actinoplanes campanulatus VP (Couch 1963) Stackebrandt and Kroppen-
stedt 1988 <- Ampullariella campanulata (basonym) ATCC 15348
| CBS 190.64 | DSM 43148 | NBRC 12511, AB036995 | KCC A-0059 |
UNCC 65
Actinoplanes capillaceus VP Matsumoto et al. 2001 451 K955561,
AB013495 | NBRC 16408 | JCM 10268
Actinoplanes consettensis VP Goodfellow et al. 1990 LA 97 | ATCC 49799
| DSM 43942 | NBRC 14913, AB036996 | NCIB 20027
Actinoplanes cyaneus VP Terekhova et al. 1987 DSM 46137, X93186,

Apl.cyaneu | IMET 9243 | INA 1569 | VKM Ac 1095
Actinoplanes deccanensis AL Parenti et al. 1975 A/10655 | MB-T 21 | ATCC
21983 | DSM 43806 | NBRC 14935, AB036999 | IMET 9256 | JCM 3247
| KCC A-0247
Actinoplanes derwentensis VP Goodfellow et al. 1990 LA 107 | ATCC

49798 | DSM 43941 | NBRC 14935, AB036999 | NCIB 12875
Actinoplanes digitatis VP (Couch 1963) Stackebrandt and Kroppenstedt
1988 <- Ampullariella digitata (basonym) ATCC 15349 | CBS
191.64 | DSM 43149 | NBRC 12512, AB037000 | KCC A-0068 | UNCC
33
Actinoplanes durhamensis VP Goodfellow et al. 1990 LA 139 | ATCC
49800 | DSM 43939 | NBRC 14914, AB037001 | NCIB 20041
Actinoplanes ferrugineus AL Palleroni 1979 MB-T 22 | X-14695 | ATCC
29868 | DSM 43807 | NBRC 15555, AB037002 | IMET 9273 | JCM
3277, AB048221 | KCC A-0277
Actinoplanes friuliensis VP Aretz et al. 2001 HAG 010964 | DSM 7358 452 453
Actinoplanes globisporus VP (Thiemann 1967) Stackebrandt and Kroppen-
stedt 1988 <- Amorphosporangium globisporum (basonym) SS/37 |
ATCC 23056 | DSM 43857 | DSM 43894 | NBRC 13912, AB037003 |
IMET 9263 | JCM 3186 | KCC A-0186
Actinoplanes humidus VP Goodfellow et al. 1990 LA 6 | ATCC 49801 | DSM
43938 | NBRC 14915, AB037004 | NCIB 20000
Actinoplanes italicus AL Beretta 1973 A-5221 | ATCC 27366 | DSM 43146
| NBRC 13911, AB037005 | IMET 9251 | JCM 3165, AB048217 | KCC
A-0165
Actinoplanes lobatus VP (Couch 1963) Stackebrandt and Kroppenstedt 1988
<- Ampullariella lobata (basonym) ATCC 15350 | CBS 192.64 | DSM
43150 | NBRC 12513, AB037006 | KCC A-0061 | UNCC 72
Actinoplanes minutisporangius VP Ruan et al. 1986 -> Cryptosporangium
minutisporangium A-60 | NBRC 15962, AB037007 | IMRU LL-A-6
Actinoplanes missouriensis AL Couch 1963 ATCC 14538 | CBS 188.64 |
DSM 43046 | NBRC 13243, AB037008 | IMET 9249 | KCC A-0121
Actinoplanes palleronii VP Goodfellow et al. 1990 LA 83 | ATCC 49797 |
DSM 43940 | NBRC 14916, AB037009 | NCIB 20021
45 1
45 2
45 3
Pa tent stra in, restricted a va ilability.
241
Actinoplanes rectilineatus AL Lechevalier and Lechevalier 1975 LL 7-10 |

MB-T 24 | ATCC 29234 | DSM 43808 | NBRC 13941, AB037010 | IMET
9276 | IMRU 3919 | KCC A-0194
Actinoplanes regularis VP (Couch 1963) Stackebrandt and Kroppenstedt
1988 <- Ampullariella regularis (basonym) CBS 193.64 | DSM
43151, X93188, Apl.reglar | IAM 14279 | NBRC 12514 | IMET 9268 |
JCM 3062 | KCC A-0062 | RIA 821 | UNCC 79
Actinoplanes utahensis AL Couch 1963 ATCC 14539 | CBS 367.66 | DSM
43147 | NBRC 13244, AB037012 | IMET 9252 | JCM 3122 | KCC
A-0122 | UNCC 260
Genus III. Asanoa VP
Asanoa ferruginea VP (T) (Asano and Kawamoto 1986) Lee and Hah 2002
6257-C | DMS 44099 | NBRC 14496 | IMSNU 22009, AF152108
Asanoa ishikariensis VP Lee and Hah 2002 NBRC 14551, AJ294715 | IM-
SNU 22004 |
Genus IV. Catellatospora VP
Catellatospora citrea subsp. citrea VP (T) Asano and Kawamoto 1986
6183-E | ATCC 49964 | DSM 44097, X93197, Ctl.citrea | NBRC 14495,
D85477, Ctl.citre3 | JCM 7542 | NRRL B-16429
Catellatospora citrea subsp. methionotrophica VP Asano and Kawamoto
1988 6257-B | ATCC 49965 | DSM 44098, X93198, Ctl.citre2 | NBRC
14553 | JCM 7543 | NRRL B-16431
Catellatospora ferruginea VP Asano and Kawamoto 1986 6257-C | ATCC
49966 | DSM 44099, X93199, Ctl.ferrug | NBRC 14496 | JCM 7544 |
NRRL B-16430
Catellatospora koreensis VP Lee et al. 2000 LM 042, AF171700 | IMSNU
50729
Catellatospora matsumotoense VP Asano et al. 1989 -> Micromonospora
matsumotoense 6393-C | ATCC 49364 | DSM 44100 | FERM BP-1196
| NBRC 14550, AF152109 | IMNSU 22003 | NRRL B-16490
Catellatospora tsunoense VP Asano et al. 1989 6420-P | ATCC 49635 | DSM

44101, X93200, Ctl.tsuoen | FERM BP-1195 | NBRC 14552 | NRRL
B-16491
Genus V. Catenuloplanes VP
Catenuloplanes japonicus VP (T) Yokota et al. 1993 N381-16 | ATCC 31637 |
DSM 44102, X93201, Cat.japon1 | NBRC 14176, D14642, Cat.japon2
Catenuloplanes atrovinosus VP Tamura et al. 1995 RA332 | NBRC 15579
Catenuloplanes castaneus VP Tamura et al. 1995 RA344 | NBRC 15584
Catenuloplanes crispus VP (Petrolini et al. 1993) Kudo et al. 1999 <-
Planopolyspora crispa (basonym) ATCC 51431 | DSM 44128 | NBRC
15622 | IPV 2867 | JCM 9312, AB024701 | NCB 1173
Catenuloplanes indicus VP Tamura et al. 1995 RA328 | NBRC 15575
Catenuloplanes nepalensis VP Tamura et al. 1995 RA343 | NBRC 15583,
D85476, Cat.japon5
Catenuloplanes niger VP Tamura et al. 1995 N406-14 | ATCC 31638 |
NBRC 14177, D14643, Cat.japon4
Genus VI. Couchioplanes VP
Couchioplanes caeruleus subsp. caeruleus VP (T) (Horan and Brodsky
1986) Tamura et al. 1994 <- Actinoplanes caeruleus (basonym)
SCC 1014 | ATCC 33937 | DSM 1037 | DSM 43634 | NBRC 13939,
D14645, Ccp.caerul | NBRC 13939, D85479, Ccp.caeru2 | IMET 9248
| JCM 3195 | KCC A-0195 | NRRL 5325
Couchioplanes caeruleus subsp. azureus VP Tamura et al. 1994 ATCC

31157 | DSM 44103, X93202, Cat.caurul | NBRC 13993, D85478,
Ccp.caeru3
242
Genus VII. Dactylosporangium AL

Dactylosporangium aurantiacum AL (T) Thiemann et al. 1967 D-748 |
ATCC 23491, U58528, Dct.auran4 | DSM 43157, X72779, Dct.aurant
| DSM 43157, X93191, Dct.auran2 | NBRC 12592, D85480, Dct.au-
ran3 | IMET 9028 | JCM 3083 | KCC A-0083 | RIA 922

Dactylosporangium fulvum VP Shomura et al. 1986 SF-2113 | ATCC 43301 |
DSM 43917, X93192, Dct.fulvum | NBRC 14381, D86942, Dct.fulvu2
| JCM 5631
Dactylosporangium matsuzakiense VP Shomura and Niida 1983 SF-2052

| ATCC 31570 | DSM 43810, X93193, Dct.matsuz | FERM-P 4670 |
NBRC 14259, D86940, Dct.matsu2 | JCM 3311 | KCC A-0311

Dactylosporangium roseum VP Shomura et al. 1985 SF-2186 | DSM
43916, X93194, Dct.roseum | NBRC 14352, D86941, Dct.roseu2 |
NBRC 14352, U58529, Dct.roseu3 | JCM 3364
Dactylosporangium thailandense AL Thiemann et al. 1967 D-449 | ATCC
23490 | DSM 43158, X92630, Dct.thailn | NBRC 12593, D85481,
Dct.thail2 | IMET 9029 | KCC A-0084
Dactylosporangium vinaceum VP Shomura et al. 1983 SF-2127 | ATCC
35207 | DSM 43823, X93196, Dct.vinace | NBRC 14181, D86939,
Dct.vinac2 | JCM 3307 | KCC A-0307 | NCIMB 12891
Genus VIII. Pilimelia AL
Pilimelia terevasa AL (T) Kane 1966 ATCC 25603 | DSM 43040, X93190,
Plm.terev2 | NBRC 14556, D86946, Plm.tereva | IMET 9270 | KCC
A-0091
Pilimelia anulata AL Kane 1966 ATCC 25604 | DSM 43039, X93189,
Plm.anulat | IMET 9269 | KCC A-0090
Pilimelia columellifera subsp. pallida VP Vobis et al. 1986 MB-SK8 | DSM
43799
Pilimelia columellifera subsp. columellifera VP Vobis et al. 1986 MB-SK6
| CBS 568.75 | DSM 43797
Genus IX. Spirilliplanes VP

Spirilliplanes yamanashiensis VP (T) Tamura et al. 1997 YU127-1 | DSM
44325 | NBRC 15828, D63912, Sp.yamansh
Genus X. Verrucosispora VP
Verrucosispora gifhornensis VP (T) Rheims et al. 1998 HR1-2, Y15523,
Vs.gifhorn | DSM 44337 | JCM 10457
Genus XI. Virgisporangium VP
Virgisporangium ochraceum VP (T) Tamura et al. 2001 454 YU65543,
AB006167 | NBRC 16418
Virgisporangium aurantiacum VP Tamura et al. 2001 455 YU4385,
AB006169 | NBRC 16421 | JCM 11002
Suborder XII. Propionibacterineae VP
Family I. Propionibacteriaceae AL
Genus I. Propionibacterium AL (T)
Propionibacterium freudenreichii subsp. freudenreichii AL (T) (van Niel
1928) Moore and Holdeman 1970 53-W | ATCC 6207 | CCM 1857
| DSM 20271, X53217, Prp.freud1 | NCDO 564 | NCIB 5959 | NCTC
10470
Propionibacterium freudenreichii subsp. shermanii AL (van Niel 1928)
Holdeman and Moore 1970 E11.1 | ATCC 9614 | DSM 4902, Y10819,
Prp.freud4 | NCDO 853 | NCIB 8099 | VPI 0405
45 4
45 5
243
Propionibacterium acidipropionici AL Orla-Jensen 1909 14X | ATCC

25562 | DSM 4900 | VPI 0399
Propionibacterium acnes AL (Gilchrist 1900) Douglas and Gunter 1946
ATCC 6919 | DSM 1897, X53218, Prp.acnes1 | NCTC 737
Propionibacterium australiense VP Bernard et al. 2002 98A078,
AF225962 | ATCC BAA-263 | CCUG 46075
Propionibacterium avidum AL (Eggerth 1935) Moore and Holdeman 1969
1689B | ATCC 25577 | DSM 4901, AJ003055, Prp.avidu2 | VPI 0179
Propionibacterium cyclohexanicum VP Kusano et al. 1997 TA-12, D82046
| IAM 14535 | NRIC 0247
Propionibacterium granulosum AL (Prevot 1938) Moore and Holdeman

1970 ATCC 25564 | DSM 20700, AJ003057, Prp.granu2 | VPI 0507
Propionibacterium innocuum VP Pitcher and Collins 1992 -> Propi-
oniferax innocua L60 | ATCC 49929, AF227165 | DSM 8251 | NCTC
11082
Propionibacterium jensenii AL van Niel 1928 29 | ATCC 4868 | DSM 20535,
X53219, Prp.jense1 | NCDO 850 | NCIB 8071
Propionibacterium lymphophilum AL (Torrey 1916) Johnson and Cummins
1972 -> Propionimicrobium lymphophilum ATCC 27520 | DSM 4903,
AJ003056, Prp.lymph2 | JCM 5829 | VPI 7625B
Propionibacterium microaerophilum VP Koussmon et al. 2001 M5,
AF234623 | CNCM I-2360 | DSM 13435
Propionibacterium propionicum VP (Buchanan and Pine 1962) Charfreitag
et al. 1988 <- Arachnia propionica (basonym) 699 | ATCC 14157 |
DSM 43307, AJ003058, Prp.propi2 | DSM 43307, X53216, Prp.propio
| IMET 10974
Propionibacterium thoenii AL van Niel 1928 15 | ATCC 4874 | CCM 1865 |

DSM 20276, X53220, Prp.thoen1 | NCDO 568 | NCIB 5966
Genus II. Luteococcus VP
Luteococcus japonicus VP (T) Tamura et al. 1994 ATCC 51526 | CIP 104067
| DSM 10546, Z78208, Lut.japon3 | NBRC 12422, D21245, Lut.japoni
| NBRC 12422, D85487, Lut.japon2 | JCM 9415
Luteococcus peritonei VP Collins et al. 2000 CCUG 38120, AJ132334,

AJ132334
Luteococcus sanguinis VP Collins et al. 2003 CCUG 33897, AJ416758 |
CIP 107216
Genus III. Microlunatus VP
Microlunatus phosphovorus VP (T) Nakamura et al. 1995 NM-1, D26169,
Mcl.phpho3 | DSM 10555, Z78207, Mcl.phpho2 | JCM-9379
Genus IV. Propioniferax VP
Propioniferax innocua VP (T) (Pitcher and Collins 1992) Yokota et al. 1994
<- Propionibacterium innocuum (basonym) L60 | ATCC 49929,
AF227165 | DSM 8251 | NCTC 11082
Genus V. Propionimicrobium VP
Propionimicrobium lymphophilum VP (T) (Torrey 1916) Stackebrandt et al.
2002 <- Propionibacterium lymphophilum (basonym) ATCC 27520,
AJ003056, DSM 4903
Genus VI. Tessaracoccus VP
Tessaracoccus bendigoensis VP (T) Maszenan et al. 1999 Ben 106,
AF038504, Tsc.bndign | ACM 5119, AF038504, Tsc.bndign
Family II. Nocardioidaceae VP
Genus I. Nocardioides AL (T)
Nocardioides albus AL (T) Prauser 1976 652-48 | ATCC 27980 | CCM 2712 |
DSM 43109, X53211, Ncr.albus | IMET 7807 | JCM 3185 | KCTC 9186,
AF004988, Ncr.albus2 | NCIB 11454
244
Nocardioides aquaticus VP Lawson et al. 2000 EL-17K | DSM 11439 |

NCFB 3076
Nocardioides aquiterrae VP Yoon et al. 2004 GW-9, AF529063 | JCM
11813 | KCCM 41647
Nocardioides fastidiosus VP Collins and Stackebrandt 1989 -> Aeromi-
crobium fastidiosum J41 | DSM 10552, Z78209, Armb.fast3 | NBRC
14897 | NCIB 12713, X53189, Armb.fast2 | NCIB 12713, X76862,
Armb.fasti
Nocardioides jensenii VP (Suzuki and Komagata 1983) Collins et al. 1989
<- Pimelobacter jensenii (basonym) CNF 091 | ATCC 49810 | DSM
20641, X53214, Ncr.jensen | DSM 20641, Z78210, Ncr.jense2 | IAM
12581 | NBRC 14755 | IMET 10678 | JCM 1364 | NCIB 9770
Nocardioides luteus VP Prauser 1985 939-9 | ATCC 43052 | DSM 43366
| DSM 43811 | NBRC 14491 | IMET 7830 | JCM 3358 | NCIB 11455,
X53212, Ncr.luteus
Nocardioides nitrophenolicus VP Yoon et al. 1999 NSP41, AF005024,
Ncr.nitrph | KCTC 0457BP
Nocardioides plantarum VP Collins et al. 1994 Grainger J70 | DSM 11054,
Z78211, Ncr.plant2 | NCIMB 12834, AF005008, Ncr.plant3 | NCIMB
12834, X69973, Ncr.planta
Nocardioides pyridinolyticus VP Yoon et al. 1997 OS4, U61298, Ncr.pyrlyt
| KCTC 0074B
Nocardioides simplex VP (Jensen 1934) ODonnell et al. 1983 <- Arthrobac-

ter simplex (basonym) = Pimelobacter simplex (senior homotypic syn-
onym) ATCC 6946, M37693, Ncr.simpl2 | CCM 1652 | DSM 20130,
Z78212, Ncr.simpl3 | IAM 1660 | IMET 10368 | JCM 1363 | KCTC 9106,
AF005009, Ncr.simpl4 | NCIB 8929, X53213, Ncr.simplx | NCTC 4215
Genus II. Aeromicrobium VP
Aeromicrobium erythreum VP (T) Miller et al. 1991 ATCC 51598 | DSM
8599 | NRRL B-3381, AF005021, Armb.eryt5 | NRRL B-3381,
M37200, Armb.eryth
Aeromicrobium fastidiosum VP (Collins and Stackebrandt 1989) Tamura
and Yokota 1994 <- Nocardioides fastidiosus (basonym) J41 | DSM
10552, Z78209, Armb.fast3 | NBRC 14897 | NCIB 12713, X53189,
Armb.fast2 | NCIB 12713, X76862, Armb.fasti
Aeromicrobium marinum VP Bruns et al. 2003 T2, AY166703 | DSM 15272
| LMG 21768
Genus III. Actinopolymorpha VP

Actinopolymorpha singaporensis VP (T) Wang et al. 2001 IM 7744,
AF237815 | JCM 10761 | NRRL B-24113
Genus IV. Friedmanniella VP
Friedmanniella antarctica VP (T) Schumann et al. 1997 AA-1042 | DSM
11053, Z78206, Frd.antarc
Friedmanniella capsulata VP Maszenan et al. 1999 Ben 108 | ACM 5120,
AF084529
Friedmanniella lacustris VP Lawson et al. 2000 EL-17A, AJ132943 | DSM
11465
Friedmanniella spumicola VP Maszenan et al. 1999 Ben 107 | ACM 5121,
AF062535
Genus V. Hongia VP
Hongia koreensis VP (T) Lee et al. 2000 LM 161, Y09159 | IMSNU 50530
-> Kribbella koreensis
Genus VI. Kribbella VP
Kribbella ?avida VP (T) Park et al. 1999 NBRC 14399, AF005017,
Kr.? avida | KCTC 9580
245
Kribbella koreensis VP (T) (Lee et al. 2000) Sohn et al. 2003 <- Hongia
koreensis (basonym) LM 161 | IMSNU 50530, Y09159 | JCM 10977
Kribbella sandramycini VP Park et al. 1999 ATCC 39419, AF005020,
Kr.sndrmyc | KCTC 9609
Genus VII. Micropruina VP
Micropruina glycogenica VP (T) Shintani et al. 2000 Lg2 | JCM 10248,
AB012607
Genus VIII. Marmoricola VP
Marmoricola aurantiacus VP (T) Urz et al. 2000 BC 361, Y18629 | DSM
12652
Genus IX. Propionicimonas VP
Propionicimonas paludicola VP (T) Akasaka et al. 2003 DSM 15597 | JCM
11933 | Wd, AB078858
Suborder XIII. Pseudonocardineae VP
Family I. Pseudonocardiaceae VP
Genus I. Pseudonocardia AL (T)
Pseudonocardia thermophila AL (T) Henssen 1957 A18 | ATCC 19285,
X53195, Psc.therm2 | CBS 277.66 | DSM 43832 | IAM 14290 | JCM
3095 | NCIB 10079
Pseudonocardia alaniniphila VP (Xu et al. 1999) Huang et al. 2002 <-
Actinobispora alaniniphila (basonym) CCTCC AA97001 | Y-16303,
AF056708, Abi.alniph
Pseudonocardia alni VP (Evtushenko et al. 1989) Warwick et al. 1994 <-
Amycolata alni (basonym) 3LS | DSM 44104, Y08535, Psc.alni2 |
NBRC 14991 | VKM Ac-901, X76954, Psc.alni
Pseudonocardia asaccharolytica VP Reichert et al. 1998 580 | DSM 44247,
Y08536, Psc.asacch | NBRC 16224
Pseudonocardia aurantiaca (Xu et al. 1999) Huang et al. 2002 <- Acti-
nobispora aurantiaca (basonym) CCTCC AA97002, AF056707,
AF056707, Abi.aurant | Y-14860
Pseudonocardia autotrophica VP (Takamiya and Tubaki 1956) Warwick et
al. 1994 <- Amycolata autotrophica (basonym) 394 | ATCC 19727 |
CBS 466.68 | DSM 40011 | DSM 43210, X54288, Psc.autotr | DSM 535
| NBRC 12743 | IMET 7646 | ISP 5011 | KCC S-0348 | RIA 1008
Pseudonocardia azurea VP Omura et al. 1983 -> Amycolatopsis azurea

AM-3696 | ATCC 51273 | DSM 43854 | FERM-P 4738 | JCM 3275 |
NRRL 11412, X53199, Amy.azurea

Pseudonocardia chloroethenivorans VP Lee et al. 2004 SL-1, AF454510 |
Pseudonocardia compacta VP Henssen et al. 1983 MB H-146 | ATCC
35407 | CBS 160.82 | DSM 43592, X76959, Psc.compac | NBRC 14343
| JCM 7438
Pseudonocardia halophobica VP (Akimov et al. 1989) McVeigh et al. 1994

<- Pseudoamycolata halophobica (basonym) SS1/1 | ATCC 51535 |
DSM 43089, Y08534, Psc.hphob2 | DSM 43089, Z14111, Psc.hphobi
| DSM 656 | IMRU 1300 | JCM 9421 | NRRL B-16064 | VKM Ac-1069
Pseudonocardia hydrocarbonoxydans VP (Nolof and Hirsch 1962) Warwick

et al. 1994 <- Amycolata hydrocarbonoxydans (basonym) Schering
228 | ATCC 15104 | DSM 43281, X76955, Psc.hcarbo | IMET 7645 |
NCIB 9436 | NRRL B 16171
Pseudonocardia kongjuensis VP Lee et al. 2001 LM 157, AJ252833 | DSM
44525 | IMSNU 50583 | KCTC 9990
Pseudonocardia nitri?cans VP (ex Schatz et al. 1954) Warwick et al. 1994
IFAM 379
246
Pseudonocardia petroleophila VP (Hirsch and Engel 1956) Warwick et

al. 1994 <- Nocardia petroleophila (basonym) 78 | ATCC 15777,
X80596, Psc.petrol | DSM 43193 | DSM 655 | IFAM 78, X55608,
Amc.petrop | NBRC 14406 | IMET 7162 | JCM 3378 | JCM 3394 | NCIB
9438
Pseudonocardia saturnea VP (Hirsch 1960) Warwick et al. 1994 <- Amy-
colata saturnea (basonym) 71 | ATCC 15809 | DSM 43195, X76956,
Psc.saturn | IMET 7647 | IMRU 1181 | NCIB 9437 | NRRL B 16172
Pseudonocardia spinosa AL Schfer 1971 ATCC 25924
Pseudonocardia spinosispora VP Lee et al. 2002 LM 141, AJ249206 | IM-
SNU 50581 | KCTC 9991 | NRRL B-24156
Pseudonocardia sul?doxydans VP Reichert et al. 1998 592 | DSM 44248,
Y08537, Psc.slfoxy | NBRC 16205
Pseudonocardia xinjiangensis VP (Xu et al. 1999) Huang et al. 2002 <-
Actinobispora xinjiangensis (basonym) XJ-45, Scm.xinjia | CCTCC
AA97020, AF056709
Pseudonocardia yunnanensis VP (Jiang et al. 1991) Huang et al. 2002
<- Actinobispora yunnanensis (basonym) Y-11981, AF056706,
Abi.yunnan | CCTCC M 90959 | DSM 44253 | NBRC 15681, D85472,
Abi.yunna2 | JCM 9330
Pseudonocardia zijingensis VP Huang et al. 2002 6330, AF325725 | AS
4.1545 | JCM 11117
Genus II. Actinoalloteichus VP
Actinoalloteichus cyanogriseus VP (T) Tamura et al. 2000 AS 4.1159 | DSM
43889 | NBRC 14455, AB006178
Genus III. Actinopolyspora AL
Actinopolyspora halophila AL (T) Gochnauer et al. 1975 ATCC 27976,
X54287, Acy.haloph | DSM 43834 | NBRC 14106 | JCM 3278 | KCC
A-0278 | NCIB 11472, X54287, Acy.haloph
Actinopolyspora iraqiensis VP Ruan et al. 1994 IQ-H1 | CCIM A.S. 4.1193
Actinopolyspora mortivallis VP Yoshida et al. 1991 HS-1 | ATCC 49777
| CCRC 13635 | DSM 44261 | NBRC 15162 | JCM 7550, Z22730,
Acy.mortiv | NCIMB 13257

Genus IV. Amycolatopsis VP
Amycolatopsis orientalis subsp. orientalis VP (T) (Pittenger and Brigham
1956) Lechevalier et al. 1986 <- Nocardia orientalis (basonym)
M 43-05865 | ATCC 19795 | CBS 547.68 | CCM 2778 | DSM 40040,
X76958, Amy.orient | IAM 14281 | NBRC 12360 | NBRC 12806,
D86935, Amy.orien3 | IMET 7510 | IMET 7653 | ISP 5040 | JCM 4235 |
JCM 4600 | KCC S-0235 | KCC S-0600 | NRRL 2450 | RIA 1074
Amycolatopsis orientalis subsp. lurida VP (Grundy et al. 1957) Lecheva-
lier et al. 1986 -> Amycolatopsis lurida 24315 | NA 3-TE-19 | ATCC
14930 | DSM 43134, AJ577997 | DSM 43192 | NBRC 14500 | IMET
7654 | JCM 3141 | LBG A 3091 | NCIB 9601 | NRRL 2430
Amycolatopsis alba VP Mertz and Yao 1993 A83850 | ATCC 51368 | DSM
44262, AF051340, Amy.alba1 | NBRC 15602 | NRRL 18532
Amycolatopsis albido?avus VP Lee and Hah 2001 ATCC 53205 | IMSNU
22139, AJ252832 | KCTC 9471
Amycolatopsis azurea VP (Omura et al. 1983) Henssen et al. 1987 <-
Pseudonocardia azurea (basonym) AM-3696 | ATCC 51273 | DSM
43854 | FERM-P 4738 | JCM 3275 | NRRL 11412, X53199, Amy.azurea
Amycolatopsis balhimycina VP Wink et al. 2003 FH 1894 | DSM 44591,
AJ508239 | NRRL B-24207
Amycolatopsis coloradensis VP Labeda 1995 ATCC 53629 | DSM 44225 |
NBRC 15804 | NRRL 3218, AF051341, Amy.colora
247
Amycolatopsis eurytherma VP Kim et al. 2002 NT202, AJ000285 | DSM

44348 | NCIMB 13795
Amycolatopsis decaplanina VP Wink et al. 2004 FH 1845 | DSM 44594,
AJ508237 | NRRL B-24209
Amycolatopsis fastidiosa VP (ex Celmer et al. 1977) Henssen et al. 1987
FD 25028 | ATCC 31181, X53200, Amy.fastid | DSM 43855 | NBRC
14105 | JCM 3276

Amycolatopsis japonica VP Goodfellow et al. 1997 MG417-CF17 | DSM
44213, AJ508236, AJ508236
Amycolatopsis keratiniphila VP Al-Mussalam et al. 2003 D2 | DSM 44409,
AJ278496 | NRRL B-24117
Amycolatopsis keratiniphila subsp. keratiniphila VP Al-Musallam et al.
2003 D2 | DSM 44409, AJ278496 | NRRL B-24117
Amycolatopsis keratiniphila subsp. nogabecina VP Wink et al. 2003 FH
1893 | DSM 44586, AJ508238 | NRRL B-24206
Amycolatopsis lurida (Lechevalier et al. 1986) Stackebrandt et al. 2004
<- Amycolatopsis orientalis subsp. lurida (basonym) DSM 43134,
AJ577997 | NRRL 2430
Amycolatopsis mediterranei VP (Margalith and Beretta 1960) Lechevalier
et al. 1986 <- Nocardia mediterranei (basonym) ME 83/973 | PSA
71 | Schering 368 | ATCC 13685, X76957, Amy.medter | CBS 121.63 |
CBS 716.72 | DSM 40501 | DSM 43304 | NBRC 13415 | IMET 7651 |
ISP 5501 | JCM 4789 | KCC S-0789 | LBG A 3136 | NCIB 9613 | NRRL
B-3240 | RIA 1376 | VKM Ac-798
Amycolatopsis methanolica VP de Boer et al. 1990 239 | DSM 44096 | NBRC
15065 | JCM 8087 | LMD 80.32 | NCIB 11946, X54274, Amy.methan
Amycolatopsis palatopharyngis VP Huang et al. 2004 1BDZ, AF479268 |
AS 4.1729 | PCM 2600
Amycolatopsis rubida VP Huang et al. 2001 13.4, AF222022 | AS 4.1541 |
JCM 10871
Amycolatopsis rugosa VP (ex di Marco and Spalla 1957) Lechevalier et al.
1986 = Nocardia rugosa (homotypic synonym) -> Prauserella rugosa
ATCC 43014 | DSM 43194, AF051342, Prl.rugosa | NBRC 14506 |
IMET 7650 | IMRU 3760 | JCM 3193 | KCC A-0193 | NCIB 8926 | NRRL
2295
Amycolatopsis sacchari VP Goodfellow et al. 2001 K24, AF223354 | DSM
44468 | KCTC 9863
Amycolatopsis sulphurea VP (ex Oliver and Sinclair 1964) Lechevalier et
al. 1986 = Nocardia sulphurea (homotypic synonym) ATCC 27624
| DSM 46092, AF051343, Amy.sulphu | NBRC 13270 | IMET 7649 |
JCM 3142 | KCC A-0142 | NRRL 2822

Amycolatopsis thermo?ava VP Chun et al. 1999 N1165 | NBRC 14333,
AF052390
Amycolatopsis tolypomycina VP Wink et al. 2003 ATCC 21177 | DSM
44544, AJ508241 | NBRC 14664 (previously NBRC 14664) | NRRL
B-24205
Amycolatopsis vancoresmycina VP Wink et al. 2003 ST 101170 | DSM
44592, AJ508240 | NRRL B-24208
Genus V. Crossiella VP
Crossiella cryophila VP (T) (Labeda and Lechevalier 1989) Labeda 2001 <-
Saccharothrix cryophilis (basonym) TS-1980 | ATCC 51143 | DSM
44230 | NBRC 14475 | JCM 9111 | NCIMB 13187 | NRRL B-16238,
AF114806
Crossiella equi VP Donahue et al. 2002 DSM 44580 | LDDC 22291-98 |
NRRL B-24104, AF245017
248
Genus VI. Kibdelosporangium VP

Kibdelosporangium aridum subsp. aridum VP Shearer et al. 1986 ATCC
39323 | DSM 43828, AJ311174 | NBRC 14493 | JCM 7912 | SKF-AAD-
216
Kibdelosporangium aridum subsp. largum VP Shearer et al. 1988 ATCC
39922 | DSM 44150, AJ512463 | NBRC 15152 | SKF-AAD-609
Kibdelosporangium albatum VP Tomita et al. 1993 R761-7 | ATCC 55061 |
DSM 44149, AJ512462
Kibdelosporangium philippinense VP Mertz and Yao 1988 A80407 | ATCC
49844 | DSM 44226, AJ512464 | NRRL 18198
Genus VII. Kutzneria VP
Kutzneria viridogrisea VP (T) (Okuda et al. 1966) Stackebrandt et al. 1994
<- Streptosporangium viridogriseum subsp. viridogriseum (basonym)
MCRL 0044 | ATCC 25242 | DSM 43850, X70429, Kt.viridog | JCM
3282, U58530, Kt.virido2 | NIHJ 523

Kutzneria albida VP (Furumai et al. 1968) Stackebrandt et al. 1994 <-
Streptosporangium albidum (basonym) MCRL 048 | ATCC 25243 |
DSM 43870 | NBRC 13901
Kutzneria kofuensis VP (Nonomura and Ohara 1969) Stackebrandt et al.
1994 <- Streptosporangium viridogriseum subsp. kofuense (ba-
sonym) S2-28 | ATCC 27102 | CBS 803.70 | DSM 43851 | NBRC
13989 | NRRL B-24061, AF114801 | JCM 3157
Genus VIII. Prauserella VP
Prauserella rugosa VP (T) (Lechevalier et al. 1986) Kim and Goodfellow
1999 <- Amycolatopsis rugosa (basonym) ATCC 43014 | DSM
43194, AF051342, Prl.rugosa | IMET 7650 | IMRU 3760 | JCM 3193 |
NCIMB 8926
Genus IX. Saccharomonospora AL
Saccharomonospora viridis AL (T) (Schuurmans et al. 1956) Nonomura and
Ohara 1971 P101 | ATCC 15386, X54286, Scm.viridi | CBS 484.63 |
DSM 43017 | DSM 43018 | DSM 43754 | NBRC 12207 | IMET 9550 |
KCC A-0036 | NCIB 9602, Z38007, Scm.virid3 | NRRL B-3044
Saccharomonospora azurea VP Runmao 1987 NA-128, Z38017,
Scm.azurea | SIIA 86128
Saccharomonospora cyanea VP Runmao et al. 1988 NA-134, Z38018,
Scm.cyanea | Na-2468 | ATCC 43724 | DSM 44106 | NBRC 14841 | JCM
7552 | SIIA 86134
Saccharomonospora glauca VP Greiner-Mai et al. 1988 K62 | DSM 43769,
Z38003, Scm.glauca | NBRC 14841 | JCM 7444
Saccharomonospora halophila VP Al-Zarban et al. 2002 8 | DSM 44411,
AJ278497 | NRRL B-24125
Saccharomonospora xinjiangensis VP Jin et al. 1998 XJ-54, AF056710,
Scm.xinji2 | CCTCC AA9702, AF056710, Scm.xinji2
Genus X. Saccharopolyspora AL
Saccharopolyspora hirsuta subsp. hirsuta AL (T) Lacey and Goodfellow
1975 ATCC 27875, M20388, Scp.hirsut | ATCC 27875, U93341,
Scp.hirhir | ATCC 27875, X53196, Scp.hirsu1 | CBS 42074 | DSM
43402 | NCIB 11079 | NRRL B-5792
Saccharopolyspora hirsuta subsp. kobensis VP Lacey 1989 KC 6606 |
ATCC 20501 | FERM-P 3912
Saccharopolyspora hirsuta subsp. taberi VP Labeda 1987 -> Saccha-
ropolyspora taberi LL-WRAT-210 | ATCC 49842 | DSM 43856,
AF002819, Scp.taberi | NBRC 15061 | IMET 7648 | NRRL B-16173
Saccharopolyspora erythraea VP (Waksman 1923) Labeda 1987 <-
Streptomyces erythraeus (basonym) M-5-12559 | ATCC 11635 | CBS
249
727.72 | DSM 40517 | DSM 41036 | NBRC 13426 | ISP 5517 | JCM 4026
| JCM 4748 | NCIB 8594 | NRRL 2338, X53198, Scp.erythr | RIA 1387
Saccharopolyspora ?ava VP Lu et al. 2001 07 | AS4.1520, AF154128 |

NBRC 16345 | JCM 10665
Saccharopolyspora gregorii VP Goodfellow et al. 1989 A85 | DSM 44324
| NCIB 12823, X76962, Scp.gregor
Saccharopolyspora hordei VP Goodfellow et al. 1989 A54, X53197,

Scp.hordei | A735 | ATCC 49856 | DSM 44065 | NBRC 15046 | JCM
8090 | NCIB 12824
Saccharopolyspora rectivirgula VP (Krassilnikov and Agre 1964)
Korn-Wendisch et al. 1989 <- Faenia rectivirgula (basonym)
ATCC 33515, M20387, Scp.rectiv | ATCC 33515, X53194, Scp.recti2
| BKM A-810 | DSM 43747 | INMI 683 | KCC A-0057 | VKM Ac-810
Saccharopolyspora spinosa VP Mertz and Yao 1990 A83543.1 | ATCC

49460 | DSM 44228, AF002818, Scp.spinos | NRRL 18395
Saccharopolyspora spinosporotrichia VP Zhou et al. 1998 AS4.198,
Y09571, Scp.spnstr | DSM 44350
Saccharopolyspora taberi VP (Labeda 1987) Korn-Wendisch et al. 1989
<- Saccharopolyspora hirsuta subsp. taberi (basonym) LL-WRAT-
210 | ATCC 49842 | DSM 43856, AF002819, Scp.taberi | NBRC 15061
| IMET 7648 | NRRL B-16173
Saccharopolyspora thermophila VP Lu et al. 2001 216 | AS4.1511,

AF127526 | NBRC 16346 | JCM 10664
Genus XI. Streptoalloteichus VP
Streptoalloteichus hindustanus VP (T) Tomita et al. 1987 C677-91 | ATCC
31217 | DSM 44318 | NBRC 15115 | D85497
Genus XII. Thermobispora VP
Thermobispora bispora VP (T) (Henssen 1957) Wang et al. 1996 <- Micro-
bispora bispora (basonym) R51 | ATCC 19993, U58523, Ths.bispo5
| ATCC 19993, U83909, Ths.bispo2 | ATCC 19993, U83910, Ths.bis-
por | ATCC 19993, U83911, Ths.bispo3 | ATCC 19993, U83912,

Ths.bispo4 | CBS 139.67 | DSM 43833 | NBRC 14880
Genus XIII. Thermocrispum VP
Thermocrispum municipale VP (T) Korn-Wendisch et al. 1995 MKD35
| ATCC 51796 | DSM 44069, X79184, Th.munici2 | NBRC 15806 |
NCIMB 13403
Thermocrispum agreste VP Korn-Wendisch et al. 1995 CHB77 | ATCC
51797 | DSM 44070, X79183, Th.agreste | NBRC 15805 | NCIMB
13402
Family II. Actinosynnemataceae VP
Genus I. Actinosynnema AL (T)
Actinosynnema mirum AL (T) Hasegawa et al. 1978 101 | ATCC 29888 | DSM
43827, X84447, Asy.mirum | IAM 14280 | NBRC 14064, D85475,
Asy.mirum2 | IMET 9740 | IMRU 3971 | JCM 3225 | KCC A-0225
Actinosynnema pretiosum subsp. pretiosum VP Hasegawa et al. 1983
C-15003 (N-1) | RCTI C-15003 (N-1) | ATCC 31281 | DSM 44132 |
FERM-P 3992 | JCM 7344 | NBRC 13726 | NRRL B-16060, AF114800
Actinosynnema pretiosum subsp. auranticum VP Hasegawa et al. 1983
C-14482 (N-1001) | RTCI C-14482 | ATCC 31309 | DSM 44131
| FERM-P 4130 | JCM 7343, AB122775 | NBRC 13725 | NRRL
B-16078
Genus II. Actinokineospora VP
Actinokineospora riparia VP (T) Hasegawa 1988 C-39162 | ATCC 27300 |
CCRC 13450 | DSM 44259 | NBRC 14541, X76953, Ack.ripari | JCM
7471 | MTCC 2712 | NCIMB 13255 | NRRL B-16432
250
Actinokineospora auranticolor VP Otoguro et al. 2003 YU 961-1 | DSM

44650 | NBRC 16518
Actinokineospora diospyrosa VP Tamura et al. 1995 YU8-1 | DSM 44255 |
JCM 9921 | KCTC 9569 | MTCC 2687 | NBRC 15665 | NRRL B-24047
, AF114797
Actinokineospora enzanensis VP Otoguro et al. 2003 YU 924-101 | DSM
44649 | NBRC 16517
Actinokineospora globicatena VP Tamura et al. 1995 YU6-1 | DSM 44256
| NBRC 15664 | JCM 9922 | KCTC 9570 | MTCC 2686
Actinokineospora inagensis VP Tamura et al. 1995 YU4-1 | DSM 44258 |

NBRC 15663 | JCM 9923 | KCTC 9571 | MTCC 2685 | NRRL B-24048
, AF114798
Actinokineospora terrae VP Tamura et al. 1995 YU6-3 | DSM 44260 | NBRC
15668, AB058394, | JCM 9924 | KCTC 9572 | MTCC 2688
Genus III. Lechevalieria VP
Lechevalieria aerocolonigenes VP (T) (Labeda 1986) Labeda et al. 2001
<- Saccharothrix aerocolonigenes (basonym) Shinobu N 701 |
96CJ10356 | ATCC 23870 | CBS 609.68 | CCRC 13661 | DSM 40034 |
NBRC 3837 | NBRC 13195 | IMET 7515 | ISP 5034, AB020030 | JCM
4150 | NRRL B-3298, AF114804 | RIA 1108
Lechevalieria ?ava VP (Gauze et al. 1974) Labeda et al. 2001 <- Saccha-
rothrix ?ava (basonym) ATCC 29533 | CCRC 13328 | DSM 43885
| NBRC 14521 | INA 2171 | JCM 3296 | KCC A-0296 | NCIB 11447 |
NRRL B-16131, AF114808

Genus IV. Lentzea VP
Lentzea albidocapillata VP (T) Yassin et al. 1995 -> Saccarothrix albido-
capillata DSM 44073 | NBRC 15855 | IMMIB D-958, X84321, Lz.al-
bicap | JCM 9732
Lentzea albida VP Labeda et al. 2001 DSM 43393 | NBRC 16102,
AB006176 | NRRL B-24073
Lentzea californiensis VP Labeda et al. 2001 DSM 43393 | IMRU 550 |
NRRL B-16137, AF174435
Lentzea ?aviverrucosa VP Xie et al. 2002 AS 4.0578, AF183957 | JCM
11373
Lentzea violacea VP (Lee et al. 2000) Labeda et al. 2001 456 <- Saccharothrix
violacea (basonym) LM 036, AJ242633 | IMNSU 50388
Lentzea waywayandensis VP (Labeda and Lyons 1989) Labeda et al. 2001
<- Saccharothrix waywayandensis (basonym) LL-37Z-15 | ATCC
51594 | DSM 44232 | NBRC 14970 | JCM 9114, AB020029 | NCIMB
13164 | NRRL B-16159, AF114813, AF114813
Genus V. Saccharothrix VP
Saccharothrix australiensis VP (T) Labeda et al. 1984 LL-BM782Ce82 |
ATCC 31497, M29282, Sct.austr2 | DSM 43800 | IAM 14291 | NBRC
14444 | JCM 3370 | NCIMB 13188 | NRRL 11239
Saccharothrix albidocapillata (Yassin et al. 1995) Lee et al. 2000 <-
Lentzia albidocapillata (basonym) LM 044, AJ242634 | DSM 44073
| IMMIB D-958
Saccharothrix aerocolonigenes subsp. aerocolonigenes VP Labeda 1986

-> Lechevalieria aerocolonigenes Shinobu N 701 | ATCC 23870 | CBS
609.68 | DSM 40034 | NBRC 13195 | NBRC 3837 | IMET 7515 | ISP
5034, AB020030 | NRRL B-3298, AF114804 | RIA 1108
Saccharothrix aerocolonigenes subsp. staurosporea VP Takahashi et al.
1996 AM-2282 | JCM 9734, AB024287 | NRRL 11184
45 6
251
Saccharothrix coeruleofusca VP (Preobrazhenskaya and Sveshnikova 1974)

Grund and Kroppenstedt 1990 <- Nocardiopsis coeruleofusca (ba-
sonym) ATCC 35108 | DSM 43679, X76963, Sct.coerul | IMET 9602
| INA 1335
Saccharothrix coeruleoviolacea VP (Preobrazhenskaya et al. 1987) Krop-

penstedt et al. 1991 <- Actinomadura coeruleoviolacea (basonym)
DSM 43935 | INA 3564 | VKM Ac 1083
Saccharothrix cryophilis VP Labeda and Lechevalier 1989 -> Crossiella
cryophila TS-1980 | ATCC 51143, AF114806 | DSM 44230 | NBRC
14475 | JCM 9111 | NCIMB 13187 | NRRL B-16238, AF114807
Saccharothrix espanaensis VP Labeda and Lechevalier 1989 LL-C19004-
NS29 | ATCC 51144 | DSM 44229 | NBRC 15066 | JCM 9112 | NRRL
15764, AF114807
Saccharothrix ?ava VP (Gauze et al. 1974) Grund and Kroppenstedt 1990
<- Nocardiopsis ?ava (basonym) -> Lechevalieria ?ava ATCC
29533 | DSM 43885 | INA 2171 | JCM 3296 | KCC A-0296 | NCIB
11447 | NRRL B-16131, AF114808
Saccharothrix longispora VP (Preobrazhenskaya and Sveshnikova 1974)
Grund and Kroppenstedt 1990 <- Nocardiopsis longispora (basonym)
ATCC 35109 | DSM 43749, X76964, Sct.longis | IMET 9603 | INA
10222
Saccharothrix mutabilis subsp. mutabilis VP (Shearer et al. 1983) Labeda
and Lechevalier 1989 <- Nocardiopsis mutabilis (basonym) AAA-
0025 | ATCC 31520 | DSM 43853, X76966, Sct.mutabm | NBRC 14310
| JCM 3380 | NRRL B-16077 | SKF-AAA025
Saccharothrix mutabilis subsp. capreolus VP Grund and Kroppenstedt 1990

M48-E 2655 | ATCC 23892 | CBS 678.68 | DSM 40225, X76965,
Sct.mutabc | NBRC 12847 | ISP 5225 | NRRL 2773 | RIA 1167

Saccharothrix syringae VP (Gauze et al. 1985) Grund and Kroppenstedt
1990 <- Nocardiopsis syringae (basonym) ATCC 51364 | DSM 43886
| NBRC 14523 | IMET 9675 | INA 2240 | JCM 6844 | NRRL B-16468,
AF114812
Saccharothrix tangerinus VP Kinoshita et al. 2000 MK27-91F2,
AB020031 | FERM P-16053 | NBRC 16184 | JCM 10302
Saccharothrix texasensis VP Labeda and Lyons 1989 LL-37U-77 | ATCC
51593 | DSM 44231 | NBRC 14971 | JCM 9113 | NCIMB 13186 | NRRL
B-16134, AF114814
Saccharothrix violacea VP Lee et al. 2000 -> Lentzea violacea LM 036,
AJ242633 | IMSNU 50388
Saccharothrix waywayandensis VP Labeda and Lyons 1989 -> Lentzea
waywayandensis LL-37Z-15 | ATCC 51594 | DSM 44232 | NBRC
14970 | JCM 9114, AB020029 | NCIMB 13164 | NRRL B-16159,
AF114813
Suborder XIV. Streptomycineae VP
Family I. Streptomycetaceae AL
Genus I. Streptomyces AL (T)
Streptomyces albus subsp. albus AL (T) (Rossi Doria 1891) Waksman and
Henrici 1943 ATCC 25426 | ATCC 3004 | CBS 924.69 | DSM 40313,
AJ621602, X53163, Stm.albus | NBRC 13014 | IMET 40241 | ISP 5313
| NRRL B-1811 | RIA 12C6
Streptomyces albus subsp. pathocidicus AL Nagatsu et al. 1962 BK-513 |

ATCC 14510 | DSM 40799 | JCM 4166 | KCC S-0166
Streptomyces abikoensis VP (Umezawa et al. 1951) Witt and Stackebrandt
1991 <- Streptoverticillium abikoense (basonym) AS-803 | ATCC
252
12766 | CBS 487.62 | DSM 40831, X53168, Stm.abikon | NRRL

B-1518 | RIA 497
Streptomyces aburaviensis AL Nishimura et al. 1957 SRL S-66 | ATCC
23869 | CBS 608.68 | DSM 40033 | NBRC 12830 | IMET 43031 | ISP
5033 | JCM 4170 | KCC S-0170 | NRRL B-2218 | RIA 1107
Streptomyces achromogenes subsp. achromogenes AL Okami and Umezawa
1953 Z-4-1 | ATCC 12767 | ATCC 19719 | CBS 458.68 | DSM 40028 |
NBRC 12735 | IMET 43080 | ISP 5028 | JCM 4121 | RIA 1000
Streptomyces achromogenes subsp. rubradiris AL Bhuyan et al. 1965 CBS
566.70 | DSM 40789 | JCM 4955 | NRRL 3061
Streptomyces acidiscabies VP Lambert and Loria 1989 RL-110 | ATCC
49003, D63865, Stm.acidsc | DSM 41668 | ICMP 12536 | JCM 7913
Streptomyces acrimycini AL (Preobrazhenskaya et al. 1957) Pridham et
al. 1958 ATCC 19720 | ATCC 19885 | CBS 459.68 | DSM 40135 |
ETH 24207 | NBRC 12736 | INA 7699 | ISP 5135 | KCC S-0339 | NRRL
B-2565 | RIA 1001
Streptomyces aculeolatus VP Shomura et al. 1988 SF2415 | JCM 6055
Streptomyces afghaniensis AL Shimo et al. 1959 772 | ATCC 23871 | CBS
610.68 | DSM 40228 | NBRC 12831 | IMET 42942 | ISP 5228, AJ399483
| JCM 4340 | RIA 1169
Streptomyces alanosinicus AL Thiemann and Beretta 1966 V/119 | ATCC

15710 | CBS 348.69 | CBS 794.72 | DSM 40606 | NBRC 13493 | ISP 5606
| RIA 1454
Streptomyces albaduncus AL Tsukiura et al. 1964 ATCC 14698 | CBS

698.72 | DSM 40478 | NBRC 13397 | ISP 5478 | JCM 4715 | KCC
S-0715 | RIA 1358
Streptomyces albiaxialis VP Kuznetsov et al. 1993 VKM A-691
Streptomyces albidochromogenes VP Preobrazhenskaya 1986 INA 11792
Streptomyces albido?avus AL (Rossi Doria 1891) Waksman and Henrici
1948 ATCC 25422 | CBS 416.34 | CBS 920.69 | DSM 40455, Z76676,
Stm.alb?v | ICMP 12537 | NBRC 13010 | ISP 5455 | JCM 4446 | NRRL
B-1271 | RIA 1202
Streptomyces albireticuli VP (Nakazawa 1955) Witt and Stackebrandt 1991
<- Streptoverticillium albireticuli (basonym) ATCC 19721 | CBS
460.68 | DSM 40051 | NBRC 12737 | ISP 5051 | JCM 4116 | RIA 1002
Streptomyces albofaciens AL Thirumalachar and Bhatt 1960 27-A | ATCC
23873 | ATCC 25184 | CBS 612.68 | DSM 40268 | NBRC 12833 | IMET
43518 | ISP 5268 | JCM 4342, AB045880 | RIA 1189
Streptomyces albo?avus AL (Waksman and Curtis 1916) Waksman and
Henrici 1948 ATCC 12626 | ATCC 23874 | CBS 613.68 | DSM 40045
| NBRC 13196 | IMET 42936 | IMRU 3008 | ISP 5045 | RIA 1112
Streptomyces albogriseolus AL Benedict et al. 1954 ATCC 23875 | CBS

614.68 | DSM 40003 | NBRC 12834 | ISP 5003 | JCM 4004 | JCM 4616 |
NRRL B-1305, AJ494865 | RIA 1101
Streptomyces albolongus AL Tsukiura et al. 1964 304 R7 | ATCC 27414 |
CBS 766.72 | DSM 40570 | NBRC 13465 | ISP 5570 | JCM 4716 | RIA
1426
Streptomyces alboniger AL Porter et al. 1952 P-638 | ATCC 12461 | ATCC
5043 | RIA 1003
Streptomyces albospinus AL Wang et al. 1966 M750-G1 | ATCC 29808 |
DSM 41674 | NBRC 13846 | JCM 3399
Streptomyces albosporeus subsp. albosporeus AL (Krainsky 1914) Waks-
man and Henrici 1948 = Streptomyces aurantiacus (senior heterotypic
253
synonym) ATCC 15394 | CCM 3157 | DSM 40795 | NRRL B-2372 |

RIA 482
Streptomyces albosporeus subsp. labilomyceticus AL Okami et al. 1963
A955-Y3 | DSM 41672 | JCM 3383 | NIHJ 425 457
Streptomyces alboverticillatus VP (Locci and Scho?eld 1989) Witt and
Stackebrandt 1991 <- Streptoverticillium alboverticillatum (ba-
sonym) 1101-A5 | IMC S-0603 | ATCC 29818 | DSM 41500 | DSM
41678 | NBRC 13861 | IPV 2254 | JCM 5010 | KCC S-1010
Streptomyces albovinaceus AL (Kudrina 1957) Pridham et al. 1958 ATCC
15823 | CBS 256.66 | CBS 462.68 | DSM 40136 | NBRC 12739 | INA
273/53 | ISP 5136 | JCM 4343 | KCC S-0343 | RIA 1004
Streptomyces alboviridis AL (Duche 1934) Pridham et al. 1958 BS 923.69
| LCP 68 | ATCC 25425 | DSM 40326 | NBRC 13013 | ISP 5326 | NRRL
B-3633 | RIA 1205

Streptomyces albulus AL Routien 1969 BA 4105 | ATCC 12757 | CBS 711.72
| DSM 40492 | NBRC 13410 | ISP 5492, AB024440 | RIA 1371
Streptomyces almquistii AL (Duche 1934) Pridham et al. 1958 ATCC 25427

| ATCC 618 | CBS 925.69 | DSM 40447 | NBRC 13015 | IMET 43380 |
ISP 5447 | KCC S-0451 | RIA 1207

Streptomyces althioticus AL Yamaguchi et al. 1957 245-22 | ATCC 19724 |
CBS 463.68 | DSM 40092 | NBRC 12740 | ISP 5092 | RIA 1005
Streptomyces amakusaensis AL Nagatsu et al. 1963 IPCR 10-101 | ATCC
23876 | CBS 615.68 | DSM 40219 | NBRC 12835 | ISP 5219 | JCM 4167
| JCM 4617 | RIA 1163
Streptomyces ambofaciens AL Pinnert-Sindico 1954 3486 | ATCC 23877,

M27245, Stm.ambofa | CBS 616.68 | DSM 40053 | NBRC 12836 | ISP
5053 | JCM 4204 | RIA 1115
Streptomyces aminophilus AL Foster 1961 = Streptomyces cacaoi subsp. ca-
caoi (senior heterotypic synonym) ATCC 14961 | ATCC 23878 | CBS
617.68 | DSM 40186 | NBRC 12837 | ISP 5186 | NRRL 2390 | RIA 1140
Streptomyces anandii AL Batra and Bajaj 1965 ITCC 1233 | ATCC 19388
| CBS 739.72 | DSM 40535 | NBRC 13438 | ISP 5535 | JCM 4720 | RIA
1399
Streptomyces anthocyanicus AL (Krassilnikov et al. 1965) Pridham 1970
69 | ATCC 19821 | DSM 41422 | INMI 69 | NRRL B-12341
Streptomyces antibioticus AL (Waksman and Woodruff 1941) Waksman and
Henrici 1948 ATCC 23879 | ATCC 8663 | CBS 659.68 | DSM 40234 |
NBRC 12838 | IMET 40227 | IMRU 3435 | ISP 5234 | RIA 1174
Streptomyces antimycoticus AL Waksman 1957 ATCC 23880 | CBS 660.68
| DSM 40284 | NBRC 12839 | ISP 5284 | JCM 4228 | NRRL 2421 | RIA
1198
Streptomyces anulatus AL (Beijerinck 1912) Waksman 1953 ATCC 27416
| CBS 100.18 | CBS 670.72 | DSM 40361 | NBRC 13369 | IMET 43334 |
ISP 5361 | JCM 4721 | KCC S-0721 | RIA 1330

Streptomyces arabicus AL Shibata et al. 1957 ATCC 23881 | CBS 661.68 |
DSM 40252 | NBRC 12840 | ISP 5252 | NRRL B-1733 | RIA 1178
Streptomyces ardus VP (De Boer et al. 1961) Witt and Stackebrandt 1991 <-
Streptoverticillium ardum (basonym) UC 2500 | ATCC 27417 | CBS
NRRL 2817 | RIA 1391
45 7
Rule 37a (1 ) state s tha t the nam e of a ta xon must be c hang ed if t he nom enc la tural t ype o f the tax on is e xc lu ded. The s tatus of S tre p-
tom yces albosporeu s subsp. labilom yceticu s is u nclear fo llowin g the com bination of Strept omy ce s a lbo spo re us sub sp . a lbo sp oreus with
S tre ptom yces aurantiacus
254
Streptomyces arenae AL Pridham et al. 1958 NA 269-M2 | ATCC 25428

| CBS 926.69 | DSM 40293 | NBRC 13016 | ISP 5293, AJ399485,
AJ399485 | NRRL 2377 | RIA 1208

Streptomyces argenteolus AL Tresner et al. 1961 MD 2428 | ATCC 11009 |
ATCC 23882 | CBS 662.68 | DSM 40226 | ETH 24234 | NBRC 12841
| IMET 43659 | ISP 5226 | JCM 4623, AB045872, AB045872 | KCC
S-0229 | KCC S-0623 | NIHJ 501 | RIA 1168

Streptomyces armeniacus VP (Kalakoutskii and Kuznetsov 1964) Welling-
ton and Williams 1981 <- Actinoplanes armeniacus (basonym)
ATCC 15676 | DSM 43125 | DSM 43125 | ETH 32694 | IMET 9250 |
JCM 3070, AB018092, Stm.armen1 | JCM 3070, AB018093, Stm.ar-
men2 | JCM 3070, AB018094, Stm.armen3 | LBG A 3125 | RIA 26A-32
| RIA 807
Streptomyces asiaticus VP Sembiring et al. 2001 A14P1, AJ391830 | DSM

41761 | NCIMB 13675
Streptomyces asterosporus VP Preobrazhenskaya 1986 DSM 41452 | INMI
16 | JCM 6912 | VKM Ac-40
Streptomyces atratus AL Shibata et al. 1962 Nakazawa 46408 | ATCC 14046
| DSM 41673 | NBRC 3897 | JCM 3386
Streptomyces atroaurantiacus VP Nakagaito et al. 1993 K55-G-32 | ATCC

51343 | DSM 41649 | NBRC 14327 | JCM 3337
Streptomyces atroolivaceus AL (Preobrazhenskaya et al. 1957) Pridham et
al. 1958 ATCC 19725 | CBS 464.68 | DSM 40137 | NBRC 12741 |
IMET 43088 | INA 4776/54 | ISP 5137 | RIA 1006
Streptomyces atrovirens VP Preobrazhenskaya and Terekhova 1986 DSM
41467 | INA 1551 | JCM 6913
Streptomyces aurantiacus AL (Rossi Doria 1891) Waksman 1953 emend.
Lanoot et al. 2002 = Streptomyces albosporeus subsp. albosporeus
(junior heterotypic synonym) ATCC 19822 | ATCC 25429 | CBS
927.69 | DSM 40412 | NBRC 13017 | INMI 1373 | ISP 5412 | RIA 1209
Streptomyces aurantiogriseus AL (Preobrazhenskaya 1957) Pridham et al.
1958 ATCC 19887 | CBS 663.68 | DSM 40138 | NBRC 12842 | INA
10369/58 | ISP 5138 | RIA 1130
Streptomyces aureocirculatus AL (Krassilnikov and Yuan 1965) Pridham
1970 ATCC 15851 | ATCC 19823 | ATCC 25430 | CBS 928.69 | DSM
40386 | NBRC 13018 | INMI 735 | ISP 5386 | RIA 1210 | RIA 682
Streptomyces aureofaciens AL Duggar 1948 A-377 | ATCC 10762 | ATCC
23884 | CBS 664.68 | DSM 40127 | ICMP 499 | NBRC 12594 | NBRC
12843 | IMET 43577, AY289116 | ISP 5127 | JCM 4008 | LMG 5968 |
NRRL 2209, Y15504, Stm.aureof | RIA 1129
Streptomyces aureorectus VP Taig and Solovieva 1986 2843-10 | DSM
41692 | NBRC 15896 | INA A-78 | RIA 553 | VKM Ac-1828
Streptomyces aureoversilis VP (Locci et al. 1969) Witt and Stackebrandt
1991 <- Streptoverticillium aureoversile (basonym) ATCC 15853 |
ATCC 25433 | CBS 664.69 | DSM 40387 | NBRC 13021 | ISP 5387 | JCM
4457 | KCC S-0457 | RIA 1213 | RIA 681
Streptomyces aureoverticillatus AL (Krassilnikov and Yuan 1960) Pridham
1970 ATCC 15854 | CBS 465.68 | DSM 40080 | NBRC 12742 | INMI-
1077 | ISP 5080 | RIA 1007 | RIA 679
Streptomyces avellaneus AL Baldacci and Grein 1966 2758 FI | ATCC 23730
| CBS 752.72 | DSM 40554 | NBRC 13451 | IMRU 3911 | IPV 1830 | ISP
5554 | JCM 4321 | NRRL B-3447 | RIA 1412

Streptomyces avermectinius VP Takahashi et al. 2002 = Streptomyces aver-
mitilis (senior homotypic synonym) MA-4680, AB078897 | ATCC
31267 | NRRL 8165
255
Streptomyces avermitilis VP Kim and Goodfellow 2002 = Streptomyces

avermectinius (junior homotypic synonym) MA-4680 | ATCC 31267
| NCIMB 12804, AF145223 | NRRL 8165
Streptomyces avidinii AL Stapley et al. 1964 MA-833 | ATCC 27419 | CBS

730.72 | DSM 40526 | NBRC 13429 | IMET 43538 | ISP 5526 | NRRL
3077 | RIA 1390
Streptomyces azaticus VP Nakagaito et al. 1993 -> Kitasatospora azatica
OS-3256 | ATCC 51237 | DSM 41650 | NBRC 13803, U93312
Streptomyces azureus AL Kelly et al. 1959 SC-2364 | ATCC 14921 | CBS

467.68 | DSM 40106 | NBRC 12744 | IMET 43765 | ISP 5106 | JCM 4217
| JCM 4564 | RIA 1009
Streptomyces baarnensis AL Pridham et al. 1958 Dreyfus 472 | ATCC 23885

| CBS 306.55 | CBS 665.68 | DSM 40232 | NBRC 13197 | IMET 43091 |
ISP 5232 | RIA 1172

Streptomyces bacillaris AL (Krassilnikov 1958) Pridham 1970 ATCC
15855 | CBS 788.72 | DSM 40598 | NBRC 13487 | INMI 445 | ISP 5598
| RIA 1448 | RIA 336
Streptomyces badius AL (Kudrina 1957) Pridham et al. 1958 1203/53 |

ATCC 19729 | ATCC 19888 | CBS 468.68 | DSM 40139 | NBRC 12745
| IMET 43089 | ISP 5139 | RIA 1010
Streptomyces baldaccii VP (Farina and Locci 1966) Witt and Stackebrandt

1991 = Streptomyces roseoverticillatus (senior heterotypic synonym)
<- Streptoverticillium baldaccii (basonym) ATCC 23654 | DPDU
0819, X53164, Stm.rosver
Streptomyces bambergiensis AL Wallhusser et al. 1966 3263 | ATCC 13879
1440
Streptomyces beijiangensis VP Li et al. 2002 AS 4.1718 | CCTCC 99005 |
DSM 41794 | YIM6, AF385681
Streptomyces bellus AL Margalith and Beretta 1960 A/870 | ATCC 14925 |
ATCC 23886 | CBS 666.68 | DSM 40185 | NBRC 12844 | IMET 42062 |
JCM 4292 | JCM 4625 | RIA 1139
Streptomyces bikiniensis AL Johnstone and Waksman 1947 ATCC 11062 |
DSM 40581, X79851, Stm.bikini | ETH 14303 | IMET 41362 | IMRU
3514 | ISP 5581 | JCM 4011 | NRRL B-1049
Streptomyces biverticillatus VP (Preobrazhenskaya 1957) Witt and Stacke-
brandt 1991 = Streptomyces roseoverticillatus (senior heterotypic
synonym) <- Streptoverticillium biverticillatum (basonym) ATCC
23615 | ATCC 23888 | CBS 668.68 | DSM 40272 | NBRC 12845 | INA
10204/54 | ISP 5272 | RIA 1190
Streptomyces blastmyceticus VP (Watanabe et al. 1957) Witt and Stacke-
brandt 1991 <- Streptoverticillium blastmyceticum (basonym) 445
D1 | ATCC 19731 | CBS 470.68 | DSM 40029 | NBRC 12747 | ISP 5029
| RIA 1012
Streptomyces bluensis AL Mason et al. 1963 U-12898 | ATCC 27420 | CBS

761.72 | DSM 40564 | NBRC 13460 | ISP 5564, X79324, Stm.bluens |
NRRL 2876 | RIA 1421
Streptomyces bobili AL (Waksman and Curtis 1916) Waksman and Henrici
1948 ATCC 23889 | ATCC 3310 | CBS 675.68 | DSM 40056 | NBRC
13199 | IMET 41372 | IMRU 3310 | ISP 5056 | RIA 1116
Streptomyces bottropensis AL Waksman 1961 B-35 | ATCC 25435, D63868,
Stm.bottre | CBS 163.64 | CBS 667.69 | DSM 40262 | ETH 23899 | NBRC
13023 | ISP 5262 | JCM 4459 | RIA 1215
Streptomyces brasiliensis VP (Falcao de Morais et al. 1966) Goodfellow
et al. 1986 <- Elytrosporangium brasiliense (basonym) CCIB 71
256
| ATCC 23727 | CUB 126 | DSM 43159, X53162, Stm.brasil | NBRC

12596 | IMET 43493 | IMUR 2572 | JCM 3086 | KCC 30 | KCC A-0086 |
RIA 911
Streptomyces bungoensis VP Eguchi et al. 1993 MS16-10G | FERM 8432
Streptomyces cacaoi subsp. cacaoi AL (Waksman 1932) Waksman and
Henrici 1948 emend. Lanoot et al. 2002 = Streptomyces aminophilus
(junior heterotypic synonym) ATCC 19732 | ATCC 3082 | CBS
471.68 | DSM 40057 | NBRC 12748 | IMET 40260 | IMRU 3082 | ISP
5057 | RIA 1013
Streptomyces cacaoi subsp. asoensis AL Isono et al. 1965 20-60 | ATCC
19093 | CBS 378.69 | DSM 41440 | NBRC 13813 | JCM 4185 | KCC
S-0185 | NCIB 12769 | NRRL B-16592
Streptomyces caelestis AL De Boer et al. 1955 UC 2011 | ATCC 14924 |
ISP 5084 | NRRL 2418, X80824, Stm.caeles | RIA 1014
Streptomyces caeruleus AL (Baldacci 1944) Pridham et al. 1958 ATCC
27421 | CBS 645.72 | DSM 40103 | NBRC 13344 | IMET 40622 | IPV
930 | ISP 5103 | RIA 1305
Streptomyces californicus AL (Waksman and Curtis 1916) Waksman and
Henrici 1948 ATCC 11896 | ATCC 19734 | ATCC 3312 | CBS 473.68
| DSM 40058 | ETH 10212 | NBRC 12750 | NBRC 3386 | IMET 40261 |
IMRU 3312 | IMRU 3313 | ISP 5058 | KCC S-0015 | KCC S-0567 | NRRL
B-2285 | RIA 1015 | RIA 63
Streptomyces calvus AL Backus et al. 1957 T-3018 | ATCC 13382 | ATCC
| JCM 4628 | RIA 1103
Streptomyces canarius AL Vavra and Dietz 1965 UC 2591 | ATCC 27423

| CBS 732.72 | DSM 40528 | NBRC 13431 | IMET 43539 | ISP 5528 |
NRRL 2976 | RIA 1392

Streptomyces candidus VP Sveshnikova 1986 ATCC 19735 | ATCC 19891
| ATCC 23981 | CBS 677.68 | DSM 4014 | NBRC 12846 | INA 5855/54 |
ISP 5141 | RIA 1131

Streptomyces canescens AL Waksman 1957 8110 | SC 3069 | ATCC 19736 |
CBS 474.68 | DSM 40001, Z76684, Stm.canesc | DSM 41156 | NBRC
12751 | IMET 43077 | IMRU 3782 | ISP 5001 | JCM 4196 | JCM 4568 |
KCC S-0196 | KCC S-0568 | NRRL 2419 | RIA 1016
Streptomyces cangkringensis VP Sembiring et al. 2001 D13P3, AJ391831
| DSM 41769 | NCIMB 13684
Streptomyces caniferus VP Preobrazhenskaya 1986 ATCC 43699 | DSM

41453 | INMI 377 | JCM 6914 | VKM 68
Streptomyces canus AL Heinemann et al. 1953 456786 | ATCC 12237 | CBS
475.68 | DSM 40017 | NBRC 12752 | ISP 5017 | RIA 1017
Streptomyces capillispiralis VP Mertz and Higgins 1982 A49492 | MS 1486
| DSM 41695 | NBRC 14222 | JCM 5075 | KCC S-1075 | NCIMB 12832
| NRRL 12279
Streptomyces capoamus AL Goncalves de Lima et al. 1964 IAUR 3122

| ATCC 19006 | CBS 712.72 | DSM 40494 | NBRC 13411 | ISP 5494 |
JCM 4253 | JCM 4734 | RIA 1372

Streptomyces carpaticus VP Maksimova and Terekhova 1986 ATCC 43678
| DSM 41468 | INA 8851 | JCM 6915
Streptomyces carpinensis VP (Falcao de Morais et al. 1971) Goodfellow et

al. 1986 <- Elytrosporangium carpinense (basonym) 70-6-2 | ATCC
27116 | DSM 43835 | NBRC 14214 | IMET 43558 | JCM 3301 | KCC
3301 | NRRL B-16921 | RIA 982 | VKM Ac-1300 | VKM Ac-657
257
Streptomyces catenulae AL Davisson and Finlay 1961 6563 | ATCC 12476

| ATCC 23893 | CBS 679.68 | DSM 40258, AJ621613 | NBRC 12848 |
IMET 42944 | ISP 5258 | RIA 1183

Streptomyces caviscabies VP Goyer et al. 1996 EF-87 | ATCC 51928,
AF112160
Streptomyces cavourensis subsp. cavourensis AL Skarbek and Brady 1978
829 | ATCC 14889 | CBS 669.69 | DSM 40300 | NBRC 13026 | ISP 5300
| JCM 4249 | NCIB 8918 | RIA 1218
Streptomyces cavourensis subsp. washingtonensis AL Skarbek and Brady

1978 ATCC 27732 | DSM 41423 | JCM 4967 | KCC S-0967 | NRRL
B-8030
Streptomyces cellostaticus AL Hamada 1958 E-150 | ATCC 23894 | CBS
680.68 | DSM 40189 | NBRC 12849 | IMET 42066 | ISP 5189 | RIA 1143
Streptomyces cellulo?avus AL Nishimura et al. 1953 ATCC 29806 | DSM
40839 | ETH 24125 | NBRC 13780 | KCC S-0126 | NIHJ 198 | NRRL
B-2493
Streptomyces cellulolyticus VP Li 1997 AS. 41332 | LX
Streptomyces cellulosae AL (Krainsky 1914) Waksman and Henrici 1948
ATCC 25439 | CBS 122.18 | CBS 670.69 | DSM 40362 | NBRC 13027 |
ISP 5362 | RIA 1219
Streptomyces champavatii AL Uma and Narasimha Rao 1959 DSM 40841
| JCM 5066 | NRRL B-5682
Streptomyces chartreusis AL Leach et al. 1953 UC 2012 | ATCC 14922

| ATCC 19738 | CBS 476.68 | DSM 40085 | NBRC 12753 | ISP 5085,
AJ399468, AJ399468 | JCM 4570 | NRRL 2287 | RIA 1018

Streptomyces chattanoogensis AL Burns and Holtman 1959 ATCC 13358
| ATCC 19739 | CBS 477.68 | DSM 40002, AJ621611 | NBRC 12754 |
ISP 50002 | J-23 | JCM 4299 | JCM 4571 | RIA 1019

Streptomyces chibaensis AL Suzuki et al. 1958 77-SN-2 | ATCC 23895 |
Streptomyces chrestomyceticus AL Canevazzi and Scotti 1959 ATCC 14947
| CBS 745.72 | DSM 40545, AJ621609 | DSM 40820 | NBRC 13444 |
IMRU 3835 | ISP 5545 | NCIB 8995 | RIA 1405

Streptomyces chromofuscus AL (Preobrazhenskaya et al. 1957) Pridham et
al. 1958 13638/58 | ATCC 23896 | CBS 682.68 | DSM 40273 | NBRC
12851 | ISP 5273 | RIA 1191
Streptomyces chryseus AL (Krassilnikov et al. 1965) Pridham 1970 ATCC
19829 | CBS 678.72 | DSM 40420 | NBRC 13377 | INMI 1007 B | ISP
5420 | RIA 1338
Streptomyces chrysomallus subsp. chrysomallus AL Lindenbein 1952
Schn 192 | ATCC 11523 | ATCC 23209 | CBS 478.68 | DSM 40128
| ETH 12398 | NBRC 12755 | IMET 41360 | IMRU 3657 | ISP 5128 |
KCC S-0355 | NRRL 2250 | RIA 1020

Streptomyces chrysomallus subsp. fumigatus AL Frommer 1959 DSM
41424 | JCM 3371 | NRRL B-2289
Streptomyces cinereorectus VP Terekhova and Preobrazhenskaya 1986
ATCC 43679 | DSM 41469 | INA 5202 | JCM 6916
Streptomyces cinereoruber subsp. cinereoruber AL Corbaz et al. 1957
PSAM 192 | ATCC 19740 | CBS 479.68 | DSM 40012 | DSM 41512 | ETH
7451 | NBRC 12756 | ISP 5012 | JCM 4205 | JCM 4572 | KCC S-0205 |
KCC S-0572 | RIA 1021
Streptomyces cinereoruber subsp. fructofermentans AL Corbaz et al. 1957
DSM 40692 | ETH 6143 | JCM 4956 | NRRL 2588
Streptomyces cinereospinus VP Terekhova et al. 1986 ATCC 43680 | DSM
41470 | INA 1719 | JCM 6917
258
Streptomyces cinereus VP (Cross et al. 1963) Goodfellow et al. 1986 <-

Microellobosporia cinerea (basonym) ATCC 15840 | CBS 356.67 |
CUB 301 | DSM 43033 | NBRC 12477 | IMET 43557 | IMRU 3855 | JCM
3040 | KCC 3040 | NCIB 9586 | RIA 810
Streptomyces cinerochromogenes AL Miyairi et al. 1966 Fuji 50 | ATCC
33339 | DSM 41651 | NBRC 13922 | JCM 3385 | NRRL B-16928
Streptomyces cinnabarinus AL (Ryabova and Preobrazhenskaya 1957) Prid-
ham et al. 1958 ATCC 23617 | CBS 671.69 | DSM 40467 | NBRC
13028 | INA 1242 | ISP 5467, AJ399487 | RIA 1220
Streptomyces cinnamonensis AL Okami 1952 AH-304 | ATCC 12308 | CBS
411.63 | DSM 40803 | NBRC 3414 | NRRL B-1588
Streptomyces cinnamoneus subsp. cinnamoneus VP (Benedict et al. 1952)
Witt and Stackebrandt 1991 <- Streptoverticillium cinnamoneum
subsp. cinnamoneum (basonym) A-725 | ATCC 11874 | ATCC 23897
| CBS 293.64 | CBS 683.68 | DSM 40005 | DSM 41431 | ETH 13 355
| NBRC 12852 | IMRU 3664 | IPV 1776 | IPV 2013 | IPV 936 | ISP
5005, X53171, Stm.cincin | JCM 4152 | JCM 4633 | KCC S-0152 | KCC
S-0633 | NCIB 8851 | NRRL B-1285 | RIA 1102 | RIA 360
Streptomyces cinnamoneus subsp. albosporus VP (Thirumalachar 1968)
Witt and Stackebrandt <- Streptoverticillium cinnamoneum subsp.
albosporum (basonym) HA-145 | ATCC 25186 | DSM 40897 | IPV
2066
Streptomyces cinnamoneus subsp. lanosus VP (Thirumalachar 1968) Witt
and Stackebrandt 1991 <- Streptoverticillium cinnamoneum subsp.
lanosum (basonym) HA-176 | ATCC 25187 | DSM 40898 | IPV 2067
Streptomyces cinnamoneus subsp. sparsus VP (Thirumalachar 1968) Witt
and Stackebrandt 1991 <- Streptoverticillium cinnamoneum subsp.
sparsum (basonym) HA-106 | ATCC 25185 | DSM 40899 | IPV 2068
Streptomyces cirratus AL Koshiyama et al. 1963 ATCC 14699 | CBS 699.72
| DSM 40479 | NBRC 13398 | ISP 5479 | JCM 4738 | RIA 1359
Streptomyces ciscaucasicus VP Sveshnikova 1986 ATCC 23626 | ATCC

23918 | CBS 839.68 | DSM 40275, AY508512 | NBRC 12872 | IMET
42945 | INA 2022/55 | ISP 5275 | RIA 1193
Streptomyces citreo?uorescens AL (Korenyako et al. 1960) Pridham 1970
| INMI 2292 | ISP 5265 | RIA 1187 | RIA 648
Streptomyces clavifer AL (Millard and Burr 1926) Waksman 1953 CBS

101.27 | DSM 40843 | NRRL B-2557
Streptomyces clavuligerus AL Higgens and Kastner 1971 ATCC 27064 |
DSM 40751 | IMET 43657 | JCM 4710, AB045869 | NRRL 3585
Streptomyces cochleatus VP Nakagaito et al. 1993 -> Kitasatospora
cochleata M-5, U93316, AB022871 | ATCC 51235 | DSM 41652 |
NBRC 14768 | JCM 8799
Streptomyces coelescens AL (Krassilnikov et al. 1965) Pridham 1970
ATCC 19830 | CBS 679.72 | DSM 40421, AF503496 | NBRC 13378 |
INMI 20-41 | ISP 5421 | RIA 1339
Streptomyces coelico?avus VP Terekhova 1986 DSM 41471 | INA 9630 |
JCM 6918
Streptomyces coelicolor AL (Mller 1908) Waksman and Henrici 1948
ATCC 23899 | CBS 210.27 | CBS 795.68 | CUB 100 | DSM 40233,
Z76678, Stm.coeli4 | NBRC 12854 | ISP 5233 | JCM 4357 | RIA 1173
Streptomyces coeruleo?avus VP Preobrazhenskaya and Maximova 1986
INA 2206
259
Streptomyces coeruleofuscus AL (Preobrazhenskaya 1957) Pridham et al.

12757 | IMET 43574 | INA 2922/57 | ISP 5144, AJ399473 | RIA 1022
Streptomyces coeruleoprunus VP Preobrazhenskaya 1986 ATCC 43681 |
DSM 41472 | INA 1655 | JCM 6919
Streptomyces coeruleorubidus AL (Preobrazhenskaya 1957) Pridham et al.
12855 | IMET 42060 | INA 12531/54 | ISP 5145, AJ306622, AJ306622
| JCM 4359 | RIA 1132
Streptomyces coerulescens AL (Preobrazhenskaya 1957) Pridham et al. 1958

| IMET 43578 | INA 4562 | ISP 5146, AJ399462 | RIA 1023
Streptomyces collinus AL Lindenbein 1952 ATCC 19743 | CBS 482.68 |

DSM 2012 | ICMP 12539 | NBRC 12759 | ISP 5129, AJ399462 | RIA
1024
Streptomyces colombiensis AL Pridham et al. 1958 MA-52 | ATCC 27425 |
CBS 755.72 | DSM 40558 | NBRC 13454 | ISP 5558 | KCC S-0675 | KCC
S-0740 | NRRL B-1990 | RIA 1415
Streptomyces corchorusii AL Ahmad and Bhuiyan 1958 ATCC 25444 | CBS
677.69 | DSM 40340 | NBRC 13032 | ISP 5340 | JCM 4286 | KCC S-0286
| NCIB 9476 | RIA 1224
Streptomyces costaricanus VP Esnard et al. 1995 CR-43 | ATCC 55274 |

NRRL B-16897
Streptomyces cremeus AL (Kudrina 1957) Pridham et al. 1958 ATCC 19744
| ATCC 19897 | CBS 483.68 | DSM 40147 | NBRC 12760 | IMET 43743
| INA 815/54 | ISP 5147 | RIA 1025
Streptomyces crystallinus AL Tresner et al. 1961 T-1384 | DSM 40945 | JCM

5067 | KCC S-1067 | NRRL B-3629
Streptomyces curacoi AL Cataldi 1963 SC 3064 | ATCC 13385 | CBS 484.68
| DSM 40107 | NBRC 12761 | ISP 5107 | JCM 4219 | RIA 1026
Streptomyces cuspidosporus AL Higashide et al. 1966 B-79 | ATCC 33340 |

DSM 41425 | DSM 41653 | NBRC 12378 | JCM 4316 | NRRL B-5620
Streptomyces cyaneofuscatus AL (Kudrina 1957) Pridham et al. 1958
| IMET 41583 | INA 99/54 | ISP 5148 | RIA 1027
Streptomyces cyaneus AL (Krassilnikov 1941) Waksman 1953 H-112 |

ATCC 14923 | CBS 647.72 | DSM 40108, AJ310927 | NBRC 13346 |
IMRU 3761 | ISP 5108 | LBG A 3119 | NRRL B-2296, AF346475 | RIA
1307
Streptomyces cyanoalbus AL (Krassilnikov and Agre 1960) Pridham 1970
| INMI 414 | ISP 5198 | RIA 1150 | RIA 662
Streptomyces cystargineus VP (Kusakabe and Isono 1992) Nakagaito et al.

1993 <- Kitasatospora cystarginea (basonym) -> Kitasatospora cys-
targinea RK-419 | ATCC 49931 | DSM 41680 | FERM P-8006 | NBRC
14836 | JCM 7356, U93318, Kts.cystar 458
Streptomyces daghestanicus AL (Sveshnikova 1957) Pridham et al. 1958
| INA 2656/55 | ISP 5149 | JCM 4365 | RIA 1028
Streptomyces diastaticus subsp. diastaticus AL (Krainsky 1914) Waksman

and Henrici 1948 ATCC 3315 | CBS 713.72 | DSM 40496, X53161,
Stm.diasta | NBRC 13412 | IMET 40274 | ISP 5496, X53161, Stm.diasta
| JCM 4128 | JCM 4745 | NRRL B-1270 | RIA 1373
45 8
Kitasatospo ria cystargin ea was transferred to Strep tomy c es a s S. c ys targineu s. S ubs eq uently, Zhang e t a l. (199 7) h ave p ro pos ed the
revival of the ge nus K ita sa tospora and the specie s K. cystarginea.
260
Streptomyces diastaticus subsp. ardesiacus AL (Baldacci et al. 1955) Prid-

ham et al. 1958 CBS 100.56 | DSM 40934 | ETH 24355 | IPV 755 | JCM
5815 | NRRL B-1773
Streptomyces diastatochromogenes AL (Krainsky 1914) Waksman and
Henrici 1948 ATCC 12309, D63867, Stm.dichrm | CBS 370.58 | CBS
690.72 | DSM 40449 | NBRC 13389 | NBRC 3337 | ISP 5449 | NRRL
B-1689 | RIA 1350
Streptomyces distallicus VP (Locci et al. 1969) Witt and Stackebrandt 1991
= Streptomyces netropsis (senior heterotypic synonym) <- Streptover-
ticillium distallicum (basonym) DSM 40846 | NBRC 15815 | IPV 1983
| JCM 4544 | KCC S-0544 | NCIB 8936 | NRRL 2886 | VKM Ac-948
Streptomyces djakartensis AL Huber et al. 1962 FH 1279 | ATCC 13441 |

DSM 40743 | JCM 4957
Streptomyces durhamensis AL Gordon and Lapa 1966 59123 | ATCC 23194 |
CBS 742.72 | DSM 40539 | NBRC 13441 | IMET 43359 | ISP 5539 | JCM
4291 | RIA 1402
Streptomyces echinatus AL Corbaz et al. 1957 ATCC 19748 | CBS 409.59 |
CBS 487.68 | CUB 95 | DSM 40013 | DSM 41251 | NBRC 12763 | IMET
40461 | ISP 5013, AJ399465, AJ399465 | JCM 4144 | JCM 4574 | KCC
S-0144 | KCC S-0574 | NRRL 2587 | RIA 1029
Streptomyces echinoruber VP Palleroni et al. 1981 X-14077 | DSM 41696 |
NBRC 14238 | JCM 5016 | KCC S-0516 | NCIMB 12831 | NRRL 8144
Streptomyces ederensis AL Wallhusser et al. 1966 FH 1277 | ATCC 15304
| DSM 40741 | JCM 4958
Streptomyces ehimensis VP (Shibata et al. 1954) Witt and Stackebrandt 1991

<- Streptoverticillium ehimense (basonym) 138 | ATCC 23903 | CBS
799.68 | DSM 40253 | NBRC 12858 | NBRC 3398 | ISP 5253 | RIA 1179
Streptomyces endus AL Anderson and Gottlieb 1952 9 20 | ATCC 23904 |
4213 | NRRL 2339 | RIA 1141
Streptomyces enissocaesilis VP Sveshnikova 1986 ATCC 43682 | DSM
41454 | INMI 40-31 | VKM 130
Streptomyces erumpens AL Calot and Cercos 1963 ATCC 23266 | CBS
252.65 | DSM 40941, | JCM 5060 | NRRL B-3163
Streptomyces erythraeus AL (Waksman 1923) Waksman and Henrici 1948
-> Saccharopolyspora erythraea M-5-12559 | ATCC 11635 | CBS
727.72 | DSM 40517 | DSM 41036 | NBRC 13426 | ISP 5517 | JCM 4026
| JCM 4748 | NCIB 8594 | NRRL 2338, X53198, Scp.erythr | RIA 1387
Streptomyces erythrogriseus AL Falcao de Morais and Dalia Maia 1959

IAUR 1173 | ATCC 27427 | CBS 485.74 | CBS 485.74 | DSM 40116 |
ISP 5116
Streptomyces eurocidicus VP (Okami et al. 1954) Witt and Stackebrandt
1991 <- Streptoverticillium eurocidicum (basonym) ATCC 27428 |
4029 | NIHJ 267 | NRRL B-1676 | RIA 1452 | RIA 733
Streptomyces europaeiscabiei VP Bouchek-Mechiche et al. 2000 CFBP
4497, AJ007423 | ICMP 13714 | NCPPB 4039
Streptomyces eurythermus AL Corbaz et al. 1957 ATCC 14975, D63870,
Stm.euryth | ATCC 19749 | CBS 488.68 | DSM 40014 | NBRC 12764 |
IMET 43078 | ISP 5014 | NRRL 2539 | RIA 1030
Streptomyces exfoliatus AL (Waksman and Curtis 1916) Waksman and
| NBRC 13191 | IMRU 3316 | ISP 5060 | NRRL B-1237 | RIA 1031
261
Streptomyces felleus AL Lindenbein 1952 26 | ATCC 19752 | CBS 491.68

| DSM 40130, Z76681, Stm.felleu | NBRC 12766 | ISP 5130 | KCC
S-0368 | RIA 1033

Streptomyces fervens subsp. fervens VP (Baldacci and Locci 1974) Witt
and Stackebrandt 1991 = Streptomyces roseoverticillatus (senior het-
erotypic synonym) <- Streptoverticillium fervens subsp. fervens (ba-
sonym) ATCC 27429 | ISP 5086 | NRRL 2755
Streptomyces fervens subsp. melrosporus VP (Mason et al. 1965) Witt
and Stackebrandt 1991 = Streptomyces roseoverticillatus (senior het-
erotypic synonym) <- Streptoverticillium fervens subsp. melrosporus
(basonym) UC 2459 | DSM 40905 | NBRC 15920 | IPV 2022 | JCM
4926 | KCC S-0926 | NRRL 3117
Streptomyces ?lamentosus AL Okami and Umezawa 1953 1-C-9 | ATCC
5022 | RIA 1034
Streptomyces ?lipinensis AL Ammann et al. 1955 114-8 | ATCC 23905 |
CBS 309.56 | CBS 801.68 | DSM 40112 | DSM 41155 | ETH 20722 | ETH
28584 | ETH 28594 | NBRC 12860 | ISP 5112 | JCM 4369 | KCC S-0369
| NRRL 2437 | RIA 1124
Streptomyces ?mbriatus AL (Millard and Burr 1926) Waksman and Lecheva-

lier 1953 ATCC 15051 | CBS 453.65 | DSM 40942 | NRRL B-3175
Streptomyces ?micarius AL (Duche 1934) Waksman and Henrici 1948
ATCC 25449 | CBS 420.34 | CBS 682.69 | DSM 40322 | NBRC 13037
| ISP 5322 | RIA 1229
Streptomyces ?nlayi AL (Szabo et al. 1963) Pridham 1970 R-1-30 | ATCC

23340 | CBS 802.68 | DSM 40218 | NBRC 13201 | ISP 5218 | RIA 1162
Streptomyces ?aveolus AL (Waksman 1923) Waksman and Henrici 1948
ATCC 19754 | ATCC 3319 | CBS 493.68 | DSM 40061 | NBRC 12768 |
IMET 40233 | IMRU 3319 | ISP 5061 | JCM 4032 | JCM 4577 | RIA 1035
Streptomyces ?aveus VP (Cross et al. 1963) Goodfellow et al. 1986 <- Mi-
croellobosporia ?avea (basonym) ATCC 15332 | CBS 355.67 | DSM
43029 | DSM 43153 | NBRC 12190 | IMET 43554 | IMRU 3857 | JCM
3035 | KCC 3035 | NCIB 95 | RIA 896
Streptomyces ?avidofuscus VP Preobrazhenskaya 1986 ATCC 43683 | DSM
41473 | INA 15719 | JCM 6920
Streptomyces ?avidovirens AL (Kudrina 1957) Pridham et al. 1958 ATCC
19900 | CBS 684.69 | DSM 40150 | NBRC 13039 | IMET 43744 | INA
12287 | ISP 5150 | RIA 1231
Streptomyces ?aviscleroticus VP Goodfellow et al. 1986 <- Chainia ?ava
(basonym) ATCC 19346 | ATCC 19347 | DSM 43152 | NBRC 12998 |
IMET 43617 | ISP 5270 | KCC 3100 | NCIB 11008 | RIA 883
Streptomyces ?avofungini VP Uri and Bekesi 1958 SA-IX-3 | ATCC 27430 |
CBS 411.59 | CBS 672.72 | DSM 40366 | NBRC 13371 | ISP 5366 | JCM
4753 | RIA 1332
Streptomyces ?avofuscus VP (Kudrina 1957) Preobrazhenskaya 1986 <-
Streptomyces globisporus subsp. ?avofuscus (basonym) ATCC
19908 | DSM 41426 | INA 1565 | NRRL B-2594
Streptomyces ?avogriseus AL (Duche 1934) Waksman and Lechevalier 1953
ATCC 25452 | CBS 101.34, AJ494864 | DSM 40323 | NBRC 13040 |
IMET 43576 | ISP 5323 | RIA 1232

Streptomyces ?avopersicus VP (Oliver et al. 1961) Witt and Stackebrandt
1991 = Streptomyces netropsis (senior heterotypic synonym) <- Strep-
toverticillium ?avopersicum (basonym) M-141 | ATCC 19756 | CBS
494.68 | DSM 40093 | NBRC 12769 | ISP 5093 | KCC S-0307 | KCC
S-0370 | NRRL 2820 | RIA 1036
262
Streptomyces ?avotricini AL (Preobrazhenskaya and Sveshnikova 1957)

Pridham et al. 1958 ATCC 19757 | ATCC 23621 | CBS 495.68 | DSM
40152 | NBRC 12770 | IMET 42057 | INA 11669/58 | ISP 5152 | RIA
1037
Streptomyces ?avovariabilis VP Sveshnikova 1986 ATCC 43684 | DSM
41479 | DSM 41503 | DSM 41688 | INMI 702 | NRRL B-16367 | VKM
141
Streptomyces ?avovirens AL (Waksman 1923) Waksman and Henrici 1948
ATCC 19758 | ATCC 3320 | CBS 129.20 | CBS 496.68 | DSM 40062 |
NBRC 12771 | NBRC 3412 | IMET 40280 | IMRU 3320 | ISP 5062 | KCC
S-0035 | RIA 1038
Streptomyces ?avoviridis VP Preobrazhenskaya 1986 ATCC 19759 | ATCC
2314 | ISP 5153 | RIA 1039
Streptomyces ?occulus AL (Duche 1934) Waksman and Henrici 1948 LCP
373 | ATCC 25453 | CBS 686.69 | DSM 40327 | ETH 24454 | NBRC
13041 | IMET 43522 | ISP 5327 | KCC S-0476 | NRRL B-2843 | RIA 1233
Streptomyces ?oridae AL Bartz et al. 1951 CBS 308.55 | DSM 40938 | ETH
20731 | NCIB 9345 | NRRL 2423
Streptomyces ?uorescens AL (Krassilnikov 1958) Pridham 1970 ATCC
15860 | ATCC 23907 | CBS 803.68 | DSM 40203 | NBRC 12861 | INMI
592 | ISP 5203 | RIA 647
Streptomyces fradiae AL (Waksman and Curtis 1916) Waksman and Henrici
1948 ATCC 10745 | ATCC 19760 | CBS 498.68 | DSM 40063 | ETH
13363 | ETH 13472 | ETH 28510 | NBRC 12773 | IMET 42051 | IMRU
3535 | ISP 5063 | JCM 4133 | JCM 4579 | NCIB 8233 | NRRL B-1195 |
RIA 1040
Streptomyces fragilis AL Anderson et al. 1956 PD 04926 | ATCC 23908
NRRL 2424 | RIA 1111

Streptomyces fulvissimus AL (Jensen 1930) Waksman and Henrici 1948
ATCC 27431 | CBS 783.72 | DSM 40593 | NBRC 13482 | ISP 5593 |
NCIB 9609 | NRRL B-1453 | RIA 1443
Streptomyces fulvorobeus VP Vinogradova and Preobrazhenskaya 1986
DSM 41455 | INMI 34-280 | JCM 9090 | VKM 158
Streptomyces fumanus AL (Sveshnikova 1957) Pridham et al. 1958 ATCC
10256/54 | ISP 5154, AJ399463 | RIA 1235
Streptomyces fumigatiscleroticus VP Goodfellow et al. 1986 <- Chainia fu-
migata (basonym) ATCC 19345 | DSM 43154 | NBRC 12999 | JCM
3101 | KCC 3044 | KCC 3101 | RIA 729 | RIA 884
Streptomyces galbus AL Frommer 1959 Wind 731 | ATCC 23910 | CBS
831.68 | DSM 40089, X79852, Stm.galbu2 | NBRC 12864 | IMET
42937 | ISP 5089 | NRRL B-2283 | RIA 1121
Streptomyces galilaeus AL Ettlinger et al. 1958 ATCC 14969 | CBS 701.72 |
DSM 40481 | ETH 18822 | NBRC 13400 | ISP 5481 | JCM 4231 | NRRL
2722 | RIA 1361
Streptomyces gancidicus AL Suzuki 1957 DSM 40935 | IFM 1024 | JCM
4171 | KCC S-0171 | NRRL B-1872
Streptomyces gardneri AL (Waksman 1942) Waksman 1961 ATCC 23911
| ATCC 9604 | CBS 832.68 | DSM 40064 | DSM 43020 | ETH 28347 |
NBRC 12865 | NBRC 13974 | NBRC 3385 | IMET 7182 | IMRU 3834
| ISP 5064 | JCM 3004 | JCM 4375 | KCC A-0004 | KCC S-0375 | RIA
1117 | RIA 634
263
Streptomyces gelaticus AL (Waksman 1923) Waksman and Henrici 1948

| IMET 40285 | IMRU 3323 | ISP 5065 | JCM 4012 | JCM 4627 | KCC
S-0376 | RIA 1118

Streptomyces geysiriensis AL Wallhusser et al. 1966 FH 1278 | ATCC
15303 | CBS 546.70 | DSM 40742 | JCM 4962
Streptomyces ghanaensis AL Wallhusser et al. 1966 FH 1290 | ATCC
14672 | CBS 544.70 | DSM 40746 | JCM 4963
Streptomyces gibsonii AL (Erikson 1935) Waksman and Henrici 1948
Schering 242 | ATCC 6852 | CBS 118.60 | CBS 119.60 | DSM 40959 |
DSM 43284 | ETH 16703 | IMET 7023 | IMRU 3420 | JCM 5061 | KCC
S-1061 | NCTC 4575
Streptomyces glaucescens AL (Preobrazhenskaya 1957) Pridham et al. 1958
ATCC 19761 | ATCC 23622 | CBS 499.68 | DSM 40155 | DSM 41504
| NBRC 12774 | IMET 43584 | INA 8731 | ISP 5155 | JCM 4377 | KCC
S-0377 | NCIB 9619 | NCIB 9844 | RIA 1041

Streptomyces glaucosporus VP Agre 1986 ATCC 25183 | DSM 41689 |
NBRC 15416 | INA G-72 | INMI 2979 | JCM 6921 | VKM Ac-1763
Streptomyces glaucus VP Agre and Preobrazhenskaya 1986 ATCC 43685 |
DSM 41456 | INA G-86 | INMI 2965 | JCM 6922 | VKM Ac-803
Streptomyces globisporus subsp. globisporus AL (Krassilnikov 1941) Waks-
man 1953 ATCC 15864 | ATCC 23913 | CBS 834.68 | DSM 40199 |
NBRC 12867 | INMI 2302 | ISP 5199 | RIA 1151 | RIA 335
Streptomyces globisporus subsp. caucasicus AL (Kudrina 1957) Pridham
et al. 1958 AZ-2 | ATCC 19907 | CBS 120.60 | DSM 40814 | INA
13195154
Streptomyces globisporus subsp. ?avofuscus AL (Kudrina 1957) Pridham
et al. 1958 -> Streptomyces ?avofuscus ATCC 19908 | DSM 41426 |
INA 1565
Streptomyces globosus AL (Krassilnikov 1941) Waksman 1953 BJ-333 |
ATCC 14979 | DSM 40815 | IMRU 3736 | NRRL B-2292
Streptomyces glomeratus VP Gauze and Sveshnikova 1986 DSM 41457 |
INA 3980 | INA G-86 | INMI 2965 | VKM 834
Streptomyces glomeroaurantiacus AL (Krassilnikov and Yuan 1965) Prid-
ham 1970 ATCC 15866
Streptomyces gobitricini AL (Preobrazhenskaya and Sveshnikova 1957)
Pridham et al. 1958 FH 2147 | CBS 123.60 | DSM 41701 | NBRC
15419 | JCM 5062 | KCC S-1062 | NRRL B-2596
Streptomyces goshikiensis AL Niida 1966 ATCC 23914 | CBS 835.68 | DSM
40190 | NBRC 12868 | IMET 42067 | ISP 5190 | RIA 1144
Streptomyces gougerotii AL (Duche 1934) Waksman and Henrici 1948
ATCC 10975 | ATCC 25455 | CBS 422.34 | CBS 688.69 | DSM 40324,
Z76687, Stm.gouger | NBRC 13043 | IMET 40289 | ISP 5324
Streptomyces graminearus VP Preobrazhenskaya 1986 DSM 41474 | INA
13982 | JCM 6923
Streptomyces graminofaciens AL Charney et al. 1953 MA-317 | ATCC
5559 | JCM 4157 | JCM 4762 | NRRL B-2609 | RIA 1416
Streptomyces griseinus AL Waksman 1959 68 | ATCC 23915 | ATCC 3478
| CBS 836 | DSM 40047 | NBRC 12869 | IMRU 3478 | ISP 5047 | JCM
4379 | RIA 1113

Streptomyces griseoaurantiacus AL (Krassilnikov and Yuan 1965) Pridham
1970 ATCC 19840 | CBS 682.72 | DSM 40430 | NBRC 13381 | INMI
AK-5 | ISP 5430 | KCC S-0763 | RIA 1342
264
Streptomyces griseobrunneus AL Waksman 1961 ATCC 19762 | CBS

498.68 | CBS 500.68 | DSM 40066 | ETH 31437 | ETH 31581 | NBRC
12775 | IMET 42052 | IMRU 3068 | ISP 5066 | JCM 4380 | RIA 1042
Streptomyces griseocarneus VP (Benedict et al. 1950) Witt and Stackebrandt
1991 <- Streptoverticillium griseocarneum (basonym) AS 4.1368 |
NA 232-M1 | ATCC 12628 | ATCC 19763 | CBS 501.68 | CCM 3228 |
DSM 40004, X99943 | DSM 41062 | NBRC 12776 | NBRC 3387 | ISP
5004 | JCM 4095 | JCM 4580 | KCC S-0095 | LMG 5973 | NRRL B-1068
| NRRL B-1350 | RIA 1043 | RIA 132 | VKM Ac-881
Streptomyces griseochromogenes AL Fukunaga 1955 2A-327 | ATCC 14511

| CBS 714.72 | DSM 40499, AJ310923 | NBRC 13413 | ISP 5499 | JCM
4039 | JCM 4764 | RIA 1374

Streptomyces griseo?avus AL (Krainsky 1914) Waksman and Henrici 1948
ATCC 25456 | CBS 409.52 | CBS 689.69 | DSM 40456 | ETH 10249 |
NBRC 13044 | NBRC 13046 | IMET 43530 | ISP 5456 | KCC S-0479 |
RIA 1236
Streptomyces griseofuscus AL Sakamoto et al. 1962 1068 | ATCC 23916 |
4276 | JCM 4641 | RIA 1145
Streptomyces griseoincarnatus AL (Preobrazhenskaya et al. 1957) Pridham
et al. 1958 ATCC 23623 | ATCC 23917 | CBS 838.68 | DSM 40274 |
NBRC 12871 | INA 9673/55 | ISP 5274 | RIA 1192
Streptomyces griseoloalbus AL (Kudrina 1957) Pridham et al. 1958 ATCC
1875/54 | ISP 5468 | RIA 1238
Streptomyces griseolosporeus VP Wellington et al. 1992 <- Kitasatospora
griseola (basonym) -> Kitasatospora griseola AM-9660 | DSM
43859, M55221, Kts.griseo | NBRC 14371 | JCM 3339 | NRRL
B-16229 459
Streptomyces griseolus AL (Waksman 1923) Waksman and Henrici 1948
ATCC 19764 | ATCC 3325 | CBS 502.68 | DSM 40067 | NBRC 12777 |
NBRC 3415 | IMET 42053 | IMRU 3325 | ISP 5067 | KCC S-0042 | KCC
S-0043 | KCC S-0581 | NRRL B-1062 | RIA 1044
Streptomyces griseoluteus AL Umezawa et al. 1950 PSA 207 | ATCC 12768
| CBS 676.72 | CCM 3242 | DSM 40392 | DSM 41141 | ETH 24459 |
NBRC 13375 | IMRU 3729 | ISP 5392 | JCM 4041 | JCM 4765 | KCC
S-0041 | NIHJ 22 | NRRL B-1315 | RIA 1336
Streptomyces griseomycini AL (Preobrazhenskaya et al. 1957) Pridham et al.
12778 | INA 13984 | ISP 5159 | RIA 1045
Streptomyces griseoplanus AL Backus et al. 1957 AA-223 | ATCC 19766 |
Streptomyces griseorubens AL (Preobrazhenskaya et al. 1957) Pridham et al.
12780 | INA 6124/54 | ISP 5160 | RIA 1047
Streptomyces griseoruber AL Yamaguchi and Saburi 1955 H-4650 | ATCC
23919 | CBS 903.68 | DSM 40281 | NBRC 12873 | ISP 5281 | KCC
S-0200 | KCC S-0642 | RIA 1195
Streptomyces griseorubiginosus AL (Ryabova and Preobrazhenskaya 1957)
Pridham et al. 1958 ATCC 23627 | ATCC 25459 | CBS 692.69 | DSM
40469 | NBRC 13047 | INA 7712 | ISP 5469, AJ399488 | RIA 1239
45 9
Kitasatospo ria griseo la was transferred to S treptom yces as S . gris eolos poreu s. Sub seq uent ly, Zhan g et al. (1997 ) ha ve p ro pos ed the
revival of the ge nus K it asa tospora and the species K. grise ola .
265
Streptomyces griseosporeus AL Niida and Ogasawara 1960 B-793 | ATCC

27435 | CBS 137.72 | CBS 759.72 | DSM 40562 | NBRC 13458 | IMET
43543 | ISP 5562 | JCM 4766 | RIA 1419
Streptomyces griseostramineus AL (Preobrazhenskaya et al. 1957) Pridham
NBRC 12781 | INA 10381 | ISP 5161 | RIA 1048
Streptomyces griseoverticillatus VP (Shinobu and Shimada 1962) Witt
and Stackebrandt 1991 <- Streptoverticillium griseoverticillatum
(basonym) 722 | ATCC 27436 | CBS 721.72 | DSM 40507 | NBRC
13420 | ISP 5507 | JCM 4202 | JCM 4767 | RIA 1381
Streptomyces griseoviridis AL Anderson et al. 1956 P-D 04955 | ATCC
| JCM 4643 | NRRL 2427 | RIA 1170
Streptomyces griseus subsp. griseus AL (Krainsky 1914) Waksman and

Henrici 1948 ATCC 23345, AF056711, Stm.grise2 | ATCC 23921
| CBS 345.35 | CBS 905.68 | DSM 40236 | ETH 4289 | NBRC 12875 |
NBRC 3430 | IMRU 3463 | ISP 5236, AY094371 | KCC S-0047 | KCC
S-0644 | NCIB 8232 | NCIB 8506 | NCTC 6961 | RIA 1176
Streptomyces griseus subsp. alpha AL (Ciferri 1927) Pridham 1970 CBS
219.25 | DSM 40937 | NRRL B-2249
Streptomyces griseus subsp. cretosus AL Pridham 1970 ATCC 27903 |
NBRC 13457 | ISP 5561 | KCC S-0742 | RIA 1418
Streptomyces griseus subsp. solvifaciens AL Pridham 1970 DSM 40933 |
NBRC 13689 | NRRL B-1561
Streptomyces hachijoensis VP (Hosoya et al. 1952) Witt and Stackebrandt
1991 <- Streptoverticillium hachijoense (basonym) ATCC 19769 |
Streptomyces halstedii AL (Waksman and Curtis 1916) Waksman and
| NBRC 12783 | IMET 40322 | IMRU 3328 | ISP 5068 | KCC S-0052
| RIA 1050
Streptomyces hawaiiensis AL Cron et al. 1956 ATCC 12236 | ATCC 19771

| CBS 509.68 | DSM 40042 | NBRC 12784 | IMET 43082 | ISP 5042,
AJ399466 | KCC S-0172 | KCC S-0585 | NCIB 9410 | RIA 1051

Streptomyces heliomycini VP Preobrazhenskaya 1986 DSM 41690 | NBRC
15899 | INA 2915 | VKM Ac-1778
Streptomyces helvaticus AL (Krassilnikov et al. 1965) Pridham 1970 ATCC
19841 | CBS 683.72 | DSM 40431 | NBRC 13382 | INMI 1013B | ISP
5431 | RIA 1343
Streptomyces herbaricolor AL Kawato and Shinobu 1959 ATCC 23922 |
CBS 906.68 | DSM 40123 | NBRC 12876 | ISP 5123 | NRRL B-3299 |
RIA 1126 | RIA 654
Streptomyces hiroshimensis VP (Shinobu 1955) Witt and Stackebrandt 1991
<- Streptoverticillium hiroshimense (basonym) ATCC 19772 | CBS
510.68 | DSM 40037 | NBRC 12785 | IMET 43546 | ISP 5037 | KCC
S-0098 | KCC S-0586 | NRRL B-1823 | OEU 201 | RIA 1052
Streptomyces hirsutus AL Ettlinger et al. 1958 ATCC 19773 | CBS 511.68 |
DSM 40095 | ETH 16660 | NBRC 12786 | IMET 42054 | ISP 5095 | RIA
1053
Streptomyces humidus AL Nakazawa and Shibata 1956 23572 | ATCC 12760
| ATCC 23923 | CBS 907.68 | DSM 40263 | NBRC 12877 | ISP 5263 | RIA
1186
Streptomyces humiferus VP (Krasilnikov 1962) Goodfellow et al. 1986 <-
Actinopycnidium caeruleum (basonym) ATCC 15719 | DSM 43030,
266
AF503491 | NBRC 12244 | IMET 43409 | JCM 3037 | KCC 3044 | KCC
A-0037 | RIA 729
Streptomyces hydrogenans AL Lindner et al. 1958 FHP 678 | ATCC 19631 |
CBS 776.72 | DSM 40586 | NBRC 13475 | IMET 43766 | ISP 5586 | RIA
1436
Streptomyces hygroscopicus subsp. hygroscopicus AL (Jensen 1931) Waks-
man and Henrici 1948 M5-13184 | ATCC 27438 | CBS 773.72 | DSM
40578 | DSM 41148 | ETH 28553 | NBRC 13472 | ISP 5578 | JCM 4772 |
NRRL 2387, AJ391820 | RIA 1433
Streptomyces hygroscopicus subsp. angustmyceticus AL Yuntsen et al. 1956
ATCC 15484 | DSM 41683 | IAM 6A-704 | NBRC 3934 | JCM 4053 |
KCC S-0053
Streptomyces hygroscopicus subsp. decoyicus AL Vavra et al. 1959 DSM
41427 | NBRC 13977 | JCM 4550 | KCC S-0550 | NCIB 9752 | NRRL
2666
Streptomyces hygroscopicus subsp. glebosus AL Ohmori et al. 1962 BJ 6 |
ATCC 14607 | DSM 40823 | JCM 4954
Streptomyces hygroscopicus subsp. ossamyceticus AL Schmitz et al. 1965
BL-703 | ATCC 15420 | DSM 40824 | JCM 4965
Streptomyces iakyrus AL de Querioz and Albert 1962 IAUR 3923 | ATCC
15375 | CBS 702.72 | DSM 40482 | NBRC 13401 | ISP 5482, AJ399489
| JCM 4254 | JCM 4773 | RIA 1362
Streptomyces indiaensis VP (Gupta 1965) Kudo and Seino 1987 <- Strep-
tosporangium indianense (basonym) ATCC 33330 | CBS 560.75 |
DSM 43803 | NBRC 13964 | JCM 3053 | KCC A-0053 | NCIB 9794
Streptomyces indigoferus AL Shinobu and Kawato 1960 ATCC 23924 | CBS
908.68 | DSM 40124 | NBRC 12878 | IMET 42938 | ISP 5124 | OEU 709
| RIA 1127
Streptomyces indonesiensis VP Sembiring et al. 2001 A4R2, AJ391835 |

DSM 41759 | NCIMB 13673
Streptomyces intermedius AL (Krger 1904) Waksman 1953 ATCC 3329 |
CBS 101.21 | CBS 694.69 | DSM 40372, Z76686, Stm.intmed | ICMP
12540 | NBRC 13049 | IMET 41384 | ISP 5372 | RIA 1241
Streptomyces inusitatus AL Hasegawa et al. 1978 T-41575 | ATCC 33341 |
CBS 196.78 | DSM 41441 | NBRC 13601 | JCM 4988 | KCC S-0988
Streptomyces ipomoeae AL (Person and Martin 1940) Waksman and Henrici
1948 9820 | ATCC 25462 | CBS 695.69 | DSM 40383 | ICMP 12541 |
NBRC 13050 | ISP 5383 | RIA 1242
Streptomyces janthinus AL (Artamonova and Krassilnikov 1960) Pridham
12879 | INMI 117 | ISP 5206, AJ399478, AJ399478 | KCC S-0387 | RIA
1155 | RIA 659
Streptomyces javensis VP Sembiring et al. 2001 B22P3, AJ391833 | DSM
41764 | NCIMB 13679
Streptomyces kanamyceticus AL Okami and Umezawa 1957 K-2J | ATCC
| JCM 4775 | NCIB 9343 | NRRL B-2535 | RIA 1375 | RIA 690
Streptomyces kashimirensis VP (Gupta and Chopra 1963) Witt and Stacke-

brandt 1991 <- Streptoverticillium kashmirense (basonym) RRL 37
A/9 | ATCC 27439 | CBS 665.72 | DSM 40336 | NBRC 13364 | IPV 2023
| ISP 5336 | NRRL B-3103 | RIA 1325
Streptomyces kasugaensis VP Hamada et al. 1995 BL904 | M338-M1,

AB024441 | ATCC 15714 | DSM 40819 | NBRC 13851 | JCM 4208 |
KCC S-0208
267
Streptomyces katrae AL Gupta and Chopra 1963 RRL 5036 | ATCC 27440
NRRL B-3093 | RIA 1408

Streptomyces kentuckensis VP (Barr and Carman 1956) Witt and Stacke-
brandt 1991 = Streptomyces netropsis (senior heterotypic synonym)
<- Streptoverticillium kentuckense (basonym) ATCC 12691 | DSM
40052 | IMET 43083
Streptomyces kifunensis VP (Barr and Carman 1956) Witt and Stackebrandt
1991 ATCC 51379 | DSM 41654 | NBRC 15206
Streptomyces kishiwadensis VP (Shinobu and Kayamura 1964) Witt and
Stackebrandt 1991 <- Streptoverticillium kishiwadense (basonym)
OEU 738 | RIA 1244
Streptomyces kunmingensis VP (Ruan et al. 1985) Goodfellow et al. 1986
<- Chainia kunmingensis (basonym) 80-3024 | ATCC 35682 | DSM
41681 | NBRC 14463 | JCM 7473
Streptomyces kurssanovii AL (Preobrazhenskaya et al. 1957) Pridham et al.
1958 ATCC 15824 | ATCC 19774 | ATCC 23629 | CBS 512.68 | DSM
40162 | NBRC 13192 | INA 10294 | ISP 5162 | RIA 1054
Streptomyces labedae VP Lacey 1987 A-24 | IMRU 3737 | ISP 5059 | NRRL
B-5616
Streptomyces ladakanum VP (Hanka et al. 1966) Witt and Stackebrandt
1991 = Streptomyces mobaraensis (senior heterotypic synonym)
<- Streptoverticillium ladakanum (basonym) ATCC 27441 | DSM
40587, X53167, Stm.mobara | NRRL 3191
Streptomyces lanatus AL Frommer 1959 SV 1944 | ATCC 19775 | CBS
513.68 | DSM 40090 | NBRC 12787 | ISP 5090, AJ399469 | NRRL
B-2291 | RIA 1055
Streptomyces lateritius AL (Sveshnikova 1957) Pridham et al. 1958 ATCC
6993 | ISP 5163 | JCM 4389, AF454764 | RIA 1056
Streptomyces laurentii AL Trejo et al. 1979 SC9895 | ATCC 31255 | DSM
41684 | IMET 43866 | JCM 5063 | KCC S-1063 | PCM 2368
Streptomyces lavendofoliae AL (Kuchaeva et al. 1961) Pridham 1970
| INA 3613 | ISP 5217 | RIA 1161 | RIA 750
Streptomyces lavendulae subsp. lavendulae AL (Waksman and Curtis 1916)

Waksman and Henrici 1948 ATCC 8664 | DSM 2014, X53173,
Stm.lavend | NBRC 12789, D85116, Stm.lave12 | NBRC 3177 | ISP
5069, X53173, Stm.lavend
Streptomyces lavendulae subsp. grasserius AL (Kuchaeva et al. 1961) Prid-
ham 1970 ATCC 15875 | ATCC 25457 | CBS 690.69 | DSM 40385 |
IAM 2A-458 | NBRC 13045 | ISP 5385 | JCM 4056 | JCM 4556 | KCC
S-0056 | KCC S-0556 | RIA 1237
Streptomyces lavenduligriseus VP (Locci et al. 1969) Witt and Stackebrandt
1991 <- Streptoverticillium lavenduligriseum (basonym) BA-6903 |
FD 22124 | ATCC 13306 | CBS 706.72 | DSM 40487 | NBRC 13405 | ISP
5487 | NRRL B-3173 | RIA 1366
Streptomyces lavendulocolor AL (Kuchaeva et al. 1961) Pridham 1970
ATCC 15871 | CBS 911.68 | DSM 40216 | NBRC 12881 | INA 4518 | ISP
5216 | RIA 1160 | RIA 749
Streptomyces levis VP Sveshnikova 1986 ATCC 43686 | DSM 41458 | INA
9020 | JCM 6924 | VKM 835
Streptomyces libani subsp. libani AL Baldacci and Grein 1966 2343 FI |
ATCC 23732 | CBS 753.72 | DSM 40555 | DSM 41227 | NBRC 13452
268
| IPV 1945 | ISP 55555 | JCM 4322 | JCM 4781 | KCC S-0322 | KCC
S-0781 | NRRL B-3446 | RIA 1413
Streptomyces libani subsp. rufus AL Baldacci and Grein 1966 Fi 2501 | CMI
130 | ATCC 23731 | DSM 41230 | IMRU 3918 | IPV 1942 | JCM 4325 |
KCC S-0325 | NCIB 10976 | NRRL B-3445
Streptomyces lienomycini VP Gauze and Maksimova 1986 ATCC 43687 |
DSM 41475 | INA 478 | JCM 6925
Streptomyces lilacinus VP (Nakazawa et al. 1956) Witt and Stackebrandt
1991 <- Streptoverticillium lilacinum (basonym) ATCC 23930 | CBS
914.68 | DSM 40254 | ETH 24214 | NBRC 12884 | NBRC 3944 | IPV
1999 | ISP 5254 | JCM 4188 | JCM 4648 | RIA 1180
Streptomyces limosus AL Lindenbein 1952 B Br 136 | ATCC 19778 | CBS
531.68 | DSM 40131, Z76679, Stm.limosu | NBRC 12790 | ISP 5131 |
JCM 4393 | RIA 1058
Streptomyces lincolnensis AL Mason et al. 1963 2376 | ATCC 25466 | CBS
630.70 | DSM 2013 | DSM 40355 | NBRC 13054 | ISP 5355 | JCM 4287 |
KCC S-0287 | NCIB 9413 | NRRL 2936, X79854, Stm.lincln | RIA 1246
Streptomyces lipmanii AL (Waksman and Curtis 1916) Waksman and Henrici
12791 | IMET 40336 | IMRU 3331 | ISP 5070 | RIA 1059
Streptomyces litmocidini AL (Ryabova and Preobrazhenskaya 1957) Prid-
ham et al. 1958 ATCC 19914 | CBS 533.68 | DSM 40164 | NBRC
12792 | INA 1823/55 | ISP 5164 | JCM 4394 | RIA 1060
Streptomyces lomondensis AL Johnson and Dietz 1969 UC 5022 | ATCC
25299 | DSM 41428 | JCM 4866 | KCC S-0866 | NCIB 10094 | NRRL
3252
Streptomyces longisporo?avus AL Waksman 1953 ATCC 19915 | CBS
915.68 | DSM 40165 | NBRC 12886 | IMET 43506 | INA 81/53 | ISP
5165 | RIA 1133
Streptomyces longispororuber AL Waksman 1953 ATCC 27443 | CBS
789.72 | DSM 40599 | NBRC 13488 | INA 11668/54 | ISP 5599 | KCC
S-0784 | RIA 1449
Streptomyces longisporus AL (Krassilnikov 1941) Waksman 1953 ATCC
4417/56 | ISP 5166, AJ399475, AJ399475 | JCM 4395 | RIA 1134
Streptomyces longwoodensis VP Prosser and Palleroni 1981 X-14537 |
ATCC 29251 | DSM 41677 | NBRC 14251 | JCM 4976 | KCC S-0976
Streptomyces lucensis AL Arcamone et al. 1957 ATCC 17804 | FI 1163 |
4490 | RIA 1248
Streptomyces luridiscabiei VP Park et al. 2003 KACC 20252 | LMG 21390
| S63, AF361784
Streptomyces luridus AL (Krassilnikov et al. 1957) Waksman 1961 ATCC

19782 | CBS 534.68 | DSM 40081 | NBRC 12793 | INMI 111 | ISP 5081 |
JCM 4591 | RIA 1061
Streptomyces lusitanus AL Villax 1963 ATCC 15842 | ATCC 27444 | CBS
765.72 | DSM 40568 | NBRC 13464 | ISP 5568 | JCM 4785 | KCC S-0785
| NCIB 9585 | RIA 1425
Streptomyces luteogriseus AL Schmitz et al. 1964 C-4657 | ATCC 15072 |

CBS 703.72 | DSM 40483 | NBRC 13402 | ISP 5483, AJ399490 | JCM
4786 | RIA 1363
Streptomyces luteosporeus VP (Locci et al. 1969) Witt and Stackebrandt
1991 <- Streptoverticillium album (basonym) BA 3972 | ATCC 33049
| DSM 40833 | JCM 4542 | NRRL 2401
269
Streptomyces luteoverticillatus VP (Shinobu 1956) Witt and Stackebrandt

1991 <- Streptoverticillium luteoverticillatum (basonym) ATCC
| JCM 46499 | OEU 486 | RIA 1109
Streptomyces lydicus AL De Boer et al. 1956 D-45 | ATCC 25470, Y15507,

Stm.lydicu | CBS 703.69 | DSM 40461 | NBRC 13058 | IMET 43531 |
ISP 5461 | JCM 4492 | NRRL 2433 | RIA 1250
Streptomyces macrosporus VP Goodfellow et al. 1988 A1201 | K44 | ATCC
51533 | DSM 41449, Z68099, Stm.macspr | NBRC 14748 | INMI 2892
| JCM 6305
Streptomyces malachitofuscus VP Preobrazhenskaya and Terekhova 1986

ATCC 25471 | CBS 881.69 | DSM 40332 | NBRC 13059 | INA 739 | ISP
5332 | KCC S-0493 | RIA 1251
Streptomyces malachitospinus VP Preobrazhenskaya and Terekhova 1986
INA 316 | INMI 217
Streptomyces malaysiensis VP Al-Tai et al. 1999 ATB-11, AF117304 | DSM
41697
Streptomyces mashuensis VP (Sawazaki et al. 1955) Witt and Stackebrandt
1991 <- Streptoverticillium mashuense (basonym) IPCR 449 | ATCC
23934 | CBS 918.68 | DSM 40221, X79323, Stm.mashue | NBRC 12888
| IMET 42941 | ISP 5221 | JCM 4059 | JCM 4650 | RIA 1165
Streptomyces massasporeus AL Shinobu and Kawato 1959 ATCC 19785 |

CBS 537.68 | DSM 40035 | NBRC 12796 | ISP 5035 | JCM 4139 | JCM
4593 | OEU 602 | RIA 1064
Streptomyces matensis AL Margalith et al. 1959 M-ME/17 | ATCC 23935 |
CBS 919.68 | DSM 40188 | ETH 24398 | NBRC 12889 | IMET 42065 |
ISP 5188 | JCM 4268 | JCM 4277 | JCM 4651 | NRRL B-2576 | RIA 1142
Streptomyces mauvecolor AL Okami and Umezawa 1961 AT 417 | FH 2163
| ATCC 29835 | DSM 41702 | NBRC 13854 | JCM 5002 | KCC S-1002
Streptomyces mediocidicus VP (Labeda 1988) Wellington et al. 1992 <-

Kitasatospora mediocidica (basonym) -> Kitasatospora mediocidica
LL 80, U93324 | ATCC 49055 | DSM 43929 | NBRC 14789 | NRRL
B-16109 460
Streptomyces mediolani AL Arcamone et al. 1968 2215/74 FI | IMI 134886
| MS 1487 | ATCC 33021 | DSM 41058 | DSM 41647 | IMRU 3934 | IPV
1952 | JCM 5076 | KCC S-1076 | NCIB 10969

Streptomyces megasporus VP Agre 1986 ATCC 43688 | DSM 41476,
Z68100, Stm.megspr | INA M-22 | INMI 2869 | JCM 6929
Streptomyces melanogenes AL Sugawara and Onuma 1957 V-1179 | ATCC
| RIA 1146
Streptomyces melanosporofaciens AL Arcamone et al. 1959 Fi 1573 | ATCC

| NRRL B-12234, AJ391837, AJ271887 | RIA 1253
Streptomyces mexicanus VP Petrosyan et al. 2003 CH-M-1035, AF441168

| BM-B-384 | DSM 41796 | NRRL B-24196
Streptomyces michiganensis AL Corbaz et al. 1957 ATCC 14970 | ATCC

19786 | CBS 538.68 | DSM 40015 | ETH 14411 | NBRC 12797 | ISP 5015
| KCC S-0594 | RIA 1065
Streptomyces micro?avus AL (Krainsky 1914) Waksman and Henrici 1948

ATCC 13231 | ATCC 25474 | CBS 124.18 | CBS 884.69 | DSM 40331 |
NBRC 13062 | ISP 5331 | RIA 1254
46 0
Kitasatosporia m ediocidica wa s transferred to Strep tomy c es as S . medioc id ic us . S ubs eque ntly, Zhan g et a l. (1 997) hav e propos ed the
revival of the ge nus K ita sa tospora and the specie s K. me dio cidic a.
270
Streptomyces minutiscleroticus AL (Thirumalachar 1965) Pridham 1970 =

Chainia minutisclerotica (homotypic synonym) HACC 147 | ATCC
17757 | CBS 662.72 | DSM 40301 | NBRC 13361 | ISP 5301 | RIA 1322 |
RIA 885
Streptomyces mirabilis AL Ruschmann 1952 AC-680 | ATCC 27447,
AF112180, AF112180 | CBS 751.72 | DSM 40553 | NBRC 13450 |
ISP 5553 | JCM 4551 | JCM 4791 | KCC S-0551 | KCC S-0791 | NRRL
B-2400 | RIA 1411
Streptomyces misakiensis AL Nakamura 1961 IPCR 7617 | ATCC 23938 |
4062 | JCM 4653 | NRRL B-2923 | RIA 1166
Streptomyces misionensis AL Cercos et al. 1962 INTA 3944 | ATCC 14991 |
4497 | RIA 1255
Streptomyces mobaraensis VP (Nagatsu and Suzuki 1963) Witt and Stacke-
brandt 1991 <- Streptoverticillium mobaraense (basonym) = Strepto-
myces ladakanum (junior heterotypic synonym) 16-22 | ATCC 29032
| DSM 40847 | JCM 4168 | KCC S-0168
Streptomyces monomycini VP Gauze and Terekhova 1986 INA 1465

Streptomyces morookaense VP (Locci and Scho?eld 1989) Witt and Stacke-
brandt 1991 <- Streptoverticillium morookaense (basonym) SF-337 |
ATCC 19166 | CBS 717.72 | DSM 40503 | NBRC 13416 | ISP 5503 | RIA
1377
Streptomyces murinus AL Frommer 1959 1131 | SP 5091 | ATCC 19788 |
CBS 540.68 | DSM 40091 | NBRC 12799 | JCM 4333 | JCM 4595 | NRRL
B-2286 | RIA 1067
Streptomyces mutabilis AL (Preobrazhenskaya and Ryabova 1957) Pridham
NBRC 12800 | IMET 43509 | INA B-472 | ISP 5169 | RIA 1068
Streptomyces mutomycini VP Gauze and Maksimova 1986 ATCC 43689 |
DSM 41691 | INA 4305 | JCM 10455 | VKM Ac-1779
Streptomyces naganishii AL Yamaguchi and Saburi 1955 H-4871 | ATCC
23939 | CBS 923.68 | DSM 40282 | NBRC 12892 | ISP 5282 | RIA 1196
Streptomyces narbonensis AL Corbaz et al. 1955 ATCC 19790 | CBS 542.68
| DSM 40016 | ETH 7346 | NBRC 12801 | ISP 5016 | JCM 4147 | RIA
1069
Streptomyces nashvillensis AL McVeigh and Reyes 1961 V-8 | ATCC 25476
| CBS 886.69 | DSM 40314 | NBRC 13064 | ISP 5314 | NRRL B-2606 |
RIA 1256
Streptomyces netropsis VP (Finlay et al. 1951) Witt and Stackebrandt 1991
<- Streptoverticillium netropsis (basonym) = Streptomyces distalli-
cus (junior heterotypic synonym) = Streptomyces ?avopersicus (ju-
nior heterotypic synonym) = Streptomyces kentuckensis (junior het-
erotypic synonym) 4779 | ATCC 23940 | CBS 924.68 | DSM 40259 |
ETH 15974 | NBRC 12893 | IPV 1720 | IPV 880 | ISP 5259 | JCM 4063 |
JCM 4655 | NRRL 2268 | RIA 1184
Streptomyces neyagawaensis AL Yamamoto et al. 1960 ATCC 27449,
D63869, D63869, Stm.neygaw | CBS 778.72 | DSM 40588 | NBRC
13477 | NBRC 3784 | ISP 5588, AJ399493 | JCM 4796 | NRRL B-3092
| RIA 1438
Streptomyces niger VP (Thirumalachar 1955) Goodfellow et al. 1986 <-

Chainia nigra (basonym) HACC 146 | ATCC 17756 | CBS 230.65
| CBS 663.72 | DSM 40302 | DSM 43049, AJ621607 | NBRC 13092 |
NBRC 13362 | ISP 5302 | JCM 3158 | KCC 3158 | RIA 1323
271
Streptomyces nigrescens AL (Sveshnikova 1957) Pridham et al. 1958

ATCC 23941 | CBS 925.68 | DSM 40276 | NBRC 12894 | INA 1800/54
| ISP 5276 | RIA 1194
Streptomyces nigrifaciens AL Waksman 1961 ATCC 19791 | CBS 543.68 |

DSM 40071 | NBRC 12802 | IMRU 3067 | ISP 5071 | RIA 1070
Streptomyces nitrosporeus AL Okami 1952 0-20 | ATCC 12769 | ATCC
19792 | CBS 544.68 | DSM 40023 | DSM 41158 | ETH 17860 | NBRC
12803 | NBRC 3362 | IMET 43842 | IMRU 3728 | ISP 5023 | JCM 4064 |
KCC S-0064 | KCC S-0598 | RIA 1071
Streptomyces niveiciscabiei VP Park et al. 2003 S78, AF361786 | KACC
20254 | LMG 21392
Streptomyces niveoruber AL Ettlinger et al. 1958 ATCC 14971 | DSM 40638
| ETH 17860 | IMET 43354 | JCM 4234
Streptomyces niveus AL Smith et al. 1956 = Streptomyces caeruleus (se-

nior heterotypic synonym) ATCC 19793 | CBS 545.68 | DSM 40088 |
NBRC 12804 | IMET 43503 | ISP 5088 | NRRL 2466 | RIA 1072
Streptomyces noboritoensis AL Isono et al. 1957 IPCR 97 | ATCC 25477 |
4065 | JCM 4557 | RIA 1257
Streptomyces nodosus AL Trejo 1961 SC 2388 | ATCC 14899 | ATCC 23942
| CBS 926.68 | DSM 40109 | NBRC 12895 | ISP 5109 | JCM 4297 | JCM
4656 | RIA 1123

Streptomyces nogalater AL Bhuyan and Dietz 1966 ATCC 27451 | CBS
| NRRL 3035 | RIA 1406
Streptomyces nojiriensis AL Ishida et al. 1967 SF-426 | ATCC 29781 | DSM

41655 | NBRC 13794 | JCM 3382 | NRRL B-16930
Streptomyces noursei AL Brown et al. 1953 48240 | ATCC 11455 | CBS
240.57 | DSM 40635 | DSM 40636 | DSM 41152 | ETH 13473 | NBRC
15452 | IMRU 3771 | INA 0178 | JCM 4922 | KCC S-0922 | NCIB 8593 |
NRRL B-1714
Streptomyces novaecaesareae AL Waksman and Henrici 1948 ATCC 27452
| CBS 134.20 | CBS 669.72 | DSM 40358 | NBRC 13368 | ISP 5358 |
NRRL B-1267 | RIA 1329

Streptomyces ochraceiscleroticus AL Pridham 1970 = Chainia ochracea
(homotypic synonym) ATCC 15814 | CBS 168.62 | DSM 43155 |
IMET 43492 | ISP 5594 | RIA 710
Streptomyces odorifer AL (Rullmann 1895) Waksman 1953 ATCC 6246 |
CBS 666.72 | DSM 40347, Z76682, Stm.odorif | NBRC 13365 | IMET
41377 | IMRU 3334 | ISP 5347 | JCM 4198 | JCM 4803 | NRRL B-1328
| RIA 1326
Streptomyces olivaceiscleroticus AL Pridham 1970 = Chainia olivacea

(homotypic synonym) ATCC 15722 | CBS 785.72 | DSM 40595,
AJ621606 | IMRU 3751 | ISP 5595 | JCM 3045 | JCM 4805 | RIA 1445
Streptomyces olivaceoviridis AL (Preobrazhenskaya and Ryabova 1957)
Pridham et al. 1958 ATCC 19794 | ATCC 23630 | ATCC 25478 | CBS
888.69 | DSM 40334 | NBRC 13066 | IMET 43128 | INA 11584 | ISP
5334 | RIA 1258
Streptomyces olivaceus AL (Waksman 1923) Waksman and Henrici 1948
ATCC 3335 | CBS 281.30 | CBS 546.68 | CUB 508 | DSM 40072,
AY094370 | ETH 14308 | NBRC 12805 | IMET 40350 | IMRU 3335 |

ISP 5072 | JCM 4402 | KCC S-0402 | RIA 1073
Streptomyces olivochromogenes AL (Waksman 1923) Waksman and Henrici
272
11886 | ETH 14310 | ETH 9517 | NBRC 13067 | IMET 40352 | IMRU
3336 | ISP 5451 | KCC S-0163 | KCC S-0500 | NRRL B-1341 | RIA 1259
Streptomyces olivomycini VP (Gauze and Sheshnikova 1986) Witt and
Stackebrandt 1991 <- Streptoverticillium olivomycini (basonym)
INA 16749
Streptomyces olivoreticuli subsp. olivoreticuli VP (Arai et al. 1957) Witt
and Stackebrandt 1991 <- Streptoverticillium olivoreticuli subsp. oli-
voreticuli (basonym) ATCC 23943 | CBS 927.68 | DSM 40105 | IFM
1018 | NBRC 12896 | ISP 5105 | JCM 4176 | JCM 4657 | RIA 1122
Streptomyces olivoreticuli subsp. cellulophilus VP (Locci and Scho?eld
1989) Witt and Stackebrandt 1991 <- Streptoverticillium olivoreticuli
subsp. cellulophilum (basonym) MK-33 | ATCC 21632 | DPDU 0278,
X53166, Stm.olivor | DSM 41687
Streptomyces olivoverticillatus VP (Shinobu 1956) Witt and Stackebrandt
1991 <- Streptoverticillium olivoverticillatum (basonym) ATCC
25480 | CBS 890.69 | DSM 40250 | ETH 28537 | NBRC 13068 | ISP
5250 | JCM 4100 | JCM 4501 | NRRL B-1994 | OEU 383 | RIA 1260 |
RIA 551
Streptomyces olivoviridis AL (Kuchaeva et al. 1960) Pridham 1970 ATCC
1475 | ISP 5211 | JCM 4432 | JCM 4658 | RIA 1157 | RIA 661
Streptomyces omiyaensis AL Umezawa and Okami 1950 ATCC 27454 | CBS
| NRRL B-1587 | RIA 1410
Streptomyces orinoci VP (Cassinelli et al. 1967) Witt and Stackebrandt 1991

<- Streptoverticillium orinoci (basonym) 1882 FI | ATCC 23202 | CBS
767.72 | DSM 40571 | NBRC 13466 | IPV 1901 | ISP 5571 | JCM 4546 |
JCM 4807 | NRRL B-3379 | RIA 1427
Streptomyces pactum AL Bhuyan et al. 1962 UC 2432 | ATCC 12434 | CBS
461.69 | CBS 734.72 | DSM 40530 | DSM 41250 | NBRC 13433 | IMET
43357 | ISP 5530 | JCM 4288 | JCM 4809 | KCC S-0288 | KCC S-0809 |
NCIB 9445 | NRRL 2939 | RIA 1394
Streptomyces paracochleatus VP Nakagaito et al. 1993 -> Kitasatospora
paracochleata M-13 | ATCC 51236 | DSM 41656 | NBRC 14769,
U93328
Streptomyces paradoxus VP (Krasilnikov and Yuan 1961) Goodfellow et
al. 1986 <- Actinosporangium violaceum (basonym) ATCC 15813 |
DSM 43350 | IMET 43491 | INMI 3180 | JCM 3052 | KCC 3052 | KCC
A-0052 | RIA 655
Streptomyces parvisporogenes VP (Locci et al. 1969) Witt and Stackebrandt
1991 <- Streptoverticillium parvisporogenes (basonym) BA-3572 |
ATCC 12568 | CBS 695.72 | DSM 40473 | NBRC 13394 | ISP 5473 | KCC
S-0694 | KCC S-0812 | RIA 1355
Streptomyces parvulus AL Waksman and Gregory 1954 ATCC 12434 |
ATCC 19796 | CBS 548.68 | DSM 40048 | ETH 12648 | ETH 14318 |
ICMP 156 | NBRC 13193 | IMET 41380 | IMRU 3677 | ISP 5048 | JCM
4068 | NCIMB 11240 | NRRL B-1628 | RIA 1075 | RIA 307
Streptomyces parvus AL (Krainsky 1914) Waksman and Henrici 1948
ATCC 12433 | CBS 427.61 | DSM 40348 | ETH 12647 | IMRU 3686 |
ISP 5348 | NRRL B-1455
Streptomyces peucetius AL Grein et al. 1963 IMI 101335 | ATCC 29050
| CBS 376.71 | DSM 40754 | DSM 41191 | IMRU 3868 | JCM 9920,
AB045887 | NCIB 10972

Streptomyces phaeochromogenes AL (Conn 1917) Waksman 1957 ATCC
23945 | ATCC 3338 | CBS 929.68 | DSM 40073, AF500071 | ETH 20197
273
NBRC 12898 | IMET 40355 | IMRU 3338 | ISP 5073 | KCC S-0070 |
|
KCC S-0659 | NCIMB 8505 | RIA 1119

Streptomyces phaeofaciens AL Maeda et al. 1952 RRL B-1516 | ATCC
15034 | CBS 426.64 | CBS 637.72 | DSM 40367 | NBRC 13372 | ISP 5367
| JCM 4125 | JCM 4814 | RIA 1333 | RIA 753
Streptomyces phaeopurpureus AL Shinobu 1957 ATCC 23946 | ATCC

23947 | CBS 930.68 | DSM 40125 | ETH 24482 | NBRC 12899 | ISP
5125 | KCC S-0101 | KCC S-0660 | OEU 146 | RIA 1128
Streptomyces phaeoviridis AL Shinobu 1957 ATCC 23947 | CBS 931.68 |
DSM 40285 | NBRC 12900 | ISP 5285 | KCC S-0102 | KCC S-0659 |
NRRL B-2258 | OEU 503 | RIA 1199
Streptomyces phosalacineus VP (Takahashi et al. 1985) Wellington et al.
1992 <- Kitasatospora phosalacinea (basonym) -> Kitasatospora
phosalacinea KA-338 | DSM 43860, M55223, Kts.phosal | NBRC
14372 | JCM 2574 | JCM 3340, U93330 | NRRL B-16230 461
Streptomyces pilosus AL Ettlinger et al. 1958 ATCC 19797 | CBS 594.68 |
DSM 40097 | ETH 11686 | NBRC 12807 | ISP 5097 | KCC S-0403 | RIA
1076
Streptomyces platensis AL Tresner and Backus 1956 M5-5353 | ATCC
13865 | ATCC 23948 | CBS 310.56 | CBS 932.68 | DSM 40041 | DSM
41241 | NBRC 12901 | NBRC 14007 | ISP 5041 | JCM 4189, AB045882
| JCM 6442 | KCC S-0189 | KCC S-0662 | NRRL 2364 | RIA 1110
Streptomyces plicatus AL Pridham et al. 1958 PD 04918 | ATCC 25483 |

CBS 911.69 | DSM 40319 | ETH 31505 | NBRC 13071 | ISP 5319 | JCM
4504 | NRRL 2428 | RIA 1263
Streptomyces pluricolorescens AL Okami and Umezawa 1961 91-T1-1 |
ATCC 19798 | CBS 550.68 | CUB 141 | DSM 40019 | ETH 24329 | NBRC
12808 | ISP 5019 | JCM 4302 | JCM 4602 | RIA 1077
Streptomyces polychromogenes AL Hageman et al. 1964 T 4473 | ATCC
12595 | ATCC 25484 | CBS 311.56 | CBS 912.69 | DSM 40316 | ETH
23877 | ETH 31545 | NBRC 13072 | ISP 5316 | KCC S-0236 | NRRL
B-12233 | RIA 1264 | RIA 362
Streptomyces poonensis AL (Thirumalachar 1960) Pridham 1970 = Chainia
poonensis (homotypic synonym) ATCC 15723 | CBS 295.66 | CBS
786.72 | DSM 40596 | NBRC 13485 | IMET 43406 | IMRU 3752 | ISP
5596 | RIA 1446
Streptomyces praecox AL (Millard and Burr 1926) Waksman 1953 ATCC
25485 | ATCC 3374 | CBS 104.27 | CBS 913.69 | DSM 40393 | ETH
13078 | ETH 20733 | NBRC 13073 | IMET 40356 | IMRU 3374 | ISP 5393
| KCC S-0506 | RIA 1265 | RIA 66
Streptomyces prasinopilosus AL Ettlinger et al. 1958 ATCC 19799 | CBS

551.68 | DSM 40098 | ETH 13675 | NBRC 12809 | ISP 5098 | JCM 4207
| JCM 4404 | RIA 1078
Streptomyces prasinosporus AL Tresner et al. 1966 BD 278 | ATCC 17918 |

Streptomyces prasinus AL Ettlinger et al. 1958 ATCC 19800 | CBS 552.68 |
DSM 40099 | ETH 13815 | NBRC 12810 | ISP 5099 | KCC S-0192 | KCC
S-0603 | RIA 1079
Streptomyces prunicolor AL (Ryabova and Preobrazhenskaya 1957) Prid-
ham et al. 1958 ATCC 25487 | CBS 915 | DSM 40335 | NBRC 13075 |
IMET 43129 | INA 8805/64 | ISP 5335 | RIA 1267
46 1
K itasato sp oria ph osala cinea wa s transferred to S trepto my ces as S . pho salac in eus . Su bs eque ntly, Zha ng et al. (1997 ) ha ve p ro pos ed the
revival of the ge nus K ita sa tospora and the specie s K. pho sa lac in ea.
274
Streptomyces psammoticus AL Virgilio and Hengeller 1960 P 19 | S 4623/33

| ATCC 14125 | ATCC 25488 | CBS 175.61 | DSM 40341 | NBRC 13076
| ISP 5341 | JCM 4434 | KCC S-0434 | RIA 1268 | RIA 832
Streptomyces pseudoechinosporeus VP (Konev et al. 1967) Goodfellow et

al. 1986 <- Microellobosporia grisea (basonym) ATCC 19618 | CUB
161 | DSM 43035 | NBRC 12518 | KCC 3066 | KCC A-0066
Streptomyces pseudogriseolus AL Okami and Umezawa 1955 H-16C |
JCM 4071 | JCM 4663 | NCIB 9411 | NRRL B-3288 | RIA 1106
Streptomyces pseudovenezuelae AL (Kuchaeva et al. 1961) Pridham 1970
IMRU 3774 | ISP 5212, AJ399481, AJ399481 | KCC S-0405 | RIA 1158
| RIA 742
Streptomyces pulveraceus AL Shibata et al. 1961 45449 | ATCC 13875 |

DSM 41657 | NBRC 3855 | JCM 7545
Streptomyces puniceus AL Patelski 1951 PF 1314-5 | ATCC 19801 | CBS
308.55 | CBS 553.68 | DSM 40083 | NBRC 12811 | ISP 5083 | JCM 4406
| NRRL 2423 | RIA 1080
Streptomyces puniciscabiei VP Park et al. 2003 S77, AF361785 | KACC

20253 | LMG 21391
Streptomyces purpeofuscus AL Yamaguchi and Saburi 1955 H-5080 |
KCC S-0156 | KCC S-0509 | NRRL B-1817 | RIA 1197
Streptomyces purpurascens AL Lindenbein 1952 ATCC 25489 | CBS
917.69 | DSM 40310, AJ310925 | NBRC 13077 | ISP 5310 | JCM 4509,
AB045888 | RIA 1269
Streptomyces purpureus VP (Matsumae and Hata 1968) Goodfellow et al.
1986 <- Kitasatoa purpurea (basonym) KA-279 | ATCC 27787 | DSM
43362 | NBRC 13927 | JCM 3172 | KCC 3172 | NRRL B-5403
Streptomyces purpurogeneiscleroticus AL Pridham 1970 = Chainia pur-
purogena (homotypic synonym) ATCC 19348 | DSM 43156,
AJ621604 | DSM 40271
Streptomyces racemochromogenes AL Sugai 1956 229 | ATCC 23954 | CBS
937.68 | DSM 40194 | NBRC 12906 | ISP 5194 | JCM 4407 | RIA 1147
Streptomyces rameus AL Shibata 1959 154 | ATCC 21273 | DSM 41685 | JCM
5064 | KCC S-1064
Streptomyces ramulosus AL Ettlinger et al. 1958 ATCC 19802 | ATCC 6860
| CBS 554.68 | DSM 40100 | ETH 17653 | NBRC 12812 | ISP 5100 | KCC
S-0193 | RIA 1081

Streptomyces rangoonensis AL (Erikson 1935) Pridham et al. 1958 ATCC
25490 | ATCC 6860 | CBS 918.69 | DSM 40452 | NBRC 13078 | IMET
41357 | ISP 5452 | NCTC 1678 | RIA 1270
Streptomyces recifensis AL (Goncalves de Lima et al. 1955) Falcao de
Morais et al. 1957 AX-18 | ATCC 19803 | CBS 555.68 | DSM 40115 |
NBRC 12813 | ISP 5115 | RIA 1082
Streptomyces rectiverticillatus VP (Krassilnikov and Yuan 1965) Witt
and Stackebrandt 1991 <- Streptoverticillium rectiverticillatum
(basonym) ATCC 19845 | ATCC 25491 | CBS 951.69 | DSM 40436 |
NBRC 13079 | INMI 380 | ISP 5436 | RIA 1271
Streptomyces rectiviolaceus VP Sveshnikova 1986 ATCC 43690 | DSM
41459 | INMI 563 | VKM 282
Streptomyces regensis AL Gupta et al. 1963 RRL X-5263 | ATCC 27461 |
Streptomyces resistomyci?cus AL Lindenbein 1952 ATCC 19804 | CBS
556.68 | DSM 40133, AJ310926, AJ310926 | ETH 23893 | ETH 32680
275
| NBRC 12814 | IMRU 3658 | ISP 5133 | JCM 4409 | NRRL 2290 | RIA
1083
Streptomyces reticuliscabiei VP Bouchek-Mechiche et al. 2000 CFBP
4531, AJ007428 | ICMP 13716 | NCPPB 4041
Streptomyces rhizosphaericus VP Sembiring et al. 2001 A10P1, AJ391834
| DSM 41760 | NCIMB 13674
Streptomyces rimosus subsp. rimosus AL Sobin et al. 1953 FD 10326 |

ATCC 10970 | ATCC 23955 | CBS 437.51 | CBS 938.68 | CUB 205 | DSM
40260 | DSM 41132 | ETH 20240 | ICMP 919 | NBRC 12907 | IMRU
3558 | ISP 5260 | JCM 4073 | JCM 4667, AB045883 | NCIMB 8229 |
NRRL 2234 | RIA 1185 | RIA 606
Streptomyces rimosus subsp. paromomycinus AL Coffey et al. 1959 ATCC
14827 | DSM 41429, AJ621610 | IPV 1982 | JCM 4541 | KCC S-0541 |
NRRL 2455
Streptomyces rishiriensis AL Kawaguchi et al. 1965 404Y3 | ATCC 14812 |
4821 | RIA 1368
Streptomyces rochei AL Berger et al. 1953 X-15 | ATCC 10739 | ATCC
19245 | CBS 224.46 | CBS 939.68 | CUB 519 | DSM 40231 | ETH 13471 |
ETH 20727 | NBRC 12908 | IMET 41386 | IMRU 3602 | ISP 5231 | JCM
4074 | JCM 4668 | NRRL B-1559 | RIA 1171
Streptomyces roseiscleroticus AL Pridham 1970 = Chainia rosea (homo-
typic synonym) HACC-144 | ATCC 17755 | CBS 226.65 | CBS 664.72
| DSM 40303 | NBRC 13002 | NBRC 13363 | IMET 43586 | ISP 5303 |
RIA 1324 | RIA 887

Streptomyces roseodiastaticus AL (Duche 1934) Waksman 1953 FH 2454
| CBS 102.34 | DSM 41703 | ETH 16827 | ETH 31566 | NBRC 15457 |
JCM 4295 | KCC S-0295 | NRRL B-1906

Streptomyces roseo?avus AL Arai 1951 320 | ATCC 13167 | ATCC 19805 |
CBS 740.72 | DSM 40536 | DSM 41430 | NBRC 13439 | IMRU 3672 |
ISP 5536 | JCM 4824 | KCC S-0824 | NRRL B-1563 | NRRL B-2789 |
RIA 1400
Streptomyces roseofulvus AL (Preobrazhenskaya 1957) Pridham et al. 1958
ATCC 19921 | CBS 557.68 | DSM 40172 | NBRC 13194 | INA 14535 |
ISP 5172 | KCC S-0334 | KCC S-0605 | RIA 1084

Streptomyces roseolilacinus AL (Preobrazhenskaya and Sveshnikova 1957)
Pridham et al. 1958 ATCC 19806 | ATCC 19922 | CBS 264.66 | CBS
558.68 | CUB 521 | DSM 40173 | ETH 28444 | NBRC 12815 | INA 14250
| ISP 5173 | KCC S-0335 | RIA 1085
Streptomyces roseolus AL (Preobrazhenskaya and Sveshnikova 1957) Prid-

ham et al. 1958 ATCC 23210 | CBS 559.68 | DSM 40174 | ETH 24181
| NBRC 12816 | INA 5449/54 | ISP 5174 | KCC S-0411 | RIA 1086
Streptomyces roseosporus AL Falcao de Morais and Dalia Maia 1961 IAUR

4192 | ATCC 23958 | CBS 941.68 | DSM 40122 | NBRC 12910 | ISP 5122
| JCM 4412 | RIA 1125
Streptomyces roseoverticillatus VP (Shinobu 1956) Witt and Stackebrandt

1991 <- Streptoverticillium roseoverticillatum (basonym) = Strepto-
myces baldaccii (junior heterotypic synonym) = Streptomyces biver-
ticillatus (junior heterotypic synonym) = Streptomyces fervens subsp.
fervens (junior heterotypic synonym) = Streptomyces fervens subsp.
melrosporus (junior heterotypic synonym) = Streptomyces spitsber-
gensis (junior heterotypic synonym) ATCC 19807 | CBS 560.68 | DSM
40039 | ETH 24434 | ETH 24484 | NBRC 12817 | IPV 2003 | ISP 5039 |
JCM 4103 | KCC S-0103 | KCC S-0607 | NRRL B-1993 | RIA 1087 | RIA
552
276
Streptomyces roseoviolaceus AL (Sveshnikova 1957) Pridham et al. 1958

ATCC 25493 | CBS 953.69 | DSM 40277 | NBRC 13081 | INA 1020/54
| ISP 5277, AJ399484 | RIA 1273
Streptomyces roseoviridis AL (Preobrazhenskaya 1957) Pridham et al. 1958

ATCC 23959 | CBS 942.68 | DSM 40175 | NBRC 12911 | INA 3617 |
ISP 5175 | RIA 1135

Streptomyces ruber VP (Thirumalachar 1955) Goodfellow et al. 1986 <-
Chainia rubra (basonym) JCM 3131 | HACC-143 | ATCC 17754 | CBS
228.65 | DSM 40304 | NBRC 14600 | ISP 5304 | KCC 3131 | NCIB 10983
Streptomyces rubiginosohelvolus AL (Kudrina 1957) Pridham et al. 1958
ATCC 19926 | ATCC 23960 | CBS 943.68 | DSM 40176 | ETH 28494 |
NBRC 12912 | INA 10/53 | ISP 5176 | JCM 4415 | KCC S-0415 | RIA
1136
Streptomyces rubiginosus AL (Preobrazhenskaya et al. 1957) Pridham et al.
28445 | NBRC 12913 | INA 11852 | ISP 5177 | JCM 4416 | KCC S-0416
| RIA 1137
Streptomyces rubrogriseus VP Terekhova 1986 ATCC 43691 | DSM 41477,

AF503501 | INA 2626 | JCM 6927
Streptomyces rutgersensis subsp. rutgersensis AL (Waksman and Curtis
1916) Waksman and Henrici 1948 ATCC 19809 | ATCC 3350 | CBS
138.20 | CBS 562.68 | DSM 40077, Z76688, Stm.rutger | ETH 17541 |
ETH 28343 | NBRC 12819 | IMRU 3350 | ISP 5077 | JCM 4082 | JCM
4608 | KCC S-0082 | KCC S-0608 | NRRL B-1256 | RIA 1089
Streptomyces rutgersensis subsp. castelarensis AL Cercos 1954 BJ-608 |
ATCC 15191 | CBS 309.55 | DSM 40830, AY508511 | IMRU 3559
Streptomyces salmonis VP (Baldacci et al. 1966) Witt and Stackebrandt 1991
<- Streptoverticillium salmonis (basonym) DPDU 0098, X53169,
Stm.salmon | DSM 40895 | ETH 27040 | ETH 28397 | IPV 2019 | NRRL
B-1472
Streptomyces sampsonii AL (Millard and Burr 1926) Waksman 1953 ATCC
25495, D63871, Stm.sampsn | CBS 955.69 | DSM 40394, Z76680,
Stm.samps2 | ETH 23691 | NBRC 13083 | IMRU 3371 | ISP 5394 | JCM
4515 | KCC S-0515 | RIA 1275
Streptomyces sannanensis VP Iwasaki et al. 1981 KC-7038 | ATCC 31530 |
DSM 41705 | FERM-P 4388 | NBRC 14239 | JCM 9651
Streptomyces sapporonensis VP (Locci and Scho?eld 1989) Witt and Stacke-
brandt 1991 <- Streptoverticillium sapporonense (basonym) ATCC
21532 | DSM 41493
Streptomyces scabiei VP Lambert and Loria 1989 RL-34 | ATCC 49173,
D63862, Stm.scabie | DSM 41658 | ICMP 12542 | JCM 7914
Streptomyces scabrisporus VP Ping et al. 2004 KM-4927, AB030585 | JCM
11712 | NRRL B-24202
Streptomyces sclerotialus AL Pridham 1970 = Chainia antibiotica (homo-
typic synonym) ATCC 15721 | CBS 167.62 | CBS 657.72 | DSM 40269
| DSM 43032, AJ621608 | NBRC 12246 | NBRC 13356 | NBRC 13904
| IMRU 3750 | ISP 5269 | JCM 3039 | JCM 4828 | KCC A-0039 | KCC
S-0828 | RIA 1317

Streptomyces scopiformis VP Li et al.2002 A25, AF184081 | AS 4.1331 |
LMG 20251
Streptomyces seoulensis VP Chun et al. 1997 IMSNU 21266, Z71365,
Stm.seouln
Streptomyces septatus VP (Locci et al. 1969) Witt and Stackebrandt 1991 <-
Streptoverticillium septatum (basonym) M-741 | ATCC 27464 | CBS
277
772.72 | DSM 40577 | NBRC 13471 | ISP 5577 | KCC S-0547 | KCC
S-0829 | NRRL 2974 | RIA 1432
Streptomyces setae VP (Omura et al. 1983) Wellington et al. 1992 <-
Kitasatospora setae (basonym) -> Kitasatospora setae KM-6054 |
ATCC 33774 | DSM 43861 462 , M55220, Kts.setae1 | NBRC 14216 | JCM
3304 | KCC A-0304
Streptomyces setonii AL (Millard and Burr 1926) Waksman 1953 ATCC
25497, D63872, Stm.setoni | CBS 105.72 | CBS 957.69 | DSM 40395
| ICMP 12543 | NBRC 13085 | NBRC 13085 | IMRU 3375 | ISP 5395 |
JCM 4226 | JCM 4516 | RIA 1277

Streptomyces showdoensis AL Nishimura et al. 1964 Z-452 | ATCC 15105 |
4830 | RIA 1378
Streptomyces sindenensis AL Nakazawa and Fujii 1957 ATCC 23963 | CBS
RIA 1181
Streptomyces sioyaensis AL Nishimura et al. 1961 ATCC 13989 | H-690 |
ISP 5032 | JCM 4418 | RIA 1090
Streptomyces somaliensis AL (Brumpt 1906) Waksman and Henrici 1948
IP733 | ATCC 33201 | DSM 40738, AJ007403 | IMRU 1274
Streptomyces sparsogenes AL Owen et al. 1963 UC 2474 | ATCC 25498 |
4517 | LMG 5985 | NCIB 9449 | NRRL 2940, AJ391817 | RIA 1278
Streptomyces spectabilis AL Mason et al. 1961 ATCC 27465 | CBS 725.72
| DSM 40512 | NBRC 13424 | ISP 5512 | JCM 4308 | NRRL 2494 | RIA
1385
Streptomyces speibonae VP Meyers et al. 2003 PK-Blue, AF452714 | ATCC
BAA-411 | DSM 41797
Streptomyces speleomycini VP Preobrazhenskaya and Szabo 1986 B-23
Streptomyces spheroides AL Wallick et al. 1956 = Streptomyces caeruleus
(senior heterotypic synonym) MA-319 | ATCC 23965 | CBS 491.62 |
CBS 948.68 | DSM 40292 | NBRC 12917 | ISP 5292 | JCM 4252 | NRRL
2449 | RIA 1200, | RIA 700
Streptomyces spinoverrucosus VP Diab and Al-Gounaim 1982 Diab
163MA | MS 1488 | ATCC 33692 | DSM 41648 | NBRC 14228 | NBRC
14250 | JCM 5077 | KCC S-1077 | NCIB 11666
Streptomyces spiralis VP (Falcao de Morais 1970) Goodfellow et al. 1986
<- Elytrosporangium spirale (basonym) Mc 9H | ATCC 25664 | DSM
43836 | NBRC 14215 | JCM 3302 | KCC 3302
Streptomyces spiroverticillatus AL Shinobu 1958 ATCC 19811 | CBS
564.68 | DSM 40036 | NBRC 12821 | IMET 42050 | ISP 5036 | OEU 508
| RIA 1091 | RIA 549
Streptomyces spitsbergensis VP Wieczorek et al. 1993 = Streptomyces

roseoverticillatus (senior heterotypic synonym) PCM 2404 | S-2
Streptomyces sporocinereus VP Preobrazhenskaya 1986 DSM 41460 | INMI
32 | VKM 312
Streptomyces sporoclivatus VP Preobrazhenskaya 1986 DSM 41461 | INMI
97 | VKM 315
Streptomyces spororaveus VP Preobrazhenskaya 1986 DSM 41462 | INMI
101 | VKM 318
Streptomyces sporoverrucosus VP Preobrazhenskaya 1986 DSM 41463 |
INMI 15 | VKM 321
46 2
Kitasatosporia set ae was tran sfe rred to S tre ptom yces a s S. s etae . S ubs equ ently, Zh ang et al. (199 7) h ave p ro pos ed the rev iv al of the
ge nus K ita sa tospora and th e spe cies K . set ae.
278
Streptomyces stelliscabiei VP Bouchek-Mechiche et al. 2000 CFBP 4521,

AJ007429 | ICMP 13715 | NCPPB 4040
Streptomyces stramineus VP Labeda et al. 1997 NRRL 12292
Streptomyces subrutilus AL Arai et al. 1964 ATCC 27467 | CBS 689.72 |
DSM 40445, X80825, Stm.subrut | IFM 713 | NBRC 13388 | ISP 5445 |
JCM 4695 | JCM 4834 | RIA 1349
Streptomyces sulfonofaciens VP Miyadoh et al. 1983 SF-2103 | ATCC
31892 | DSM 41679 | NBRC 14260 | JCM 5069 | KCC S-1069
Streptomyces sulphureus AL (Gasperini 1894) Waksman 1953 ATCC 27468
| CBS 646.72 | DSM 40104 | NBRC 13345 | IMET 40623 | IPV 510 | ISP
5104 | NRRL B-1627 | RIA 1306

Streptomyces syringium VP (Konev 1986) Witt and Stackebrandt 1991 <-
Streptoverticillium syringium (basonym) DSM 41502 | LIA-0725
Streptomyces tanashiensis AL Hata et al. 1952 ATCC 23967 | CBS 165.54 |
4086 | JCM 4671 | NRRL B-1692 | RIA 1148
Streptomyces tauricus VP Sveshnikova 1986 ATCC 27470 | CBS 757.72 |
DSM 40560 | NBRC 1345 | IMET 43541 | INA 8173 | ISP 5560 | JCM
4837, AB045879, AB045879 | RIA 1417
Streptomyces tendae AL Ettlinger et al. 1958 ATCC 19812, D63873,
Stm.tnedae | CBS 565.68 | DSM 40101 | ETH 11313 | NBRC 12822 |
IMET 40459 | ISP 5101 | JCM 4149 | RIA 1092 | RIA 534
Streptomyces termitum AL Duche et al. 1951 ATCC 25499 | CBS 959.69 |
DSM 40329 | NBRC 13087 | IMET 43127 | ISP 5329 | RIA 1279
Streptomyces thermoalcalitolerans VP Kim et al. 1999 TA56, AJ000284,
Stm.thalca | DSM 41741
Streptomyces thermoautotrophicus VP Gadkari et al. 1991 UBT1 | DSM
41605
Streptomyces thermocarboxydovorans VP Kim et al. 1998 AT52, U94489 |
DSM 44296, U94489
Streptomyces thermocarboxydus VP Kim et al. 1998 AT37 | DSM 44293,
U94490, Stm.thcarb
Streptomyces thermocoprophilus VP Kim et al. 2000 B19, AJ007402 | DSM
41700
Streptomyces thermodiastaticus AL (Bergey et al. 1923) Waksman 1953
ATCC 27472 | CBS 769.72 | CUB 387 | DSM 40573, Z68101,
Stm.thdias | NBRC 13468 | ISP 5573 | JCM 4840, AB018095,

Stm.thdia2 | JCM 4840, AB018096, Stm.thdia3 | RIA 1429
Streptomyces thermogriseus VP Xu et al. 1998 Y-14046 | CCTCC
AA97014, AF056714, Stm.thgris
Streptomyces thermolineatus VP Goodfellow et al. 1988 A1484 | K47 | DSM
41451, Z68097, Stm.thline | NBRC 14750 | JCM 6307
Streptomyces thermonitri?cans AL Desai and Dhala 1967 = Streptomyces
thermovulgaris (senior heterotypic synonym) ATCC 23385 | DSM
40579, Z68098, Stm.thvul2 | IMET 43405
Streptomyces thermospinosisporus VP Kim and Goodfellow 2002 AT10,
AF333113 | DSM 41779 | KCTC 9909
Streptomyces thermoviolaceus subsp. thermoviolaceus AL Henssen 1957
R-77 | ATCC 19283 | CBS 278.66 | CBS 688.72 | DSM 40443, Z68096,
Stm.thvio2 | NBRC 13387 | IMET 43353 | ISP 5443 | RIA 1348
Streptomyces thermoviolaceus subsp. apingens AL Henssen 1957
MB-R89(A34) ATCC 19994 CBS 140.67 | DSM 41392, Z68095,
| |
Stm.thviol | ETH 25786 | JCM 4312 | NCIMB 10077

Streptomyces thermovulgaris AL Henssen 1957 = Streptomyces thermonitri-
?cans (junior heterotypic synonym) R-10 | ATCC 19284 | CBS 276.66
279
| CBS 643.69 | DSM 40444, Z68094, Stm.thvulg | NBRC 13089 | ISP

5444 | KCC S-0240 | KCC S-0520 | RIA 1281
Streptomyces thioluteus VP (Okami 1952) Witt and Stackebrandt 1991 <-
Streptoverticillium thioluteum (basonym) ATCC 12310 | CBS 642.72
| DSM 40027 | DSM 41486 | NBRC 13341 | NBRC 3364 | ISP 5027 | JCM
4087 | JCM 4182 | RIA 1302

Streptomyces torulosus AL Lyons and Pridham 1971 ATCC 29340 | CBS
801.71 | DSM 40894 | DSM 41249 | IMRU 3950 | JCM 4872 | NRRL
B-3889
Streptomyces toxytricini AL (Preobrazhenskaya and Sveshnikova 1957)
Pridham et al. 1958 ATCC 19813 | CBS 566.68 | DSM 40178 | NBRC
12823 | INA 13887/54 | ISP 5178 | KCC S-0421 | RIA 1093
Streptomyces tricolor AL (Wollenweber 1920) Waksman 1961 FH 2456 |
CBS 103.21 | DSM 41704 | NBRC 15461 | JCM 5065 | KCC S-1065 |
NRRL B-16925
Streptomyces tubercidicus AL Nakamura 1961 ATCC 25502 | CBS 644.69 |
DSM 40261, AJ621612 | NBRC 13090 | IMET 43517 | ISP 5261 | JCM
4054 | RIA 1282
Streptomyces tuirus AL Albert and Malaquias de Querioz 1963 IAUR 3121
| ATCC 19007 | CBS 719.72 | DSM 40505, AF503493 | NBRC 13418 |
ISP 5505 | JCM 4846 | RIA 1379

Streptomyces turgidiscabies VP Miyajima et al. 1998 ATCC 700248 |
NBRC 16080 | SY9113
Streptomyces umbrinus AL (Sveshnikova 1957) Pridham et al. 1958 ATCC
1703 | ISP 5278 | RIA 1283
Streptomyces variabilis AL (Preobrazhenskaya et al. 1957) Pridham et al.
12825 | IMET 42059 | INA 5557/54 | ISP 5179 | RIA 1095
Streptomyces variegatus VP Sveshnikova and Timuk 1986 ATCC 43696 |
DSM 41464 | INA T-511 | JCM 6930 | VKM 846
Streptomyces varsoviensis AL Kurylowicz and Woznicka 1967 13-1 | ATCC
14631c | ATCC 25505 | CBS 357.64 | CBS 647.69 | CUB 116 | DSM
40346 | DSM 40677 | NBRC 13093 | IMET 43351 | ISP 5346 | JCM 4303
| JCM 4523 | NCIB 9522 | RIA 1285
Streptomyces vastus AL Szabo and Marton 1958 A-10 | ATCC 25506 | CBS
290.60 | CBS 648.69 | DSM 40309 | NBRC 13094 | ISP 5309 | RIA 1286
Streptomyces venezuelae AL Ehrlich et al. 1948 A-65 | PD 04745 | ATCC
10712 | ATCC 25508 | CBS 650.69 | DSM 40230 | DSM 41109 | ETH
26169 | NBRC 12595 | NBRC 13096 | IMET 41356 | IMRU 3534 | IMRU
3625 | ISP 5230 | JCM 4526, AB045890 | KCC S-0526 | NIHJ 38 | NRRL
2277 | RIA 1288 | VKM Ac-589
Streptomyces vinaceus AL Jones 1952 8542-1 | ATCC 27476 | CBS 726.72 |
DSM 40515 | ETH 28394 | NBRC 13425 | ISP 5515 | NRRL 2382 | RIA
1386
Streptomyces vinaceusdrappus AL Pridham et al. 1958 D-13 | UC 2007
| ATCC 25511 | CBS 653.69 | DSM 40470 | NBRC 13099 | ISP 5470 |
NRRL 2363 | RIA 1291

Streptomyces violaceochromogenes AL (Ryabova and Preobrazhenskaya
1957) Pridham 1970 ATCC 19932 | ATCC 25512 | CBS 654.69 | DSM
40181 | NBRC 13100 | INA 425 | ISP 5181 | RIA 1292
Streptomyces violaceolatus AL (Krassilnikov et al. 1965) Pridham 1970
ATCC 19847 | ATCC 25513 | CBS 655.69 | DSM 40438, AF503497 |
NBRC 13101 | INMI 4 | ISP 5438 | RIA 1293
280
Streptomyces violaceorectus AL (Ryabova and Preobrazhenskaya 1957)

13102 | IMET 43520 | INA 506 | ISP 5279 | RIA 1294
Streptomyces violaceoruber AL (Waksman and Curtis 1916) Pridham 1970
ATCC 14980 | ATCC 19816 | CBS 569.68 | DSM 40049 | ETH 14306 |
ETH 9447 | NBRC 12826 | IMET 40270 | IMRU 3030 | ISP 5049 | JCM
4423 | RIA 1069
Streptomyces violaceorubidus VP Terekhova 1986 ATCC 43697 | DSM
41478 | INA 770 | JCM 6931
Streptomyces violaceus AL (Rossi Doria 1891) Waksman 1953 emend.
Lanoot et al. 2002 = Streptomyces violatus (junior heterotypic
synonym) ATCC 15888 | ATCC 25515 | CBS 657.69 | DSM 40082 |
NBRC 13103 | IMET 43085 | INMI 1 | ISP 5082 | JCM 4533 | RIA 1295
| RIA 656
Streptomyces violaceusniger AL (Waksman and Curtis 1916) Pridham et al.

1958 ATCC 27477 | CBS 760.72 | DSM 40563 | NBRC 13459 | ISP
5563 | NRRL B-1476, AJ391822 | RIA 1420
Streptomyces violarus AL (Artamonova and Krassilnikov 1960) Pridham
13104 | INMI 1212 | ISP 5205, AJ399477, AJ399477 | JCM 4237 | JCM
4534 | NIHJ 493 | RIA 1296 | RIA 157
Streptomyces violascens AL (Preobrazhenskaya and Sveshnikova 1957)
12920 | IMET 42061 | INA 3959/54 | ISP 5183 | JCM 4424 | RIA 1138
Streptomyces violatus AL (Artamonova and Krassilnikov 1960) Pridham
1970 = Streptomyces violaceus (senior heterotypic synonym) IA
1205 | ISP 5209, AJ399480, AJ399480 | RIA 708
Streptomyces violens VP (Kalakoutskii and Krassilnikov 1960) Goodfellow
et al. 1987 <- Chainia violens (basonym) ATCC 15898 | CBS 451.65
| CBS 787.72 | DSM 40597, AJ621605 | NBRC 13486 | IMET 43407 |
INMI 1212 | ISP 5597 | RIA 1447 | RIA 565

Streptomyces virens VP Gauze and Sveshnikova 1986 DSM 41465 | INA
3831 | VKM 833
Streptomyces virginiae AL Grundy et al. 1952 NA 255-B8 | ATCC 19817
| CBS 291.60 | CBS 570.68 | DSM 40094 | NBRC 12827, D85123,
Stm.virgi7 | NBRC 3729, D85119, Stm.virgi3 | IMRU 3651 | ISP 5094 |

JCM 4425 | NRRL B-1446 | RIA 1097
Streptomyces viridi?avus VP (Locci and Scho?eld 1989) Witt and Stacke-
brandt 1991 <- Streptoverticillium virido?avum (basonym) Y. E.
Konev | ATCC 12631 | CBS 652.72 | DSM 40237 | ETH 24306 | NBRC
13351 | IMRU 3685 | ISP 5237 | JCM 4221 | JCM 4857 | NRRL B-1569
| RIA 1312
Streptomyces viridiviolaceus AL (Ryabova and Preobrazhenskaya 1957)

13359 | INA 5276/56 | ISP 5280 | RIA 1320
Streptomyces viridobrunneus VP Terekhova 1986 DSM 41466 | INMI 300 |
VKM 559
Streptomyces viridochromogenes AL (Krainsky 1914) Waksman and Henrici
1948 ATCC 14920 | CBS 648.72 | DSM 40110 | NBRC 13347 | ISP 5110
| NRRL B-1511 | RIA 1308
Streptomyces viridodiastaticus AL (Baldacci et al. 1955) Pridham et al. 1958

ATCC 25518 | CBS 660.69 | DSM 40249 | NBRC 13106 | IPV 334a | ISP
5249 | RIA 1298
281
Streptomyces viridosporus AL Pridham et al. 1958 4889 | ATCC 27479 | CBS

| NRRL 2414 | RIA 1314
Streptomyces vitaminophilus VP (Shomura et al. 1983) Goodfellow et al.

1986 <- Actinosporangium vitaminophilum (basonym) SF 2080 |
ATCC 31673 | DSM 41686 | FERM-P 5702 | NBRC 14294
Streptomyces wedmorensis VP Preobrazhenskaya 1986 MA-3269 | ATCC
21239 | DSM 41676 | ICMP 12544 | NBRC 14062 | JCM 4937 | KCC
S-0937 | NRRL 3426
Streptomyces werraensis AL Wallhusser et al. 1964 FH 3582 | ATCC 14424
| CBS 437.67 | CBS 705.72 | DSM 40486 | NBRC 13404 | ISP 5486 | JCM
4860 | RIA 1365

Streptomyces willmorei AL (Erikson 1935) Waksman and Henrici 1948
NBRC 13391 | IMET 41387 | IMRU 3332 | ISP 5459 | JCM 486 | KCC
S-0861 | NCTC 1856 | NRRL B-1322 | RIA 1352
Streptomyces xanthochromogenes AL Arishima et al. 1956 689 | ATCC
19818 | CBS 571.68 | DSM 2015 | DSM 40111 | NBRC 12828 | ISP 5111
| JCM 4215 | JCM 4612 | KCC S-0215 | NIHJ 196 | RIA 1098
Streptomyces xanthocidicus AL Asahi et al. 1966 IPCR 51-4 | ATCC 27480

| CBS 770.72 | DSM 40575 | NBRC 13469 | ISP 5575 | JCM 4243 | JCM
4862 | RIA 1430 | RIA 143D

Streptomyces xantholiticus AL (Konev and Tsyganov 1962) Pridham 1970
4282 | JCM 4863 | LIA 1130/12 | RIA 1315
Streptomyces xanthophaeus AL Lindenbein 1952 Wst 70 | ATCC 19819 |
CBS 572.68 | DSM 40134 | NBRC 12829 | ISP 5134 | JCM 4426 | RIA
1099
Streptomyces yeochonensis VP Kim et al. 2004 CN732, AF101415 | IM-
SNU 50114 | KCTC 9926 | NRRL B-24245
Streptomyces yerevanensis VP (Tsyganov et al. 1964) Goodfellow et al.
1986 <- Microellobosporia violacea (basonym) ATCC 43727 | CUB
297 | DSM 43167 | NBRC 12517 | IMET 43616 | JCM 3047 | KCC 304 |
KCC A-0047 | KCC A-0065 | NCIB 9589
Streptomyces yogyakartensis VP Sembiring et al. 2001 C4R3, AJ391827 |
DSM 41766 | NCIMB 13681
Streptomyces yokosukanensis AL Nakamura 1961 IPCR B34 | ATCC 25520
1300
Streptomyces yunnanensis VP Zhang et al. 2003 CGMCC 4.1004 | DSM
41793 | YIM 41004, AF346818
Streptomyces zaomyceticus AL Hinuma 1954 MTHU N-187 | ATCC 27482 |
4179 | JCM 4864 | KCC S-0179 | KCC S-0864 | NRRL B-2038 | RIA 1309
Genus II. Kitasatospora VP 463
Kitasatospora setae VP (T) Omura et al. 1983 -> Streptomyces setae <-
Streptomyces setae (basonym) KM-6054 | ATCC 33774 | DSM 43861,
M55220, Kts.setae1 | NBRC 14216 | JCM 3304 | JCM 3304, U93332,
Kts.setae2 | KCC A-0304
Kitasatospora azatica VP (Nakagaito et al. 1993) Zhang et al. 1997 <-
Streptomyces azaticus (basonym) OS-3256 | ATCC 51237 | DSM
41650 | NBRC 13803 | NBRC 13803, U93312, Kts.azatic
46 3
The typ e sp ecies of K ita sa tospora, K . se tae, w as t ra nsf erre d to S tre ptom yc es , along w ith K . c ys targinea , K. g rise ola , K. m edioc idica , and
K . ph osala cinea, as S. se tae, S. cystargineu s, S. griseo lospo re us, S . m edioc idicu s, an d S . p hos alacineu s, res pec tiv ely. Sub se quen tly, Zhang
et a l. (19 97) hav e propo se d the revival of the g enus Kitasato spo ra and th e sp ec ies K. s eta e, K. c y sta rg ine a, K. g ris eola, K. m edioc idic a, and
K . p hosalacine a.
282
Kitasatospora cheerisanensis VP Chung et al. 1999 YC75, AF050493,

Kts.cheeri | KCTC 2395
Kitasatospora cineracea VP Tajima et al. 2001 SK-3255, AB022875 |
NBRC 16452 | JCM 10915 | NRRL B-23134
Kitasatospora cochleata VP (Nakagaito et al. 1993) Zhang et al. 1997
<- Streptomyces cochleatus (basonym) M-5, U93316, AB022871 |
ATCC 51235 | DSM 41652 | NBRC 14768 | JCM 8799
Kitasatospora cystarginea VP Kusakabe and Isono 1992 -> Streptomyces
cystargineus <- Streptomyces cystargineus (basonym) RK-419 |
ATCC 49931 | DSM 41680 | FERM P-8006 | NBRC 14836 | JCM 7356,
U93318, Kts.cystar
Kitasatospora griseola VP Takahashi et al. 1985 -> Streptomyces grise-
olosporeus <- Streptomyces griseolosporeus (basonym) AM-9660 |
DSM 43859, M55221, Kts.griseo | NBRC 14371 | JCM 3339 | NRRL
B-16229
Kitasatospora kifunensis VP (Nakagaito et al. 1993) Groth et al. 2003 <-
Streptomyces kifunensis (basonym) IFO 15206, AB022874 | NBRC
15206
Kitasatospora mediocidica VP Labeda 1988 -> Streptomyces mediocidi-
cus <- Streptomyces mediocidicus (basonym) LL 80, U93324 | DSM
43929 | NBRC 14789 | NRRL B-16109
Kitasatospora putterlickiae VP Groth et al. 2003 F18-98, AY189976 | DSM
44665 | NCIMB 13932
Kitasatospora niigatensis VP Tajima et al. 2001 SK-3406, AB022876 |
AB022876 | NBRC 16453 | JCM 10916 | NRRL B-24135
Kitasatospora paracochleata VP (Nakagaito et al. 1993) Zhang et al. 1997
<- Streptomyces paracochleatus (basonym) M-13 | ATCC 51236 |
DSM 41656 | NBRC 14769 | NBRC 14769, U93328, Kts.pcochl
Kitasatospora phosalacinea VP Takahashi et al. 1985 -> Streptomyces
phosalacineus <- Streptomyces phosalacineus (basonym) KA-338
| DSM 43860, M55223, Kts.phosal | NBRC 14372 | JCM 2574 | JCM
3340 | JCM 3340, U93330, Kts.phosa2 | NRRL B-16230

Genus III. Streptoverticillium AL
Streptoverticillium baldaccii AL (T) Farina and Locci 1966 -> Streptomyces
baldaccii ATCC 23654 | DPDU 0819, X53164, Stm.rosver
Streptoverticillium abikoense AL (Umezawa et al. 1951) Locci et al. 1969
-> Streptomyces abikoensis AS-803 | ATCC 12766 | CBS 487.62 | DSM
40831, X53168, Stm.abikon | NRRL B-1518 | RIA 497
Streptoverticillium albireticuli AL (Nakazawa 1955) Locci et al. 1969 ->
Streptomyces albireticuli ATCC 19721 | CBS 460.68 | DSM 40051 |
NBRC 12737 | ISP 5051 | JCM 4116 | RIA 1002
Streptoverticillium alboverticillatum VP Locci and Scho?eld 1989 ->
Streptomyces alboverticillatus 1101-A5 | IMC S-0603 | ATCC 29818 |
DSM 41500 | DSM 41678 | NBRC 13861 | IPV 2254 | JCM 5010 | KCC
S-1010
Streptoverticillium album AL Locci et al. 1969 -> Streptomyces lu-
teosporeus BA 3972 | ATCC 33049 | DSM 40833 | JCM 4542 | NRRL
2401
Streptoverticillium ardum AL (De Boer et al. 1961) Locci et al. 1969 ->
Streptomyces ardus UC 2500 | ATCC 27417 | CBS 731.72 | DSM 40527
| NBRC 13430 | ISP 5527 | JCM 4543 | JCM 4722 | NRRL 2817 | RIA
1391
Streptoverticillium aureoversile AL Locci et al. 1969 -> Streptomyces au-
reoversilis ATCC 15853 | ATCC 25433 | CBS 664.69 | DSM 40387 |
NBRC 13021 | ISP 5387 | JCM 4457 | KCC S-0457 | RIA 1213 | RIA 681
283
Streptoverticillium biverticillatum AL (Preobrazhenskaya 1957) Farina

and Locci 1966 -> Streptomyces biverticillatus ATCC 23615 | ATCC
23888 | CBS 668.68 | DSM 40272 | NBRC 12845 | INA 10204/54 | ISP
5272 | RIA 1190
Streptoverticillium blastmyceticum AL (Watanabe et al. 1957) Locci et al.
1969 -> Streptomyces blastmyceticus 445 D1 | ATCC 19731 | CBS
470.68 | DSM 40029 | NBRC 12747 | ISP 5029 | RIA 1012
Streptoverticillium cinnamoneum subsp. cinnamoneum AL (Benedict et
al. 1952) Baldacci et al. 1966 -> Streptomyces cinnamoneus subsp.
cinnamoneus A-725 | ATCC 11874 | ATCC 23897 | CBS 293.64 | CBS
683.68 | DSM 40005 | DSM 41431 | ETH 13 355 | NBRC 12852 | IMRU
3664 | IPV 1776 | IPV 2013 | IPV 936 | ISP 5005, X53171, Stm.cincin |
JCM 4152 | JCM 4633 | KCC S-0152 | KCC S-0633 | NCIB 8851 | NRRL
B-1285 | RIA 1102 | RIA 360
Streptoverticillium cinnamoneum subsp. albosporum AL Thirumalachar
1968 -> Streptomyces cinnamoneus subsp. albosporus HA-145 |
ATCC 25186 | DSM 40897 | IPV 2066
Streptoverticillium cinnamoneum subsp. lanosum AL Thirumalachar 1968
-> Streptomyces cinnamoneus subsp. lanosus HA-176 | ATCC 25187
| DSM 40898 | IPV 2067
Streptoverticillium cinnamoneum subsp. sparsum AL Thirumalachar 1968

-> Streptomyces cinnamoneus subsp. sparsus HA-106 | ATCC 25185
| DSM 40899 | IPV 2068
Streptoverticillium distallicum AL Locci et al. 1969 -> Streptomyces distal-

licus DSM 40846 | NBRC 15815 | IPV 1983 | JCM 4544 | KCC S-0544
| NCIB 8936 | NRRL 2886 | VKM Ac-948
Streptoverticillium ehimense AL (Shibata et al. 1954) Locci et al. 1969 ->

Streptomyces ehimensis 138 | ATCC 23903 | CBS 799.68 | DSM 40253
| NBRC 12858 | NBRC 3398 | ISP 5253 | RIA 1179
Streptoverticillium eurocidicum AL (Okami et al. 1954) Locci et al. 1969

-> Streptomyces eurocidicus ATCC 27428 | CBS 792.72 | DSM 40604
| NBRC 13491 | IMET 43412 | ISP 5604 | JCM 4029 | NIHJ 267 | NRRL
B-1676 | RIA 1452 | RIA 733

Streptoverticillium fervens subsp. fervens AL Baldacci and Locci 1974 ->
Streptomyces fervens subsp. fervens ATCC 27429 | ISP 5086 | NRRL
2755
Streptoverticillium fervens subsp. melrosporus AL Mason et al. 1965 ->
Streptomyces fervens subsp. melrosporus UC 2459 | DSM 40905 |
NBRC 15920 | IPV 2022 | JCM 4926 | KCC S-0926 | NRRL 3117
Streptoverticillium ?avopersicum AL (Oliver et al. 1961) Locci et al. 1969
-> Streptomyces ?avopersicus M-141 | ATCC 19756 | CBS 494.68 |
DSM 40093 | NBRC 12769 | ISP 5093 | KCC S-0307 | KCC S-0370 |
NRRL 2820 | RIA 1036
Streptoverticillium griseocarneum AL (Benedict et al. 1950) Baldacci et
al. 1966 -> Streptomyces griseocarneus AS 4.1368 | NA 232-M1,
X99943 | ATCC 12628 | ATCC 19763 | CBS 501.68 | CCM 3228 | DSM
40004 | DSM 41062 | NBRC 12776 | NBRC 3387 | ISP 5004 | JCM 4095
| JCM 4580 | KCC S-0095 | LMG 5973 | NRRL B-1068 | NRRL B-1350
| RIA 1043 | RIA 132 | VKM Ac-881
Streptoverticillium griseoverticillatum AL (Shinobu and Shimada 1962)

Locci et al. 1969 -> Streptomyces griseoverticillatus 722 | ATCC
| JCM 4767 | RIA 1381
284
Streptoverticillium hachijoense AL (Hosoya et al. 1952) Locci et al. 1969

-> Streptomyces hachijoensis ATCC 19769 | CBS 507.68 | DSM 2011
| NBRC 12782 | ISP 5114 | RIA 1049
Streptoverticillium hiroshimense AL (Shinobu 1955) Farina and Locci

1966 -> Streptomyces hiroshimensis ATCC 19772 | CBS 510.68 |
DSM 40037 | NBRC 12785 | IMET 43546 | ISP 5037 | KCC S-0098 |
KCC S-0586 | NRRL B-1823 | OEU 201 | RIA 1052
Streptoverticillium kashmirense AL (Gupta and Chopra 1963) Locci et
al. 1969 -> Streptomyces kashmirensis RRL 37 A/9 | ATCC 27439 |
CBS 665.72 | DSM 40336 | NBRC 13364 | IPV 2023 | ISP 5336 | NRRL
B-3103 | RIA 1325
Streptoverticillium kentuckense AL (Barr and Carman 1956) Baldacci et al.
1966 -> Streptomyces kentuckensis ATCC 12691 | DSM 40052 | IMET
43083
Streptoverticillium kishiwadense AL (Shinobu and Kayamura 1964) Locci
et al. 1969 -> Streptomyces kishiwadensis ATCC 25464 | CBS 697.69
| DSM 40397 | NBRC 13052 | ISP 5397 | OEU 738 | RIA 1244
Streptoverticillium ladakanum AL Hanka et al. 1966 -> Streptomyces

ladakanum ATCC 27441 | DSM 40587, X53167, Stm.mobara | NRRL
3191
Streptoverticillium lavenduligriseum AL Locci et al. 1969 -> Streptomyces
lavenduligriseus BA-6903 | FD 22124 | ATCC 13306 | CBS 706.72 |
DSM 40487 | NBRC 13405 | ISP 5487 | NRRL B-3173 | RIA 1366
Streptoverticillium lilacinum AL (Nakazawa et al. 1956) Locci et al. 1969
-> Streptomyces lilacinus ATCC 23930 | CBS 914.68 | DSM 40254 |
ETH 24214 | NBRC 12884 | NBRC 3944 | IPV 1999 | ISP 5254 | JCM
4188 | JCM 4648 | RIA 1180
Streptoverticillium luteoverticillatum AL (Shinobu 1956) Locci et al. 1969
-> Streptomyces luteoverticillatus ATCC 23933 | CBS 917.68 | DSM
40038 | NBRC 12887 | ISP 5038 | JCM 4099 | JCM 46499 | OEU 486 |
RIA 1109
Streptoverticillium mashuense AL (Sawazaki et al. 1955) Locci et al. 1969
-> Streptomyces mashuensis IPCR 449 | ATCC 23934 | CBS 918.68 |
DSM 40221, X79323, Stm.mashue | NBRC 12888 | IMET 42941 | ISP
5221 | JCM 4059 | JCM 4650 | RIA 1165
Streptoverticillium mobaraense AL (Nagatsu and Suzuki 1963) Locci et al.
1969 -> Streptomyces mobaraensis 16-22 | ATCC 29032 | DSM 40847
| JCM 4168 | KCC S-0168
Streptoverticillium morookaense VP Locci and Scho?eld 1989 -> Strepto-

myces morookaensis SF-337 | ATCC 19166 | CBS 717.72 | DSM 40503
| NBRC 13416 | ISP 5503 | RIA 1377
Streptoverticillium netropsis AL (Finlay et al. 1951) Baldacci et al. 1966 ->

Streptomyces netropsis 4779 | ATCC 23940 | CBS 924.68 | DSM 40259
| ETH 15974 | NBRC 12893 | IPV 1720 | IPV 880 | ISP 5259 | JCM 4063
| JCM 4655 | NRRL 2268 | RIA 1184
Streptoverticillium olivomycini VP Gauze and Sheshnikova 1986 -> Strep-

tomyces olivomycini INA 16749
Streptoverticillium olivoreticuli subsp. olivoreticuli AL (Arai et al. 1957)
Baldacci et al. 1966 -> Streptomyces olivoreticuli subsp. olivoreticuli
ATCC 23943 | CBS 927.68 | DSM 40105 | IFM 1018 | NBRC 12896 |
ISP 5105 | JCM 4176 | JCM 4657 | RIA 1122

Streptoverticillium olivoreticuli subsp. cellulophilum VP Locci and
Scho?eld 1989 -> Streptomyces olivoreticuli subsp. cellulophilus
MK-33 | ATCC 21632 | DPDU 0278, X53166, Stm.olivor | DSM 41687
285
Streptoverticillium olivoverticillatum AL (Shinobu 1956) Baldacci et al.

1966 -> Streptomyces olivoverticillatus ATCC 25480 | CBS 890.69
| DSM 40250 | ETH 28537 | NBRC 13068 | ISP 5250 | JCM 4100 | JCM
4501 | NRRL B-1994 | OEU 383 | RIA 1260 | RIA 551

Streptoverticillium orinoci AL Cassinelli et al. 1967 -> Streptomyces
orinoci 1882 FI | ATCC 23202 | CBS 767.72 | DSM 40571 | NBRC
13466 | IPV 1901 | ISP 5571 | JCM 4546 | JCM 4807 | NRRL B-3379 |
RIA 1427
Streptoverticillium parvisporogenes AL Locci et al. 1969 -> Streptomyces
parvisporogenes BA-3572 | ATCC 12568 | CBS 695.72 | DSM 40473 |
NBRC 13394 | ISP 5473 | KCC S-0694 | KCC S-0812 | RIA 1355
Streptoverticillium rectiverticillatum AL (Krassilnikov and Yuan 1965)
Locci et al. 1969 -> Streptomyces rectiverticillatus ATCC 19845 |
ATCC 25491 | CBS 951.69 | DSM 40436 | NBRC 13079 | INMI 380 |
ISP 5436 | RIA 1271
Streptoverticillium reticulum subsp. protomycicum VP (ex Sugawara et al.
1963) Locci and Scho? eld 1989 KCC S-0180 464
Streptoverticillium roseoverticillatum AL (Shinobu 1956) Farina and Locci
1966 -> Streptomyces roseoverticillatus ATCC 19807 | CBS 560.68 |
DSM 40039 | ETH 24434 | ETH 24484 | NBRC 12817 | IPV 2003 | ISP
5039 | JCM 4103 | KCC S-0103 | KCC S-0607 | NRRL B-1993 | RIA 1087
| RIA 552
Streptoverticillium salmonis AL (Baldacci et al. 1966) Locci et al. 1969

-> Streptomyces salmonis DPDU 0098, X53169, Stm.salmon | DSM
40895 | ETH 27040 | ETH 28397 | IPV 2019
Streptoverticillium sapporonense VP Locci and Scho?eld 1989 -> Strepto-
myces sapporonensis ATCC 21532 | DSM 41493
Streptoverticillium septatum AL Locci et al. 1969 -> Streptomyces septatus
M-741 | ATCC 27464 | CBS 772.72 | DSM 40577 | NBRC 13471 | ISP
5577 | KCC S-0547 | KCC S-0829 | NRRL 2974 | RIA 1432

Streptoverticillium syringium VP Konev 1986 -> Streptomyces syringium
DSM 41502 | LIA-0725
Streptoverticillium thioluteum AL (Okami 1952) Baldacci et al. 1966 ->
Streptomyces thioluteus ATCC 12310 | CBS 642.72 | DSM 40027 |
DSM 41486 | NBRC 13341 | NBRC 3364 | ISP 5027 | JCM 4087 | JCM
4182 | RIA 1302
Streptoverticillium verticillium subsp. quintum VP (ex Arai 1976) Locci and
Scho?eld 1989 Okami MA-267-A1
Streptoverticillium verticillium subsp. tsukushiense VP (ex Arai 1976) Locci
and Scho? eld 1989 ATCC 21633 465
Streptoverticillium virido?avum VP Locci and Scho?eld 1989 -> Strep-
tomyces virido?avus ATCC 12631 | CBS 652.72 | DSM 40237 | ETH
24306 | NBRC 13351 | IMRU 3685 | ISP 5237 | JCM 4221 | JCM 4857 |
NRRL B-1569 | RIA 1312
Suborder XV. Streptosporangineae VP
Family I. Streptosporangiaceae VP
Genus I. Streptosporangium AL (T)
Streptosporangium roseum AL (T) Couch 1955 N I 9100 | ATCC 12428 |
CBS 313.56 | DSM 43021, X70425, Sts.roseum | DSM 43021, X89947,
Sts.roseu2 | IAM 14294 | NBRC 3776 | JCM 3005, U48996, Sts.roseu5
| KCC A-0005 | NCIB 10171 | NRRL B-2505 | RIA 470 | UNCC 27 B
46 4
Th e nam e S treptoverticilliu m reticu lum subsp. p ro tomyc ic um is illeg itimat e be cau se neither S trepto verticilliu m reticu lum nor S trepto ve rti-
cillium re ticulum su bsp . re ticulum appe ared on t he A pp ro ved List or s ubs eq uent va lidation lists .
46 5
The n ames St re ptoverticillium verticilliu m su bsp. qu intu m and S trepto ve rt ic illium v ertic illium s ub sp. tsu kus hiens e are illegitim ate be ca use
the na mes S trepto verticilliu m verticilliu m and Strep toverticillium v ertic illium v ertic illium did n ot a ppea r on the Ap prov ed L is t a nd hav e nev er
be en va lidly pub lish ed.
286
Streptosporangium albidum AL Furumai et al. 1968 -> Kutzneria albida

MCRL 048 | ATCC 25243 | DSM 43870 | NBRC 13901
Streptosporangium album AL Nonomura and Ohara 1960 S-16 | CBS 429.61
| DSM 43023, X89934, Sts.album | IMET 9014 | KCC A-0025 | NRRL
B-2635 | RIA 764

Streptosporangium amethystogenes subsp. amethystogenes AL Nonomura
and Ohara 1960 S-5 | ATCC 33327 | CBS 430.61 | DSM 43179,
X89935, Sts.amethy | IMET 9011 | KCC A-0026 | NRRL B-2639 | RIA
767
Streptosporangium amethystogenes subsp. fukuiense VP Iinuma et al. 1996
AL-23456 | NBRC 15365
Streptosporangium carneum VP Mertz and Yao 1990 A84575 | DSM 44125,

X89938, Sts.carneu | NRRL 18437
Streptosporangium claviforme VP Petrolini et al. 1993 D1 | DSM 44127,
X89940, Sts.clavif | IPV 2852 | NCB 1160
Streptosporangium corrugatum AL Williams and Sharples 1976 -> Acro-
carpospora corrugata E 90 | ATCC 29331, X70427, Sts.corrug | DSM
43316, X70427, Sts.corrug | DSM 43316, X89941, Sts.corru2 | NCIB
11120
Streptosporangium fragile VP Shearer et al. 1983 ATCC 31519 | DSM
43847, X89942, Sts.fragil | NBRC 14311, U48992, Sts.fragi2 | JCM
6242 | SKF-BC2496
Streptosporangium indianense AL Gupta 1965 -> Streptomyces indiaensis
ATCC 33330 | CBS 560.75 | DSM 43803 | NBRC 13964 | JCM 3053 |
KCC A-0053 | NCIB 9794

Streptosporangium longisporum AL Schfer 1969 S66 | ATCC 25212 | CBS
184.69 | DSM 43180, X89944, Sts.longsp | KCC A-0106
Streptosporangium nondiastaticum AL Nonomura and Ohara 1969 S2-31
| ATCC 27101, X70426, Sts.nondia | CBS 800.70 | DSM 43848,
X89945, Sts.nondi2 | NBRC 13990, U48994, Sts.nondi3 | IMET 9018 |

JCM 3114, X70426, Sts.nondia | KCC A-0114
Streptosporangium pseudovulgare AL Nonomura and Ohara 1969 FYU
S2-32 | ATCC 27100 | CBS 881.70 | DSM 43181, X70428, Sts.pvulgr |
DSM 43181, X89946, Sts.pvulg2 | IMET 9017 | KCC A-0115
Streptosporangium subroseum VP Zhang et al. 2002 CY-7113, AF191734
| CCTCC 97008 | CCRC 16302
Streptosporangium violaceochromogenes AL Kawamoto et al. 1975

MK-49 | ATCC 21807 | DSM 43849, X89951, Sts.violac | JCM 3281,
U48997, Sts.viola3 | KCC A-0281
Streptosporangium viridialbum AL Nonomura and Ohara 1960 FYU S-20
| CBS 432.61 | DSM 43801 | JCM 3027, U48998, Sts.viral3 | KCC
A-0027 | NRRL B-2636

Streptosporangium viridogriseum subsp. viridogriseum AL Okuda et al.
1966 -> Kutzneria viridogrisea MCRL 0044 | ATCC 25242 | DSM
43850, X70429, Kt.viridog | JCM 3282, U58530, Kt.virido2 | NIHJ 523
Streptosporangium viridogriseum subsp. kofuense AL Nonomura and
Ohara 1969 -> Kutzneria kofuensis S2-28 | ATCC 27102 | CBS
803.70 | DSM 43851 | NBRC 13989 | JCM 3157
Streptosporangium vulgare AL Nonomura and Ohara 1960 FYU S-1
| ATCC 33329 | DSM 43802, X89955, Sts.vulgar | NBRC 13985,
U48999, Sts.vulga4 | IMET 9013 | KCC A-0028 | NRRL B-2633 | RIA

765
Genus II. Acrocarpospora VP
Acrocarpospora pleiomorpha VP (T) Tamura et al. 2000 R-31, AB006174 |
NBRC 16267, AB006174
287
Acrocarpospora corrugata VP (Williams and Sharples 1976) Tamura et al.

2000 DSM 43316, X89941 | NBRC 13972, X89941
Acrocarpospora macrocephala VP Tamura et al. 2000 R-55, AB025318 |
NBRC 16266, AB025318
Genus III. Herbidospora VP
Herbidospora cretacea VP (T) Kudo et al. 1993 K-319 | DSM 44071 | IAM
14284 | NBRC 15474, D85485, Hbs.cretac | JCM 8553
Genus IV. Microbispora AL
Microbispora rosea subsp. rosea AL (T) Nonomura and Ohara 1957 FYU
M-20 | NI 9096 | ATCC 12950 | CBS 189.57 | CBS 307.61 | DSM 43839
| IAM 0114 | NBRC 14044, D86936, Mbsp.rosea | NBRC 3559 | IMET
9534 | IMRU 3757 | JCM 3006 | KCC A-0006 | NCIB 9560 | RIA 477 |
RIA 763
Microbispora rosea subsp. aerata VP (Gerber and Lechevalier 1964)
Miyadoh et al. 1991 <- Microbispora aerata (basonym) P 132
| ATCC 15448, U48984, Mbsp.rose2 | DSM 43176 | NBRC 12581 |
IMET 9503 | JCM 3076

Microbispaora aerata AL (Gerber and Lechevalier 1964) Cross 1974 ->
Microbispora rosea subsp. aerata P 132 | ATCC 15448, U48984,
Mbsp.rose2 | DSM 43176 | IMET 9503 | JCM 3076
Microbispora amethystogenes AL Nonomura and Ohara 1960 CBS 303.61
| DSM 43164 | IMET 9533 | JCM 3021, U48988 | NRRL B-2637 | RIA
760
Microbispora bispora AL (Henssen 1957) Lechevalier 1965 -> Thermobis-
pora bispora R51 | ATCC 19993, U58523, Ths.bispo5 | ATCC 19993,
U83909, Ths.bispo2 | ATCC 19993, U83910, Ths.bispor | ATCC
19993, U83911, Ths.bispo3 | ATCC 19993, U83912, Ths.bispo4 | CBS
139.67 | DSM 43833 | DSM 43833 | NBRC 14880
Microbispora chromogenes AL Nonomura and Ohara 1960 M-22 | DSM
43165 | JCM 3022 | KCC A-0022 | NRRL B-2634
Microbispora corallina VP Nakajima et al. 1999 DF-32, AB018046 | JCM
10267
Microbispora diastatica AL Nonomura and Ohara 1960 KCC A-0023
Microbispora echinospora AL Nonomura and Ohara 1971 -> Actino-
madura echinospora Mb3-1, U49004 | ATCC 27300 | DSM 43163 |
NBRC 14042 | JCM 3148
Microbispora indica VP Rao et al. 1987 ATCC 35926 | SKF-I-101055
Microbispora karnatakensis VP Rao et al. 1987 ATCC 35927 | SKF-I-58261
Microbispora mesophila VP (Nonomura and Ohara 1971) Zhang et al. 1998
<- Thermomonospora mesophila (basonym) T-1 | ATCC 27303 | DSM
43048 | JCM 3151, AF002266, Mbsp.mphil | KCC A-0151
Microbispora parva AL Nonomura and Ohara 1960 KCC A-0024 | ATCC
33326, U48985
Microbispora thermodiastatica AL Nonomura and Ohara 1969 FYU M2-59
| ATCC 27098, U48986, Mbsp.rose7 | CBS 799.70 | DSM 43166 | KCC
A-0110
Microbispora thermorosea AL Nonomura and Ohara 1969 ATCC 27099,
U48987, Mbsp.rose8
Microbispora viridis VP Miyadoh et al. 1985 -> Actinomadura rugato-
bispora SF-2240 | DSM 44130 | NBRC 14382, U49010, Amd.rugato |
JCM 3366 | NRRL B-16566
Genus V. Microtetraspora AL
Microtetraspora glauca AL (T) Thiemann et al. 1968 T 158 | ATCC 23057
| DSM 43311, X97891, Mtt.glauca | IAM 14286 | NBRC 14761,
288
D85490, Mtt.glauc3 | NBRC 14761, U48974, Mtt.glauc2 | IMET 9532

|JCM 3300 | KCC A-0134
Microtetraspora africana VP (Preobrazhenskaya and Sveshnikova 1974)
Kroppenstedt et al. 1991 <- Nocardiopsis africana (basonym) ->
Nonomuraea africana ATCC 35107 | DSM 43748 | NBRC 14745,
U48842, Nm.african | INA 1839 | RIA 1839
Microtetraspora angiospora VP (Zhukova et al. 1968) Kroppenstedt et
al. 1991 <- Micropolyspora angiospora (basonym) -> Nonomuraea
angiospora DSM 43173 | NBRC 13155, U48843, Nm.angiosp | KCC
A-0109 | LIA 3479-30
Microtetraspora fastidiosa VP (Soina et al. 1975) Kroppenstedt et al. 1991
<- Actinomadura fastidiosa (basonym) -> Nonomuraea fastidiosa
ATCC 33516 | DSM 43674 | NBRC 14680, U48844, Nm.fastidi | INMI
104 | JCM 3321 | VKM Ac-804
Microtetraspora ferruginea VP (Meyer 1981) Kroppenstedt et al. 1991
<- Actinomadura ferruginea (basonym) -> Nonomuraea ferruginea
487-2 | ATCC 35575 | DSM 43553 | NBRC 14094, U48845, Nm.fer-
rugi | IMET 9567 | JCM 3283 | NCIB 11630 | NRRL B-16096

Microtetraspora ?exuosa VP (Meyer 1989) Kroppenstedt et al. 1991 <-
Actinomadura ?exuosa (basonym) -> Nonomuraea ?exuosa 435 |
ATCC 35864 | DSM 43186 | NBRC 14349 | JCM 3056 | KCC A-0056
Microtetraspora fusca AL Thiemann et al. 1968 T/457 | ATCC 23058 | CBS
623.67 | DSM 43841 | NBRC 13915, U48973, Mtt.fusca1 | IMET 9531
| JCM 3183 | RIA 924
Microtetraspora helvata VP (Nonomura and Ohara 1971) Kroppenstedt et

al. 1991 <- Actinomadura helvata (basonym) -> Nonomuraea hel-
vata FYU A-105 | ATCC 27295 | DSM 43142 | NBRC 14681, U48975
| IMET 9584 | KCC A-0143
Microtetraspora malaysiensis VP Nakajima et al. 2004 H47-7, AB062383

| DSM 44579 | JCM 11278
Microtetraspora niveoalba AL Nonomura and Ohara 1971 FYU Mt-3 |

ATCC 27301 | DSM 43174 | NBRC 15239, U48976, Mtt.nivalb | JCM
3149 | KCC A-0149
Microtetraspora polychroma VP (Galatenko et al. 1987) Kroppenstedt et
al. 1991 <- Actinomadura polychroma (basonym) -> Nonomuraea
polychroma ATCC 49500 | DSM 43925 | NBRC 14345, U48977,
Nm.plychrm | IMET 9743 | INA 2755 | NRRL B-16243 | VKM Ac 1084
Microtetraspora pusilla VP (Nonomura and Ohara 1971) Kroppenstedt
et al. 1991 <- Actinomadura pusilla (basonym) -> Nonomuraea
pusilla A-118 | ATCC 27296 | CBS 262.72 | DSM 43357 | NBRC
14684, D85491, Nm.pusilla | NBRC 14684, U48978, Nm.pussil2 |
KCC A-0144 | NCIMB 11116
Microtetraspora recticatena VP (Terekhova et al. 1987) Kroppenstedt et
al. 1991 <- Actinomadura recticatena (basonym) -> Nonomuraea
recticatena DSM 43937 | NBRC 14525, U48979, Nm.rectica | INA
308 | VKM Ac-940
Microtetraspora roseola VP (Lavrova and Preobrazhenskaya 1975) Krop-
penstedt et al. 1991 <- Actinomadura roseola (basonym) -> Nono-
muraea roseola ATCC 33579 | DSM 43767 | NBRC 14685, U48980,
Nm.salmone | IMET 9576 | INA 1671 | JCM 3323 | KCC A-0323
Microtetraspora roseoviolacea VP (Nonomura and Ohara 1971) Kroppen-
stedt et al. 1991 <- Actinomadura roseoviolacea (basonym) -> Nono-
muraea roseoviolacea subsp. roseoviolacea A-5 | ATCC 27297 | DSM
43144 | NBRC 14098, AB039959 | IMET 9751 | KCC A-0145
289
Microtetraspora rubra VP (Sveshnikova et al. 1969) Kroppenstedt et al.

1991 <- Actinomadura rubra (basonym) -> Nonomuraea rubra
ATCC 27031 | CBS 132.76 | DSM 43768, AF277200 | NBRC 14070 |
IMET 8181 | JCM 3234 | KCC A-0234 | VKM Ac-615
Microtetraspora salmonea VP (Preobrazhenskaya et al. 1975) Kroppenst-
edt et al. 1991 <- Actinomadura salmonea (basonym) -> Nonomuraea
salmonea ATCC 33580 | DSM 43678, X97892, Mtt.salmon | IMET
9582 | INA 2488
Microtetraspora spiralis VP (Meyer 1981) Kroppenstedt et al. 1991 <-
Actinomadura spiralis (basonym) -> Nonomuraea spiralis 832-34
| ATCC 35114 | CCM 3426 | DSM 43555 | NBRC 14097, U48983,
Nm.spirali | IMET 9621 | JCM 3286 | KCC A-0286 | NCIB 11633 |

NRRL B-16098
Microtetraspora turkmeniaca VP (Terekhova et al. 1987) Kroppenstedt et
al. 1991 <- Actinomadura turkmeniaca (basonym) -> Nonomuraea
turkmeniaca ATCC 49501 | DSM 43926, AF277201 | NBRC 14348 |
IMET 9746 | INA 3344 | VKM Ac 852
Microtetraspora tyrrhenii VP Tomita et al. 1992 Q464-31 | ATCC 53931
Microtetraspora viridis AL Nonomura and Ohara 1971 -> Actinomadura
viridis Mt-1 | ATCC 27103 | CBS 833.70 | DSM 43175 | IMET 9546 |
JCM 3112 | KCC A-0112
Genus VI. Nonomuraea VP
Nonomuraea pusilla VP (T) (Nonomura and Ohara 1971) Zhang et al. 1998
<- Microtetraspora pusilla (basonym) A-118 | ATCC 27296 | CBS
262.72 | DSM 43357 | NBRC 14684, D85491, Nm.pusilla | NBRC
14684, U48978, Nm.pussil2 | KCC A-0144 | NCIMB 11116
Nonomuraea africana VP (Preobrazhenskaya and Sveshnikova 1974) Zhang
et al. 1998 <- Microtetraspora africana (basonym) ATCC 35107 |
DSM 43748 | NBRC 14745, U48842, Nm.african | INA 1839 | RIA 1839
Nonomuraea angiospora VP (Zhukova et al. 1968) Zhang et al. 1998 <-
Microtetraspora angiospora (basonym) DSM 43173 | NBRC 13155,
U48843, Nm.angiosp | KCC A-0109 | LIA 3479-30
Nonomuraea dietziae VP Stackebrandt et al. 2001 DSM 44320, AJ278220
| NRRL 11111
Nonomuraea fastidiosa VP (Soina et al. 1975) Zhang et al. 1998 <- Microte-
traspora fastidiosa (basonym) ATCC 33516 | DSM 43674 | NBRC
14680, U48844, Nm.fastidi | INMI 104 | JCM 3321 | VKM Ac-804
Nonomuraea ferruginea VP (Meyer 1981) Zhang et al. 1998 <- Microte-
traspora ferruginea (basonym) 487-2 | ATCC 35575 | DSM 43553 |
NBRC 14094, U48845, Nm.ferrugi | IMET 9567 | JCM 3283 | NCIB
11630 | NRRL B-16096
Nonomuraea ?exuosa VP (Meyer 1989) Zhang et al. 1998 <- Microte-
traspora ?exuosa (basonym) 435 | ATCC 35864 | DSM 43186 | NBRC
14349 | JCM 3056 | KCC A-0056
Nonomuraea helvata VP (Nonomura and Ohara 1971) Zhang et al. 1998 <-
Microtetraspora helvata (basonym) FYU A-105 | ATCC 27295 | DSM
43142 | IMET 9584 | KCC A-0143
Nonomuraea longicatena VP Chiba et al. 1999 K-252 | NRRL 15532,
AB018787
Nonomuraea polychroma VP (Galatenko et al. 1987) Zhang et al. 1998 <-
Microtetraspora polychroma (basonym) ATCC 49500 | DSM 43925 |
NBRC 14345, U48977, Nm.plychrm | IMET 9743 | INA 2755 | NRRL
B-16243 | VKM Ac 1084
290
Nonomuraea recticatena VP (Terekhova et al. 1987) Zhang et al. 1998 <-

Microtetraspora recticatena (basonym) DSM 43937 | NBRC 14525,
U48979, Nm.rectica | INA 308 | VKM Ac-940
Nonomuraea roseola VP (Lavrova and Preobrazhenskaya 1975) Zhang et
al. 1998 <- Microtetraspora roseola (basonym) ATCC 33579 | DSM
43767 | NBRC 14685, U48980, Nm.salmone | IMET 9576 | INA 1671 |
JCM 3323 | KCC A-0323
Nonomuraea roseoviolacea subsp. roseoviolacea VP (Nonomura and Ohara
1971) Zhang et al. 1998 466 <- Microtetraspora roseoviolacea (ba-
sonym) A-5 | ATCC 27297 | DSM 43144 | NBRC 14098, AB039959,
AB043101 | IMET 9751 | KCC A-0145
Nonomuraea roseoviolacea subsp. carminata VP (Gauze et al. 1973) Gy-
obu and Miyadoh 2001 <- Actinomadura carminata (basonym) DSM
44170 | NBRC 15903, AB039961, | INA 4281 | VKM Ac-1780
Nonomuraea rubra VP (Sveshnikova et al. 1969) Zhang et al. 1998 <-
Microtetraspora rubra (basonym) ATCC 27031 | CBS 132.76 | DSM
43768, AF277200 | NBRC 14070 | IMET 8181 | JCM 3234 | KCC
A-0234 | VKM Ac-615
Nonomuraea salmonea VP (Preobrazhenskaya et al. 1975) Zhang et al. 1998
<- Microtetraspora salmonea (basonym) ATCC 33580 | DSM 43678,
X97892, Mtt.salmon | IMET 9582 | INA 2488
Nonomuraea spiralis VP (Meyer 1981) Zhang et al. 1998 <- Microte-
traspora spiralis (basonym) 832-34 | ATCC 35114 | CCM 3426 | DSM
43555 | NBRC 14097, U48983, Nm.spirali | IMET 9621 | JCM 3286 |
KCC A-0286 | NCIB 11633 | NRRL B-16098
Nonomuraea turkmeniaca VP (Terekhova et al. 1987) Zhang et al. 1998 <-
Microtetraspora turkmeniaca (basonym) ATCC 49501 | DSM 43926,
AF277201 | NBRC 14348 | IMET 9746 | INA 3344 | VKM Ac 852
Genus VII. Planobispora AL
Planobispora longispora AL (T) Thiemann and Beretta 1968 Pb-1075 | ATCC
23867 | CBS 115.69 | DSM 43041 | IAM 14288 | NBRC 13879 | NBRC
13918, D85494, Pbs.longsp | JCM 3092 | KCC A-0092
Planobispora rosea AL Thiemann 1970 Pb-1435 | ATCC 23866 | DSM
43051 | JCM 3166, AB028654 | KCC A-0166
Genus VIII. Planomonospora AL
Planomonospora parontospora subsp. parontospora AL (T) Thiemann et al.
1967 B-677 | ATCC 23863 | DSM 43177 | IAM 14289 | NBRC 13880,
D85495, Pms.paront | JCM 3093 | KCC A-0093
Planomonospora parontospora subsp. antibiotica AL Thiemann et al.
1968 B-987 | ATCC 23864 | DSM 43869 | NBRC 15869 | JCM 3094,
AB028653
Planomonospora alba VP Mertz 1994 A82600 | ATCC 51588 | DSM 44227
| JCM 9373, AB062381 | NRRL 18924
Planomonospora sphaerica VP Mertz 1994 A51460 | JCM 9374, AB062382

| NRRL 18923
Planomonospora venezuelensis AL Thiemann 1970 B-1072 | ATCC 23865 |

DSM 43178 | JCM 3167, AB028655 | KCC A-0167
Genus IX. Planopolyspora VP
Planopolyspora crispa VP (T) Petrolini et al. 1993 -> Catenuloplanes cris-
pus DSM 44128 | IPV 2867 | JCM 9312, AB024701 | NCB 1173
Genus X. Planotetraspora VP
Planotetraspora mira VP (T) Runmao et al. 1993 NA9211028 | DSM 44359
| NBRC 15435, D85496, Plt.mira1 | JCM 9131 | SIIA9201
46 6
291
Family II. Nocardiopsaceae VP

Genus I. Nocardiopsis AL (T)
Nocardiopsis dassonvillei subsp. dassonvillei AL (T) (Brocq-Rousseau 1904)
Meyer 1976 = Nocardiopsis antarctica (junior heterotypic synonym)
ATCC 23218 | DSM 43111, X97886, Nrp.dasson | IAM 14287 | NBRC
14626, D85492, Nrp.dasso2 | IMET 9605 | IMRU 509 | JCM 7437 |

NCTC 10488
Nocardiopsis dassonvillei subsp. albirubida VP Evtushenko et al. 2000 <-
Nocardiopsis alborubida (basonym) ATCC 23612 | CBS 963 | DSM
40465, X97882, Nrp.dasso3 | NBRC 13392 | INA 647 | ISP 5465 | KCC
S-0717 | RIA 1953 | VKM Ac-1882
Nocardiopsis dassonvillei subsp. prasina VP Miyashita et al. 1984 -> No-
cardiopsis alba subsp. prasina 208 | DSM 43845, X97884, Nrp.prasin
| JCM 3336 | KCC A-0336
Nocardiopsis aegyptia VP Sabry et al. 2004 SNG49 | DSM 44442,

AJ539401 | NRRL B-24244
Nocardiopsis africana VP (Preobrazhenskaya and Sveshnikova 1974) Pre-
obrazhenskaya et al. 1985 <- Actinomadura africana (basonym) ->
Microtetraspora africana ATCC 35107 | DSM 43748 | NBRC 14745,
Nocardiopsis alba subsp. alba VP Grund and Kroppenstedt 1990 A29 |
DSM 43377, X97883, Nrp.alba1 | JCM 9419
Nocardiopsis alba subsp. prasina VP Grund and Kroppenstedt 1990 <-
Nocardiopsis dassonvillei subsp. prasina (basonym) -> Nocardiopsis
prasina 208 | ATCC 35940 | DSM 43845, X97884, Nrp.prasin | JCM
3336 | KCC A-0336
Nocardiopsis alborubida VP Grund and Kroppenstedt 1990 -> Nocardiop-
sis dassonvillei subsp. albirubida ATCC 23612 | CBS 963 | DSM
40465, X97882, Nrp.dasso3 | NBRC 13392 | INA 647 | ISP 5465 | KCC
S-0717 | RIA 1953 | VKM Ac-1882
Nocardiopsis alkaliphila VP Hozzein et al. 2004 CCTCC AA001031 | DSM
44657 | YIM 80379, AY230848
Nocardiopsis antarctica VP Abyzov et al. 1984 = Nocardiopsis das-
sonvillei (senior heterotypic synonym) 25-145 | ATCC 43517 | DSM
43884, X97885, Nrp.dasso4 | NBRC 14447 | INMI K-4042 | JCM 6843
| NRRL B-16236 | VKM A-836
Nocardiopsis composta VP Kmpfer et al. 2002 KS9 | DSM 44551,

AF360734 | NRRL B-24145
Nocardiopsis coeruleofusca VP (Preobrazhenskaya and Sveshnikova 1974)
Preobrazhenskaya and Sveshnikova 1985 <- Actinomadura coeruleo-
fusca (basonym) -> Saccharothrix coeruleofusca ATCC 35108 | DSM
43679, X76963, Sct.coerul | IMET 9602 | INA 1335
Nocardiopsis exhalans VP Peltola et al. 2002 ES10.1 | DSM 44407,
AY028325 | NRRL B-24123
Nocardiopsis ?ava VP (Gauze et al. 1974) Gauze and Sveshnikova 1985 <-
Actinomadura ?ava (basonym) -> Saccharothrix ?ava ATCC 29533
| DSM 43885 | INA 2171 | JCM 3296 | KCC A-0296 | NCIB 11447
Nocardiopsis halophila VP Al-Tai and Ruan 1994 IQ-H3 | CCIM

A.S.4.1195 | DSM 44494, AJ421018 | KCTC 9825, AF195411
Nocardiopsis halotolerans VP Al-Zarban et al. 2002 F100 | DSM 44410 ,
AJ290448 | NRRL B-24124
Nocardiopsis kunsanensis VP Chun et al. 2000 HA-9, AF195412 | JCM
10721 | KCTC 9831, AF195412
292
Nocardiopsis listeri VP Grund and Kroppenstedt 1990 ATCC 27442 | CBS

661 | DSM 40297, X97887, Nrp.lister | NBRC 13360 | ISP 5297 | KCC
S-0782 | NCTC 434 | PCM 2491 | RIA 1321
Nocardiopsis longispora VP (Preobrazhenskaya and Sveshnikova 1974)
Preobrazhenskaya and Sveshnikova 1985 <- Actinomadura longis-
pora (basonym) -> Saccharothrix longispora ATCC 35109 | DSM
43749, X76964, Sct.longis | IMET 9603 | INA 10222
Nocardiopsis lucentensis VP Yassin et al. 1993 A5-1 | ATCC 51300 | DSM
44048, X97888, Nrp.lucent | NBRC 15854 | JCM 9420
Nocardiopsis metallicus VP Schippers et al. 2002 R2A, AJ420769 | DSM
44598 | KBS6 | NRRL B-24159
Nocardiopsis mutabilis VP Shearer et al. 1983 -> Saccharothrix mu-
tabilis subsp. mutabilis AAA-0025 | ATCC 31520 | DSM 43853,
X76966, Sct.mutabm | NBRC 14310 | JCM 3380 | NRRL B-16077 |
SKF-AAA025
Nocardiopsis prasina VP (Grund and Kroppenstedt 1990) Yassin et al. 1997
<- Nocardiopsis alba subsp. prasina (basonym) 208 | ATCC 35940 |
DSM 43845, X97884, Nrp.prasin | JCM 3336 | KCC A-0336
Nocardiopsis synnemataformans VP Yassin et al. 1997 DSM 44143 | IM-
MIB D-1215, Y13593, Nrp.synmtf | JCM 10456
Nocardiopsis syringae VP Gauze et al. 1985 -> Saccharothrix syringae
ATCC 51364 | DSM 43886 | NBRC 14523 | IMET 9675 | INA 2240 |
JCM 6844
Nocardiopsis trehalosi VP Evtushenko et al. 2000 NBRC 14201 | JCM 3357
| NRRL 12026 | VKM Ac-942, AF105972
Nocardiopsis tropica VP Evtushenko et al. 2000 VKM Ac-1457,

AF105971
Nocardiopsis umidischolae VP Peltola et al. 2002 66/93, AY036001 | DSM
44362 | NRRL B-24122
Nocardiopsis xinjiangensis VP Li et al. 2003 CCRC 16285 | CCTCC
AA99004 | DSM 44589 | YIM 90004, AF251709
Genus II. Streptomonospora VP
Streptomonospora salina VP (T) Cui et al. 2001 YIM 90002, AF178988 |
CCRC 16284 | CCTCC 9003
Genus III. Thermobi?da VP
Thermobi?da alba VP (T) (Locci et al. 1967) Zhang et al. 1998 <- Ther-
momonospora alba (basonym) DSM 43310 | IMET 9528 | IPV 1900 |
JCM 3077, AF002260, Tbf.alba1 | KCC A-0077
Thermobi?da cellulolytica Kukolya et al. 2002 TB100, AJ298058 | DSM
44535 | NCAIM B01997
Thermobi?da fusca VP (McCarthy and Cross 1984) Zhang et al. 1998
<- Thermomonospora fusca (basonym) 190Th | ATCC 27730,
AF002264, Tbf.fusca1 | ATCC 27730, AF028245, Tbf.fusca2 | CUB
1000 | DSM 43792 | NBRC 14071 | JCM 3263 | NCIB 11185
Family III. Thermomonosporaceae VP
Genus I. Thermomonospora AL (T)
Thermomonospora curvata AL (T) Henssen 1957 B 9 | ATCC 19995 | CBS
141.67 | DSM 43183, X97893, Tmms.curva | IAM 14296 | NBRC
15933, D86945, Tmms.curv2 | IMET 9551 | JCM 3096, AF002262,
Tmms.curv3 | KCC A-0096
Thermomonospora alba AL (Locci et al. 1967) Cross and Goodfellow 1973
= Thermomonospora mesouviformis (junior heterotypic synonym) ->
Thermobi?da alba DSM 43310 | IMET 9528 | IPV 1900 | JCM 3077,
AF002260, Tbf.alba1 | KCC A-0077
293
Thermomonospora chromogena VP McCarthy and Cross 1984 Agre 577

| ATCC 43196, AF028246, Tmms.chrm2 | CUB 580 | DSM 43794 |
NBRC 12465 | IMET 9529 | IMRU N 2900 | JCM 6244, AF002261,

Tmms.chrmg | NCIB 10212
Thermomonospora formosensis VP Hasegawa et al. 1986 -> Actinomadura
formosensis C-36820 | ATCC 49059 | DSM 43997 | NBRC 14204 | JCM
7474, AF002263, Amd.frmosn
Thermomonospora fusca VP McCarthy and Cross 1984 -> Thermobi?da
fusca 190Th | ATCC 27730, AF002264, Tbf.fusca1 | ATCC 27730,
AF028245, Tbf.fusca2 | CUB 1000 | DSM 43792 | NBRC 14071 | JCM
3263 | NCIB 11185
Thermomonospora mesophila AL Nonomura and Ohara 1971 -> Micro-
bispora mesophila T-1 | ATCC 27303 | DSM 43048 | JCM 3151,
AF002266, Mbsp.mphil | KCC A-0151
Thermomonospora mesouviformis AL Nonomura and Ohara 1974 =
Thermobi?da alba (senior heterotypic synonym) T-3 | ATCC 27644,
AF028247, Tbf.alba2 | DSM 43185 | KCC A-0169
Genus II. Actinomadura AL
Actinomadura madurae AL (T) (Vincent 1894) Lechevalier and Lechevalier
1970 ATCC 19425 | CCM 136 | DSM 43067, X97889, Amd.madur2
| IAM 14277 | NBRC 13909 | NBRC 14623, D85468, Amd.madur3 |
IMET 9585 | IMRU 1190 | JCM 7436, D50668, Amd.madura | JCM

7436, U58527, Amd.madur4 | NCTC 5654
Actinomadura africana AL Preobrazhenskaya and Sveshnikova 1974 ->
Nocardiopsis africana ATCC 35107 | DSM 43748 | NBRC 14745,
Actinomadura atramentaria VP Miyadoh et al. 1987 SF2197 | DSM 43919
| NBRC 14695, U49000, Amd.atramn | JCM 6250
Actinomadura aurantiaca AL Lavrova and Preobrazhenskaya 1975 ->

Actinocorallia aurantiaca DSM 43924 | IMET 9577 | INA 1933 | JCM
8201, AF134066, D50669, Amd.aurant
Actinomadura carminata AL Gauze et al. 1973 -> Nonomuraea roseovio-
lacea subsp. carminata DSM 44170 | NBRC 15903, AB039961 | INA
4281 | VKM Ac-1780
Actinomadura catellatispora NP Lu et al. 2003 3.24 | AS 4.1522,
AF154127 | NBRC 16341
Actinomadura citrea AL Lavrova et al. 1972 ATCC 27887 | DSM 43461 |
NBRC 14678, U49001, Amd.citrea | IMET 9573 | INA 1849 | JCM 3295
Actinomadura coerulea AL Preobrazhenskaya et al. 1975 ATCC 33576 |
DSM 43675 | NBRC 14679, U49002, Amd.coerul | IMET 9580 | INA
765 | JCM 3320
Actinomadura coeruleofusca AL Preobrazhenskaya and Sveshnikova 1974
-> Nocardiopsis coeruleofusca ATCC 35108 | DSM 43679, X76963,
Sct.coerul | IMET 9602 | INA 1335
Actinomadura coeruleoviolacea VP Preobrazhenskaya and Terekhova
1987 -> Saccharothrix coeruleoviolacea DSM 43935 | INA 3564 |
VKM Ac 1083
Actinomadura cremea subsp. cremea AL Preobrazhenskaya et al. 1975
ATCC 33577 | DSM 43676 | IMET 9578 | JCM 3308, AF134067 | INA
292
Actinomadura cremea subsp. rifamycini VP Gauze et al. 1987 ATCC
33264, AF051379 | DSM 43936 | NBRC 14183, U49003, Amd.cremea
| INA 1349 | JCM 3309 | KCC A-0309 | NCIB 12768 | NRRL B-16122 |
VKM Ac 1095
294
Actinomadura echinospora VP (Nonomura and Ohara 1971) Kroppenstedt

et al. 1991 <- Microbispora echinospora (basonym) Mb3-1, U49004
| ATCC 27300 | DSM 43163 | NBRC 14042, U49004, Amd.echino | JCM
3148
Actinomadura fastidiosa AL Soina et al. 1975 -> Microtetraspora fastid-
iosa ATCC 33516 | DSM 43674 | NBRC 14680, U48844, Nm.fastidi |
INMI 104 | JCM 3321 | VKM Ac-804
Actinomadura ferruginea VP Meyer 1981 -> Microtetraspora ferruginea
487-2 | ATCC 35575 | DSM 43553 | NBRC 14094, U48845, Nm.ferrugi
| IMET 9567 | JCM 3283 | NCIB 11630 | NRRL B-16096
Actinomadura ?brosa VP Mertz and Yao 1990 A82810.1 | ATCC 49459,

AF163114 | DSM 44224 | NRRL 18348
Actinomadura ?ava AL Gauze et al. 1974 -> Nocardiopsis ?ava ATCC
29533 | DSM 43885 | INA 2171 | JCM 3296 | KCC A-0296 | NCIB 11447
Actinomadura ?exuosa VP (ex Cross and Goodfellow 1973) Meyer 1989 ->
Nonomuraea ?exuosa 435 | ATCC 35864 | DSM 43186 | NBRC 14349
| JCM 3056 | KCC A-0056
Actinomadura formosensis VP (Hasegawa et al. 1986) Zhang et al. 1998 <-

Thermomonospora formosensis (basonym) C-36820 | ATCC 49059 |
DSM 43997 | NBRC 14204 | JCM 7474, AF002263, Amd.frmosn
Actinomadura fulvescens VP Terekhova et al. 1987 DSM 43923 | NBRC
14347, U49005, Amd.fulves | IMET 974 | INA 3321 | JCM 6833 | VKM
Ac 938
Actinomadura glauci?ava VP Lu et al. 2003 80-60 | AS 4.1202, AF153881
| NBRC 14668 | JCM 16161
Actinomadura glomerata VP Itoh et al. 1996 -> Actinocorallia glomerata

I-226, D50660, Amd.glomer | DSM 44360 | NBRC 15960 | JCM 9376,
AF134068, D50660, Amd.glomer

Actinomadura helvata AL Nonomura and Ohara 1971 -> Microtetraspora
helvata FYU A-105 | ATCC 27295, AF051381 | DSM 43142 | IMET
9584 | KCC A-0143
Actinomadura hibisca VP Tomita et al. 1991 P157-2 | SA 26015 | ATCC
53557 | DSM 44148, AJ420136 | JCM 9627, AF163115 | NBRC 15177
| NCIMB 13253
Actinomadura kijaniata VP Horan and Brodsky 1982 13-363 | SCC 1256

| ATCC 31588 | DSM 43764, X97890, Amd.kijan2 | NBRC 14229,
U49006, Amd.kijani | IMET 9741 | JCM 3306 | VKM Ac-874

Actinomadura latina VP Trujillo and Goodfellow 1997 A10 | DSM 43382,
AY035998
Actinomadura libanotica VP Meyer 1981 -> Actinocorallia libanot-
ica 828-21 | ATCC 35576 | DSM 43554 | NBRC 14095, U49007,
Amd.libano | IMET 9616 | JCM 3284 | KCC A-0284 | NCIB 11686 |
NRRL B-16097
Actinomadura livida AL Lavrova and Preobrazhenskaya 1975 ATCC 33578
| DSM 43677 | IMET 9575 | JCM 3387, AF163116 | INA 1678
Actinomadura longicatena VP Itoh et al. 1996 -> Actinocorallia longi-

catena I-497 | CIP 105488 | DSM 44361 | NBRC 15961 | JCM 9377,
AF163117
Actinomadura longispora AL Preobrazhenskaya and Sveshnikova 1974
-> Nocardiopsis longispora ATCC 35109 | DSM 43749, X76964,
Sct.longis | IMET 9603 | INA 10222
Actinomadura luteo?uorescens AL (Shinobu 1962) Preobrazhenskaya et
al. 1975 ATCC 25469 | CBS 702.69 | DSM 40398 | NBRC 13057,
U49008, Amd.lut?u | IMET 9672 | ISP 5398 | JCM 4203 | KCC S-0203 |
KCC S-0491 | RIA 1249
295
Actinomadura macra VP Huang 1980 FD 25934 | ATCC 31286 | DSM 43862

| NBRC 14102, U49009, Amd.macra | IMET 9754 | JCM 3287 | KCC
A-0287
Actinomadura malachitica AL Lavrova et al. 1972 = Actinomadura viridis
(senior heterotypic synonym) ATCC 27888 | DSM 43462 | IMET 9581
| INA 1920
Actinomadura mexicana VP Quintana et al. 2004 A290, AF277195 | DSM

44485 | NRRL B-24203
Actinomadura meyerii VP Quintana et al. 2004 A288, AY273787 | DSM
44715 | NRRL B-24247
Actinomadura namibiensis VP Wink et al. 2003 HAG 010767 | DSM 44197,
AJ420134 | NRRL B-24153
Actinomadura nitritigenes VP Lipski and Altendorf 1995 L46 | DSM 44137,
AY035999 | NBRC 15918
Actinomadura oligospora VP Mertz and Yao 1986 A80190.1 | ATCC 43269,
AF163118 | NRRL 15878
Actinomadura pelletieri AL (Laveran 1906) Lechevalier and Lechevalier
1970 ATCC 33385 | DSM 43383 | IMET 9693 | JCM 3388, AF163119
| NCTC 4162
Actinomadura polychroma VP Galatenko et al. 1987 -> Microtetraspora

polychroma ATCC 49500 | DSM 43925 | NBRC 14345, U48977,
Nm.plychrm | IMET 9743 | INA 2755 | NRRL B-16243 | VKM Ac 1084
Actinomadura pusilla AL Nonomura and Ohara 1971 -> Microtetraspora
pusilla A-118 | ATCC 27296 | CBS 262.72 | DSM 43357 | NBRC
14684, D85491, Nm.pusilla | NBRC 14684, U48978, Nm.pussil2 |
KCC A-0144 | NCIMB 11116
Actinomadura recticatena VP Terekhova et al. 1987 -> Microtetraspora
recticatena DSM 43937 | NBRC 14525, U48979, Nm.rectica | INA
308 | VKM Ac-940
Actinomadura roseola AL Lavrova and Preobrazhenskaya 1975 -> Mi-
crotetraspora roseola ATCC 33579 | DSM 43767 | NBRC 14685,
U48980, Nm.salmone | IMET 9576 | INA 1671 | JCM 3323 | KCC
A-0323
Actinomadura roseoviolacea AL Nonomura and Ohara 1971 -> Microte-
traspora roseoviolacea A-5 | ATCC 27297 | DSM 43144 | NBRC
14098, AB039959 | IMET 9751 | KCC A-0145
Actinomadura rubra AL (Sveshnikova et al. 1969) Meyer and Svesh-
nikova 1974 -> Microtetraspora rubra ATCC 27031 | CBS 132.76 |
DSM 43768, AF277200 | NBRC 14070 | IMET 8181 | JCM 3234 | KCC
A-0234 | VKM Ac-615
Actinomadura rubrobrunea VP (ex Krasil nikov et al. 1968) Kroppenstedt
et al. 1991 2991 | P157-2 | ATCC 53557 | DSM 43750 | NBRC 15178 |
IMET 9705 | JCM 7345
Actinomadura rugatobispora VP (Miyadoh et al. 1985) Miyadoh et al. 1991
<- Microbispora viridis (basonym) SF-2240 | DSM 44130 | NBRC
14382, U49010, Amd.rugato | JCM 3366 | NRRL B-16566
Actinomadura salmonea AL Preobrazhenskaya et al. 1975 -> Microte-
traspora salmonea ATCC 33580 | DSM 43678, X97892, Mtt.salmon
| IMET 9582 | INA 2488
Actinomadura spadix AL Nonomura and Ohara 1971 FYU A 116 | ATCC

27298 | CBS 261.72 | DSM 43459, AF277201 | NBRC 14099 | IMET
9752 | JCM 3146, AF163120 | KCC A-0146 | NCIB 11118
Actinomadura spiralis VP Meyer 1981 -> Microtetraspora spiralis
832-34 | ATCC 35114 | CCM 3426 | DSM 43555 | NBRC 14097,
296
U48983, Nm.spirali | IMET 9621 | JCM 3286 | KCC A-0286 | NCIB

11633 | NRRL B-16098
Actinomadura turkmeniaca VP Terekhova et al. 1982 -> Microtetraspora
turkmeniaca ATCC 49501 | DSM 43926, AF277201 | NBRC 14348 |
IMET 9746 | INA 3344 | VKM Ac 852
Actinomadura umbrina VP Galatenko et al. 1987 Ac 1086 | ATCC 49502
| DSM 43927 | NBRC 14346 | IMET 9746 | INA 2309 | JCM 6837,
AF163121 | VKM Ac 1086

Actinomadura verrucosospora AL Nonomura and Ohara 1971 FYU A-184
| ATCC 27299 | DSM 43358 | DSM 43550 | NBRC 14100, U49011,
Amd.verruc | IMET 9588 | JCM 3147, D50667, Amd.verru2 | KCC

A-0147
Actinomadura vinacea AL Lavrova and Preobrazhenskaya 1975 ATCC
33581 | DSM 43765 | NBRC 14688 | IMET 9574 | INA 1682 | JCM
3325, AF134070 | KCC A-0325
Actinomadura viridilutea VP (Agre and Guzeva 1975) Zhang et al. 2001
467
<- Excellospora viridilutea (basonym) ATCC 33925 | DSM 43934
| DSM 44433 | NBRC 14480, D86943, Exs.viridi | IMET 9742 | INMI
187 | JCM 3398 | JCM 7346

Actinomadura viridis VP (Nonomura and Ohara 1971) Miyadoh et al. 1989
<- Microtetraspora viridis (basonym) = Actinomadura malachitica
(junior heterotypic synonym) Mt-1 | ATCC 27103 | CBS 833.70 | DSM
43175 | NBRC 15238, D85467, Amd.viridi | IMET 9546 | JCM 3112 |
KCC A-0112
Actinomadura yumaensis VP Labeda et al. 1985 LL-C23024 | JCM 3369,
AF163122 | NRRL 12515
Genus III. Spirillospora AL
Spirillospora albida AL (T) Couch 1963 ATCC 15331 | CBS 291.64 | DSM
43034 | NBRC 12248, D85498, Ssp.albida | IMET 9031 | KCC A-0041
| UNCC 1030
Spirillospora rubra VP Vobis and Kothe 1989 CBS 571.75

Suborder XVI. Frankineae VP
Family I. Frankiaceae AL
Genus I. Frankia AL (T)
Frankia alni AL (T) (Woronin 1866) Von Tubeuf 1895
Family II. "Geodermatophilaceae"
Genus I. Geodermatophilus AL
Geodermatophilus obscurus AL (T) Luedemann 1968 G-20 | ATCC 25078 |
CBS 237.69 | DSM 43160, X92356, Gdp.obscu2 | IAM 14282 | NBRC
13315 | JCM 3152 | KCC A-0152
Genus II. Blastococcus AL
Blastococcus aggregatus AL (T) Ahrens and Moll 1970 B15 | ATCC 25902 |
ATCC 25902, L40614, Blc.aggreg | DSM 4725
Genus III. Modestobacter VP
Modestobacter multiseptatus VP Mevs et al. 2000 AA-826, Y18646 | DSM
44406
Family III. Microsphaeraceae VP
Genus I. Microsphaera VP (T)
Microsphaera multipartita VP (T) Yoshimi et al.1996 Y-104, D50066,
Ms.mulpart | DSM 44233 | JCM 9543, Y08541, Ms.mulpar2
Family IV. Sporichthyaceae VP
Genus I. Sporichthya AL (T)
46 7
297
Sporichthya polymorpha AL (T) Lechevalier et al. 1968 ATCC 23823 | DSM

43042 | NBRC 12702, AB025317 | IMRU 3913 | KCC A-0089
Sporichthya brevicatena VP Tamura et al. 1999 YU720-21, AB006164 |
NBRC 16195
Family V. Acidothermaceae VP
Genus I. Acidothermus VP (T)
Acidothermus cellulolyticus VP (T) Mohagheghi et al. 1986 11B | ATCC
43068, X70635, Acdt.cellu | DSM 8971
Family VI. "Kineosporiaceae" 468
Genus I. Kineosporia AL
Kineosporia aurantiaca AL (T) Pagani and Parenti 1978 A/10312 | ATCC
29727, X87110, Ks.auranti | DSM 43858 | NBRC 13890 | NBRC 14067,
D86937, Ks.aurant3 | JCM 3230, AB003931, Ks.aurant2 | KCC A-0230
Kineosporia mikuniensis VP Kudo et al. 1998 I-463 | JCM 9961
Kineosporia rhamnosa VP Kudo et al. 1998 I-132, AB003935, Ks.rhamno2
| JCM 9954, AB003935, Ks.rhamno2
Kineosporia rhizophila VP Kudo et al. 1998 I-449, AB003933, Ks.rhizoph

| JCM 9960, AB003933, Ks.rhizoph
Kineosporia succinea VP Kudo et al. 1998 I-273, AB003932, Ks.succine |

JCM 9957, AB003932, Ks.succine
Genus II. Cryptosporangium VP
Cryptosporangium arvum VP (T) Tamura et al. 1998 YU 629-21, D85465,
Cs.arvum1 | NBRC 15965, D85465, Cs.arvum1
Cryptosporangium aurantiacum VP Tamura and Hatano 2001 469 71C38 |
DSM 46144 | NBRC 13967, AB047490 | JCM 3241
Cryptosporangium japonicum VP Tamura et al. 1998 YU 636-3, D85466,
Cs.japonic | NBRC 15966, D85466, Cs.japonic
Cryptosporangium minutisporangium VP (Ruan et al. 1986) Tamura and
Hatano 2001 <- Actinoplanes minutisporangius (basonym) A-60 |
LL-A-60 | IMRU LL-A-6 | ATCC 49415 | NBRC 15962, AB037007 |
JCM 9458
Genus III. Kineococcus VP
Kineococcus aurantiacus VP (T) Yokota et al. 1993 RA 333 | DSM 7487,
D17527, Knc.aurnat | NBRC 15268, X77958, Knc.aurna2
Kineococcus radiotolerans VP Phillips et al. 2002 SRS30216, AF247813 |
Suborder XVII. Glycomycineae VP
Family I. Glycomycetaceae VP
Genus I. Glycomyces VP (T)
Glycomyces harbinensis VP (T) Labeda et al. 1985 LL-DO5139 | ATCC
43155 | DSM 46494 | IAM 14283 | NBRC 14487, D85483, Gm.harb-
nen | IMET 43812 | JCM 7347 | NRRL 15337
Glycomyces rutgersensis VP Labeda et al. 1985 LL-I-20 | ATCC 43156 |
DSM 43812 | IMET 43813 | NBRC 14488, D85484 | NRRL B-16106
Glycomyces tenuis VP Evtushenko et al. 1991 ATCC 49849 | DSM 44171
| NBRC 15904, D85482, Gm.tenuis1 | INA n-5888 | JCM 9087 | VKM
Ac-1250
Order II. Bi?dobacteriales VP 470
Family I. Bi?dobacteriaceae VP
Genus I. Bi?dobacterium AL (T)
46 8
L udwig indica tes that ARB tree may no t suppo rt this p lac em ent. Unpu blish ed d ata o f G arrity and Se arles s upp orts this fa mily.
46 9
47 0
Althou gh Ludw ig has exp re ssed some reserva tio ns ab out the plac eme nt o f t he Bifdob act eriales , PCA p lots (G arrity and Lilb urn) c le arly
show the Bi?doba cte ria a re rem ove d f ro m t he main lin eage s of Ac tin obac teria.
298
Bi?dobacterium bi?dum AL (T) (Tissier 1900) Orla-Jensen 1924 ATCC 29521,

M38018, Bif.bi?du | DSM 20456, S83624, Bif.bi? d3 | JCM 1255 | Ti
Bi?dobacterium adolescentis AL Reuter 1963 biotype a | E194a | ATCC 15703,
M58729, Bif.adoles | DSM 20083 | NCTC 11814
Bi?dobacterium angulatum AL Scardovi and Crociani 1974 B677 | ATCC 27535,
D86182 | DSM 20098
Bi?dobacterium animalis AL (Mitsuoka 1969) Scardovi and Trovatelli 1974
R101-8 | ATCC 25527, X70971, Bif.animal | DSM 20104
Bi?dobacterium asteroides AL Scardovi and Trovatelli 1969 C51 | ATCC 25910,
M58730, Bif.astero | DSM 20089 | JCM 8230
Bi?dobacterium boum AL Scardovi et al. 1979 RU917 | ATCC 27917 | DSM 20432
| JCM 1211, D86190
Bi?dobacterium breve AL Reuter 1963 S1 | ATCC 15700, M58731, Bif.breve |

DSM 20213 | NCTC 11815
Bi?dobacterium catenulatum AL Scardovi and Crociani 1974 B669 | ATCC 27539,
M58732, Bif.catenu | DSM 20103
Bi?dobacterium choerinum AL Scardovi et al. 1979 ATCC 27686, D86186 | DSM
20434 | SU806
Bi?dobacterium coryneforme VP Biavati et al. 1982 C-215 | ATCC 25911,
M58733, Bif.coryne | DSM 20216
Bi?dobacterium cuniculi AL Scardovi et al. 1979 ATCC 27916, M58734, Bif.cu-
nicu | DSM 20435 | RA93
Bi?dobacterium denticolens VP Crociani et al. 1996 -> Parascardovia denti-
colens B3028 | AS1.2280, AF240565 | DSM 10105, D89331
Bi?dobacterium dentium AL Scardovi and Crociani 1974 B764 | ATCC 27534,
D86183 | DSM 20436
Bi?dobacterium gallicum VP Lauer 1990 P6 | ATCC 49850 | DSM 20093 | JCM
8224, D86189
Bi?dobacterium gallinarum VP Watabe et al. 1983 Ch206-5 | ATCC 33777 | DSM
20670 | JCM 6291, D86191
Bi?dobacterium globosum VP (ex Scardovi et al. 1969) Biavati et al. 1982 ->
Bi?dobacterium pseudolongum subsp. globosum RU 224 | ATCC 25865,
M58736, Bif.plongl | DSM 20092
Bi?dobacterium indicum AL Scardovi and Trovatelli 1969 C 410 | ATCC 25912,
M58737, Bif.indicm | DSM 20214
Bi?dobacterium infantis AL Reuter 1963 S12 | ATCC 15697, X70974, Bif.infan6
| DSM 20088 | NCTC 11817
Bi?dobacterium inopinatum VP Crociani et al. 1996 -> Scardovia inopinata

B3109 | DSM 10107, AB029087
Bi?dobacterium lactis VP Meile et al. 1997 UR1, X89513, Bif.lactis | CIP 105265
| DSM 10140, X89513, Bif.lactis
Bi?dobacterium longum AL Reuter 1963 E194b | ATCC 15707, M58739,

Bif.longum | DSM 20219 | NCTC 11818
Bi?dobacterium magnum AL Scardovi and Zani 1974 RA3 | ATCC 27540,
M58740, Bif.magnum | DSM 20222
Bi?dobacterium merycicum VP Biavati and Mattarelli 1991 Ru915B | ATCC
49391 | DSM 6492 | JCM 8219, D86192
Bi?dobacterium minimum VP Biavati et al. 1982 F392 | ATCC 27538, M58741 |
DSM 20102
Bi?dobacterium pseudocatenulatum AL Scardovi et al. 1979 B1279 | ATCC 27919
| DSM 20438 | JCM 1200, D86187
Bi?dobacterium pseudolongum subsp. pseudolongum AL Mitsuoka 1969

PNC-2-9G | ATCC 25526, M58742, Bif.plonpl | DSM 20099
299
Bi?dobacterium pseudolongum subsp. globosum VP (Biavati et al. 1982)

Yaeshima et al. 1992 <- Bi?dobacterium globosum (basonym) RU 224 |
ATCC 25865, M58736, Bif.plongl | DSM 20092
Bi?dobacterium psychraerophilum VP Simpson et al. 2004 T16, AY174108 |
LMG 21775 | NCIMB 13940
Bi?dobacterium pullorum AL Trovatelli et al. 1974 1145 | ATCC 27685 | DSM
20433 | JCM 1214, D86196
Bi?dobacterium ruminantium VP Biavati and Mattarelli 1991 Ru687 | ATCC
49390 | DSM 6489 | JCM 8222, D86197
Bi?dobacterium saeculare VP Biavati et al. 1992 RA161 | ATCC 49392 | DSM
6531, D89328
Bi?dobacterium scardovii VP Hoyles et al. 2002 CCUG 13008, AJ307005 | DSM
13734
Bi?dobacterium subtile VP Biavati et al. 1982 F395 | ATCC 27537 | DSM 20096,
D89378
Bi?dobacterium suis AL Matteuzzi et al. 1971 SU859 | ATCC 27533, M58743,
Bif.suis | DSM 20211
Bi?dobacterium thermacidophilum VP Dong et al. 2000 AS 1.2282 | 36,
AB016246
Bi?dobacterium thermophilum AL Mitsuoka 1969 P2-91 | ATCC 25525, U10151,
Bif.thphil | DSM 20210
Genus II. Aeriscardovia VP
Aeriscardovia aeriphila VP Simpson et al. 2004 T6 | LMG 21773 | NCIMB 13939
Genus III. Falcivibrio VP
Falcivibrio grandis VP (T) Hammann et al. 1984 L23-1b | ATCC 43064 | DSM 2710
Falcivibrio vaginalis VP Hammann et al. 1984 V125 | ATCC 43063 | DSM 2711
Genus IV. Gardnerella VP
Gardnerella vaginalis VP (T) (Gardner and Dukes 1955) Greenwood and Pickett
1980 <- Haemophilus vaginalis (basonym) 594 | ATCC 14018, M58744,
Gar.vagina | CCUG 3717 | DSM 4944 | NCTC 10287
Genus V. Parascardovia VP
Parascardovia denticolens VP (T) (Crociani et al. 1996) Jian and Dong 2002 <-
Bi?dobacterium denticolens (basonym) B3028 | DSM 10105, D89331 |
AS1.2280
Genus VI. Scardovia VP
Scardovia inopinata VP (T) (Crociani et al. 1996) Jian and Dong 2002 <- Bi?dobac-
terium inopinatum (basonym) B3109 | AS1.2187 | DSM 10107, AB029087
Family II. Unknown Af?liation VP
Genus I. Actinobispora VP
Actinobispora yunnanensis VP (T) Jiang et al. 1991 -> Pseudonocardia yunna-
nensis Y-11981, AF056706, Abi.yunnan | CCTCC M 90959, AF056706,
Abi.yunnan | DSM 44253 | NBRC 15681, D85472, Abi.yunna2 | JCM 9330
Actinobispora alaniniphila VP Xu et al. 1999 -> Pseudonocardia alaniniphila
Y-16303, AF056708, Abi.alniph | CCTCC AA97001, AF056708, Abi.alniph
Actinobispora aurantiaca VP Xu et al. 1999 -> Pseudonocardia aurantiaca
Y-14860, AF056707, Abi.aurant | CCTCC AA97002, AF056707, Abi.aurant
Actinobispora xinjiangensis VP Xu et al. 1999 -> Actinobispora xinjiangensis
XJ-45, AF056709, Scm.xinjia | CCTCC AA97020, AF056709, Scm.xinjia
Genus II. Actinocorallia VP
Actinocorallia herbida VP (T) Iinuma et al. 1994 AL-50780 | ATCC 51528 | CIP
104066 | DSM 44254 | NBRC 15485, D85473, Acr.herbid | JCM 9647
Actinocorallia aurantiaca VP (Lavrova and Preobrazhenskaya 1975) Zhang et al.
2001 471 <- Actinomadura aurantiaca (basonym) DSM 43924 | IMET 9577
| INA 1933 | JCM 8201, AF134066, D50669, Amd.aurant
47 1
300
Actinocorallia glomerata VP (Itoh et al. 1996) Zhang et al. 2001 472 <- Actino-
madura glomerata (basonym) I-226, D50660, Amd.glomer | DSM 44360 |
NBRC 15960 | JCM 9376, AF134068, D50660, Amd.glomer
Actinocorallia libanotica VP (Meyer 1981) Zhang et al. 2001 473 <- Actinomadura
libanotica (basonym) 828-21 | ATCC 35576 | DSM 43554 | NBRC 14095,
U49007, Amd.libano | IMET 9616 | JCM 3284 | KCC A-0284 | NCIB 11686 |
NRRL B-16097
Actinocorallia longicatena VP (Itoh et al. 1996) Zhang et al. 2001 474 <- Acti-
nomadura longicatena (basonym) I-497 | CIP 105488 | DSM 44361 | NBRC
15961 | JCM 9377, AF163117, AF163117
Genus III. Excellospora AL
Excellospora viridilutea AL (T) Agre and Guzeva 1975 -> Actinomadura viridi-
lutea ATCC 33925 | DSM 43934 | NBRC 14480, D86943, Exs.viridi | IMET
9742 | INMI 187 | JCM 3398 | JCM 7346
Genus IV. Pelczaria VP
Pelczaria aurantia VP (T) Poston 1994 ATCC 49321
Genus V. Turicella VP
Turicella otitidis VP (T) Funke et al. 1994 GF 234/92, X73976, Tur.otitid | ATCC
51513 | DSM 8821
Phylum BXV. " Planctomycetes " 475
Class I. "Planctomycetacia"
Order I. Planctomycetales VP
Family I. Planctomycetaceae VP
Genus I. Planctomyces AL (T)
Planctomyces beke?i AL (T) Gimesi 1924
Planctomyces brasiliensis VP Schlesner 1990 ATCC 49424, X85247, Pln.brasi2 | DSM
5305, X81949, Pln.brasil | DSM 5305, AJ231190, Pln.brasi3 | IFAM 1448
Planctomyces guttaeformis VP (ex Hortobagyi 1965) Starr and Schmidt 1984
Planctomyces limnophilus VP Hirsch and Mller 1986 290 | ATCC 43296 | DSM 3776 |
IFAM 1008, X62911, Pln.limnop
Planctomyces maris VP Bould and Staley 1980 534-30 | ATCC 29201, X62910,
Pln.maris | DSM 8797, AJ231184, Pln.maris2
Planctomyces stranskae VP (ex Warwick 1952) Starr and Schmidt 1984
Genus II. Gemmata VP
Gemmata obscuriglobus VP (T) Franzmann and Skerman 1985 DSM 5831 | DSM 5831,
AJ231191, Gmt.obscu4 | UQM 2246, X54522, Gmt.obscu2 | UQM 2246, X56305,
Gmt.obscur
Genus III. Isosphaera VP
Isosphaera pallida VP (T) Giovannoni et al. 1995 IS1B | ATCC 43644 | DSM 9630,
AJ231195, Iso.palli3
Genus IV. Pirellula VP
Pirellula staleyi VP (T) (Schlesner and Hirsch 1984) Schlesner and Hirsch 1987 <- Pirella
staleyi (basonym) ATCC 27377, M34126, Pir.staley | DSM 6068, AJ231183,
Pir.stale3 | DSM 940
Pirellula marina VP (Schlesner 1987) Schlesner and Hirsch 1987 <- Pirella marina (ba-
sonym) ATCC 49069 | DSM 3645 | IFAM 1313, X62912, Pir.marina
Phylum BXVI. "Chlamydiae "
47 2
47 3
47 4
47 5
The re is suppo rt in th e AR B an d RDP trees for the phylu m Planc tom yc ete s. Ludwig n otes that the P la nct omy ce s/ Pire llu la group to geth er
as do G em mat a/Isospharea . In P CA p lot s G arrity and Lilbu rn sho w the latte r t o be f ar re mov ed. Th e s pread o f points se ems c ons is tent with
Lu dwig s vie w t hat the ph ylum is dive rse.
301
Class I. Chlamydiae VP
Order I. Chlamydiales AL (T)
Family I. Chlamydiaceae AL
Genus I. Chlamydia AL (T)
Chlamydia trachomatis AL (T) (Busacca 1935) Rake 1957 emend. Everett et al. 1999
A/HAR-13, U68438, Clm.trach2 | A/HAR-13, D89067, Clm.trach4 | ATCC VR 571
| ATCC VR 571B
Chlamydia muridarum VP Everett et al. 1999 MoPn, D85718, Clm.murdar | ATCC VR

123
Chlamydia pecorum VP Fukushi and Hirai 1992 -> Chlamydophila pecorum Bo/E58,
D88317 | ATCC VR628
Chlamydia pneumoniae VP Grayston et al. 1989 -> Chlamydophila pneumoniae
TW-183, U76711, Chd.pneum6 | ATCC VR 2282
Chlamydia psittaci AL (Lillie 1930) Page 1968 -> Chlamydophila psittaci 6BC,
AB001778 | 6BC, M13769 | ATCC VR 125, U68447, Chd.psitt4
Chlamydia suis VP Everett et al. 1999 S45, U73110, Clm.suis1 | ATCC VR 1474
Genus II. Chlamydophila VP
Chlamydophila psittaci VP (T) (Lillie 1930) Everett et al. 1999 <- Chlamydia psittaci
(basonym) 6BC, M13769, Chd.psitta | 6BC, AB001778, Chd.psitt5 | ATCC VR
125, AB001778, Chd.psitt5
Chlamydophila abortus VP Everett et al. 1999 B577, AB001783, Chd.abort1 | B577,
D85709, Chd.abort1 | ATCC VR 656, AB001783, Chd.abort1 | ATCC VR 656,
D85709, Chd.abort2
Chlamydophila caviae VP Everett et al. 1999 GPIC, D85708, Chd.caviae | ATCC VR
813, D85708, Chd.caviae
Chlamydophila felis VP Everett et al. 1999 FP Baker, D85701, Chd.felis1 | ATCC VR
120, D85701, Chd.felis1
Chlamydophila pecorum VP (Fukushi and Hirai 1992) Everett et al. 1999 <- Chlamydia
pecorum (basonym) E58, D88317, Chd.pecorm | ATCC VR 628
Chlamydophila pneumoniae VP (Grayston et al. 1989) Everett et al. 1999 <- Chlamydia
pneumoniae (basonym) TW-183, Z49873, Chd.pneum3 | ATCC VR 2282
Family II. Parachlamydiaceae VP
Genus I. Parachlamydia VP (T)
Parachlamydia acanthamoebae VP (T) (Amann et al. 1997) Everett et al. 1999 Bn9,
Y07556, Pch.acanth | ATCC VR 1476
Genus II. Neochlamydia VP
Neochlamydia hartmannellae VP (T) Horn et al. 2001 476 A1Hsp, AF177275 | ATCC
50902
Family III. Simkaniaceae VP
Genus I. Simkania VP (T)
Simkania negevensis VP (T) Everett et al. 1999 Z, L27666 | ATCC VR 1471, Smk.negevn
Genus II. "Rhabdochlamydia "
Candidatus "Rhabdochlamydia porcellionis" AY223862
Family IV. Waddliaceae VP
Genus I. Waddlia VP (T)
Waddlia chondrophila VP (T) Rurangirwa et al. 1999 WSU 86-1044, AF042496,
Wd.chndrph | ATCC VR 1470
Phylum BXVII. Spirochaetes NP
Class I. "Spirochaetes"
Order I. Spirochaetales AL
Family I. Spirochaetaceae AL
Genus I. Spirochaeta AL (T)
47 6
302
Spirochaeta stenostrepta AL (T) Zuelzer 1912 Z1, M88724, Spi.stenos | ATCC 25083 |
DSM 2028
Spirochaeta africana VP Zhilina et al. 1996 Z-7692, X93928, Spi.africa | DSM 8902
Spirochaeta alkalica VP Zhilina et al. 1996 Z-7491, X93927, Spi.alkali | DSM 8900
Spirochaeta americana VP Hoover et al. 2003 ASpG1 | ATCC BAA-392 | DSM 14872,
AF373921
Spirochaeta asiatica VP Zhilina et al. 1996 Z-7591, X93926, Spi.asiati | DSM 8901
Spirochaeta aurantia subsp. aurantia VP Canale-Parola 1980 J1 | ATCC 25082,
M57740, Spi.aurant | DSM 1902
Spirochaeta aurantia subsp. stricta VP Canale-Parola 1984 J4T
Spirochaeta caldaria VP Pohlschroeder et al. 1995 ATCC 51460 | DSM 7334 | H1
Spirochaeta halophila AL Greenberg and Canale-Parola 1977 RS1, M88722, Spi.haloph
| ATCC 29478 | DSM 10522
Spirochaeta isovalerica VP Harwood and Canale-Parola 1983 MA-2, M88720, Spi.iso-

val | ATCC 33939 | DSM 2461
Spirochaeta litoralis VP Canale-Parola 1980 R 1 | ATCC 27000, M88723 | DSM 2029
Spirochaeta plicatilis AL Ehrenberg 1835
Spirochaeta smaragdinae VP Magot et al. 1998 DSM 11293, U80597, Spi.smarag |
SEBR 4228, U80597, Spi.smarag
Spirochaeta thermophila VP Aksenova et al. 1992 Z-1203 | DSM 6578
Spirochaeta zuelzerae VP Canale-Parola 1980 ATCC 19044, M88725 | DSM 1903
Genus II. Borrelia AL
Borrelia anserina AL (T) (Sakharoff 1891) Bergey et al. 1925
Borrelia afzelii VP Canica et al. 1994 VS461, AY342034 | ATCC 51567 | CIP 103469 |
DSM 10508
Borrelia baltazardii VP Karimi et al. 1983 B"x"
Borrelia brasiliensis AL Davis 1952
Borrelia burgdorferi VP Johnson et al. 1984 emend. Baranton et al. 1992 B31 | ATCC
35210, M59293, Bor.burgdo | DSM 4680
Borrelia caucasica AL (Kandelaki 1945) Davis 1957
Borrelia coriaceae VP Johnson et al. 1987 Co534, U42286 | ATCC 43381
Borrelia crocidurae AL (Leger 1971) Davis 1957
Borrelia dugesii AL (Mazzotti 1949) Davis 1957
Borrelia duttonii AL (Novy and Knapp 1906) Bergey et al. 1925
Borrelia garinii VP Baranton et al. 1992 20047 | ATCC 51383 | CIP 103362 | DSM 10534
Borrelia graingeri AL (Heisch 1953) Davis 1957
Borrelia harveyi AL (Garnham 1947) Davis 1948
Borrelia hermsii AL (Davis 1942) Steinhaus 1946
Borrelia hispanica AL (de Buen 1926) Steinhaus 1946
Borrelia japonica VP Kawabata et al. 1994 HO14, L46696, L40597 | JCM 8951
Borrelia latyschewii AL (So? ev 1941) Davis 1948
Borrelia lusitaniae VP Le Fleche et al. 1997 PotiB2, X98228
Borrelia mazzottii AL Davis 1956
Borrelia miyamotoi VP Fukunaga et al. 1995 HT31, D45192, Bor.miyamo | JCM 9579
Borrelia parkeri AL (Davis 1942) Steinhaus 1946
Borrelia persica AL (Dschunkowsky 1913) Steinhaus 1946
Borrelia recurrentis AL (Lebert 1874) Bergey et al. 1925
Borrelia sinica VP Masuzawa et al. 2001 477 CMN3, AB022101 | JCM 10505
Borrelia tanukii VP Fukunaga et al. 1997 Hk501, D67023 | JCM 9662
Borrelia theileri AL (Laveran 1903) Bergey et al. 1925
Borrelia tillae AL Zumpt and Organ 1961
Borrelia turdi VP Fukunaga et al. 1997 Ya501, D67022 | JCM 9661
Borrelia turicatae AL (Brumpt 1933) Steinhaus 1946
47 7
303
Borrelia valaisiana VP Wang et al. 1997 VS116, X98232

Borrelia venezuelensis AL (Brumpt 1921) Brumpt 1922
Genus III. Brevinema VP
Brevinema andersonii VP (T) Defosse et al. 1995 CT11616, M59179 | ATCC 43811
Genus IV. Clevelandina VP
Clevelandina reticulitermitidis VP (T) Bermudes et al. 1988
Genus V. Cristispira AL
Cristispira pectinis AL (T) Gross 1910
Genus VI. Diplocalyx VP
Diplocalyx calotermitidis VP (T) (ex Gharagozlou 1968) Bermudes et al. 1988
Genus VII. Hollandina VP
Hollandina pterotermitidis VP (T) (ex To et al. 1978) Bermudes et al. 1988
Genus VIII. Pillotina VP
Pillotina calotermitidis VP (T) (ex Gharagozlau 1968) Bermudes et al. 1988
Genus IX. Treponema AL
Treponema pallidum AL (T) (Schaudinn and Hoffmann 1905) Schaudinn 1905
Treponema amylovorum VP Wyss et al. 1997 HA2P, Y09959, Trp.amylvr | ATCC
700288
Treponema brennaborense VP Schrank et al. 1999 DD5/3, Y16568 | DSM 12168
Treponema bryantii VP Stanton and Canale-Parola 1980 RUS-1, M57737, Trp.bryant |
ATCC 33254, M57737, Trp.bryant | DSM 1788
Treponema denticola VP (ex Brumpt 1925) Chan et al. 1993 a | ATCC 35405, AF139204,
AF139203
Treponema hyodysenteriae AL Harris et al. 1972 -> Serpula hyodysenteriae B78,
M57743, Brs.hyoB78 | ATCC 27164 | IMET 2
Treponema innocens AL Kinyon and Harris 1979 -> Serpula innocens B256, M57744,
Brs.innocn | ATCC 29796
Treponema lecithinolyticum VP Wyss et al. 1999 OMZ 684 | PFB4G | ATCC 700332,
X87139
Treponema maltophilum VP Wyss et al. 1996 BR, X87140, Trp.maltop | ATCC 51939
Treponema medium VP Umemoto et al. 1997 G7201, D85437, Trp.medium
Treponema minutum AL Dobell 1912 CIPP 5162
Treponema paraluiscuniculi AL (Jacobsthal 1920) Smibert 1974
Treponema parvum VP Wyss et al. 2001 478 ATCC 700770 | OMZ 833, AF302937
Treponema pectinovorum VP Smibert and Burmeister 1983 ATCC 33768, M71237,
Trp.pectin | VPI D-36DR-2
Treponema pertenue AL (Castellani 1905) Castellani and Chalmers 1910
Treponema saccharophilum VP Paster and Canale-Parola 1986 PB | ATCC 43261,
M71238, Trp.saccha | DSM 2985
Treponema socranskii subsp. socranskii VP Smibert et al. 1984 ATCC 35536,
AF033306, Trp.scrsoc | VPI DR56BRIII6, AF033306, Trp.scrsoc
Treponema socranskii subsp. buccale VP Smibert et al. 1984 ATCC 35534, AF033305,
Trp.scrbuc | VPI D2B8
Treponema socranskii subsp. paredis VP Smibert et al. 1984 ATCC 35535, AF033307,
Trp.scrpar | VPI D46CPE1
Treponema succinifaciens VP Cwyk and Canale-Parola 1981 6091, M57738, Trp.succin
| ATCC 33096, M57738, Trp.succin | DSM 2489
Family II. "Serpulinaceae" 479

Genus I. Serpulina VP
Serpulina hyodysenteriae VP (T) (Harris et al. 1972) Stanton et al. 1991 <- Serpula
hyodysenteriae (basonym) -> Brachyspira hyodysenteriae B78, M57743,
Brs.hyoB78 | ATCC 27164 | IMET 2
47 8
47 9
Tim Lillb urn indica tes a po ssib le chang e to B rach yspira ce ae
304
Serpulina alvinipulli VP Stanton et al. 1998 -> Brachyspira alvinipulli C1

(91-1207/C1) | ATCC 51933
Serpulina innocens VP (Kinyon and Harris 1979) Stanton et al. 1991 <- Serpula in-
nocens (basonym) -> Brachyspira innocens B256, M57744, Brs.innocn | ATCC
29796
Serpulina intermedia VP Stanton et al. 1997 PWS/A | ATCC 51140 480
Serpulina murdochii VP Stanton et al. 1997 56-150, AY312492 | ATCC 51254
Serpulina pilosicoli VP Trott et al. 1996 -> Brachyspira pilosicoli P43/6/78 | ATCC
51139, AY155458
Genus II. Brachyspira VP
Brachyspira aalborgi VP (T) Hovind-Hougen et al. 1983 emend. Ochiai et al. 1997
513A | NCTC 11492, Z22781, Brs.aalbor
Brachyspira alvinipulli VP Stanton et al. 1998 <- Serpulina alvinipulli (basonym) C1
(91-1207/C1) | ATCC 51933
Brachyspira hyodysenteriae VP (Harris et al. 1972) Ochiai et al. 1998 <- Serpulina
hyodysenteriae (basonym) B78, M57743, Brs.hyoB78 | ATCC 27164 | IMET 2
Brachyspira innocens VP (Kinyon and Harris 1979) Ochiai et al. 1998 <- Serpulina
innocens (basonym) B256, M57744, Brs.innocn | ATCC 29796
Brachyspira pilosicoli VP (Trott et al. 1996) Ochiai et al. 1998 <- Serpulina pilosicoli
(basonym) P43/6/78 | ATCC 51139, AY155458
Family III. Leptospiraceae AL
Genus I. Leptospira AL (T)
Leptospira interrogans AL (T) (Stimson 1907) Wenyon 1926 emend. Faine and Stallman
1982 RGA, Z12817, Lps.interR | ATCC 43642
Leptospira alexanderi VP Brenner et al. 1999 L 60 | ATCC 700520
Leptospira bi?exa AL (Wolbach and Binger 1914) Noguchi 1918 emend. Faine and Stall-
man 1982 Patoc 1, Z12821, Lps.bi?ex | ATCC 23582
Leptospira borgpetersenii VP Yasuda et al. 1987 Veldrat Bataviae 46, Z21630,
Lps.borgp2 | ATCC 43292
Leptospira fainei VP Perolat et al. 1998 BUT 6
Leptospira inadai VP Yasuda et al. 1987 10 | ATCC 43289
Leptospira kirschneri VP Ramadass et al. 1992 3522 C, Z21628, Lps.kirsch
Leptospira meyeri VP Yasuda et al. 1987 Iowa City Frog, Z21648 | ATCC 43287
Leptospira noguchii VP Yasuda et al. 1987 CZ 214, Z21635, Lps.noguch | ATCC 43288
Leptospira parva VP Hovind-Hougen et al. 1982 H, Z21636, Lps.parva | NCTC 11395
Leptospira santarosai VP Yasuda et al. 1987 LT 821 | ATCC 43286
Leptospira weilii VP Yasuda et al. 1987 Celledoni, Z21637, Lps.weilii | ATCC 43285,
U12676, Lps.weili2
Leptospira wolbachii VP Yasuda et al. 1987 ATCC 43284 | CDC, Z21638, Lps.wolbac
Genus II. Leptonema VP
Leptonema illini VP (T) Hovind-Hougen 1983 3055, Z21632, Lpn.illin2 | NCTC 11301
Phylum BXVIII. Fibrobacteres"
"
Class I. "Fibrobacteres"
Order I. "Fibrobacterales"
Family I. "Fibrobacteraceae"
Genus I. Fibrobacter VP
Fibrobacter succinogenes subsp. succinogenes VP (T) (Hungate 1950) Montgomery et al.
1988 <- Bacteroides succinogenes (basonym) S85, M62696, Fib.sucS85 | ATCC
19169
Fibrobacter succinogenes subsp. elongatus VP Montgomery et al. 1988 HM2, M62689,
Fib.sucHM2 | ATCC 43856
48 0
The na mes Serpu lina in termed ia a nd Se rp ulina m urdoc hii were pu blish ed in IJS B prior to va lidation of th e trans fer of the t ype spe cies
S erpulina h yod ysent eriae to t he gen us B ra ch yspira , but afte r th e e ffec tiv e pub lica tion o f the pap er in which th is tra ns fer w as prop os ed. A
prop osa l to t ra nsf er S . interme dia an d S . m urdochii to h as not y et been pub lish ed.
305
Fibrobacter intestinalis VP Montgomery et al. 1988 NR9, M62695, Fib.intNR9 | ATCC

43854
Phylum BXIX. "Acidobacteria "
Class I. Acidobacteria VP
Order I. Acidobacteriales VP (T)
Family I. "Acidobacteriaceae"
Genus I. Acidobacterium VP
Acidobacterium capsulatum VP (T) Kishimoto et al. 1991 161 | ATCC 51196 | DSM 11244
| JCM 7670 | NCIMB 13165
Genus II. Geothrix VP

Geothrix fermentans VP (T) Coates et al. 1999 H-5 | ATCC 700665, U41563
Genus III. Holophaga VP
Holophaga foetida VP (T) Liesack et al. 1995 TMBS4, X77215, Hp.foetida | DSM 6591,
X77215, Hp.foetida
Phylum BXX. "Bacteroidetes "
Class I. "Bacteroidetes"
Order I. "Bacteroidales"
Family I. Bacteroidaceae AL
Genus I. Bacteroides AL (T)
Bacteroides fragilis AL (T) (Veillon and Zuber 1898) Castellani and Chalmers 1919 EN-2
| ATCC 25285, X83935, Bac.fragi3 | DSM 2151 | NCTC 9343 | VPI 2553
Bacteroides acidifaciens VP Miyamoto and Itoh 2000 A40, AB021164 | JCM 10556
Bacteroides amylophilus AL Hamlin and Hungate 1956 -> Ruminobacter amylophilus
H 18 | ATCC 29744, Y15992, Rum.amylo2 | DSM 1361, Y15992, Rum.amylo2 |
VPI 2502 B
Bacteroides asaccharolyticus AL (Holdeman and Moore 1970) Finegold and Barnes
1977 -> Porphyromonas asaccharolytica ATCC 25260, L16490, Ppm.asacch |
DSM 20707 | VPI 4198
Bacteroides bivius AL Holdeman and Johnson 1977 -> Prevotella bivia 653C | ATCC
29303, L16475, Prv.bivia | DSM 20514 | NCTC 11156 | VPI 6822
Bacteroides buccae VP Holdeman et al. 1982 = Bacteroides capillus (junior heterotypic
synonym) = Bacteroides pentosaceus (junior heterotypic synonym) -> Prevotella
buccae ATCC 33574, L16477, Prv.buccae | DSM 20615 | VPI D3A-6
Bacteroides buccalis VP Shah and Collins 1982 -> Prevotella buccalis HS4 | ATCC
35310, L16476, Prv.buccls | DSM 20616 | NCDO 2354
Bacteroides caccae VP Johnson et al. 1986 ATCC 43185, X83951, Bac.caccae | VPI
3452A
Bacteroides capillosus AL (Tissier 1908) Kelly 1957 ATCC 29799, AY136666
Bacteroides capillus VP Kornmann and Holt 1982 = Bacteroides buccae (senior het-
erotypic synonym) 938.11 | ATCC 33690, L16478, Prv.bucca2
Bacteroides cellulosolvens VP Murray et al. 1984 WM2 | ATCC 35603, L35517,
Bac.cellul | DSM 2933 | NRCC 2944
Bacteroides coagulans AL Eggerth and Gagnon 1933 EUH 581-73 | ATCC 29798 | DSM
20705 | VPI 8755
Bacteroides corporis VP Johnson and Holdeman 1983 -> Prevotella corporis Lambe
532-70A | ATCC 33547, L16465, Prv.corpor | VPI 9342
Bacteroides denticola VP Shah and Collins 1982 emend. Holdeman and Johnson 1982
-> Prevotella denticola 1210 | ATCC 35308, L16467, Prv.dentic | DSM 20614 |
NCDO 2352
Bacteroides disiens VP Holdeman and Johnson 1977 -> Prevotella disiens 1304-72B |
ATCC 29426, L16483, Prv.disien | DSM 20516 | NCTC 11157 | VPI 8057
Bacteroides distasonis AL Eggerth and Gagnon 1933 ATCC 8503, M86695, Bac.distas
| DSM 20701 | NCTC 11152
Bacteroides eggerthii AL Holdeman and Moore 1974 ATCC 27754 | DSM 20697 | NCTC
11155, L16485, Bac.eggert | VPI T5-42B-1
306
Bacteroides endodontalis VP van Steenbergen et al. 1984 -> Porphyromonas endodon-

talis HG370 | ATCC 35406, L16491, Ppm.endodo
Bacteroides forsythus VP Tanner et al. 1986 -> Tannerella forsythensis ATCC 43037 |
FDC 338, L16495, Bac.fsyths
Bacteroides furcosus AL (Veillon and Zuber 1898) Hauduroy et al. 1937 -> Anaerorhab-
dus furcosa T-301-A2 | ATCC 25662 | VPI 3253
Bacteroides galacturonicus VP Jensen and Canale-Parola 1987 N6 | ATCC 43244 | DSM
3978
Bacteroides gingivalis VP Coykendall et al. 1980 -> Porphyromonas gingivalis 2561 |
ATCC 33277, L16492, Ppm.gingiv | DSM 20709
Bacteroides gracilis VP Tanner et al. 1981 -> Campylobacter gracilis ATCC 33236,
L04320, Cam.gracil | CCUG 27720 | FDC 1084 | NCTC 12738
Bacteroides helcogenes VP Benno et al. 1983 P 36-108 | ATCC 35417 | DSM 20613
Bacteroides heparinolyticus VP Okuda et al. 1985 -> Prevotella heparinolytica HEP |
ATCC 35895, L16487, Prv.heplyt
Bacteroides hypermegas AL Harrison and Hansen 1963 -> Megamonas hypermegale
EBF 61/42 | ATCC 25560 | DSM 1672, AJ420107 | DSM 20631 | NCTC 10570
Bacteroides intermedius VP (Holdeman and Moore 1970) Johnson and Holdeman 1983
<- Bacteroides melaninogenicus subsp. intermedius (basonym) -> Prevotella in-
termedia B422 | ATCC 25611, L16468, Prv.interm | ATCC 25611, X73965, Prv.in-
ter2 | DSM 20706 | VPI 4197
Bacteroides levii VP (ex Holdeman et al. 1977) Johnson and Holdeman 1983 -> Por-
phyromonas levii LEV | ATCC 29147, L16493, Ppm.levii | VPI 10450 | VPI 3300
Bacteroides loescheii VP Holdeman and Johnson 1982 -> Prevotella loescheii 8B |
ATCC 15930, L16481, Prv.loesch | NCTC 11321 | VPI 9085
Bacteroides macacae VP (Slots and Genco 1980) Coykendall et al. 1980 <- Bacteroides
melaninogenicus subsp. macacae (basonym) -> Porphyromonas macacae 7728-
L6C | ATCC 33141, L16494, Ppm.macaca | DSM 20710
Bacteroides melaninogenicus subsp. melaninogenicus AL (Oliver and Wherry 1921)
Holdeman and Moore 1970 -> Prevotella melaninogenica B282 | ATCC 25845,
L16469, Prv.melani | DSM 7089 | JCM 6325 | VPI 2381
Bacteroides melaninogenicus subsp. intermedius AL Holdeman and Moore 1970 ->
Bacteroides intermedius B422 | ATCC 25611, L16468, Prv.interm | DSM 20706 |
VPI 4197
Bacteroides melaninogenicus subsp. macacae VP Slots and Genco 1980 -> Bacteroides
macacae 7728-L6C | ATCC 33141, L16494, Ppm.macaca | DSM 20710
Bacteroides merdae VP Johnson et al. 1986 ATCC 43184, X83954, Bac.merdae | VPI
T4-1
Bacteroides microfusus AL Kaneuchi and Mitsuoka 1978 -> Rikenella microfusus
ATCC 29728, L16498, Rik.mifusu | NCTC 11190
Bacteroides multiacidus AL Mitsuoka et al. 1974 -> Mitsuokella multacida A 405-1 |
ATCC 27723 | DSM 20544 | NCTC 10934, X81878, Msk.mulcid
Bacteroides nodosus AL (Beveridge 1941) Mraz 1963 -> Dichelobacter nodosus ATCC
25549 | DSM 20708 | VPI 2340
Bacteroides ochraceus AL Prevot et al. 1956 -> Capnocytophaga ochracea ATCC
27872, U41350, Cap.ochra3 | DSM 7271 | VPI 2845
Bacteroides oralis AL Loesche et al. 1964 -> Prevotella oralis ATCC 33269, L16480,
Prv.oralis | DSM 20702 | NCTC 11459 | VPI D27B-24
Bacteroides oris VP Holdeman et al. 1982 -> Prevotella oris ATCC 33573, L16474,
Prv.oris | VPI DIA-1A
Bacteroides oulorum VP Shah et al. 1985 -> Prevotella oulorum WPH 179 | ATCC
43324, L16472, Prv.oulora | NCTC 11871
Bacteroides ovatus AL Eggerth and Gagnon 1933 ATCC 8483, X83952, Bac.ovatu2 |
DSM 1896 | NCTC 11153, L16484, Bac.ovatus
Bacteroides pectinophilus VP Jensen and Canale-Parola 1987 N3 | ATCC 43243
307
Bacteroides pentosaceus VP Shah and Collins 1982 = Bacteroides buccae (senior het-
erotypic synonym) NCDO 2353
Bacteroides pneumosintes AL (Olitsky and Gates 1921) Holdeman and Moore 1970 ->
Dialister pneumosintes Cal 4692-1-74 | ATCC 33048, X82500, Di.psintes | CCUG
21025 | DSM 11619 | VPI 9415
Bacteroides polypragmatus VP Patel and Breuil 1982 GP4 | NRC 2288
Bacteroides praeacutus AL (Tissier 1908) Holdeman and Moore 1970 -> Tissierella
praeacuta ATCC 25539, X80833, Tss.praea2 | NCTC 11158
Bacteroides putredinis AL (Weinberg et al. 1937) Kelly 1957 ATCC 29800, L16497,
Bac.putred
Bacteroides pyogenes VP Benno et al. 1983 P 39-88 | ATCC 35418 | DSM 20611
Bacteroides ruminicola subsp. ruminicola AL Bryant et al. 1958 -> Prevotella rumini-
cola ATCC 19189, L16482, Prv.rumcol
Bacteroides ruminicola subsp. brevis AL Bryant et al. 1958 -> Prevotella ruminicola
subsp. brevis GA33, AJ011682, Prv.brevis | ATCC 19188
Bacteroides salivosus VP Love et al. 1987 -> Porphyromonas salivosa NCTC 11632,
L26103, Ppm.macac2 | VPB 157
Bacteroides splanchnicus AL Werner et al. 1975 1651/6 | ATCC 29572 | DSM 20712 |
NCTC 10825, L16496, Bac.splanc
Bacteroides stercoris VP Johnson et al. 1986 ATCC 43183, X83953, Bac.stercr | VPI
B5-21
Bacteroides succinogenes AL Hungate 1950 -> Fibrobacter succinogenes subsp. suc-
cinogenes S85, M62696, Fib.sucS85 | ATCC 19169
Bacteroides suis VP Benno et al. 1983 P 38024 | ATCC 35419 | DSM 20612
Bacteroides tectus VP Love et al. 1986 160 | NCTC 11853
Bacteroides termitidis AL (Sebald 1962) Holdeman and Moore 1970 -> Sebaldella ter-
mitidis ATCC 33386, M58678, Sbd.termit | NCTC 11300
Bacteroides thetaiotaomicron AL (Distaso 1912) Castellani and Chalmers 1919 E50 |
ATCC 29148, L16489, Bac.theta2 | ATCC 29148, M58763, Bac.thetai | DSM 2079
| NCTC 10582 | VPI 5482
Bacteroides uniformis AL Eggerth and Gagnon 1933 ATCC 8492, L16486, Bac.unifor |
DSM 6597
Bacteroides ureolyticus AL Jackson and Goodman 1978 EDMH-1 | ATCC 33387,
L04321, Bac.ureoly | CCUG 7319 | DSM 20703 | LMG 6451 | NCTC 10941
Bacteroides veroralis VP Watabe et al. 1983 -> Prevotella veroralis ATCC 33779,
L16473, Prv.verora | VPI D22A-7
Bacteroides vulgatus AL Eggerth and Gagnon 1933 ATCC 8482, M58762, Bac.vulgat |
DSM 1447
Bacteroides xylanolyticus VP Scholten-Koerselman et al. 1988 X5-1 | DSM 3808
Bacteroides zoogleoformans VP (Weinberg et al. 1937) Cato et al. 1982 <- Capsularis
zoogleoformans (basonym) -> Prevotella zoogleoformans ATCC 33285, L16488,
Prv.zoofor | VPI D28K-1
Genus II. Aceto?lamentum VP
Aceto?lamentum rigidum VP (T) Dietrich et al. 1989 MN | DSM 20769
Genus III. Acetomicrobium VP
Acetomicrobium ?avidum VP (T) Soutschek et al. 1985 ATCC 43122 | DSM 20664
Acetomicrobium faecale VP Winter et al. 1988 DSM 20678
Genus IV. Acetothermus VP
Acetothermus paucivorans VP (T) Dietrich et al. 1988 TN | DSM 20768
Genus V. Anaerophaga VP
Anaerophaga thermohalophila VP (T) Denger et al. 2002 Fru22, AJ418048 | DSM 12881
| OCM 798
Genus VI. Anaerorhabdus VP

Anaerorhabdus furcosa VP (T) (Veillon and Zuber 1898) Shah and Collins 1986 <- Bac-
teroides furcosus (basonym) T-301-A2 | ATCC 25662 | VPI 3253
308
Genus VII. Megamonas VP

Megamonas hypermegale VP (T) (Harrison and Hansen 1963) Shah and Collins 1983
<- Bacteroides hypermegas (basonym) EBF 61/42 | ATCC 25560 | DSM 1672,
AJ420107 | DSM 20631 | NCTC 10570
Family II. "Rikenellaceae"
Genus I. Rikenella VP
Rikenella microfusus VP (T) (Kaneuchi and Mitsuoka 1978) Collins et al. 1985 <- Bac-
teroides microfusus (basonym) ATCC 29728, L16498, Rik.mifusu | NCTC 11190
Genus II. Alistipes VP
Alistipes ?negoldii VP (T) Rautio et al. 2003 AHN 2437 | CCUG 46020, AJ518874 481 |
CIP 107999
Alistipes putredinis VP (Weinberg et al. 1937) Rautio et al. 2003 <- Bacteroides putre-
dinis (basonym) AATCC 29800, L16497 | CCUG 45780 | CIP 104286,
Genus III. Marinilabilia VP
Marinilabilia salmonicolor VP (T) (Veldkamp 1961) Nakagawa and Yamasato 1996
<- Cytophaga salmonicolor (basonym) = Marinilabilia agarovorans (junior
heterotypic synonym) Cy s1 | ATCC 19041 | DSM 6480 | IAM 14310 | NCIMB
2216, D12672, Ml.salmoni
Marinilabilia agarovorans VP (Reichenbach 1989) Nakagawa and Yamasato 1996 =
Marinilabilia salmonicolor (senior heterotypic synonym) <- Cytophaga agarovo-
rans (basonym) Cy s2 | ATCC 19043, M62422, Ml.agarovo | DSM 2097 | IAM
14297 | NCIMB 2217
Family III. "Porphyromonadaceae"
Genus I. Porphyromonas VP
Porphyromonas asaccharolytica VP (T) (Holdeman and Moore 1970) Shah and Collins
1988 <- Bacteroides asaccharolyticus (basonym) ATCC 25260, L16490,
Ppm.asacch | DSM 20707 | VPI 4198
Porphyromonas cangingivalis VP Collins et al. 1994 NCTC 12856 | VPB 4874, X76259,
Ppm.cangin
Porphyromonas canoris VP Love et al. 1994 NCTC 12835 | VPB 4878
Porphyromonas cansulci VP Collins et al. 1994 NCTC 12858 | VPB 4875, X76260,
Ppm.cansul
Porphyromonas catoniae VP (Moore and Moore 1994) Willems and Collins 1995 <-
Oribaculum catoniae (basonym) ATCC 51270, X82823, Ppm.catoni | VPI N3B-3
Porphyromonas circumdentaria VP Love et al. 1992 NCTC 12469, L26102, Ppm.cirden
| VPB 3329
Porphyromonas crevioricanis VP Hirasawa and Takada 1994 ATCC 55563 | NUM 402
Porphyromonas endodontalis VP (van Steenbergen et al. 1984) Shah and Collins 1988 <-
Bacteroides endodontalis (basonym) HG370 | ATCC 35406, L16491, Ppm.endodo
Porphyromonas gingivalis VP (Coykendall et al. 1980) Shah and Collins 1988 <- Bac-
teroides gingivalis (basonym) 2561 | ATCC 33277, L16492, Ppm.gingiv | DSM
20709, X73964, Ppm.gingi2
Porphyromonas gingivicanis VP Hirasawa and Takada 1994 ATCC 55562 | NUM 301
Porphyromonas gulae VP Fournier et al. 2001 Loup 1 | ATCC 51700, AF208290 | NCTC
13180
Porphyromonas levii VP (Johnson and Holdeman 1983) Shah et al. 1995 <- Bacteroides
levii (basonym) LEV | ATCC 29147, L16493, Ppm.levii | VPI 10450 | VPI 3300
Porphyromonas macacae VP (Slots and Genco 1980) Love 1995 <- Bacteroides macacae
(basonym) = Porphyromonas salivosa (junior heterotypic synonym) 7728-L6C |
ATCC 33141, L16494, Ppm.macaca | DSM 20710
Porphyromonas salivosa VP (Love et al. 1987) Love et al. 1992 = Porphyromonas
macacae (senior heterotypic synonym) <- Bacteroides salivosus (basonym) VPB
157 | NCTC 11632, L26103, Ppm.macac2
Genus II. Dysgonomonas VP
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Dysgonomonas gadei VP (T) Hofstad et al. 2000 CCUG 42882, Y18530 | CIP 106420
Dysgonomonas capnocytophagoides VP Hofstad et al. 2000 , U41355 CCUG 17996 |
LMG 11519
Dysgonomonas mossii VP Lawson et al. 2002 CCUG 43457, AJ319867 | CDC F9489 |
CIP 107079
Genus III. Tannerella VP
Tannerella forsythensis VP (T) (Tanner et al. 1986) Sakamoto et al. 2002 <- Bacteroides
forsythus (basonym) FDC 338 , L16495, Bac.fsyths | ATCC 43037 | JCM 10827
Family IV. "Prevotellaceae"
Genus I. Prevotella VP
Prevotella melaninogenica VP (T) (Oliver and Wherry 1921) Shah and Collins 1990
emend. Wu et al. 1992 <- Bacteroides melaninogenicus subsp. melaninogenicus
(basonym) B282 | ATCC 25845, L16469, Prv.melani | DSM 7089 | JCM 6325 | VPI
2381
Prevotella albensis VP Avgustin et al. 1997 M384, AJ011683, Prv.albens | DSM 11370
Prevotella bivia VP (Holdeman and Johnson 1977) Shah and Collins 1990 <- Bacteroides
bivius (basonym) 653C | ATCC 29303, L16475, Prv.bivia | DSM 20514 | NCTC
11156 | VPI 6822
Prevotella brevis VP (Bryant et al. 1958) Avgustin et al. 1997 <- Prevotella ruminicola
subsp. brevis (basonym) GA33, AJ011682, Prv.brevis | ATCC 19188
Prevotella bryantii VP Avgustin et al. 1997 B14, AJ006457, Prv.bryant | DSM 11371,
AJ006457, Prv.bryant
Prevotella buccae VP (Holdeman et al. 1982) Shah and Collins 1990 <- Bacteroides
buccae (basonym) ATCC 33574, L16477, Prv.buccae | VPI D3A-6
Prevotella buccalis VP (Shah and Collins 1982) Shah and Collins 1990 <- Bacteroides
buccalis (basonym) HS4 | ATCC 35310, L16476, Prv.buccls | DSM 20616 | NCDO
2354
Prevotella corporis VP (Johnson and Holdeman 1983) Shah and Collins 1990 <- Bac-
teroides corporis (basonym) Lambe 532-70A | ATCC 33547, L16465, Prv.corpor
| VPI 9342
Prevotella dentalis VP (Haapasalo et al. 1986) Willems and Collins 1995 <- Mitsuokella
dentalis (basonym) ES 2772 | ES2645 | ATCC 49559 | DSM 3688, X81876,
Prv.denti3
Prevotella denticola VP (Shah and Collins 1982) Shah and Collins 1990 emend. Wu et al.
1992 <- Bacteroides denticola (basonym) 1210 | ATCC 35308, L16467, Prv.dentic
| DSM 20614 | NCDO 2352
Prevotella disiens VP (Holdeman and Johnson 1977) Shah and Collins 1990 <- Bac-
teroides disiens (basonym) 1304-72B | ATCC 29426, L16483, Prv.disien | DSM
20516 | NCTC 11157 | VPI 8057
Prevotella enoeca VP Moore et al. 1994 ATCC 51261, AJ005635, Prv.enoeca | VPI
D194A-25A
Prevotella heparinolytica VP (Okuda et al. 1985) Shah and Collins 1990 <- Bacteroides
heparinolyticus (basonym) HEP | ATCC 35895, L16487, Prv.heplyt
Prevotella intermedia VP (Holdeman and Moore 1970) Shah and Collins 1990 <- Bac-
teroides intermedius (basonym) B422 | ATCC 25611, L16468, Prv.interm | ATCC
25611, X73965, Prv.inter2 | DSM 20706 | VPI 4197
Prevotella loescheii VP (Holdeman and Johnson 1982) Shah and Collins 1990 emend.
Wu et al. 1992 <- Bacteroides loescheii (basonym) 8B | ATCC 15930, L16481,
Prv.loesch | NCTC 11321 | VPI 9085
Prevotella nigrescens VP Shah and Gharbia 1992 Lambe 729-74 | ATCC 33563, L16471,
Prv.nigres | NCTC 9336, X73963, Prv.nigre3 | VPI 8944
Prevotella oralis VP (Loesche et al. 1964) Shah and Collins 1990 <- Bacteroides oralis
(basonym) ATCC 33269, L16480, Prv.oralis | DSM 20702 | NCTC 11459 | VPI
D27B-24
310
Prevotella oris VP (Holdeman et al. 1982) Shah and Collins 1990 <- Bacteroides oris
(basonym) ATCC 33573, L16474, Prv.oris | VPI DIA-1A
Prevotella oulorum VP (Shah et al. 1985) Shah and Collins 1990 <- Bacteroides oulorum
(basonym) ATCC 43324, L16472, Prv.oulora | NCTC 11871 | WPH 179
Prevotella pallens VP Knnen et al. 1998 AHN 10371, Y13105, Prv.pallen | NCTC
13042
Prevotella ruminicola subsp. ruminicola VP (Bryant et al. 1958) Shah and Collins 1990
emend. Avgustin et al. 1997 <- Bacteroides ruminicola subsp. ruminicola (ba-
sonym) ATCC 19189, L16482, Prv.rumcol
Prevotella ruminicola subsp. brevis VP (Bryant et al. 1958) Shah and Collins 1990
<- Bacteroides ruminicola subsp. brevis (basonym) -> Prevotella brevis ATCC
19188
Prevotella tannerae VP Moore et al. 1994 ATCC 51259, AJ005634, Prv.tanner | VPI
N14B-15
Prevotella veroralis VP (Watabe et al. 1983) Shah and Collins 1990 emend. Wu et al.
1992 <- Bacteroides veroralis (basonym) ATCC 33779, L16473, Prv.verora | VPI
D22A-7
Prevotella zoogleoformans VP (Weinberg et al. 1937) Shah and Collins 1990 emend.
Moore et al. 1994 <- Bacteroides zoogleoformans (basonym) ATCC 33285,
L16488, Prv.zoofor | VPI D28K-1
Class II. Flavobacteria VP
Order I. "Flavobacteriales"
Family I. Flavobacteriaceae VP
Genus I. Flavobacterium AL (T)
Flavobacterium aquatile AL (T) (Frankland and Frankland 1889) Bergey et al. 1923
emend. Bernardet et al. 1996 F 36 | ATCC 11947, M62797, F.aquatile | CIP
55.141 | DSM 1132 | DSM 30095 | NCIB 8694
Flavobacterium acidi?cum AL Steinhaus 1941 NCIB 9891
Flavobacterium acidurans AL Millar 1973 ATCC 27383
Flavobacterium balustinum AL Harrison 1929 -> Chryseobacterium balustinum LA
724 | ATCC 33487, M58771, Csb.balust | NBRC 15053, D14016, Csb.balus2 |
NCTC 11212
Flavobacterium branchiophilum VP Wakabayashi et al. 1989 emend. Bernardet et al.
1996 BGD-7721 | ATCC 35035 | CIP 103527 | NBRC 15030, D14017
Flavobacterium breve VP Holmes and Owen 1982 -> Empedobacter brevis CL88/76 |
ATCC 43319 | NCTC 11099
Flavobacterium capsulatum AL Leifson 1962 -> Sphingomonas capsulata ATCC
14666 | DSM 30196 | GIFU 11526, D16147, Spg.capsu2 | IAM 14271 | NBRC
12533 | JCM 7508 | LMG 2830 | NCIB 9890
Flavobacterium columnare VP (Bernardet and Grimont 1989) Bernardet et al. 1996 <-
Flexibacter columnaris (basonym) ATCC 23463 | LMG 13035 | NCIMB 2248,
D12659, F.columnar
Flavobacterium devorans AL (Zimmermann 1890) Bergey et al. 1923 ATCC 10829 |
CCM 72 | DSM 30198 | NCIB 8195 | NRRL B 54
Flavobacterium degerlachei VP Van Trappen et al. 2004 DSM 15718 | LMG 21915,
AJ557886
Flavobacterium esteraromaticum AL (Omelianski 1923) Bergey et al. 1930 -> Au-
reobacterium esteraromaticum ATCC 8091, Y17231 | CCM 4371 | DSM 8609 |
NBRC 3751
Flavobacterium ferrugineum AL Sickles and Shaw 1934 3576 | ATCC 13524, M62798,
F.ferrugin | DSM 30193
Flavobacterium ?evense VP (van der Meulen et al. 1974) Bernardet et al. 1996 <- Cy-
tophaga ?evensis (basonym) A-34 | ATCC 27944, M58767, F.?evense | DSM 1076
| IAM 14303 | LMG 8328
311
Flavobacterium frigidarium VP Humphry et al. 2001 A2i, AF162266 | ATCC 700810 |

NCIMB 13737
Flavobacterium frigoris VP Van Trappen et al. 2004 DSM 15719 | LMG 21922,
AJ557887
Flavobacterium gillisiae VP McCammon and Bowman 2000 ACAM 601, U85889
Flavobacterium gleum VP Holmes et al. 1984 -> Chryseobacterium gleum F93 | ATCC
35910, M58772, Csb.gleum | NBRC 15054 | JCM 2410 | NCTC 11432
Flavobacterium gondwanense VP Dobson et al. 1993 -> Psychro?exus gondwanensis
ACAM 44, M92278, Psf.gondwn | ATCC 51278 | DSM 5423, M92278, Psf.gondwn
Flavobacterium halmophilum AL Elazari-Volcani 1940 -> Halomonas halmophila
ATCC 19717, M59153 | DSM 5349 | IAM 14439 | NCMB 1971
Flavobacterium heparinum AL Payza and Korn 1956 -> Cytophaga heparina HIM
762-3 | ATCC 13125 | DSM 2366 | NBRC 12017 | LMG 10339 | NCIB 9290
Flavobacterium hibernum VP McCammon et al. 1998 ACAM 376 | ATCC 51468,
L39067, F.hibernum
Flavobacterium hydatis VP (Strohl and Tait 1978) Bernardet et al. 1996 <- Cytophaga
aquatilis (basonym) Cy aq1 | ATCC 29551, M58764, F.hydatis | DSM 2063 | LMG
3835
Flavobacterium indologenes VP Yabuuchi et al. 1983 -> Chryseobacterium indolo-
genes RH542 | ATCC 29897, M58773, Csb.indlog | CDC 3716 | GIFU 1347 | NCTC
10796
Flavobacterium indoltheticum VP Campbell and Williams 1951 -> Chryseobacterium
indoltheticum ATCC 27950, M58774, Csb.indthe
Flavobacterium johnsoniae VP (Stanier 1947) Bernardet et al. 1996 <- Cytophaga john-
sonae (basonym) Cy j3 | MYX 1.1.1 | ATCC 17061, M59051, F.johnsoni | DSM
2064, M59051, F.johnsoni | IAM 14304 | NBRC 14942, D12664, F.johnson3 | LMG
1341 | NCIB 11054
Flavobacterium limicola VP Tamaki et al. 2003 ST-82, AB075230 | DSM 15094 | JCM
11473
Flavobacterium marinotypicum AL ZoBell and Upham 1944 -> Microbacterium mari-
typicum ATCC 19260 | DSM 12512 | NBRC 15779 | NCMB 1050
Flavobacterium meningosepticum AL King 1959 -> Chryseobacterium meningosep-
ticum 14 | ATCC 13253, M58776, Csb.mening | DSM 2800 | NCTC 10016
Flavobacterium micromati VP Van Trappen et al. 2004 CIP 108161 | LMG 21919,
AJ557888
Flavobacterium mizutaii VP (Yabuuchi et al. 1983) Holmes et al. 1988 <- Sphingob-
acterium mizutaii (basonym) ATCC 33299, M58796, F.mizutaii | GIFU 1203 |
KC1794
Flavobacterium multivorum VP Holmes et al. 1981 -> Sphingobacterium multivorum
B 5533 | LRA 260776 | ATCC 33613 | DSM 6175 | GIFU 2812 | NBRC 14947,
D14025 | NCTC 11343

Flavobacterium oceanosedimentum AL Carty and Litch?eld 1978 ATCC 31317
Flavobacterium odoratum AL Stutzer 1929 -> Myroides odoratus ATCC 4651,
M58777, My.odoratu | DSM 2801 | IAM 14199 | JCM 7458, D14019, My.odorat2 |
LMG 1233 | NCTC 11036
Flavobacterium okeanokoites AL ZoBell and Upham 1944 -> Planococcus
okeanokoites CCM 320 | NBRC 12536, D55729, Plc.okeano | NCIMB 561
Flavobacterium omnivorum VP Zhu et al. 2003 ZF-8 | AS 1.2747 | JCM 11313,
AF433174
Flavobacterium pectinovorum VP (Reichenbach 1989) Bernardet et al. 1996 <- Cy-
tophaga pectinovora (basonym) 81 | Cy p1 | ATCC 19366 | DSM 6368 | IAM 14307
| LMG 4031 | NCIMB 9059, D12669, F.pectinov
Flavobacterium psychrophilum VP (Bernardet and Grimont 1989) Bernardet et al. 1996

<- Flexibacter psychrophilus (basonym) 3068 | DSM 3660 | IAM 14308 | LMG
13179 | NCIMB 1947, D12670, F.psychro3
312
Flavobacterium resinovorum AL Delaporte and Daste 1956 ATCC 33545 | DSM 7478 |
NCIB 8767
Flavobacterium saccharophilum VP (Reichenbach 1989) Bernardet et al. 1996 <-
Cytophaga saccharophila (basonym) 24 | DSM 1811 | IAM 14309 | LMG 8384 |
NCIMB 2072, D12671, F.sacchar2
Flavobacterium salegens VP Dobson et al. 1993 -> Salegentibacter salegens ACAM
48, M92279, F.salegens | ATCC 51522 | DSM 5424, M92279, F.salegens
Flavobacterium scophthalmum VP Mudarris et al. 1994 -> Chryseobacterium scoph-
thalmum MM1 | CCM 4109 | LMG 13028
Flavobacterium spiritivorum VP Holmes et al. 1982 -> Sphingobacterium spiritivorum
KM 2138 | ATCC 33861, M58778, Sph.sprvo2 | CDC E7288 | DSM 2582 | GIFU
2138 | IAM 14210 | JCM 1277, D14026, Sph.sprvor | NCTC 11386

Flavobacterium succinicans VP (Reichenbach 1989) Bernardet et al. 1996 <- Cytophaga
succinicans (basonym) Cy su3 | DSM 4002 | IAM 14311 | NBRC 14905, D12673,
F.succini2 | LMG 10402 | NCIMB 2277
Flavobacterium tegetincola VP McCammon and Bowman 2000 ACAM 602, U85887
Flavobacterium thalpophilum VP Holmes et al. 1983 -> Sphingobacterium
thalpophilum CL413/81 | K-1173 | ATCC 43320, M58779, Sph.thalpo | NBRC
14963, D14020, Sph.thalp3 | NCTC 11429
Flavobacterium thermophilum VP Loginova and Egorova 1982 VKM 1325
Flavobacterium uliginosum AL ZoBell and Upham 1944 -> Cytophaga uliginosa 553 |
ATCC 14397, M62799, Cy.uligino | DSM 2061 | IAM 14312 | NBRC 14962 | NCMB
1863, D12674, Cy.uligin2
Flavobacterium xanthum VP McCammon and Bowman 2000 ACAM 81, AF030380
Flavobacterium xinjiangense VP Zhu et al. 2003 ZF-6 | AS 1.2749 | JCM 11314,
AF433173
Flavobacterium yabuuchiae VP Holmes et al. 1988 = Sphingobacterium spiritivorum
(senior heterotypic synonym) D7529 | F8081 | NBRC 14975, D14021 | NCTC
12113
Genus II. Aequorivita VP
Aequorivita antarctica VP (T) Bowman and Nichols 2002 SW49, AY027802 | ACAM 640
| DSM 14231
Aequorivita crocea VP Bowman and Nichols 2002 Y12-2, AY027806 | ACAM 642 |
DSM 14293
Aequorivita lipolytica VP Bowman and Nichols 2002 Y10-2, AY027805 | ACAM 641 |
DSM 14236
Aequorivita sublithincola VP Bowman and Nichols 2002 9-3, AF170749 | ACAM 643 |
DSM 14238
Genus III. Arenibacter VP 482
Arenibacter latericius VP (T) Ivanova et al. 2001 CIP 106861 | KMM 426, AF052742 483 |
LMG 19694 | VKM B 2137D
Genus IV. Bergeyella VP
Bergeyella zoohelcum VP (T) (Holmes et al. 1987) Vandamme et al. 1994 <- Weeksella
zoohelcum (basonym) CL 544/80 | D658 | ATCC 43767, M93153, Brg.zoohel | CDC
D658 | NCTC 11660
Genus V. Capnocytophaga VP
Capnocytophaga ochracea VP (T) (Prevot et al. 1956) Leadbetter et al. 1982 <- Bac-
teroides ochraceus (basonym) ATCC 27872, U41350, Cap.ochra3 | DSM 7271 |
VPI 2845
Capnocytophaga canimorsus VP Brenner et al. 1990 7120 | ATCC 35979, L14637,
Cap.canimo | ATCC 35979, X97246, Cap.canim2
Capnocytophaga cynodegmi VP Brenner et al. 1990 E6447 | ATCC 49044, L14638,
Cap.cynode | ATCC 49044, X97245, Cap.cynod2
48 2
Place men t o f A re nib acter within t he Flavoba cte riaceae is ques tionab le
48 3
Ge nBa nk acce ssio n nu mbe r for strain K MM 426 (AF05 2740 ) re ported in co rrec tly in IJS EM .
313
Capnocytophaga gingivalis VP Leadbetter et al. 1982 emend. London et al. 1985 27

| 927-3 | ATCC 33624, L14639, Cap.gingi2 | ATCC 33624, X67608, Cap.gingiv |
DSM 3290
Capnocytophaga granulosa VP Yamamoto et al. 1994 B0611 | ATCC 51502, X97248,
Cap.granu3 | DSM 11449 | JCM 8566
Capnocytophaga haemolytica VP Yamamoto et al. 1994 A0404 | ATCC 51501, X97247,
Cap.haemo2 | DSM 11385 | JCM 8565 | LMG 16021, U41349, Cap.haemol
Capnocytophaga sputigena VP Leadbetter et al. 1982 4 | ATCC 33612, L14636,
Cap.sputi3 | ATCC 33612, X67609, Cap.sputi2 | DSM 3292
Genus VI. Cellulophaga VP 484
Cellulophaga lytica VP (T) (Lewin 1969) Johansen et al. 1999 <- Cytophaga lytica (ba-
sonym) ATCC 23178, D12666, M62796, M28058
Cellulophaga algicola VP Bowman 2000 IC166, AF001366
Cellulophaga baltica VP Johansen et al. 1999 NN015840, AJ005972 | LMG 18535
Cellulophaga fucicola VP Johansen et al. 1999 NN015860, AJ005973 | LMG 18536
Cellulophaga paci?ca VP Nedashkovskaya et al. 2004 KMM 3664, AB100840 | JCM
11735 | LMG 21938
Genus VII. Chryseobacterium VP
Chryseobacterium gleum VP (T) (Holmes et al. 1984) Vandamme et al. 1994 <- Flavobac-
terium gleum (basonym) F93 | ATCC 35910, M58772, Csb.gleum | NBRC 15054 |
JCM 2410 | NCTC 11432
Chryseobacterium balustinum VP (Harrison 1929) Vandamme et al. 1994 <- Flavobac-
terium balustinum (basonym) LA 724 | ATCC 33487, M58771, Csb.balust | NBRC
15053, D14016, Csb.balus2 | NCTC 11212
Chryseobacterium de?uvii VP Kmpfer et al. 2003 B2, AJ309324 | CIP 107207 | DSM
14219
Chryseobacterium indologenes VP (Yabuuchi et al. 1983) Vandamme et al. 1994 <-
Flavobacterium indologenes (basonym) RH542 | ATCC 29897, M58773, Csb.ind-
log | CDC 3716 | GIFU 1347 | NCTC 10796
Chryseobacterium indoltheticum VP (Campbell and Williams 1951) Vandamme et
al. 1994 <- Flavobacterium indoltheticum (basonym) ATCC 27950, M58774,
Csb.indthe
Chryseobacterium joostei VP Hugo et al. 2003 CCUG 46665 | Ix 5a | LMG 18212,
AJ271010
Chryseobacterium meningosepticum VP (King 1959) Vandamme et al. 1994 <-
Flavobacterium meningosepticum (basonym) 14 | ATCC 13253, M58776,
Csb.mening | DSM 2800 | NCTC 10016
Chryseobacterium miricola VP Li et al. 2004 W3-B1, AB071953 | DSM 14571 | JCM
11413
Chryseobacterium scophthalmum VP (Mudarris et al. 1994) Vandamme et al. 1994
<- Flavobacterium scophthalmum (basonym) MM1 | CCM 4109 | LMG 13028,
AJ271009
Genus VIII. Coenonia VP
Coenonia anatina VP (T) Vandamme et al. 1999 1502-91 | LMG 14382, Y17612,
Cno.anatin
Genus IX. Croceibacter VP
Croceibacter atlanticus VP (T) Cho and Giovannoni 2003 HTCC2559 | ATCC BAA-628,
AY163576 | KCTC 12090
Genus X. Empedobacter VP
Empedobacter brevis VP (T) (Holmes and Owen 1982) Vandamme et al. 1994 <-
Flavobacterium breve (basonym) CL88/76 | ATCC 43319 | NCTC 11099
Genus XI. Gelidibacter VP
Gelidibacter algens VP (T) Bowman et al. 1997 ACAM 536, U62914 | ATCC 700364 |
DSM 12408
48 4
Place men t of Cellu lop hag a is based on the recomm enda tio n o f L udwig.
314
Gelidibacter mesophilus VP Macian et al. 2002 2SM29, AJ344133 | CECT 5103 | DSM
14095
Genus XII. Gillisia VP
Gillisia limnaea VP (T) Van Trappen et al. 2004 LMG 21470, AJ440991
Genus XIII. Mesonia VP
Mesonia algae VP (T) Nedashkovskaya et al. 2003 CCUG 47092 | KCTC 12089 | KMM
3909, AF536383
Genus XIV. Muricauda VP
Muricauda ruestringensis VP (T) Bruns et al. 2001 B1, AF218782 | DSM 13258 | LMG
19739
485
Genus XV. Myroides VP 486

Myroides odoratus VP (T) (Stutzer 1929) Vancanneyt et al. 1996 <- Flavobacterium odor-
atum (basonym) ATCC 4651, M58777, My.odoratu | DSM 2801 | IAM 14199 | JCM
7458, D14019, My.odorat2 | LMG 1233 | NCTC 11036
Myroides odoratimimus VP Vancanneyt et al. 1996 LMG 4029 | NCTC 11180
Genus XVI. Ornithobacterium VP
Ornithobacterium rhinotracheale VP (T) Vandamme et al. 1994 CCUG 23171 | LMG
9086, L19156, Orn.rhinot | MCCM 01774
Genus XVII. Polaribacter VP
Polaribacter ?lamentus VP (T) Gosink et al. 1998 215, U73726 | ATCC 70039
Polaribacter franzmannii VP Gosink et al. 1998 301, U14586 | ATCC 700399
Polaribacter glomeratus VP (McGuire et al. 1988) Gosink et al. 1998 <- Flectobacil-
lus glomeratus (basonym) ACAM 171T | ACM 3055 | ATCC 43844, M58775,
Plr.glomer | UQM 3055
Polaribacter irgensii VP Gosink et al. 1998 23-P | ATCC 700398
Genus XVIII. Psychro?exus VP
Psychro?exus torquis VP (T) Bowman et al. 1999 651 | ACAM 623, U85881, Psf.torqui
Psychro?exus gondwanensis VP (Dobson et al. 1993) Bowman et al. 1999 <- Flavobac-
terium gondwanense (basonym) ACAM 44, M92278, Psf.gondwn | ATCC 51278
| DSM 5423, M92278, Psf.gondwn
Genus XIX. Psychroserpens VP

Psychroserpens burtonensis VP (T) Bowman et al. 1997 ACAM 188, U62913, Psh.bur-
ton | DSM 12212
Genus XX. Riemerella VP
Riemerella anatipestifer VP (T) (Henrickson and Hilbert 1932) Segers et al. 1993 <-
Moraxella anatipestifer (basonym) ATCC 11845, U10877, Rie.anati2 | ATCC
11845, U60101, Rie.anati3 | LMG 11054 | MCCM 00568
Riemerella columbina VP Vancanneyt et al. 1999 Hinz x183-89 | LMG 11607,
AF181448
Genus XXI. Saligentibacter VP
Salegentibacter salegens VP (T) (Dobson et al. 1993) McCammon and Bowman 2000
<- Flavobacterium salegens (basonym) ACAM 48, M92279 | ATCC 51522 | DSM
5424
Genus XXII. Tenacibaculum VP
Tenacibaculum maritimum VP (T) (Wakabayashi et al. 1986) Suzuki et al. 2001 487 <-
Flexibacter maritimus (basonym) R2 | ATCC 43398, M64629, Flx.marit2 | NCIMB
2154 488 , Flx.marit3
Tenacibaculum amylolyticum VP Suzuki et al. 2001 DSM 13766 | NBRC 16310 | MBIC
4355, AB032505
48 5
Place men t o f M uricauda within t he Flavoba cte riaceae is ques tionab le
48 6
J. F. B ernardet ha s comm unica ted that M yroides was m is plac ed in a fa mily s epa ra te from the Flav obac teriac eae. R ece ntly the g enus was
inco rp orated in to t he e men ded description o f th e fam ily Flav ob act erace ae (IJ S EM 52: 10 491 070).
48 7
48 8
NCIMB a ccession num ber is tran sp ose d in the G enB ank rec ord.
315
Tenacibaculum mesophilum VP Suzuki et al. 2001 DSM 13764 | NBRC 16307 | MBIC
1140, AB032501
Tenacibaculum ovolyticum VP (Hansen et al. 1992) Suzuki et al. 2001 489 <- Flexibacter
ovolyticus (basonym) EKD002 | IAM 14318, AB032506 | NCIMB 13127
Tenacibaculum skagerrakense VP Frette et al. 2004 D30, AF469612 | ATCC BAA-458 |
DSM 14836
Genus XXIII. Weeksella VP
Weeksella virosa VP (T) Holmes et al. 1987 ATCC 43766, M93152, Wee.virosa | CDC
9751 | NCTC 11634
Weeksella zoohelcum VP Holmes et al. 1987 -> Bergeyella zoohelcum CL 544/80 |
D658 | ATCC 43767, M93153, Brg.zoohel | CDC D658 | NCTC 11660
Genus XXIV. Zobellia VP
Zobellia galactanivorans VP (T) Barbeyron et al. 2001 Dsij, AF208293 | CIP 106680 |
DSM 12802
Zobellia uliginosa VP (ZoBell and Upham 1944) Barbeyron et al. 2001 490 <- Cytophaga
uliginosa (basonym) 553 | ZoBell 553 | ATCC 14397, M62799 | ATCC 14397,
M28238 | DSM 2061 | IAM 14312 | NBRC 14962 | NCMB 1863, D12674
Family II. "Blattabacteriaceae"
Genus I. Blattabacterium AL
Blattabacterium cuenoti AL (T) (Mercier 1906) Hollande and Favre 1931
Class III. Sphingobacteria"
"
Order I. "Sphingobacteriales"
Family I. Sphingobacteriaceae VP
Genus I. Sphingobacterium VP (T)
Sphingobacterium spiritivorum VP (T) (Holmes et al. 1982) Yabuuchi et al. 1983 <-
Flavobacterium spiritivorum (basonym) = Flavobacterium yabuuchiae (junior
heterotypic synonym) ATCC 33861, M58778, Sph.sprvo2 | CDC E7288 | GIFU
3101 | IAM 14210 | JCM 1277, D14026, Sph.sprvor | NCTC 11386
Sphingobacterium antarcticum VP Shivaji et al. 1992 4BY | MTCC 675
Sphingobacterium faecium VP Takeuchi and Yokota 1993 KS 0470 | DSM 11690,
AJ438176 | NBRC 15299
Sphingobacterium heparinum VP (Payza and Korn 1956) Takeuchi and Yokota 1993
<- Cytophaga heparina (basonym) -> Pedobacter heparinus HIM 762-3 | ATCC
13125 | DSM 2366 | NBRC 12017 | LMG 10339 | NCIB 9290
Sphingobacterium mizutaii VP Yabuuchi et al. 1983 -> Flavobacterium mizutaii ATCC
33299, M58796, F.mizutaii | GIFU 1203 | KC1794
Sphingobacterium multivorum VP (Holmes et al. 1981) Yabuuchi et al. 1983 <-
Flavobacterium multivorum (basonym) B 5533 | LRA 260776 | ATCC 33613 |
DSM 6175 | GIFU 2812 | NBRC 14947, D14025 | NCTC 11343
Sphingobacterium piscium VP Takeuchi and Yokota 1993 -> Pedobacter piscium DSM
11725 | NBRC 14985 | JCM 7454
Sphingobacterium thalpophilum VP (Holmes et al. 1983) Takeuchi and Yokota 1993
<- Flavobacterium thalpophilum (basonym) CL413/81 | K-1173 | ATCC 43320,
M58779, Sph.thalpo | NBRC 14963, D14020, Sph.thalp3 | NCTC 11429
Genus II. Pedobacter VP
Pedobacter heparinus VP (T) (Payza and Korn 1956) Steyn et al. 1998 <- Sphingobac-
terium heparinum (basonym) HIM 762-3 | ATCC 13125 | DSM 2366, AJ438172 |
NBRC 12017 | LMG 10339 | NCIB 9290
Pedobacter africanus VP Steyn et al. 1998 DSM 12126, AJ438171 | LMG 10353
48 9
49 0
316
Pedobacter piscium VP (Takeuchi and Yokota 1993) Steyn et al. 1998 <- Sphingob-
acterium piscium (basonym) DSM 11725, AJ438174 | NBRC 14985 | JCM 7454 |
LMG 14023
Pedobacter saltans VP Steyn et al. 1998 DSM 12145, AJ438173 | LMG 10337
Family II. "Saprospiraceae"
Genus I. Saprospira AL
Saprospira grandis AL (T) Gross 1911 WH | ATCC 19586 | ATCC 23119, M58795,
Sap.grandi
Genus II. Haliscomenobacter AL
Haliscomenobacter hydrossis AL (T) van Veen et al. 1973 O | ATCC 27775, M58790,
Hal.hydros | DSM 1100
Genus III. Lewinella VP
Lewinella cohaerens VP (T) (Lewin 1970) Sly et al. 1998 <- Herpetosiphon cohaerens
(basonym) II-2 | ATCC 23123, AF039292, Lew.cohaer
Lewinella nigricans VP (Lewin 1970) Sly et al. 1998 <- Herpetosiphon nigricans (ba-
sonym) SS-2 | ATCC 23147, AF039294, Lew.nigric
Lewinella persica VP (Lewin 1970) Sly et al. 1998 <- Herpetosiphon persicus (basonym)
T-3 | ATCC 23167, AF039295, Lew.persic
Family III. "Flexibacteraceae"

Genus I. Flexibacter AL
Flexibacter ?exilis AL (T) Soriano 1945 CR-63 | Fx f1 | ATCC 23079, M62794, Flx.?exil
| DSM 6793
Flexibacter aggregans AL (Lewin 1969) Leadbetter 1974 ATCC 23162, M64628,

Flx.aggre1
Flexibacter aurantiacus AL Lewin 1969 Fx a2 | ATCC 23107, M62792, Flx.aurant | DSM
6792 | NBRC 15970
Flexibacter canadensis VP Christensen 1980 ATCC 29591, M62793, Flx.canada | DSM
3403 | UASM 9D
Flexibacter columnaris VP (ex Leadbetter) Bernardet and Grimont 1989 = Cytophaga
columnaris (homotypic synonym) -> Flavobacterium columnare ATCC 23463 |
NCMB 2248, D12659, F.columnar
Flexibacter elegans VP Reichenbach 1989 Fx a2 | NZ-1, M58783, Flx.ele.NZ | ATCC
23112, M58783, Flx.ele.NZ | DSM 3317 | IAM 14319 | NBRC 15055
Flexibacter ?liformis VP Reichenbach 1989 Fx e1, M58782, Flx.?lfor | ATCC 29495,
M58782, Flx.?lfor | DSM 527 | IAM 14320 | NBRC 15056
Flexibacter japonensis VP Fujita et al. 1997 758 | NBRC 16041, AB078055 | JCM 9735
Flexibacter litoralis AL Lewin 1969 Fx l1 | SIO-4 | ATCC 23117, M58784, Flx.litora |
DSM 6794 | NBRC 15988
Flexibacter maritimus VP Wakabayashi et al. 1986 = Cytophaga marina (junior het-
erotypic synonym) -> Tenacibaculum maritimum R2 | ATCC 43398, M64629,
Flx.marit2 | NCMB 2154, D14023, Flx.marit3
Flexibacter ovolyticus VP Hansen et al. 1992 -> Tenacibaculum ovolyticum EKD002
| NCIMB 13127
Flexibacter polymorphus AL Lewin 1974 ATCC 27820, M58786, Flx.polymo | DSM

9678
Flexibacter psychrophilus VP (ex Borg 1960) Bernardet and Grimont 1989 = Cy-
tophaga psychrophila (homotypic synonym) -> Flavobacterium psychrophilum
3068 | DSM 3660 | IAM 14308 | LMG 13179 | NCIMB 1947, D12670, F.psychro3
Flexibacter roseolus AL Lewin 1969 R-155 | ATCC 23088, M58787, Flx.roseol | DSM
9546
Flexibacter ruber AL Lewin 1969 GEY | ATCC 23103, M58788, Flx.ruber | DSM 9560
Flexibacter sancti AL Lewin 1969 BA-3 | ATCC 23092, M62795, Flx.sancti | DSM 784 |
NBRC 15057
Flexibacter tractuosus AL (Lewin 1969) Leadbetter 1974 H-43 | ATCC 23168, M58789,
Flx.tractu | DSM 4126 | NBRC 15989 | NCMB 1408
317
Genus II. Belliella VP

Belliella baltica VP (T) Brettar et al. 2004 BA134, AJ564643 | CIP 108006 | DSM 15883
| LMG 21964
Genus III. Cyclobacterium VP

Cyclobacterium marinum VP (T) (Raj 1976) Raj and Maloy 1990 <- Flectobacillus mar-
inus (basonym) Raj | ATCC 25205 | ATCC 43824, M62788 | DSM 745, AY533665
Genus IV. Cytophaga AL
Cytophaga hutchinsonii AL (T) Winogradsky 1929 D465 | ATCC 33406, M58768,
Cy.hutchin | DSM 1761, D12663, Cy.hutchi2 | NBRC 15051 | IMET 11357 | NCIB
9469
Cytophaga agarovorans VP Reichenbach 1989 -> Marinilabilia agarovorans Cy s2 |
ATCC 19043, M62422, Ml.agarovo | DSM 2097 | IAM 14297 | NCIMB 2217
Cytophaga aprica VP Reichenbach 1989 -> Flammeovirga aprica JL-4 Lewin | ATCC
23126, D12655, Flv.aprica
Cytophaga aquatilis AL Strohl and Tait 1978 -> Flavobacterium hydatis Cy aq1 | ATCC
29551, M58764, F.hydatis | DSM 2063
Cytophaga arvensicola VP Oyaizu et al. 1983 M64 | DSM 3695 | IAM 12650, D12657,
Cy.arvensi | JCM 2836 | NCIB 11855
Cytophaga aurantiaca VP Reichenbach 1989 ATCC 12208 | DSM 3654 | IAM 14300 |
NCIB 8628, D12658, Cy.aurant2
Cytophaga columnaris VP Reichenbach 1989 = Flexibacter columnaris (homotypic syn-
onym) 1-S-2cl | ATCC 23463 | NCMB 2248, D12659, F.columnar
Cytophaga dif?uens VP Reichenbach 1989 -> Persicobacter dif?uens B-1 | DSM 3658
| IAM 14117 | NCMB 1402, D12660, Prb.dif?2
Cytophaga fermentans AL Bachmann 1955 ATCC 19072, M58766, Cy.ferment | DSM

9555 | IAM 14302 | NCIMB 2218, D12661, Cy.fermen2
Cytophaga ?evensis AL van der Meulen et al. 1974 -> Flavobacterium ?evense A-34 |
ATCC 27944, M58767, F.? evense | DSM 1076 | IAM 14303 | LMG 8328
Cytophaga heparina VP (Payza and Korn 1956) Christensen 1980 <- Flavobacterium
heparinum (basonym) -> Sphingobacterium heparinum HIM 762-3 | ATCC 13125
| DSM 2366 | NBRC 12017 | LMG 10339 | NCIB 9290
Cytophaga johnsonae AL Stanier 1947 -> Flavobacterium johnsoniae Cy j3 | MYX

1.1.1 | ATCC 17061, M59051, F.johnsoni | DSM 2064, M59051, F.johnsoni | IAM
14304 | NBRC 14942, D12664, F.johnson3 | LMG 1341 | NCIB 11054
Cytophaga latercula AL Lewin 1969 SIO-1 | ATCC 23177, D12665, Cy.laterc2 | ATCC
23177, M58769, Cy.latercu | DSM 2041 | IAM 14305
Cytophaga lytica AL Lewin 1969 -> Cellulophaga lytica Cy l2 | ATCC 23178, D12666,
Cy.lytica2 | ATCC 23178, M62796, Cy.lytica | DSM 2039 | NBRC 15985
Cytophaga marina VP Reichenbach 1989 = Flexibacter maritimus (senior heterotypic
synonym) R-2 | NCMB 2153
Cytophaga marino?ava VP Reichenbach 1989 ATCC 19326, M58770, Cy.marinof |
DSM 3653 | IAM 14116 | NCMB 397, D12668, Cy.marino2
Cytophaga pectinovora VP Reichenbach 1989 -> Flavobacterium pectinovorum 81 |
Cy p1 | ATCC 19366 | DSM 6368 | IAM 14307 | LMG 4031 | NCIMB 9059, D12669,
F.pectinov
Cytophaga psychrophila VP (ex Borg 1960) Reichenbach 1989 = Flexibacter psy-
chrophilus (homotypic synonym) 3068 | DSM 3660 | IAM 14308 | LMG 13179 |
NCIMB 1947, D12670, F.psychro3
Cytophaga saccharophila VP Reichenbach 1989 -> Flavobacterium saccharophilum
24 | DSM 1811 | IAM 14309 | LMG 8384 | NCIMB 2072, D12671, F.sacchar2
Cytophaga salmonicolor AL Veldkamp 1961 -> Marinilabilia salmonicolor Cy s1 |
ATCC 19041 | DSM 6480 | IAM 14310 | NCIMB 2216, D12672, Ml.salmoni
Cytophaga succinicans VP Reichenbach 1989 -> Flavobacterium succinicans Cy su3 |
DSM 4002 | IAM 14311 | NBRC 14905, D12673, F.succini2 | LMG 10402 | NCIMB
2277
318
Cytophaga uliginosa VP (ZoBell and Upham 1944) Reichenbach 1989 <- Flavobac-
terium uliginosum (basonym) -> Zobellia uliginosa 553 | ATCC 14397, M62799
| ATCC 14397, M28238 | DSM 2061 | IAM 14312 | NBRC 14962 | NCMB 1863,
D12674
Cytophaga xylanolytica VP Haack and Breznak 1993 XM3 | ATCC 51429 | DSM 6779
Genus V. Dyadobacter VP
Dyadobacter fermentans VP (T) Chelius and Triplett 2000 NS114, AF137029 | ATCC
700827
Genus VI. Flectobacillus AL
Flectobacillus major AL (T) (Gromov 1963) Larkin et al. 1977 ATCC 29496, M62787,
Flc.major | DSM 103 | VKM B-859
Flectobacillus glomeratus VP McGuire et al. 1988 -> Polaribacter glomeratus ACAM
171 | ACM 3055 | ATCC 43844, M58775, Plr.glomer | UQM 3055
Flectobacillus marinus AL (Raj 1976) Borrall and Larkin 1978 -> Cyclobacterium mar-
inum ATCC 25205 | ATCC 43824, M62788 | DSM 745, AY533665
Genus VII. Hongiella VP
Hongiella mannitolivorans VP (T) Yi and Chun 2004 DSM 15301 | IMSNU 14012 |
JC2050, AY264838 | KCTC 12050
Hongiella halophila VP Yi and Chun 2004 DSM 15292, | IMSNU 14013 | JC2051,
AY264839 | KCTC 12051
Hongiella ornithinivorans VP Yi and Chun 2004 DSM 15282 | IMSNU 14014 | JC2052,
AY264840 | KCTC 12052
Genus VIII. Hymenobacter VP 491
Hymenobacter roseosalivarius VP (T) Hirsch et al. 1999 AA-718, Y18833 | DSM 11622
Hymenobacter aerophilus VP Buczolits et al. 2002 I/26-Cor1, AJ276901 | DSM 13606 |
LMG 19657
Hymenobacter actinosclerus VP Collins et al. 2000 CCUG 39621, Y17356
Genus IX. Meniscus AL
Meniscus glaucopis AL (T) Irgens 1977 ATCC 29398
Genus X. Microscilla AL
Microscilla marina AL (T) (Pringsheim 1951) Lewin 1969 SIO-8 | ATCC 23134, M58793,
Msc.marina | DSM 4236 | NCMB 1400
Genus XI. Reichenbachia VP
Reichenbachia agariperforans VP (T) Nedashkovskaya et al. 2003 NBRC 16625 | JCM
11238 | KMM 3525, AB058919
Genus XII. Runella AL
Runella slithyformis AL (T) Larkin and Williams 1978 ATCC 29530, M62786, Run.slithy
| LSU 4
Runella zeae VP Chelius et al. 2002 NS12, AF137381 | ATCC BAA-293 | LMG 21438
Genus XIII. Spirosoma AL
Spirosoma linguale AL (T) Migula 1894 ATCC 33905 | DSM 74 | LMG 10896
Genus XIV. Sporocytophaga AL
Sporocytophaga myxococcoides AL (T) (Krzemieniewska 1933) Stanier 1940 NRS 142 |
ATCC 10010 | DSM 11118, AJ310654 | NCIMB 9920
Family IV. "Flammeovirgaceae"
Genus I. Flammeovirga VP
Flammeovirga aprica VP (T) (Reichenbach 1989) Nakagawa et al. 1997 <- Cytophaga
aprica (basonym) JL-4 Lewin | ATCC 23126, D12655, Flv.aprica
Genus II. Flexithrix AL 492
Flexithrix dorotheae AL (T) Lewin 1970 Ft d1 | QQ-3 | ATCC 23163, AF039296, Flt.doroth
| DSM 6795 | NBRC 15987
Genus III. Persicobacter VP

49 1
Place men t of Hymen obacter is b ase d o n t he re com men dation of Ludw ig.
49 2
Placemen t b ase d on the posit ion of Fle xithrix in the RDP tree .
319
Persicobacter dif?uens VP (T) (Reichenbach 1989) Nakagawa et al. 1997 <- Cytophaga
dif?uens (basonym) B-1 Lewin | DSM 3658 | IAM 14117 | NCMB 1402, D12660,
Prb.dif?2
Genus IV. Thermonema VP
Thermonema lapsum VP (T) Hudson et al. 1989 23/9 | ATCC 43542 | DSM 5718
Thermonema rossianum VP Nobre et al. 1997 NR-27, Y08956 | DSM 10300
Family V. Crenotrichaceae AL
Genus I. Crenothrix AL (T)
Crenothrix polyspora AL (T) Cohn 1870
Genus II. Chitinophaga VP
Chitinophaga pinensis VP (T) Sangkhobol and Skerman 1981 ACM 2034, AF078775,
Cht.pinens | ATCC 43595 | DSM 2588 | NBRC 15968 | NCIB 11800 | UQM 2034
Genus III. Rhodothermus VP 493
Rhodothermus marinus VP (T) Alfredsson et al. 1995 = Rhodothermus obamensis (ju-
nior heterotypic synonym) R-10, X80994, Rht.marin2 | ATCC 43812 | DSM 4252,
X80994, Rht.marin2
Rhodothermus obamensis VP Sako et al. 1996 = Rhodothermus marinus (senior het-
erotypic synonym) OKD7, X95071, Rht.obamen | DSM 12399 | JCM 9785
Genus IV. Salinibacter VP
Salinibacter ruber VP (T) Antn et al. 2002 M31, AF323500 | CECT 5946 | DSM 13855
Genus V. Toxothrix AL
Toxothrix trichogenes AL (T) (Cholodny 1924) Beger 1953
Phylum BXXI. "Fusobacteria"
Class I. "Fusobacteria "
Order I. "Fusobacteriales"
Family I. "Fusobacteriaceae"
Genus I. Fusobacterium AL
Fusobacterium nucleatum subsp. nucleatum AL (T) Knorr 1922 ATCC 25586, M58683,
Fus.nuclea | ATCC 25586, X55401, Fus.nucle2 | VPI 4355
Fusobacterium nucleatum subsp. animalis VP Gharbia and Shah 1992 DSM 8253 |
NCTC 12276, X55404, Fus.nucle5
Fusobacterium nucleatum subsp. fusiforme VP Gharbia and Shah 1992 DSM 8252 |
NCTC 11326, X55403, Fus.nucle6
Fusobacterium nucleatum subsp. polymorphum VP Dzink et al. 1990 555A | ATCC
10953, X55402, Fus.nucle4 | DSM 20482 | NCTC 10562
Fusobacterium nucleatum subsp. vincentii VP Dzink et al. 1990 ATCC 49256,
AJ006964, Fus.nucle7
Fusobacterium alocis VP Cato et al. 1985 -> Filifactor alocis ATCC 35896, AJ006962,
Fus.aloci2 | ATCC 35896, X55406, Fus.alocis | VPI D40B-5
Fusobacterium equinum VP Dorsch et al. 2001 NCTC 13176 | JCM 11174 | VPB 4027,
AJ295750
Fusobacterium gonidiaformans AL (Tunnicliff and Jackson 1925) Moore and Holdeman
1970 ATCC 25563, X55410, Fus.gonid2
Fusobacterium mortiferum AL (Harris 1901) Moore and Holdeman 1970 ATCC 25557,
M58680, Fus.mortif | ATCC 25557, X55414, Fus.morti2
Fusobacterium naviforme AL (Jungano 1909) Moore and Holdeman 1970 ATCC 25832
Fusobacterium necrogenes AL (Weinberg et al. 1937) Moore and Holdeman 1970
ATCC 25556, X55408, Fus.necgen
Fusobacterium necrophorum subsp. necrophorum AL (Flgge 1886) Moore and Holde-
man 1969 ATCC 25286, X55411, Fus.necpho | JCM 3718 | VPI 2891
Fusobacterium necrophorum subsp. funduliforme VP (ex Hall 1898) Shinjo et al. 1991
Fn524 | JCM 3724
49 3
The ge nus Rhodo thermu s ap pears t o be parap hyletic. It re pres ents a d eep bran ch within the ph ylum, a nd me mber s pec ies app ear as two
well-sepa ra ted points t hat are re moved from th e m ain g ro up of Ba cte ro ide tes . Silv a et al no te that the re is an error with th e s eq uenc e X9 5071
which m aps close to th e S phingo bacteria les. The se quen ce for Rh odot hermus m arin us, on the othe r han d, m aps to a loc ation dis tan t from
the o ther mem bers o f t he fam ily.
320
Fusobacterium perfoetens AL (Tissier 1905) Moore and Holdeman 1973 ATCC 29250,
M58684, Fus.perfoe
Fusobacterium periodonticum VP Slots et al. 1984 EK1-15 | ATCC 33693, X55405,
Fus.period
Fusobacterium plautii AL Seguin 1928 -> Eubacterium plautii Pr S1 | ATCC 29863 |
DSM 4000 | VPI 0310
Fusobacterium polysaccharolyticum VP van Gylswyk 1981 -> Clostridium polysaccha-
rolyticum B | ATCC 33142 | DSM 1801, X71858, C.polsacch | DSM 1801, X77839,
C.polsacc2
Fusobacterium prausnitzii AL (Hauduroy et al. 1937) Moore and Holdeman 1970 ->
Faecalibacterium prausnitzi ATCC 27768, AJ413954
Fusobacterium pseudonecrophorum VP (ex Prevot 1940) Shinjo et al. 1990 = Fusobac-
terium varium (senior heterotypic synonym) Fn521 | JCM 3722
Fusobacterium russii AL (Hauduroy et al. 1937) Moore and Holdeman 1970 ATCC
25533, M58681, Fus.russi | ATCC 25533, X55409, Fus.russi2
Fusobacterium simiae VP Slots and Potts 1982 7511 R2-13 | ATCC 33568, M58685,
Fus.simiae | ATCC 33568, X55407, Fus.simia2
Fusobacterium sulci VP Cato et al. 1985 -> Eubacterium sulci ATCC 35585,
AJ006963, Fus.sulci1 | VPI D45A-29A
Fusobacterium ulcerans VP Adriaans and Shah 1988 NCTC 12111, X55412, Fus.ulcera
Fusobacterium varium AL (Eggerth and Gagnon 1933) Moore and Holdeman 1969 =
Fusobacterium pseudonecrophorum (junior heterotypic synonym) ATCC 8501,
M58686, Fus.varium
Genus II. Ilyobacter VP 494
Ilyobacter polytropus VP (T) Stieb and Schink 1985 CuHbu 1 | DSM 2926, AJ307981
Ilyobacter dela?eldii VP Janssen and Harfoot 1991 10cr1 | ATCC 49679 | DSM 5704 495
Ilyobacter insuetus VP Brune et al. 2002 VenChi2 | ATCC BAA-291 | DSM 6831,
AJ307980
Ilyobacter tartaricus VP Schink 1985 GraTa2 | DSM 2382, AJ307982
Genus III. Leptotrichia AL
Leptotrichia buccalis AL (T) (Robin 1853) Trevisan 1879 C-1013-b | ATCC 14201 | DSM
1135 | NCTC 10249, X90831, Lpt.bucca3
Leptotrichia goodfellowii VP Eribe et al. 2004 LB 57, AY029807 | CCUG 32286 | CIP
107915
Leptotrichia hofstadii VP Eribe et al. 2004 LB 23, AY029803 | CCUG 47504 | CIP
107917
Leptotrichia shahii VP Eribe et al. 2004 LB 37, AY029806 | CCUG 47503 | CIP 107916
Leptotrichia trevisanii VP Tee et al. 2002 496 "Wee Tee" 1999, AF206305 | ATCC 700907
497
Leptotrichia wadei VP Eribe et al. 2004 LB 16, AY029802 | CCUG 47505 | CIP 107918
Genus IV. Propionigenium VP
Propionigenium modestum VP (T) Schink and Pfennig 1983 Gra Succ 2, X54275 | DSM
2376
Propionigenium maris VP Janssen and Liesack 1996 10succ1, X84049, Prg.maris | DSM
9537
Genus V. Sebaldella VP
Sebaldella termitidis VP (T) (Sebald 1962) Collins and Shah 1986 <- Bacteroides termi-
tidis (basonym) ATCC 33386, M58678, Sbd.termit | NCTC 11300
Genus VI. Streptobacillus AL
49 4
Place men t o f Ilyo bacter is ba sed on th e recom men dation of Ludwig.
49 5
B rune et a l. in dicate that Ilyob acter dela?eldii is m isid enti?e d an d s hou ld be t ra nsf erre d to the genu s Clos trid ium
49 6
49 7
321
Streptobacillus moniliformis AL (T) Levaditi et al. 1925 9901 | ATCC 14647, Z35305,
Stb.monili | DSM 12112
Genus VII. Sneathia VP
Sneathia sanguinegens VP (T) Collins et al. 2002 CCUG 41628, AJ344093 | CIP 106906
Family II. Incertae sedis VP
Genus I. Cetobacterium VP
Cetobacterium ceti VP (T) Foster et al. 1996 M-3333, X78419, Cb.ceti1 | NCFB 3026
Phylum BXXII. Verrucomicrobia "
"
Class I. Verrucomicrobiae VP 498

Order I. Verrucomicrobiales VP (T)
Family I. Verrucomicrobiaceae VP
Genus I. Verrucomicrobium VP (T)
Verrucomicrobium spinosum VP (T) Schlesner 1988 ATCC 43997 | DSM 4136, X90515,
Ver.spino2 | IFAM 1439
Genus II. Prosthecobacter VP
Prosthecobacter fusiformis VP (T) Staley et al. 1980 FC4, U60015, Prsb.fusfm | ATCC
25309 | DSM 8960
Prosthecobacter debontii VP Hedlund et al. 1998 FC3, U60014, Prsb.dbont | ATCC
700200
Prosthecobacter dejongeii VP Hedlund et al. 1998 FC1, U60012, Prsb.djong | ATCC
27091
Prosthecobacter vanneervenii VP Hedlund et al. 1998 FC2, U60013, Prsb.vnnrv | ATCC
700199
Family II. "Opitutaceae"
Genus I. Opitutus VP (T)
Opitutus terrae VP (T) Chin et al. 2001 499 PB901, AJ229235 | DSM 11246
Family III. "Victivallaceae"
Genus I. Victivallis VP
Victivallis vadensis VP (T) Zoetendal et al. 2003 Cello, AY049713 | ATCC BAA-548 |
DSM 14823
500
Family IV. Xiphinematobacteriaceae"

"
Genus I. Xiphinematobacter VP
Candidatus "Xiphinematobacter brevicollii" Vandekerckhove et al. 2000 AF217462
Candidatus "Xiphinematobacter americanii" Vandekerckhove et al. 2000 AF217460
Candidatus "Xiphinematobacter revesi" Vandekerckhove et al. 2000 AF217461
Phylum BXXIII. "Dictyoglomi " 501
Class I. "Dictyoglomi"
Order I. "Dictyoglomales"
Family I. "Dictyoglomaceae"
Genus I. Dictyoglomus VP
Dictyoglomus thermophilum VP (T) Saiki et al. 1985 H-6-12 | ATCC 35947 | DSM 3960,
X69194, Dgl.thmoph
Dictyoglomus turgidum VP Svetlichny and Svetlichnaya 1988 Z-1310 | DSM 6724
Phylum BXXIV. Gemmatimonadetes VP
Class I. Gemmatimonadetes VP
Order I. Gemmatimonadales VP (T)
Family I. Gemmatimonadaceae VP
49 8
Both the A RB and RDP trees supp ort placeme nt o f the Verruc omic ro bia les into a s ep arate phy lum , c lo se to the Chlamy dia. This is also
bo rn e out in t he PCA plo ts.
49 9
50 0
Misplaced in Dict yog lom aceae. A lth ough Zoe tenda l et al. plac e this genu s in to the Verruc omicrob ia, G arrity e t a l. sh ow a muc h clos er
af?liation with Chalma ydiae.
50 1
L udwig recom mend s pla ce ment of Dictyoglomu s int o a s eparate ph ylum. It ha s been m ove d from Volum e III to Volu me V to p ermit
ad equa te t ime fo r resolu tion of prob lem s asso ciated with this tax on.
322
Genus I. Gemmatimonas VP (T)

Gemmatimonas aurantiaca VP (T) Zhang et al. 2003 T-27, AB072735 | DSM 14586 |
JCM 11422
323
Index Acetobacterium paludosum ...........................................1 55

Acetobacterium tundrae ................................................1 55
A Acetobacterium wieringae .............................................1 55
Abiotrophia .................................................................195 Acetobacterium woodii .................................................1 55
Abiotrophia adiacens ....................................................195 Aceto?lamentum ..........................................................3 08
Abiotrophia balaenopterae .............................................195 Aceto?lamentum rigidum ..............................................3 08
Abiotrophia defectiva ...................................................195 Acetogenium ...............................................................1 61
Abiotrophia elegans ......................................................195 Acetogenium kivui .......................................................1 61
Acetitomaculum ...........................................................149 Acetohalobium.............................................................1 65
Acetitomaculum ruminis ...............................................149 Acetohalobium arabaticum ............................................1 65
Acetivibrio ..................................................................147 Acetomicrobium ..........................................................3 08
Acetivibrio cellulolyticus ..............................................147 Acetomicrobium faecale ...............................................3 08
Acetivibrio cellulosolvens .............................................147 Acetomicrobium ?avidum .............................................3 08
Acetivibrio ethanolgignens ............................................147 Acetonema ..................................................................1 58
Acetivibrio multivorans ................................................147 Acetonema longum .......................................................1 58
Acetoanaerobium .........................................................204 Acetothermus ...............................................................3 08
Acetoanaerobium noterae ..............................................204 Acetothermus paucivorans ............................................3 08
Acetobacter ................................................................. 36 Acholeplasma ..............................................................1 71
Acetobacter aceti.......................................................... 36 Acholeplasma axanthum ...............................................1 71
Acetobacter aceti subsp. aceti ........................................ 36 Acholeplasma brassicae ................................................1 71
Acetobacter aceti subsp. liquefaciens ............................. 36 Acholeplasma cavigenitalium ........................................1 71
Acetobacter aceti subsp. orleanensis ............................... 36 Acholeplasma entomophilum.........................................1 71
Acetobacter aceti subsp. xylinus .................................... 36 Acholeplasma equifetale ...............................................1 71
Acetobacter cerevisiae .................................................. 36 Acholeplasma ? orum ....................................................1 71
Acetobacter cibinongensis ............................................ 36 Acholeplasma granularum .............................................1 71
Acetobacter diazotrophicus ........................................... 36 Acholeplasma hippikon .................................................1 71
Acetobacter estunensis .................................................. 36 Acholeplasma laidlawii .................................................1 71
Acetobacter europaeus .................................................. 36 Acholeplasma modicum ................................................1 71
Acetobacter hansenii..................................................... 36 Acholeplasma morum ...................................................1 71
Acetobacter indonesiensis ............................................. 36 Acholeplasma multilocale .............................................1 71
Acetobacter intermedius ................................................ 37 Acholeplasma oculi ......................................................1 72
Acetobacter liquefaciens ............................................... 37 Acholeplasma palmae ...................................................1 72
Acetobacter lovaniensis ................................................ 37 Acholeplasma parvum ..................................................1 72
Acetobacter malorum .................................................... 37 Acholeplasma seiffertii .................................................1 72
Acetobacter methanolicus ............................................. 37 Acholeplasma vituli ......................................................1 72
Acetobacter oboediens .................................................. 37 Acholeplasmataceae................................................1 71
Acetobacter orientalis .................................................. 37 Acholeplasmatales...................................................1 71
Acetobacter orleanensis ................................................ 37 Achromatium ............................................................... 86
Acetobacter pasteurianus subsp. ascendens ..................... 37 Achromatium oxaliferum .............................................. 86
Acetobacter pasteurianus subsp. estunensis ..................... 37 Achromobacter ............................................................ 67
Acetobacter pasteurianus subsp. lovaniensis .................... 37 Achromobacter denitri?cans .......................................... 68
Acetobacter pasteurianus subsp. paradoxus ..................... 37 Achromobacter insolitus ............................................... 68
Acetobacter pasteurianus subsp. pasteurianus .................. 37 Achromobacter piechaudii............................................. 68
Acetobacter peroxydans ................................................ 37 Achromobacter ruhlandii............................................... 68
Acetobacter pomorum ................................................... 37 Achromobacter spanius ................................................. 68
Acetobacter syzygii ..................................................... 37 Achromobacter xylosoxidans subsp. denitri?cans ............ 68
Acetobacter tropicalis ................................................... 37 Achromobacter xylosoxidans subsp. xylosoxidans ........... 68
Acetobacter xylinus subsp. sucrofermentans ................... 37 Acidaminobacter ..........................................................1 47
Acetobacter xylinus subsp. xylinus ................................ 37 Acidaminobacter hydrogenoformans ..............................1 47
Acetobacteraceae..................................................... 36 Acidaminococcaceae ...............................................1 58
Acetobacterium ............................................................155 Acidaminococcus .........................................................1 58
Acetobacterium bakii ....................................................155 Acidaminococcus fermentans ........................................1 58
Acetobacterium carbinolicum ........................................155 Acidianus .................................................................... 12
Acetobacterium ?metarium ...........................................155 Acidianus ambivalens ................................................... 13
Acetobacterium malicum ..............................................155 Acidianus brierleyi ....................................................... 13
324
Acidianus infernus ........................................................ 12 Acinetobacter calcoaceticus ...........................................1 03

Acidilobus .................................................................. 11 Acinetobacter gerneri....................................................1 03
Acidilobus aceticus ....................................................... 11 Acinetobacter grimontii ................................................1 03
Acidimicrobiaceae...................................................205 Acinetobacter haemolyticus ...........................................1 03
Acidimicrobiales......................................................205 Acinetobacter johnsonii ................................................1 03
Acidimicrobidae ......................................................205 Acinetobacter junii .......................................................1 03
Acidimicrobineae ....................................................205 Acinetobacter lwof? i ....................................................1 03
Acidimicrobium ...........................................................205 Acinetobacter radioresistens ..........................................1 03
Acidimicrobium ferrooxidans ........................................205 Acinetobacter schindleri................................................1 03
Acidiphilium ................................................................ 37 Acinetobacter tandoii ....................................................1 03
Acidiphilium acidophilum ............................................. 37 Acinetobacter tjernbergiae .............................................1 03
Acidiphilium aminilyticum ............................................ 38 Acinetobacter towneri ...................................................1 03
Acidiphilium angustum ................................................. 38 Acinetobacter ursingii ...................................................1 03
Acidiphilium cryptum ................................................... 37 Acrocarpospora ............................................................2 87
Acidiphilium facile ....................................................... 38 Acrocarpospora corrugata .............................................2 88
Acidiphilium multivorum .............................................. 38 Acrocarpospora macrocephala .......................................2 88
Acidiphilium organovorum ............................................ 38 Acrocarpospora pleiomorpha .........................................2 87
Acidiphilium rubrum .................................................... 38 Actinoalloteichus .........................................................2 47
Acidisphaera ................................................................ 38 Actinoalloteichus cyanogriseus ......................................2 47
Acidisphaera rubrifaciens .............................................. 38 Actinobacillus ..............................................................1 25
Acidithiobacillaceae ................................................ 83 Actinobacillus actinomycetemcomitans ..........................1 25
Acidithiobacillales ................................................... 83 Actinobacillus arthritidis ..............................................1 25
Acidithiobacillus .......................................................... 83 Actinobacillus capsulatus ..............................................1 25
Acidithiobacillus albertensis .......................................... 83 Actinobacillus delphinicola ...........................................1 25
Acidithiobacillus caldus ................................................ 83 Actinobacillus equuli subsp. equuli ................................1 25
Acidithiobacillus ferrooxidans ....................................... 83 Actinobacillus equuli subsp. haemolyticus ......................1 25
Acidithiobacillus thiooxidans......................................... 83 Actinobacillus hominis .................................................1 26
Acidobacteria...........................................................306 Actinobacillus indolicus ................................................1 26
Acidobacteriaceae ...................................................306 Actinobacillus lignieresii...............................................1 25
Acidobacteriales ......................................................306 Actinobacillus minor ....................................................1 26
Acidobacterium ............................................................306 Actinobacillus muris .....................................................1 26
Acidobacterium capsulatum ...........................................306 Actinobacillus pleuropneumoniae ..................................1 26
Acidocella ................................................................... 38 Actinobacillus porcinus.................................................1 26
Acidocella aminolytica ................................................. 38 Actinobacillus rossii .....................................................1 26
Acidocella facilis.......................................................... 38 Actinobacillus scotiae ...................................................1 26
Acidomonas................................................................. 38 Actinobacillus seminis ..................................................1 26
Acidomonas methanolica .............................................. 38 Actinobacillus succinogenes ..........................................1 26
Acidothermaceae.....................................................298 Actinobacillus suis .......................................................1 26
Acidothermus ..............................................................298 Actinobacillus ureae .....................................................1 26
Acidothermus cellulolyticus ..........................................298 Actinobacteria .........................................................2 05
Acidovorax .................................................................. 69 Actinobacteridae .....................................................2 06
Acidovorax anthurii...................................................... 69 Actinobaculum.............................................................2 08
Acidovorax avenae subsp. avenae .................................. 69 Actinobaculum schaalii .................................................2 08
Acidovorax avenae subsp. cattleyae ............................... 69 Actinobaculum suis ......................................................2 08
Acidovorax avenae subsp. citrulli .................................. 69 Actinobaculum urinale .................................................2 08
Acidovorax de? uvii ...................................................... 69 Actinobispora ..............................................................3 00
Acidovorax dela?eldii ................................................... 70 Actinobispora alaniniphila.............................................3 00
Acidovorax facilis ........................................................ 69 Actinobispora aurantiaca ...............................................3 00
Acidovorax konjaci ...................................................... 70 Actinobispora xinjiangensis ...........................................3 00
Acidovorax temperans .................................................. 70 Actinobispora yunnanensis ............................................3 00
Acidovorax valerianellae ............................................... 70 Actinocorallia ..............................................................3 00
Acinetobacter ...............................................................103 Actinocorallia aurantiaca ...............................................3 00
Acinetobacter baumannii ...............................................103 Actinocorallia glomerata ...............................................3 01
Acinetobacter baylyi .....................................................103 Actinocorallia herbida...................................................3 00
Acinetobacter bouvetii ..................................................103 Actinocorallia libanotica ...............................................3 01
325
Actinocorallia longicatena .............................................301 Actinomadura rubrobrunea ............................................2 96

Actinokineospora .........................................................250 Actinomadura rugatobispora ..........................................2 96
Actinokineospora auranticolor .......................................251 Actinomadura salmonea ................................................2 96
Actinokineospora diospyrosa .........................................251 Actinomadura spadix ....................................................2 96
Actinokineospora enzanensis .........................................251 Actinomadura spiralis ...................................................2 96
Actinokineospora globicatena ........................................251 Actinomadura turkmeniaca ............................................2 97
Actinokineospora inagensis ...........................................251 Actinomadura umbrina .................................................2 97
Actinokineospora riparia ...............................................250 Actinomadura verrucosospora........................................2 97
Actinokineospora terrae ................................................251 Actinomadura vinacea ..................................................2 97
Actinomadura ..............................................................294 Actinomadura viridilutea ...............................................2 97
Actinomadura africana ..................................................294 Actinomadura viridis ....................................................2 97
Actinomadura atramentaria ...........................................294 Actinomadura yumaensis ..............................................2 97
Actinomadura aurantiaca ...............................................294 Actinomyces ................................................................2 06
Actinomadura carminata ...............................................294 Actinomyces bernardiae ................................................2 07
Actinomadura catellatispora ..........................................294 Actinomyces bovis .......................................................2 06
Actinomadura citrea .....................................................294 Actinomyces bowdenii ..................................................2 07
Actinomadura coerulea .................................................294 Actinomyces canis........................................................2 07
Actinomadura coeruleofusca..........................................294 Actinomyces cardiffensis ..............................................2 07
Actinomadura coeruleoviolacea .....................................294 Actinomyces catuli .......................................................2 07
Actinomadura cremea subsp. cremea..............................294 Actinomyces coleocanis ...............................................2 07
Actinomadura cremea subsp. rifamycini .........................294 Actinomyces denticolens ...............................................2 07
Actinomadura echinospora ............................................295 Actinomyces europaeus ................................................2 07
Actinomadura fastidiosa ................................................295 Actinomyces funkei ......................................................2 07
Actinomadura ferruginea ...............................................295 Actinomyces georgiae ...................................................2 07
Actinomadura ? brosa....................................................295 Actinomyces gerencseriae .............................................2 07
Actinomadura ? ava ......................................................295 Actinomyces graevenitzii ..............................................2 07
Actinomadura ? exuosa .................................................295 Actinomyces hongkongensis ..........................................2 07
Actinomadura formosensis ............................................295 Actinomyces hordeovulneris ..........................................2 07
Actinomadura fulvescens ..............................................295 Actinomyces howellii ...................................................2 07
Actinomadura glauci?ava..............................................295 Actinomyces humiferus ................................................2 07
Actinomadura glomerata ...............................................295 Actinomyces hyovaginalis .............................................2 07
Actinomadura helvata ...................................................295 Actinomyces israelii .....................................................2 07
Actinomadura hibisca ...................................................295 Actinomyces marimammalium ......................................2 07
Actinomadura kijaniata .................................................295 Actinomyces meyeri .....................................................2 07
Actinomadura latina .....................................................295 Actinomyces naeslundii ................................................2 07
Actinomadura libanotica ...............................................295 Actinomyces neuii subsp. anitratus ................................2 07
Actinomadura livida .....................................................295 Actinomyces neuii subsp. neuii......................................2 07
Actinomadura longicatena .............................................295 Actinomyces odontolyticus ...........................................2 07
Actinomadura longispora ..............................................295 Actinomyces pyogenes .................................................2 07
Actinomadura luteo?uorescens ......................................295 Actinomyces radicidentis ..............................................2 08
Actinomadura macra.....................................................296 Actinomyces radingae...................................................2 08
Actinomadura madurae .................................................294 Actinomyces slackii......................................................2 08
Actinomadura malachitica .............................................296 Actinomyces suimastitidis .............................................2 08
Actinomadura mexicana ................................................296 Actinomyces suis .........................................................2 08
Actinomadura meyerii ..................................................296 Actinomyces turicensis .................................................2 08
Actinomadura namibiensis ............................................296 Actinomyces urogenitalis ..............................................2 08
Actinomadura nitritigenes .............................................296 Actinomyces vaccimaxillae ...........................................2 08
Actinomadura oligospora ..............................................296 Actinomyces viscosus ...................................................2 08
Actinomadura pelletieri.................................................296 Actinomycetaceae....................................................2 06
Actinomadura polychroma ............................................296 Actinomycetales.......................................................2 06
Actinomadura pusilla ....................................................296 Actinomycineae .......................................................2 06
Actinomadura recticatena ..............................................296 Actinoplanes ................................................................2 40
Actinomadura roseola ...................................................296 Actinoplanes armeniacus ...............................................2 40
Actinomadura roseoviolacea..........................................296 Actinoplanes auranticolor ..............................................2 40
Actinomadura rubra ......................................................296 Actinoplanes brasiliensis ...............................................2 41
326
Actinoplanes caeruleus .................................................241 Aeromonas ..................................................................1 12

Actinoplanes campanulatus ...........................................241 Aeromonas allosaccharophila ........................................1 12
Actinoplanes capillaceus ...............................................241 Aeromonas bestiarum ...................................................1 12
Actinoplanes consettensis ..............................................241 Aeromonas caviae ........................................................1 12
Actinoplanes cyaneus ...................................................241 Aeromonas culicicola ...................................................1 12
Actinoplanes deccanensis ..............................................241 Aeromonas encheleia ....................................................1 12
Actinoplanes derwentensis ............................................241 Aeromonas enteropelogenes ..........................................1 12
Actinoplanes digitatis ...................................................241 Aeromonas eucrenophila ...............................................1 12
Actinoplanes durhamensis .............................................241 Aeromonas hydrophila subsp. anaerogenes .....................1 12
Actinoplanes ferrugineus ...............................................241 Aeromonas hydrophila subsp. dhakensis .........................1 12
Actinoplanes friuliensis .................................................241 Aeromonas hydrophila subsp. hydrophila .......................1 12
Actinoplanes globisporus ..............................................241 Aeromonas hydrophila subsp. proteolytica ......................1 12
Actinoplanes humidus ...................................................241 Aeromonas hydrophila subsp. ranae ...............................1 12
Actinoplanes italicus.....................................................241 Aeromonas ichthiosmia.................................................1 12
Actinoplanes lobatus.....................................................241 Aeromonas jandaei .......................................................1 13
Actinoplanes minutisporangius ......................................241 Aeromonas media.........................................................1 13
Actinoplanes missouriensis ...........................................241 Aeromonas popof?i ......................................................1 13
Actinoplanes palleronii .................................................241 Aeromonas punctata subsp. caviae .................................1 13
Actinoplanes philippinensis ...........................................240 Aeromonas punctata subsp. punctata ..............................1 13
Actinoplanes rectilineatus .............................................242 Aeromonas salmonicida subsp. achromogenes ................1 13
Actinoplanes regularis ..................................................242 Aeromonas salmonicida subsp. masoucida ......................1 13
Actinoplanes utahensis..................................................242 Aeromonas salmonicida subsp. pectinolytica...................1 13
Actinopolymorpha ........................................................245 Aeromonas salmonicida subsp. salmonicida ....................1 13
Actinopolymorpha singaporensis ...................................245 Aeromonas salmonicida subsp. smithia...........................1 13
Actinopolyspora ...........................................................247 Aeromonas schubertii ...................................................1 13
Actinopolyspora halophila .............................................247 Aeromonas simiae ........................................................1 13
Actinopolyspora iraqiensis ............................................247 Aeromonas sobria.........................................................1 13
Actinopolyspora mortivallis ...........................................247 Aeromonas trota ...........................................................1 13
Actinosynnema ............................................................250 Aeromonas veronii .......................................................1 13
Actinosynnema mirum ..................................................250 Aeropyrum .................................................................. 11
Actinosynnema pretiosum subsp. auranticum ..................250 Aeropyrum camini........................................................ 12
Actinosynnema pretiosum subsp. pretiosum ....................250 Aeropyrum pernix ........................................................ 11
Actinosynnemataceae .............................................250 Aestuariibacter .............................................................1 05
Aegyptianella ............................................................... 41 Aestuariibacter halophilus .............................................1 05
Aegyptianella pullorum ................................................. 41 Aestuariibacter salexigens .............................................1 05
Aequorivita..................................................................313 A? pia .......................................................................... 58
Aequorivita antarctica ...................................................313 A? pia birgiae ............................................................... 58
Aequorivita crocea .......................................................313 A? pia broomeae ........................................................... 58
Aequorivita lipolytica ...................................................313 A? pia clevelandensis .................................................... 58
Aequorivita sublithincola ..............................................313 A? pia felis ................................................................... 58
Aeriscardovia ...............................................................300 A? pia massiliensis........................................................ 58
Aeriscardovia aeriphila .................................................300 Agitococcus .................................................................1 96
Aerococcaceae .........................................................195 Agitococcus lubricus ....................................................1 96
Aerococcus ..................................................................195 Agreia .........................................................................2 18
Aerococcus christensenii ...............................................195 Agreia bicolorata ..........................................................2 18
Aerococcus sanguinicola ...............................................195 Agreia pratensis ...........................................................2 19
Aerococcus urinae ........................................................195 Agrobacterium ............................................................. 52
Aerococcus urinaehominis ............................................195 Agrobacterium atlanticum ............................................. 53
Aerococcus viridans .....................................................195 Agrobacterium ferrugineum ........................................... 53
Aeromicrobium ............................................................245 Agrobacterium gelatinovorum ....................................... 53
Aeromicrobium erythreum ............................................245 Agrobacterium larrymoorei ........................................... 53
Aeromicrobium fastidiosum ..........................................245 Agrobacterium meteori ................................................. 53
Aeromicrobium marinum ..............................................245 Agrobacterium radiobacter ............................................ 53
Aeromonadaceae .....................................................112 Agrobacterium rhizogenes ............................................. 53
Aeromonadales ........................................................112 Agrobacterium rubi ...................................................... 53
327
Agrobacterium stellulatum ............................................ 53 Alicyclobacillus acidiphilus ...........................................1 80

Agrobacterium tumefaciens ........................................... 53 Alicyclobacillus acidocaldarius subsp. acidocaldarius ......1 80
Agrobacterium vitis ...................................................... 53 Alicyclobacillus acidocaldarius subsp. rittmannii.............1 80
Agrococcus..................................................................219 Alicyclobacillus acidoterrestris ......................................1 80
Agrococcus baldri .......................................................219 Alicyclobacillus cycloheptanicus ...................................1 81
Agrococcus citreus .......................................................219 Alicyclobacillus herbarius ............................................1 81
Agrococcus jenensis .....................................................219 Alicyclobacillus hesperidum ..........................................1 81
Agromonas .................................................................. 58 Alicyclobacillus sendaiensis ..........................................1 81
Agromonas oligotrophica .............................................. 58 Alishewanella ..............................................................1 05
Agromyces ..................................................................219 Alishewanella fetalis ....................................................1 05
Agromyces aurantiacus .................................................219 Alistipes ......................................................................3 09
Agromyces bracchium ..................................................219 Alistipes ?negoldii .......................................................3 09
Agromyces cerinus subsp. cerinus..................................219 Alistipes putredinis .......................................................3 09
Agromyces cerinus subsp. nitratus .................................219 Alkalibacterium ...........................................................1 96
Agromyces fucosus subsp. fucosus ................................219 Alkalibacterium olivapovliticus .....................................1 96
Agromyces fucosus subsp. hippuratus ............................219 Alkaliphilus .................................................................1 47
Agromyces luteolus ......................................................219 Alkaliphilus crotonatoxidans .........................................1 47
Agromyces mediolanus .................................................219 Alkaliphilus transvaalensis ............................................1 47
Agromyces ramosus .....................................................219 Alkalispirillum ............................................................. 82
Agromyces rhizosphaerae .............................................219 Alkalispirillum mobile ................................................. 82
Ahrensia...................................................................... 43 Allisonella ...................................................................1 58
Ahrensia kielensis ........................................................ 43 Allisonella histaminiformans .........................................1 58
Albibacter ................................................................... 57 Allochromatium ........................................................... 79
Albibacter methylovorans ............................................. 57 Allochromatium minutissimum ...................................... 79
Albidovulum ................................................................ 43 Allochromatium vinosum .............................................. 79
Albidovulum inexpectatum ........................................... 43 Allochromatium warmingii ........................................... 79
Alcaligenaceae ......................................................... 67 Allofustis ....................................................................1 96
Alcaligenes .................................................................. 67 Allofustis seminis .........................................................1 96
Alcaligenes aestus ........................................................ 67 Alloiococcus ................................................................1 96
Alcaligenes aquamarinus ............................................... 67 Alloiococcus otitis ........................................................1 96
Alcaligenes cupidus ...................................................... 67 Allomonas ...................................................................1 11
Alcaligenes defragrans .................................................. 67 Allomonas enterica .......................................................1 11
Alcaligenes denitri?cans ............................................... 67 Allorhizobium .............................................................. 53
Alcaligenes eutrophus ................................................... 67 Allorhizobium undicola ................................................ 53
Alcaligenes faecalis subsp. faecalis ................................ 67 Alphaproteobacteria ............................................... 34
Alcaligenes faecalis subsp. homari ................................. 67 Alterococcus ................................................................1 14
Alcaligenes faecalis subsp. parafaecalis .......................... 67 Alterococcus agarolyticus .............................................1 14
Alcaligenes latus .......................................................... 67 Alteromonadaceae...................................................1 04
Alcaligenes paci?cus .................................................... 67 Alteromonadales .....................................................1 04
Alcaligenes paradoxus .................................................. 67 Alteromonas ................................................................1 04
Alcaligenes piechaudii .................................................. 67 Alteromonas atlantica ...................................................1 04
Alcaligenes ruhlandii .................................................... 67 Alteromonas aurantia ....................................................1 04
Alcaligenes venustus .................................................... 67 Alteromonas carrageenovora .........................................1 04
Alcaligenes xylosoxidans .............................................. 67 Alteromonas citrea .......................................................1 04
Alcalilimnicola ............................................................ 82 Alteromonas colwelliana ...............................................1 04
Alcalilimnicola halodurans ............................................ 82 Alteromonas communis ................................................1 04
Alcanivoraceae ........................................................ 92 Alteromonas denitri?cans ..............................................1 04
Alcanivorax ................................................................. 92 Alteromonas distincta ...................................................1 04
Alcanivorax borkumensis .............................................. 92 Alteromonas elyakovii ..................................................1 04
Alcanivorax jadensis..................................................... 92 Alteromonas espejiana ..................................................1 04
Alcanivorax venustensis ................................................ 92 Alteromonas fuliginea...................................................1 04
Alicycliphilus .............................................................. 70 Alteromonas haloplanktis ..............................................1 04
Alicycliphilus denitri? cans ............................................ 70 Alteromonas hanedai ....................................................1 04
Alicyclobacillaceae..................................................180 Alteromonas luteoviolacea ............................................1 04
Alicyclobacillus ...........................................................180 Alteromonas macleodii .................................................1 04
328
Alteromonas nigrifaciens ..............................................104 Amycolatopsis rubida ...................................................2 48

Alteromonas putrefaciens ..............................................105 Amycolatopsis rugosa ...................................................2 48
Alteromonas rubra ........................................................105 Amycolatopsis sacchari.................................................2 48
Alteromonas tetraodonis ...............................................105 Amycolatopsis sulphurea ..............................................2 48
Alteromonas undina......................................................105 Amycolatopsis thermo?ava ...........................................2 48
Alteromonas vaga.........................................................105 Amycolatopsis tolypomycina.........................................2 48
Alysiella...................................................................... 74 Amycolatopsis vancoresmycina .....................................2 48
Alysiella ?liformis ........................................................ 74 Anabaena .................................................................... 32
Amaricoccus ................................................................ 43 Anabaena cylindrica ..................................................... 32
Amaricoccus kaplicensis ............................................... 43 Anabaena sphaerica ...................................................... 32
Amaricoccus macauensis .............................................. 43 Anabaenopsis ............................................................... 32
Amaricoccus tamworthensis .......................................... 43 Anaeroarcus.................................................................1 58
Amaricoccus veronensis ................................................ 43 Anaeroarcus burkinensis ...............................................1 58
Aminobacter ................................................................ 56 Anaerobacter ...............................................................1 47
Aminobacter aganoensis ............................................... 56 Anaerobacter polyendosporus ........................................1 47
Aminobacter aminovorans ............................................. 56 Anaerobaculum ............................................................1 61
Aminobacter niigataensis .............................................. 56 Anaerobaculum mobile ................................................1 61
Aminobacterium ..........................................................161 Anaerobaculum thermoterrenum ....................................1 61
Aminobacterium colombiense........................................161 Anaerobiospirillum .......................................................1 13
Aminobacterium mobile ................................................161 Anaerobiospirillum succiniciproducens...........................1 13
Aminomonas ...............................................................161 Anaerobiospirillum thomasii..........................................1 13
Aminomonas paucivorans .............................................161 Anaerobranca...............................................................1 61
Ammonifex .................................................................162 Anaerobranca gottschalkii .............................................1 61
Ammonifex degensii.....................................................162 Anaerobranca horikoshii ...............................................1 61
Ammoniphilus .............................................................184 Anaerococcus ..............................................................1 51
Ammoniphilus oxalaticus ..............................................184 Anaerococcus hydrogenalis ...........................................1 51
Ammoniphilus oxalivorans ............................................184 Anaerococcus lactolyticus .............................................1 51
Amoebobacter.............................................................. 79 Anaerococcus octavius ..................................................1 51
Amoebobacter pedioformis ........................................... 79 Anaerococcus prevotii ..................................................1 51
Amoebobacter pendens ................................................. 79 Anaerococcus tetradius .................................................1 51
Amoebobacter purpureus .............................................. 79 Anaerococcus vaginalis.................................................1 51
Amoebobacter roseus .................................................... 79 Anaero?lum.................................................................1 49
Amphibacillus..............................................................178 Anaero?lum agile.........................................................1 49
Amphibacillus fermentum ............................................178 Anaero?lum pentosovorans ...........................................1 49
Amphibacillus tropicus ................................................178 Anaeroglobus ..............................................................1 58
Amphibacillus xylanus..................................................178 Anaeroglobus geminatus ..............................................1 58
Amycolatopsis .............................................................247 Anaerolinaeceea ...................................................... 29
Amycolatopsis alba ......................................................247 Anaerolinaeles ......................................................... 29
Amycolatopsis albido? avus ...........................................247 Anaerolinea ................................................................. 29
Amycolatopsis azurea ...................................................247 Anaerolinea thermophila ............................................... 29
Amycolatopsis balhimycina ...........................................247 Anaerolineae............................................................ 29
Amycolatopsis coloradensis ...........................................247 Anaeromusa.................................................................1 58
Amycolatopsis decaplanina ...........................................248 Anaeromusa acidaminophila ..........................................1 58
Amycolatopsis eurytherma ...........................................248 Anaeromyxobacter .......................................................1 34
Amycolatopsis fastidiosa ...............................................248 Anaeromyxobacter dehalogenans ...................................1 35
Amycolatopsis japonica ................................................248 Anaerophaga................................................................3 08
Amycolatopsis keratiniphila ..........................................248 Anaerophaga thermohalophila ......................................3 08
Amycolatopsis keratiniphila subsp. keratiniphila .............248 Anaeroplasma ..............................................................1 72
Amycolatopsis keratiniphila subsp. nogabecina ...............248 Anaeroplasma abactoclasticum ......................................1 72
Amycolatopsis lurida ....................................................248 Anaeroplasma bactoclasticum ........................................1 72
Amycolatopsis mediterranei ..........................................248 Anaeroplasma intermedium ...........................................1 72
Amycolatopsis methanolica ...........................................248 Anaeroplasma varium ...................................................1 72
Amycolatopsis orientalis subsp. lurida ............................247 Anaeroplasmataceae ...............................................1 72
Amycolatopsis orientalis subsp. orientalis .......................247 Anaeroplasmatales ..................................................1 72
Amycolatopsis palatopharyngis......................................248 Anaerorhabdus .............................................................3 08
329
Anaerorhabdus furcosa .................................................308 Aquaspirillum autotrophicum ........................................ 74

Anaerosinus .................................................................158 Aquaspirillum delicatum ............................................... 74
Anaerosinus glycerini ...................................................158 Aquaspirillum dispar .................................................... 74
Anaerostipes ................................................................149 Aquaspirillum fasciculus ............................................... 75
Anaerostipes caccae......................................................149 Aquaspirillum giesbergeri ............................................. 75
Anaerotruncus..............................................................147 Aquaspirillum gracile ................................................... 75
Anaerotruncus colihominis ............................................147 Aquaspirillum itersonii subsp. itersonii ........................... 75
Anaerovibrio ................................................................158 Aquaspirillum itersonii subsp. nipponicum ..................... 75
Anaerovibrio burkinabensis ...........................................158 Aquaspirillum magnetotacticum..................................... 75
Anaerovibrio glycerini ..................................................158 Aquaspirillum metamorphum ........................................ 75
Anaerovibrio lipolyticus ................................................158 Aquaspirillum peregrinum subsp. integrum ..................... 75
Anaerovorax ................................................................155 Aquaspirillum peregrinum subsp. peregrinum ................. 75
Anaerovorax odorimutans .............................................155 Aquaspirillum polymorphum ......................................... 75
Anaplasma................................................................... 40 Aquaspirillum psychrophilum ........................................ 75
Anaplasma bovis .......................................................... 40 Aquaspirillum putridiconchylium ................................... 75
Anaplasma caudatum .................................................... 40 Aquaspirillum serpens subsp. bengal .............................. 74
Anaplasma centrale ...................................................... 40 Aquaspirillum serpens subsp. serpens ............................. 74
Anaplasma marginale ................................................... 40 Aquaspirillum sinuosum ............................................... 75
Anaplasma ovis ............................................................ 40 Aquicella..................................................................... 89
Anaplasma phagocytophilum ......................................... 40 Aquicella lusitana......................................................... 89
Anaplasma platys ......................................................... 41 Aquicella siphonis ........................................................ 89
Anaplasmataceae..................................................... 40 Aquifex ....................................................................... 24
Ancalochloris ............................................................... 33 Aquifex pyrophilus ....................................................... 24
Ancalochloris per?lievii ................................................ 34 Aqui?caceae............................................................. 24
Ancalomicrobium ......................................................... 60 Aqui?cae .................................................................. 24
Ancalomicrobium adetum ............................................. 60 Aqui?cales................................................................ 24
Ancylobacter ............................................................... 60 Arcanobacterium ..........................................................2 08
Ancylobacter aquaticus ................................................. 60 Arcanobacterium bernardiae ..........................................2 08
Ancylobacter rudongensis ............................................. 60 Arcanobacterium haemolyticum.....................................2 08
Aneurinibacillus ...........................................................184 Arcanobacterium hippocoleae .......................................2 08
Aneurinibacillus aneurinilyticus .....................................184 Arcanobacterium phocae ...............................................2 08
Aneurinibacillus danicus ...............................................184 Arcanobacterium pluranimalium ....................................2 08
Aneurinibacillus migulanus ...........................................184 Arcanobacterium pyogenes ...........................................2 08
Aneurinibacillus thermoaerophilus .................................184 Archaea .................................................................... 11
Angulomicrobium ........................................................ 60 Archaeoglobaceae ................................................... 24
Angulomicrobium tetraedrale ........................................ 60 Archaeoglobales ...................................................... 24
Anoxybacillus ..............................................................178 Archaeoglobi............................................................ 24
Anoxybacillus ?avithermus ...........................................178 Archaeoglobus ............................................................. 24
Anoxybacillus pushchinoensis .......................................178 Archaeoglobus fulgidus ................................................ 24
Antarctobacter ............................................................. 43 Archaeoglobus profundus .............................................. 24
Antarctobacter heliothermus .......................................... 43 Archaeoglobus vene?cus ............................................... 24
Aphanizomenon ........................................................... 32 Archangium .................................................................1 35
Aphanizomenon ?os-aquae ........................................... 32 Archangium gephyra ....................................................1 35
Aquabacter .................................................................. 60 Arcobacter ...................................................................1 38
Aquabacter spiritensis ................................................... 60 Arcobacter butzleri .......................................................1 38
Aquabacterium ............................................................. 71 Arcobacter cryaerophilus ..............................................1 38
Aquabacterium citratiphilum ......................................... 71 Arcobacter nitro?gilis ...................................................1 38
Aquabacterium commune.............................................. 71 Arcobacter skirrowii .....................................................1 38
Aquabacterium parvum ................................................. 71 Arenibacter ..................................................................3 13
Aquamicrobium ........................................................... 56 Arenibacter latericius ....................................................3 13
Aquamicrobium de?uvii ............................................... 56 Arhodomonas .............................................................. 82
Aquaspirillum .............................................................. 74 Arhodomonas aquaeolei ................................................ 82
Aquaspirillum anulus .................................................... 74 Arsenicicoccus .............................................................2 16
Aquaspirillum aquaticum .............................................. 74 Arsenicicoccus bolidensis .............................................2 16
Aquaspirillum arcticum ................................................. 74 Arsenophonus ..............................................................1 14
330
Arsenophonus nasoniae.................................................114 Asanoa ferruginea .......................................................2 42

Arsenophonus triatominarum .........................................114 Asanoa ishikariensis ....................................................2 42
Arthrobacter ................................................................209 Asteroleplasma ............................................................1 72
Arthrobacter agilis ........................................................209 Asteroleplasma anaerobium ...........................................1 72
Arthrobacter albus ........................................................209 Asticcacaulis................................................................ 51
Arthrobacter atrocyaneus ..............................................209 Asticcacaulis biprosthecium .......................................... 51
Arthrobacter aurescens..................................................209 Asticcacaulis excentricus .............................................. 51
Arthrobacter chlorophenolicus .......................................209 Atopobacter .................................................................1 98
Arthrobacter citreus ......................................................209 Atopobacter phocae ......................................................1 98
Arthrobacter creatinolyticus ...........................................209 Atopobium ..................................................................2 05
Arthrobacter crystallopoietes .........................................210 Atopobium fossor .........................................................2 05
Arthrobacter cumminsii ................................................210 Atopobium minutum.....................................................2 05
Arthrobacter duodecadis ...............................................210 Atopobium parvulum ....................................................2 06
Arthrobacter ?avescens .................................................210 Atopobium rimae .........................................................2 06
Arthrobacter ?avus .......................................................210 Atopobium vaginae ......................................................2 06
Arthrobacter gandavensis ..............................................210 Aurantimonadaceae................................................ 54
Arthrobacter globiformis ...............................................209 Aurantimonas .............................................................. 54
Arthrobacter histidinolovorans .......................................210 Aurantimonas coralicida ............................................... 54
Arthrobacter ilicis.........................................................210 Aureobacterium ...........................................................2 19
Arthrobacter luteolus ....................................................210 Aureobacterium arabinogalactanolyticum .......................2 19
Arthrobacter methylotrophus ........................................210 Aureobacterium barkeri ................................................2 19
Arthrobacter mysorens ..................................................210 Aureobacterium esteraromaticum ...................................2 19
Arthrobacter nasiphocae ...............................................210 Aureobacterium ?avescens ............................................2 19
Arthrobacter nicotianae .................................................210 Aureobacterium keratanolyticum ...................................2 19
Arthrobacter nicotinovorans ..........................................210 Aureobacterium liquefaciens .........................................2 19
Arthrobacter oxydans ....................................................210 Aureobacterium luteolum ..............................................2 20
Arthrobacter pascens ....................................................210 Aureobacterium resistens ..............................................2 20
Arthrobacter picolinophilus ...........................................210 Aureobacterium saperdae ..............................................2 20
Arthrobacter polychromogenes ......................................210 Aureobacterium schleiferi .............................................2 20
Arthrobacter protophormiae...........................................210 Aureobacterium terrae ..................................................2 20
Arthrobacter psychrolactophilus.....................................210 Aureobacterium terregens .............................................2 20
Arthrobacter radiotolerans .............................................210 Aureobacterium testaceum ............................................2 20
Arthrobacter ramosus ....................................................210 Aureobacterium trichothecenolyticum ............................2 20
Arthrobacter rhombi .....................................................210 Azoarcus ..................................................................... 77
Arthrobacter roseus .....................................................211 Azoarcus anaerobius ..................................................... 77
Arthrobacter siderocapsulatus ........................................211 Azoarcus buckelii......................................................... 77
Arthrobacter simplex ....................................................211 Azoarcus communis ..................................................... 77
Arthrobacter sulfonivorans ...........................................211 Azoarcus evansii .......................................................... 77
Arthrobacter sulfureus ..................................................211 Azoarcus indigens ........................................................ 77
Arthrobacter terregens ..................................................211 Azoarcus toluclasticus .................................................. 77
Arthrobacter tumescens .................................................211 Azoarcus tolulyticus ..................................................... 77
Arthrobacter uratoxydans ..............................................211 Azoarcus toluvorans ..................................................... 77
Arthrobacter ureafaciens ...............................................211 Azomonas ...................................................................1 01
Arthrobacter variabilis ..................................................211 Azomonas agilis ...........................................................1 01
Arthrobacter viscosus ...................................................211 Azomonas insignis .......................................................1 01
Arthrobacter woluwensis ...............................................211 Azomonas macrocytogenes ...........................................1 01
Arthrospira .................................................................. 31 Azonexus .................................................................... 77
Arthrospira jenneri ....................................................... 31 Azonexus fungiphilus ................................................... 77
Arthrospira maxima ...................................................... 31 Azorhizobium .............................................................. 60
Arthrospira platensis ..................................................... 31 Azorhizobium caulinodans ............................................ 61
Asaia .......................................................................... 38 Azospira ...................................................................... 78
Asaia bogorensis .......................................................... 38 Azospira oryzae ........................................................... 78
Asaia krungthepensis .................................................... 38 Azospirillum ................................................................ 35
Asaia siamensis ............................................................ 38 Azospirillum amazonense ............................................. 35
Asanoa .......................................................................242 Azospirillum brasilense................................................. 35
331
Azospirillum doebereinerae ........................................... 35 Bacillus cohnii .............................................................1 74

Azospirillum halopraeferens .......................................... 35 Bacillus curdlanolyticus ................................................1 74
Azospirillum irakense ................................................... 35 Bacillus cycloheptanicus ...............................................1 74
Azospirillum largimobile............................................... 35 Bacillus decolorationis ..................................................1 74
Azospirillum lipoferum ................................................. 35 Bacillus dipsosauri .......................................................1 74
Azotobacter .................................................................101 Bacillus drentensis........................................................1 74
Azotobacter armeniacus ................................................101 Bacillus edaphicus ........................................................1 74
Azotobacter beijerinckii ................................................101 Bacillus ehimensis ........................................................1 74
Azotobacter chroococcum .............................................101 Bacillus endophyticus ..................................................1 74
Azotobacter macrocytogenes .........................................101 Bacillus fastidiosus .......................................................1 74
Azotobacter nigricans subsp. achromogenes ....................101 Bacillus ?rmus .............................................................1 74
Azotobacter nigricans subsp. nigricans ...........................101 Bacillus ?exus .............................................................1 74
Azotobacter paspali ......................................................101 Bacillus formosus .........................................................1 74
Azotobacter salinestris ..................................................101 Bacillus fumarioli.........................................................1 74
Azotobacter vinelandii ..................................................101 Bacillus funiculus ........................................................1 74
Azovibrio .................................................................... 78 Bacillus fusiformis .......................................................1 74
Azovibrio restrictus ...................................................... 78 Bacillus galactophilus ...................................................1 74
Bacillus galactosidilyticus .............................................1 74
B Bacillus gibsonii ..........................................................1 74
Bacillaceae ...............................................................172 Bacillus globisporus subsp. globisporus ..........................1 74
Bacillales ..................................................................172 Bacillus globisporus subsp. marinus ...............................1 75
Bacilli........................................................................172 Bacillus glucanolyticus .................................................1 75
Bacillus .......................................................................172 Bacillus gordonae.........................................................1 75
Bacillus acidocaldarius .................................................173 Bacillus halmapalus ......................................................1 75
Bacillus acidoterrestris ..................................................173 Bacillus haloalkaliphilus ...............................................1 75
Bacillus aeolius ............................................................173 Bacillus halodenitri?cans ..............................................1 75
Bacillus agaradhaerens..................................................173 Bacillus halodurans ......................................................1 75
Bacillus agri ................................................................173 Bacillus halophilus .......................................................1 75
Bacillus alcalophilus .....................................................173 Bacillus horikoshii........................................................1 75
Bacillus alginolyticus ....................................................173 Bacillus horti ...............................................................1 75
Bacillus alvei ...............................................................173 Bacillus infernus ..........................................................1 75
Bacillus amyloliquefaciens ............................................173 Bacillus insolitus ..........................................................1 75
Bacillus amylolyticus ....................................................173 Bacillus jeotgali ...........................................................1 75
Bacillus aneurinolyticus ................................................173 Bacillus kaustophilus ....................................................1 75
Bacillus anthracis .........................................................173 Bacillus kobensis ..........................................................1 75
Bacillus arseniciselenatis ..............................................173 Bacillus laevolacticus ...................................................1 75
Bacillus atrophaeus .......................................................173 Bacillus larvae .............................................................1 75
Bacillus azoto? xans ......................................................173 Bacillus laterosporus.....................................................1 75
Bacillus azotoformans ...................................................173 Bacillus lautus .............................................................1 75
Bacillus badius .............................................................173 Bacillus lentimorbus .....................................................1 75
Bacillus barbaricus .......................................................173 Bacillus lentus .............................................................1 75
Bacillus bataviensis ......................................................173 Bacillus licheniformis ...................................................1 75
Bacillus benzoevorans ..................................................173 Bacillus luciferensis ......................................................1 75
Bacillus borstelensis .....................................................173 Bacillus macerans.........................................................1 75
Bacillus brevis .............................................................173 Bacillus macquariensis ..................................................1 75
Bacillus carboniphilus ...................................................173 Bacillus marinus...........................................................1 75
Bacillus centrosporus ....................................................173 Bacillus marismortui.....................................................1 76
Bacillus cereus .............................................................173 Bacillus megaterium .....................................................1 76
Bacillus chitinolyticus ...................................................174 Bacillus methanolicus ...................................................1 76
Bacillus chondroitinus ..................................................174 Bacillus migulanus .......................................................1 76
Bacillus choshinensis ....................................................174 Bacillus mojavensis ......................................................1 76
Bacillus circulans .........................................................174 Bacillus mucilaginosus .................................................1 76
Bacillus clarkii .............................................................174 Bacillus mycoides ........................................................1 76
Bacillus clausii.............................................................174 Bacillus naganoensis.....................................................1 76
Bacillus coagulans ........................................................174 Bacillus nealsonii .........................................................1 76
332
Bacillus neidei ............................................................176 Bacillus vallismortis .....................................................1 78

Bacillus niacini ............................................................176 Bacillus vedderi ...........................................................1 78
Bacillus novalis ............................................................176 Bacillus vireti ..............................................................1 78
Bacillus odysseyi..........................................................176 Bacillus vulcani ...........................................................1 78
Bacillus okuhidensis ....................................................176 Bacillus weihenstephanensis ..........................................1 78
Bacillus oleronius .........................................................176 Bacteria .................................................................... 24
Bacillus pabuli .............................................................176 Bacteriovorax ..............................................................1 34
Bacillus pallidus ...........................................................176 Bacteriovorax starrii .....................................................1 34
Bacillus pantothenticus .................................................176 Bacteriovorax stolpii.....................................................1 34
Bacillus parabrevis .......................................................176 Bacteroidaceae.........................................................3 06
Bacillus pasteurii..........................................................176 Bacteroidales ...........................................................3 06
Bacillus peoriae ...........................................................176 Bacteroides ..................................................................3 06
Bacillus polymyxa ........................................................176 Bacteroides acidifaciens ................................................3 06
Bacillus popilliae..........................................................176 Bacteroides amylophilus ...............................................3 06
Bacillus pseudalcaliphilus .............................................176 Bacteroides asaccharolyticus .........................................3 06
Bacillus pseudo? rmus ...................................................176 Bacteroides bivius ........................................................3 06
Bacillus pseudomycoides ..............................................176 Bacteroides buccae .......................................................3 06
Bacillus psychrodurans .................................................176 Bacteroides buccalis .....................................................3 06
Bacillus psychrophilus ..................................................176 Bacteroides caccae .......................................................3 06
Bacillus psychrosaccharolyticus .....................................177 Bacteroides capillosus ...................................................3 06
Bacillus psychrotolerans ...............................................177 Bacteroides capillus ......................................................3 06
Bacillus pulvifaciens.....................................................177 Bacteroides cellulosolvens ............................................3 06
Bacillus pumilus ..........................................................177 Bacteroides coagulans ...................................................3 06
Bacillus pycnus ...........................................................177 Bacteroides corporis .....................................................3 06
Bacillus reuszeri ...........................................................177 Bacteroides denticola ....................................................3 06
Bacillus salexigens .......................................................177 Bacteroides disiens .......................................................3 06
Bacillus schlegelii ........................................................177 Bacteroides distasonis ...................................................3 06
Bacillus selenitireducens ...............................................177 Bacteroides eggerthii ....................................................3 06
Bacillus shackletonii .....................................................177 Bacteroides endodontalis ...............................................3 07
Bacillus silvestris .........................................................177 Bacteroides forsythus....................................................3 07
Bacillus simplex ...........................................................177 Bacteroides fragilis .......................................................3 06
Bacillus siralis .............................................................177 Bacteroides furcosus .....................................................3 07
Bacillus smithii ............................................................177 Bacteroides galacturonicus ............................................3 07
Bacillus soli .................................................................177 Bacteroides gingivalis ...................................................3 07
Bacillus sonorensis .......................................................177 Bacteroides gracilis ......................................................3 07
Bacillus sphaericus .......................................................177 Bacteroides helcogenes .................................................3 07
Bacillus sporothermodurans ...........................................177 Bacteroides heparinolyticus ...........................................3 07
Bacillus stearothermophilus ...........................................177 Bacteroides hypermegas ................................................3 07
Bacillus subterraneus ...................................................177 Bacteroides intermedius ................................................3 07
Bacillus subtilis subsp. spizizenii ...................................172 Bacteroides levii...........................................................3 07
Bacillus subtilis subsp. subtilis ......................................172 Bacteroides loescheii ....................................................3 07
Bacillus thermantarcticus .............................................177 Bacteroides macacae.....................................................3 07
Bacillus thermoaerophilus .............................................177 Bacteroides melaninogenicus subsp. intermedius .............3 07
Bacillus thermoamylovorans..........................................177 Bacteroides melaninogenicus subsp. macacae .................3 07
Bacillus thermocatenulatus ............................................177 Bacteroides melaninogenicus subsp. melaninogenicus ......3 07
Bacillus thermocloacae .................................................177 Bacteroides merdae ......................................................3 07
Bacillus thermodenitri? cans ..........................................178 Bacteroides microfusus .................................................3 07
Bacillus thermoglucosidasius .........................................178 Bacteroides multiacidus ................................................3 07
Bacillus thermoleovorans ..............................................178 Bacteroides nodosus .....................................................3 07
Bacillus thermoruber ....................................................178 Bacteroides ochraceus ...................................................3 07
Bacillus thermosphaericus .............................................178 Bacteroides oralis .........................................................3 07
Bacillus thiaminolyticus ................................................178 Bacteroides oris ...........................................................3 07
Bacillus thuringiensis ....................................................178 Bacteroides oulorum .....................................................3 07
Bacillus tusciae ............................................................178 Bacteroides ovatus........................................................3 07
Bacillus validus ............................................................178 Bacteroides pectinophilus ..............................................3 07
333
Bacteroides pentosaceus ................................................308 Bdellovibrionales.....................................................1 34

Bacteroides pneumosintes .............................................308 Beggiatoa .................................................................... 86
Bacteroides polypragmatus ............................................308 Beggiatoa alba ............................................................. 86
Bacteroides praeacutus..................................................308 Beijerinckia ................................................................. 57
Bacteroides putredinis ...................................................308 Beijerinckia derxii subsp. derxii..................................... 57
Bacteroides pyogenes ...................................................308 Beijerinckia derxii subsp. venezuelae ............................. 57
Bacteroides ruminicola subsp. brevis ..............................308 Beijerinckia ? uminensis ................................................ 57
Bacteroides ruminicola subsp. ruminicola .......................308 Beijerinckia indica subsp. indica .................................... 57
Bacteroides salivosus ....................................................308 Beijerinckia indica subsp. lacticogenes ........................... 57
Bacteroides splanchnicus ..............................................308 Beijerinckia mobilis ...................................................... 57
Bacteroides stercoris .....................................................308 Beijerinckiaceae ...................................................... 57
Bacteroides succinogenes ..............................................308 Belliella ......................................................................3 18
Bacteroides suis ...........................................................308 Belliella baltica ............................................................3 18
Bacteroides tectus.........................................................308 Bergeyella ...................................................................3 13
Bacteroides termitidis ...................................................308 Bergeyella zoohelcum ...................................................3 13
Bacteroides thetaiotaomicron .........................................308 Betaproteobacteria.................................................. 63
Bacteroides uniformis ...................................................308 Beutenbergia................................................................2 23
Bacteroides ureolyticus .................................................308 Beutenbergia cavernae ..................................................2 23
Bacteroides veroralis ....................................................308 Beutenbergiaceae ....................................................2 23
Bacteroides vulgatus .....................................................308 Bi?dobacteriaceae...................................................2 98
Bacteroides xylanolyticus ..............................................308 Bi?dobacteriales......................................................2 98
Bacteroides zoogleoformans ..........................................308 Bi? dobacterium ...........................................................2 98
Bacteroidetes ...........................................................306 Bi? dobacterium adolescentis .........................................2 99
Balnearium .................................................................. 25 Bi? dobacterium angulatum ...........................................2 99
Balnearium lithotrophicum ............................................ 25 Bi? dobacterium animalis ..............................................2 99
Balneatrix .................................................................... 91 Bi? dobacterium asteroides ............................................2 99
Balneatrix alpica .......................................................... 91 Bi? dobacterium bi? dum ...............................................2 99
Bartonella .................................................................... 54 Bi? dobacterium boum ..................................................2 99
Bartonella alsatica ........................................................ 54 Bi? dobacterium breve...................................................2 99
Bartonella bacilliformis ................................................. 54 Bi? dobacterium catenulatum .........................................2 99
Bartonella birtlesii ........................................................ 54 Bi? dobacterium choerinum ...........................................2 99
Bartonella bovis .......................................................... 55 Bi? dobacterium coryneforme ........................................2 99
Bartonella capreoli ...................................................... 55 Bi? dobacterium cuniculi ...............................................2 99
Bartonella chomelii ...................................................... 55 Bi? dobacterium denticolens ..........................................2 99
Bartonella clarridgeiae .................................................. 55 Bi? dobacterium dentium ...............................................2 99
Bartonella doshiae ........................................................ 55 Bi? dobacterium gallicum ..............................................2 99
Bartonella elizabethae ................................................... 55 Bi? dobacterium gallinarum ...........................................2 99
Bartonella grahamii ...................................................... 55 Bi? dobacterium globosum ............................................2 99
Bartonella henselae ....................................................... 55 Bi? dobacterium indicum ...............................................2 99
Bartonella koehlerae ..................................................... 55 Bi? dobacterium infantis ................................................2 99
Bartonella peromysci .................................................... 55 Bi? dobacterium inopinatum ..........................................2 99
Bartonella quintana ....................................................... 55 Bi? dobacterium lactis ...................................................2 99
Bartonella schoenbuchensis ........................................... 55 Bi? dobacterium longum ................................................2 99
Bartonella talpae .......................................................... 55 Bi? dobacterium magnum ..............................................2 99
Bartonella taylorii......................................................... 55 Bi? dobacterium merycicum ...........................................2 99
Bartonella tribocorum ................................................... 55 Bi? dobacterium minimum .............................................2 99
Bartonella vinsonii subsp. arupensis ............................... 55 Bi? dobacterium pseudocatenulatum ...............................2 99
Bartonella vinsonii subsp. berkhof? i .............................. 55 Bi? dobacterium pseudolongum subsp. globosum ............3 00
Bartonella vinsonii subsp. vinsonii ................................. 55 Bi? dobacterium pseudolongum subsp. pseudolongum ......2 99
Bartonellaceae ......................................................... 54 Bi? dobacterium psychraerophilum .................................3 00
Bdellovibrio .................................................................134 Bi? dobacterium pullorum .............................................3 00
Bdellovibrio bacteriovorus ............................................134 Bi? dobacterium ruminantium ........................................3 00
Bdellovibrio starrii .......................................................134 Bi? dobacterium saeculare .............................................3 00
Bdellovibrio stolpii .......................................................134 Bi? dobacterium scardovii .............................................3 00
Bdellovibrionaceae..................................................134 Bi? dobacterium subtile .................................................3 00
334
Bi? dobacterium suis .....................................................300 Borrelia parkeri ............................................................3 03

Bi? dobacterium thermacidophilum ................................300 Borrelia persica ............................................................3 03
Bi? dobacterium thermophilum ......................................300 Borrelia recurrentis .......................................................3 03
Bilophila .....................................................................129 Borrelia sinica ..............................................................3 03
Bilophila wadsworthia ..................................................129 Borrelia tanukii ............................................................3 03
Blastobacter ................................................................. 58 Borrelia theileri ............................................................3 03
Blastobacter aggregatus ................................................ 58 Borrelia tillae ...............................................................3 03
Blastobacter capsulatus ................................................. 58 Borrelia turdi ...............................................................3 03
Blastobacter denitri? cans .............................................. 58 Borrelia turicatae ..........................................................3 03
Blastobacter henricii ..................................................... 58 Borrelia valaisiana ........................................................3 04
Blastobacter natatorius .................................................. 58 Borrelia venezuelensis ..................................................3 04
Blastochloris ................................................................ 61 Borzia ......................................................................... 31
Blastochloris sulfoviridis ............................................... 61 Borzia sp ..................................................................... 31
Blastochloris viridis ...................................................... 61 Bosea .......................................................................... 59
Blastococcus ................................................................297 Bosea eneae ................................................................. 59
Blastococcus aggregatus ...............................................297 Bosea massiliensis ........................................................ 59
Blastomonas ................................................................ 48 Bosea thiooxidans ........................................................ 59
Blastomonas natatoria ................................................... 48 Bosea vestrisii .............................................................. 59
Blastomonas ursincola .................................................. 48 Brachybacterium ..........................................................2 15
Blattabacteriaceae...................................................316 Brachybacterium alimentarium ......................................2 15
Blattabacterium ............................................................316 Brachybacterium conglomeratum ...................................2 15
Blattabacterium cuenoti ................................................316 Brachybacterium faecium ..............................................2 15
Bogoriella ...................................................................212 Brachybacterium fresconis ............................................2 15
Bogoriella caseilytica....................................................212 Brachybacterium muris .................................................2 15
Bogoriellaceae..........................................................212 Brachybacterium nesterenkovii ......................................2 15
Bordetella .................................................................... 68 Brachybacterium paraconglomeratum .............................2 15
Bordetella avium .......................................................... 68 Brachybacterium rhamnosum ........................................2 15
Bordetella bronchiseptica .............................................. 68 Brachybacterium sacelli ................................................2 15
Bordetella hinzii ........................................................... 68 Brachybacterium tyrofermentans....................................2 15
Bordetella holmesii....................................................... 68 Brachymonas ............................................................... 70
Bordetella parapertussis ................................................ 68 Brachymonas denitri? cans ............................................ 70
Bordetella pertussis ...................................................... 68 Brachyspira .................................................................3 05
Bordetella petrii ........................................................... 68 Brachyspira aalborgi .....................................................3 05
Bordetella trematum ..................................................... 68 Brachyspira alvinipulli ..................................................3 05
Borrelia .......................................................................303 Brachyspira hyodysenteriae ...........................................3 05
Borrelia afzelii .............................................................303 Brachyspira innocens ....................................................3 05
Borrelia anserina ..........................................................303 Brachyspira pilosicoli ...................................................3 05
Borrelia baltazardii .......................................................303 Brackiella .................................................................... 68
Borrelia brasiliensis ......................................................303 Brackiella oedipodis .................................................... 68
Borrelia burgdorferi ......................................................303 Bradyrhizobiaceae .................................................. 58
Borrelia caucasica ........................................................303 Bradyrhizobium ........................................................... 58
Borrelia coriaceae.........................................................303 Bradyrhizobium elkanii................................................. 58
Borrelia crocidurae .......................................................303 Bradyrhizobium japonicum ........................................... 58
Borrelia dugesii ............................................................303 Bradyrhizobium liaoningense ........................................ 58
Borrelia duttonii ...........................................................303 Bradyrhizobium yuanmingense ...................................... 58
Borrelia garinii.............................................................303 Brenneria ....................................................................1 14
Borrelia graingeri .........................................................303 Brenneria alni ..............................................................1 14
Borrelia harveyi ...........................................................303 Brenneria nigri?uens ....................................................1 14
Borrelia hermsii ...........................................................303 Brenneria paradisiaca....................................................1 14
Borrelia hispanica.........................................................303 Brenneria quercina .......................................................1 14
Borrelia japonica ..........................................................303 Brenneria rubrifaciens ...................................................1 14
Borrelia latyschewii......................................................303 Brenneria salicis ...........................................................1 14
Borrelia lusitaniae ........................................................303 Brevibacillus................................................................1 84
Borrelia mazzottii .........................................................303 Brevibacillus agri .........................................................1 84
Borrelia miyamotoi.......................................................303 Brevibacillus borstelensis ..............................................1 84
335
Brevibacillus brevis ......................................................184 Brucella abortus ........................................................... 55

Brevibacillus centrosporus ............................................184 Brucella canis .............................................................. 55
Brevibacillus choshinensis ............................................184 Brucella melitensis ....................................................... 55
Brevibacillus formosus .................................................184 Brucella neotomae ........................................................ 55
Brevibacillus invocatus ................................................184 Brucella ovis ................................................................ 55
Brevibacillus laterosporus .............................................184 Brucella suis ................................................................ 55
Brevibacillus limnophilus..............................................185 Brucellaceae............................................................. 55
Brevibacillus parabrevis ................................................185 Bryantella ....................................................................1 47
Brevibacillus reuszeri ...................................................185 Bryantella formatexigens ..............................................1 47
Brevibacillus thermoruber .............................................185 Buchnera .....................................................................1 14
Brevibacteriaceae....................................................212 Buchnera aphidicola .....................................................1 14
Brevibacterium ............................................................212 Budvicia ......................................................................1 14
Brevibacterium acetylicum ............................................212 Budvicia aquatica .........................................................1 14
Brevibacterium albidum ................................................212 Bulleidia .....................................................................1 72
Brevibacterium ammoniagenes ......................................212 Bulleidia extructa .........................................................1 72
Brevibacterium avium ...................................................212 Burkholderia ................................................................ 63
Brevibacterium casei ....................................................213 Burkholderia ambifaria ................................................. 63
Brevibacterium citreum .................................................213 Burkholderia andropogonis ........................................... 63
Brevibacterium divaricatum ...........................................213 Burkholderia anthina .................................................... 63
Brevibacterium epidermidis ...........................................213 Burkholderia caledonica................................................ 63
Brevibacterium fermentans ............................................213 Burkholderia caribensis................................................. 64
Brevibacterium frigoritolerans .......................................213 Burkholderia caryophylli............................................... 64
Brevibacterium halotolerans ..........................................213 Burkholderia cenocepacia ............................................. 64
Brevibacterium imperiale ..............................................213 Burkholderia cepacia .................................................... 63
Brevibacterium incertum ...............................................213 Burkholderia cocovenenans ........................................... 64
Brevibacterium iodinum ................................................213 Burkholderia fungorum ................................................. 64
Brevibacterium linens ...................................................212 Burkholderia gladioli .................................................... 64
Brevibacterium liquefaciens ..........................................213 Burkholderia glathei ..................................................... 64
Brevibacterium luteum ..................................................213 Burkholderia glumae .................................................... 64
Brevibacterium lyticum .................................................213 Burkholderia graminis .................................................. 64
Brevibacterium mcbrellneri ...........................................213 Burkholderia hospita..................................................... 64
Brevibacterium otitidis..................................................213 Burkholderia kururiensis ............................................... 64
Brevibacterium oxydans ................................................213 Burkholderia mallei ...................................................... 64
Brevibacterium paucivorans ..........................................213 Burkholderia multivorans .............................................. 64
Brevibacterium protophormiae .......................................213 Burkholderia norimbergensis ......................................... 64
Brevibacterium pusillum ...............................................213 Burkholderia phenazinium ............................................ 64
Brevibacterium saperdae ...............................................213 Burkholderia phymatum ................................................ 64
Brevibacterium stationis ................................................213 Burkholderia pickettii ................................................... 64
Brevibacterium testaceum .............................................213 Burkholderia plantarii ................................................... 64
Brevibacterium vitarumen .............................................214 Burkholderia pseudomallei ............................................ 64
Brevinema ...................................................................304 Burkholderia pyrrocinia ................................................ 64
Brevinema andersonii ...................................................304 Burkholderia sacchari ................................................... 64
Brevundimonas ............................................................ 51 Burkholderia solanacearum ........................................... 64
Brevundimonas alba ..................................................... 51 Burkholderia stabilis ..................................................... 65
Brevundimonas aurantiaca ............................................ 51 Burkholderia terricola ................................................... 65
Brevundimonas bacteroides ........................................... 51 Burkholderia thailandensis ............................................ 65
Brevundimonas diminuta .............................................. 51 Burkholderia tuberum ................................................... 65
Brevundimonas intermedia ............................................ 51 Burkholderia ubonensis................................................. 65
Brevundimonas subvibrioides ........................................ 51 Burkholderia vandii ...................................................... 65
Brevundimonas variabilis .............................................. 51 Burkholderia vietnamiensis ........................................... 65
Brevundimonas vesicularis ............................................ 51 Burkholderiaceae .................................................... 63
Brochothrix .................................................................181 Burkholderiales ....................................................... 63
Brochothrix campestris .................................................181 Buttiauxella .................................................................1 14
Brochothrix thermosphacta ............................................181 Buttiauxella agrestis .....................................................1 14
Brucella ...................................................................... 55 Buttiauxella brennerae ..................................................1 14
336
Buttiauxella ferragutiae .................................................115 Caminibacter hydrogeniphilus ......................................1 40

Buttiauxella gaviniae ....................................................115 Caminibacter profundus ................................................1 40
Buttiauxella izardii .......................................................115 Caminicella .................................................................1 47
Buttiauxella noackiae....................................................115 Caminicella sporogenes ................................................1 47
Buttiauxella warmboldiae..............................................115 Campylobacter .............................................................1 37
Butyrivibrio .................................................................149 Campylobacter butzleri .................................................1 37
Butyrivibrio crossotus ...................................................149 Campylobacter cinaedi ..................................................1 37
Butyrivibrio ?brisolvens ...............................................149 Campylobacter coli.......................................................1 37
Butyrivibrio hungatei ....................................................149 Campylobacter concisus ................................................1 37
Byssophaga ................................................................136 Campylobacter cryaerophilus.........................................1 37
Byssophaga cruenta ......................................................136 Campylobacter curvus ..................................................1 37
Campylobacter fennelliae ..............................................1 37
C Campylobacter fetus fetus .............................................1 37
Caedibacter.................................................................. 42 Campylobacter fetus venerealis ......................................1 37
Caedibacter caryophilus ................................................ 42 Campylobacter gracilis .................................................1 37
Caedibacter paraconjugatus ........................................... 42 Campylobacter helveticus .............................................1 37
Caedibacter pseudomutans ............................................ 42 Campylobacter hominis ................................................1 37
Caedibacter taeniospiralis .............................................. 42 Campylobacter hyoilei ..................................................1 37
Caedibacter varicaedens ................................................ 42 Campylobacter hyointestinalis subsp. hyointestinalis .......1 37
Caldanaerobacter ..........................................................162 Campylobacter hyointestinalis subsp. lawsonii ................1 38
Caldanaerobacter subterraneus subsp. paci? cus ...............162 Campylobacter jejuni subsp. doylei ................................1 38
Caldanaerobacter subterraneus subsp. subterraneus ..........162 Campylobacter jejuni subsp. jejuni.................................1 38
Caldanaerobacter subterraneus subsp. tengcongensis ........162 Campylobacter lanienae ................................................1 38
Caldanaerobacter subterraneus subsp. yonseiensis ...........162 Campylobacter lari .......................................................1 38
Calderobacterium ......................................................... 24 Campylobacter mucosalis ..............................................1 38
Calderobacterium hydrogenophilum ............................... 24 Campylobacter mustelae ...............................................1 38
Caldicellulosiruptor ......................................................161 Campylobacter nitro?gilis .............................................1 38
Caldicellulosiruptor kristjanssonii ..................................161 Campylobacter pylori subsp. mustelae ............................1 38
Caldicellulosiruptor lactoaceticus ...................................161 Campylobacter pylori subsp. pylori ................................1 38
Caldicellulosiruptor owensensis .....................................161 Campylobacter rectus ...................................................1 38
Caldicellulosiruptor saccharolyticus ...............................161 Campylobacter showae .................................................1 38
Caldilinea .................................................................... 29 Campylobacter sputorum subsp. bubulus ........................1 38
Caldilinea aerophila ...................................................... 29 Campylobacter sputorum subsp. mucosalis .....................1 38
Caldimonas ................................................................. 70 Campylobacter sputorum subsp. sputorum ......................1 38
Caldimonas manganoxidans ......................................... 70 Campylobacter upsaliensis ............................................1 38
Caldisphaera ................................................................ 11 Campylobacteraceae...............................................1 37
Caldisphaera lagunensis ................................................ 11 Campylobacterales..................................................1 37
Caldisphaeraceae .................................................... 11 Candidatus Liberibacter ................................................ 56
Caldisphaerales ....................................................... 11 Capnocytophaga...........................................................3 13
Caldithrix .................................................................... 30 Capnocytophaga canimorsus ..........................................3 13
Caldithrix abyssi .......................................................... 30 Capnocytophaga cynodegmi ..........................................3 13
Caldivirga.................................................................... 11 Capnocytophaga gingivalis ............................................3 14
Caldivirga maquilingensis ............................................. 11 Capnocytophaga granulosa ............................................3 14
Caloramator .................................................................147 Capnocytophaga haemolytica ........................................3 14
Caloramator coolhaasii .................................................147 Capnocytophaga ochracea .............................................3 13
Caloramator fervidus ....................................................147 Capnocytophaga sputigena ............................................3 14
Caloramator indicus......................................................147 Carbophilus ................................................................. 53
Caloramator proteoclasticus ...........................................147 Carbophilus carboxidus................................................. 53
Caloramator viterbiensis ...............................................147 Carboxydibrachium ......................................................1 63
Caloranaerobacter ........................................................147 Carboxydibrachium paci?cum .......................................1 63
Caloranaerobacter azorensis ..........................................148 Carboxydocella ............................................................1 61
Calothrix ..................................................................... 33 Carboxydocella thermautotrophica .................................1 61
Calymmatobacterium ....................................................115 Carboxydothermus .......................................................1 56
Calymmatobacterium granulomatis ................................115 Carboxydothermus hydrogenoformans ...........................1 56
Caminibacter ..............................................................140 Cardiobacteriaceae ................................................. 85
337
Cardiobacteriales .................................................... 85 Caulobacterales ....................................................... 50

Cardiobacterium ........................................................... 85 Cedecea ......................................................................1 15
Cardiobacterium hominis .............................................. 85 Cedecea davisae ...........................................................1 15
Carnimonas ................................................................. 94 Cedecea lapagei ...........................................................1 15
Carnimonas nigri?cans ................................................. 94 Cedecea neteri .............................................................1 15
Carnobacteriaceae ..................................................196 Cellulomonadaceae .................................................2 14
Carnobacterium ............................................................196 Cellulomonas ...............................................................2 14
Carnobacterium alterfunditum .......................................196 Cellulomonas biazotea ..................................................2 14
Carnobacterium divergens .............................................196 Cellulomonas cartae .....................................................2 14
Carnobacterium funditum ..............................................196 Cellulomonas cellasea...................................................2 14
Carnobacterium gallinarum ...........................................196 Cellulomonas cellulans .................................................2 14
Carnobacterium inhibens ...............................................196 Cellulomonas fermentans ..............................................2 14
Carnobacterium maltaromaticum ...................................196 Cellulomonas ? mi ........................................................2 14
Carnobacterium mobile .................................................196 Cellulomonas ? avigena .................................................2 14
Carnobacterium piscicola ..............................................196 Cellulomonas gelida .....................................................2 14
Carnobacterium viridans ...............................................196 Cellulomonas hominis ..................................................2 14
Caryophanaceae......................................................181 Cellulomonas humilata .................................................2 14
Caryophanon ...............................................................181 Cellulomonas iranensis .................................................2 14
Caryophanon latum ......................................................181 Cellulomonas persica ....................................................2 14
Caryophanon tenue .......................................................181 Cellulomonas turbata ....................................................2 14
Catellatospora ..............................................................242 Cellulomonas uda.........................................................2 14
Catellatospora citrea subsp. citrea ..................................242 Cellulomonas xylanilytica .............................................2 14
Catellatospora citrea subsp. methionotrophica .................242 Cellulophaga................................................................3 14
Catellatospora ferruginea ..............................................242 Cellulophaga algicola ...................................................3 14
Catellatospora koreensis ................................................242 Cellulophaga baltica .....................................................3 14
Catellatospora matsumotoense .......................................242 Cellulophaga fucicola ...................................................3 14
Catellatospora tsunoense ...............................................242 Cellulophaga lytica .......................................................3 14
Catenibacterium ...........................................................149 Cellulophaga paci? ca....................................................3 14
Catenibacterium mitsuokai ............................................149 Cellulosimicrobium ......................................................2 23
Catenococcus ...............................................................111 Cellulosimicrobium cellulans.........................................2 23
Catenococcus thiocycli .................................................111 Cellulosimicrobium variabile ........................................2 23
Catenuloplanes.............................................................242 Cellvibrio ....................................................................1 01
Catenuloplanes atrovinosus ...........................................242 Cellvibrio ? brivorans ....................................................1 01
Catenuloplanes castaneus ..............................................242 Cellvibrio fulvus ..........................................................1 01
Catenuloplanes crispus..................................................242 Cellvibrio gandavensis ..................................................1 01
Catenuloplanes indicus .................................................242 Cellvibrio japonicus ......................................................1 01
Catenuloplanes japonicus ..............................................242 Cellvibrio mixtus subsp. dextranolyticus.........................1 01
Catenuloplanes nepalensis .............................................242 Cellvibrio mixtus subsp. mixtus .....................................1 01
Catenuloplanes niger ....................................................242 Cellvibrio ostraviensis ..................................................1 01
Catonella .....................................................................149 Cellvibrio vulgaris ........................................................1 01
Catonella morbi ...........................................................149 Centipeda ....................................................................1 58
Caulobacter ................................................................. 50 Centipeda periodontii....................................................1 58
Caulobacter bacteroides ................................................ 50 Cetobacterium ..............................................................3 22
Caulobacter crescentus.................................................. 50 Cetobacterium ceti........................................................3 22
Caulobacter fusiformis .................................................. 50 Chamaesiphon ............................................................. 30
Caulobacter halobacteroides .......................................... 50 Chamaesiphon minutus ................................................. 30
Caulobacter henricii...................................................... 50 Chamaesiphon subglobosus ........................................... 30
Caulobacter intermedius ................................................ 50 Chelatobacter ............................................................... 53
Caulobacter leidyi ........................................................ 50 Chelatobacter heintzii ................................................... 53
Caulobacter maris......................................................... 51 Chelatococcus .............................................................. 58
Caulobacter segnis ........................................................ 51 Chelatococcus asaccharovorans ..................................... 58
Caulobacter subvibrioides ............................................. 51 Chitinophaga ...............................................................3 20
Caulobacter variabilis ................................................... 51 Chitinophaga pinensis ...................................................3 20
Caulobacter vibrioides .................................................. 50 Chlamydia ...................................................................3 02
Caulobacteraceae .................................................... 50 Chlamydia muridarum ..................................................3 02
338
Chlamydia pecorum......................................................302 Chromatium................................................................. 79

Chlamydia pneumoniae.................................................302 Chromatium buderi....................................................... 79
Chlamydia psittaci ........................................................302 Chromatium glycolicum ................................................ 79
Chlamydia suis ............................................................302 Chromatium gracile ...................................................... 79
Chlamydia trachomatis .................................................302 Chromatium minus ....................................................... 79
Chlamydiaceae ........................................................302 Chromatium minutissimum ........................................... 79
Chlamydiae..............................................................302 Chromatium okenii ....................................................... 79
Chlamydiales ...........................................................302 Chromatium purpuratum ............................................... 79
Chlamydophila.............................................................302 Chromatium salexigens ................................................. 79
Chlamydophila abortus .................................................302 Chromatium tepidum .................................................... 79
Chlamydophila caviae ...................................................302 Chromatium vinosum ................................................... 79
Chlamydophila felis......................................................302 Chromatium violascens ................................................. 79
Chlamydophila pecorum ...............................................302 Chromatium warmingii ................................................. 79
Chlamydophila pneumoniae ..........................................302 Chromatium weissei ..................................................... 79
Chlamydophila psittaci .................................................302 Chromobacterium ......................................................... 75
Chlorobaculum ............................................................ 34 Chromobacterium ? uviatile ........................................... 75
Chlorobaculum chlorovibrioides .................................... 34 Chromobacterium violaceum ......................................... 75
Chlorobaculum limnaeum ............................................. 34 Chromohalobacter ........................................................ 94
Chlorobaculum parvum ................................................. 34 Chromohalobacter canadensis ........................................ 94
Chlorobaculum tepidum ................................................ 34 Chromohalobacter israelensis ........................................ 94
Chlorobaculum thiosulfatiphilum ................................... 34 Chromohalobacter marismortui ...................................... 94
Chlorobi ................................................................... 33 Chromohalobacter salexigens ........................................ 94
Chlorobia ................................................................. 33 Chroococcidiopsis ........................................................ 31
Chlorobiaceae.......................................................... 33 Chroococcidiopsis thermalis .......................................... 31
Chlorobiales............................................................. 33 Chroococcus ................................................................ 30
Chlorobium ................................................................. 33 Chroococcus sp ............................................................ 30
Chlorobium chlorovibrioides ......................................... 33 Chryseobacterium ........................................................3 14
Chlorobium clathratiforme ............................................ 33 Chryseobacterium balustinum ........................................3 14
Chlorobium limicola ..................................................... 33 Chryseobacterium de?uvii.............................................3 14
Chlorobium luteolum .................................................... 33 Chryseobacterium gleum ...............................................3 14
Chlorobium phaeobacteroides ........................................ 33 Chryseobacterium indologenes ......................................3 14
Chlorobium phaeovibrioides .......................................... 33 Chryseobacterium indoltheticum ....................................3 14
Chlorobium tepidum ..................................................... 33 Chryseobacterium joostei ..............................................3 14
Chlorobium vibrioforme ............................................... 33 Chryseobacterium meningosepticum ..............................3 14
Chloro? exaceae ....................................................... 28 Chryseobacterium miricola ............................................3 14
Chloro? exales .......................................................... 28 Chryseobacterium scophthalmum ...................................3 14
Chloro? exi ............................................................... 28 Chryseomonas .............................................................1 01
Chloro?exus ................................................................ 28 Chryseomonas luteola ...................................................1 02
Chloro?exus aggregans ................................................. 28 Chryseomonas polytricha ..............................................1 01
Chloro?exus aurantiacus ............................................... 28 Chrysiogenaceae...................................................... 28
Chlorogloeopsis ........................................................... 33 Chrysiogenales......................................................... 28
Chlorogloeopsis fritschii ............................................... 33 Chrysiogenes ............................................................... 28
Chloroherpeton ............................................................ 34 Chrysiogenes arsenatis .................................................. 28
Chloroherpeton thalassium ............................................ 34 Chrysiogenetes......................................................... 28
Chloronema ................................................................. 28 Citricoccus ..................................................................2 11
Chloronema giganteum ................................................. 28 Citricoccus muralis .......................................................2 11
Chondromyces .............................................................136 Citrobacter ...................................................................1 15
Chondromyces apiculatus ..............................................136 Citrobacter amalonaticus ...............................................1 15
Chondromyces catenulatus ............................................136 Citrobacter braakii ........................................................1 15
Chondromyces crocatus ................................................136 Citrobacter diversus ......................................................1 15
Chondromyces lanuginosus ...........................................136 Citrobacter farmeri .......................................................1 15
Chondromyces pediculatus ............................................136 Citrobacter freundii ......................................................1 15
Chondromyces robustus ...............................................136 Citrobacter gillenii........................................................1 15
Chromatiaceae......................................................... 79 Citrobacter koseri .........................................................1 15
Chromatiales ........................................................... 79 Citrobacter murliniae ....................................................1 15
339
Citrobacter rodentium ...................................................115 Clostridium cellulosi.....................................................1 42

Citrobacter sedlakii.......................................................115 Clostridium cellulovorans .............................................1 42
Citrobacter werkmanii ..................................................115 Clostridium chartatabidum ............................................1 42
Citrobacter youngae......................................................115 Clostridium chauvoei ....................................................1 42
Clavibacter ..................................................................220 Clostridium clostridioforme ...........................................1 42
Clavibacter iranicum .....................................................221 Clostridium coccoides ...................................................1 42
Clavibacter michiganensis subsp. insidiosus ....................220 Clostridium cochlearium ...............................................1 42
Clavibacter michiganensis subsp. michiganensis .............220 Clostridium cocleatum ..................................................1 42
Clavibacter michiganensis subsp. nebraskensis ................220 Clostridium colicanis ....................................................1 42
Clavibacter michiganensis subsp. sepedonicus ................220 Clostridium colinum .....................................................1 42
Clavibacter michiganensis subsp. tessellarius ..................220 Clostridium collagenovorans .........................................1 42
Clavibacter rathayi .......................................................221 Clostridium cylindrosporum ..........................................1 42
Clavibacter toxicus .......................................................221 Clostridium dif? cile ......................................................1 42
Clavibacter tritici..........................................................221 Clostridium diolis .........................................................1 42
Clavibacter xyli subsp. cynodontis .................................221 Clostridium disporicum.................................................1 42
Clavibacter xyli subsp. xyli ...........................................221 Clostridium durum .......................................................1 42
Clevelandina ................................................................304 Clostridium estertheticum subsp. estertheticum ...............1 42
Clevelandina reticulitermitidis .......................................304 Clostridium estertheticum subsp. laramiense ...................1 42
Clostridia .................................................................140 Clostridium fallax.........................................................1 42
Clostridiaceae..........................................................140 Clostridium felsineum ...................................................1 42
Clostridiales.............................................................140 Clostridium fervidum ....................................................1 42
Clostridium..................................................................140 Clostridium ?metarium .................................................1 42
Clostridium absonum ....................................................141 Clostridium formicaceticum ..........................................1 42
Clostridium aceticum ....................................................141 Clostridium frigidicarnis ...............................................1 42
Clostridium acetireducens .............................................141 Clostridium frigoris ......................................................1 43
Clostridium acetobutylicum ...........................................141 Clostridium gasigenes ...................................................1 43
Clostridium acidilosi.....................................................141 Clostridium ghonii........................................................1 43
Clostridium acidurici ....................................................141 Clostridium glycolicum.................................................1 43
Clostridium aerotolerans ...............................................141 Clostridium grantii .......................................................1 43
Clostridium akagii ........................................................141 Clostridium haemolyticum ............................................1 43
Clostridium aldrichii .....................................................141 Clostridium halophilum ................................................1 43
Clostridium algidicarnis ................................................141 Clostridium hastiforme .................................................1 43
Clostridium algidixylanolyticum ....................................141 Clostridium hathewayi .................................................1 43
Clostridium aminophilum ..............................................141 Clostridium herbivorans ................................................1 43
Clostridium aminovalericum..........................................141 Clostridium hiranonis ...................................................1 43
Clostridium arcticum ....................................................141 Clostridium histolyticum ...............................................1 43
Clostridium argentinense ...............................................141 Clostridium homopropionicum ......................................1 43
Clostridium aurantibutyricum ........................................141 Clostridium hungatei ....................................................1 43
Clostridium baratii........................................................141 Clostridium hydroxybenzoicum .....................................1 43
Clostridium barkeri.......................................................141 Clostridium hylemonae .................................................1 43
Clostridium beijerinckii ................................................141 Clostridium indolis .......................................................1 43
Clostridium bifermentans ..............................................141 Clostridium innocuum ..................................................1 43
Clostridium bolteae ......................................................141 Clostridium intestinale ..................................................1 43
Clostridium botulinum ..................................................141 Clostridium irregulare ...................................................1 43
Clostridium bowmanii ..................................................141 Clostridium isatidis .......................................................1 43
Clostridium bryantii......................................................141 Clostridium josui ..........................................................1 43
Clostridium butyricum ..................................................141 Clostridium kluyveri.....................................................1 43
Clostridium cadaveris ...................................................141 Clostridium lactatifermentans .......................................1 43
Clostridium caminithermale...........................................141 Clostridium lacusfryxellense..........................................1 43
Clostridium carnis ........................................................141 Clostridium laramiense .................................................1 43
Clostridium celatum .....................................................141 Clostridium lentocellum ................................................1 43
Clostridium celerecrescens ............................................142 Clostridium lentoputrescens...........................................1 43
Clostridium cellobioparum ............................................142 Clostridium leptum .......................................................1 43
Clostridium cellulofermentans .......................................142 Clostridium limosum ....................................................1 43
Clostridium cellulolyticum ............................................142 Clostridium litorale.......................................................1 43
340
Clostridium lituseburense ..............................................144 Clostridium sporosphaeroides ........................................1 45

Clostridium ljungdahlii .................................................144 Clostridium stercorarium subsp. leptospartum .................1 46
Clostridium lortetii .......................................................144 Clostridium stercorarium subsp. stercorarium ..................1 46
Clostridium magnum ....................................................144 Clostridium stercorarium subsp. thermolacticum .............1 46
Clostridium malenominatum..........................................144 Clostridium sticklandii ..................................................1 46
Clostridium mangenotii.................................................144 Clostridium subterminale ..............................................1 46
Clostridium mayombei..................................................144 Clostridium symbiosum ................................................1 46
Clostridium methoxybenzovorans ..................................144 Clostridium termitidis ...................................................1 46
Clostridium methylpentosum .........................................144 Clostridium tertium ......................................................1 46
Clostridium neopropionicum .........................................144 Clostridium tetani.........................................................1 46
Clostridium nexile ........................................................144 Clostridium tetanomorphum ..........................................1 46
Clostridium novyi.........................................................144 Clostridium thermaceticum ...........................................1 46
Clostridium oceanicum .................................................144 Clostridium thermautotrophicum ....................................1 46
Clostridium orbiscindens ...............................................144 Clostridium thermoalcaliphilum .....................................1 46
Clostridium oroticum ....................................................144 Clostridium thermobutyricum ........................................1 46
Clostridium oxalicum ...................................................144 Clostridium thermocellum .............................................1 46
Clostridium papyrosolvens ............................................144 Clostridium thermocopriae ............................................1 46
Clostridium paradoxum .................................................144 Clostridium thermohydrosulfuricum ...............................1 46
Clostridium paraperfringens ..........................................144 Clostridium thermolacticum ..........................................1 46
Clostridium paraputri?cum ............................................144 Clostridium thermopalmarium .......................................1 46
Clostridium pascui........................................................144 Clostridium thermopapyrolyticum ..................................1 46
Clostridium pasteurianum .............................................144 Clostridium thermosaccharolyticum ...............................1 46
Clostridium peptidivorans .............................................144 Clostridium thermosuccinogenes....................................1 46
Clostridium perenne .....................................................144 Clostridium thermosulfurogenes ....................................1 46
Clostridium perfringens ................................................144 Clostridium thiosulfatireducens ......................................1 47
Clostridium pfennigii ....................................................144 Clostridium tyrobutyricum ............................................1 47
Clostridium phytofermentans ........................................144 Clostridium uliginosum.................................................1 47
Clostridium piliforme ...................................................144 Clostridium ultunense ...................................................1 47
Clostridium polysaccharolyticum ...................................144 Clostridium villosum ....................................................1 47
Clostridium populeti .....................................................145 Clostridium vincentii ....................................................1 47
Clostridium propionicum ..............................................145 Clostridium viride ........................................................1 47
Clostridium proteoclasticum ..........................................145 Clostridium xylanolyticum ............................................1 47
Clostridium proteolyticum .............................................145 Clostridium xylanovorans .............................................1 47
Clostridium psychrophilum ...........................................145 Cobetia ....................................................................... 94
Clostridium puniceum ...................................................145 Cobetia marina............................................................. 94
Clostridium purinilyticum .............................................145 Coenonia .....................................................................3 14
Clostridium putrefaciens ...............................................145 Coenonia anatina ..........................................................3 14
Clostridium putri?cum ..................................................145 Collinsella ...................................................................2 06
Clostridium quercicolum ...............................................145 Collinsella aerofaciens ..................................................2 06
Clostridium quinii ........................................................145 Collinsella intestinalis ...................................................2 06
Clostridium ramosum ...................................................145 Collinsella stercoris ......................................................2 06
Clostridium rectum .......................................................145 Colwellia.....................................................................1 05
Clostridium roseum ......................................................145 Colwellia demingiae .....................................................1 05
Clostridium saccharobutylicum ......................................145 Colwellia hadaliensis ....................................................1 05
Clostridium saccharolyticum .........................................145 Colwellia hornerae .......................................................1 05
Clostridium saccharoperbutylacetonicum ........................145 Colwellia maris ............................................................1 05
Clostridium sardiniense.................................................145 Colwellia psychrerythrea ...............................................1 05
Clostridium sartagoforme ..............................................145 Colwellia psychrotropica ...............................................1 05
Clostridium scatologenes ..............................................145 Colwellia rossensis .......................................................1 05
Clostridium scindens ....................................................145 Comamonadaceae ................................................... 69
Clostridium septicum ....................................................145 Comamonas ................................................................. 69
Clostridium sordellii .....................................................145 Comamonas acidovorans ............................................... 69
Clostridium sphenoides .................................................145 Comamonas aquatica .................................................... 69
Clostridium spiroforme .................................................145 Comamonas denitri?cans .............................................. 69
Clostridium sporogenes .................................................145 Comamonas kerstersii ................................................... 69
341
Comamonas koreensis .................................................. 69 Corynebacterium fascians .............................................2 25

Comamonas nitrativorans .............................................. 69 Corynebacterium felinum ..............................................2 25
Comamonas terrigena ................................................... 69 Corynebacterium ?accumfaciens subsp. betae .................2 25
Comamonas testosteroni ............................................... 69 Corynebacterium ?accumfaciens subsp. ? accumfaciens ...2 25
Conexibacter ................................................................205 Corynebacterium ?accumfaciens subsp. oortii .................2 25
Conexibacter woesei .....................................................205 Corynebacterium ?accumfaciens subsp. poinsettiae .........2 25
Coprobacillus ...............................................................148 Corynebacterium ?avescens ..........................................2 25
Coprobacillus cateniformis ............................................148 Corynebacterium freneyi ...............................................2 25
Coprococcus ................................................................149 Corynebacterium glaucum .............................................2 25
Coprococcus catus ........................................................149 Corynebacterium glucuronolyticum ................................2 25
Coprococcus comes ......................................................149 Corynebacterium glutamicum ........................................2 25
Coprococcus eutactus ...................................................149 Corynebacterium hoagii ................................................2 26
Coprothermobacter .......................................................163 Corynebacterium ilicis ..................................................2 26
Coprothermobacter platensis..........................................163 Corynebacterium imitans ..............................................2 26
Coprothermobacter proteolyticus ...................................163 Corynebacterium insidiosum .........................................2 26
Corallococcus .............................................................135 Corynebacterium iranicum ............................................2 26
Corallococcus coralloides ..............................................135 Corynebacterium jeikeium ............................................2 26
Corallococcus exiguus ..................................................135 Corynebacterium kroppenstedtii.....................................2 26
Corallococcus macrosporus ...........................................135 Corynebacterium kutscheri ............................................2 26
Coriobacteriaceae ...................................................205 Corynebacterium lilium ................................................2 26
Coriobacteriales ......................................................205 Corynebacterium lipophilo?avum ..................................2 26
Coriobacteridae.......................................................205 Corynebacterium macginleyi .........................................2 26
Coriobacterineae.....................................................205 Corynebacterium mastitidis ...........................................2 26
Coriobacterium ............................................................205 Corynebacterium matruchotii.........................................2 26
Coriobacterium glomerans ............................................205 Corynebacterium michiganense subsp. insidiosum ...........2 26
Corynebacteriaceae.................................................224 Corynebacterium michiganense subsp. michiganense .......2 26
Corynebacterineae..................................................224 Corynebacterium michiganense subsp. nebraskense .........2 26
Corynebacterium ..........................................................224 Corynebacterium michiganense subsp. sepedonicum........2 26
Corynebacterium accolens .............................................224 Corynebacterium michiganense subsp. tessellarius...........2 27
Corynebacterium afermentans subsp. afermentans ...........224 Corynebacterium minutissimum.....................................2 27
Corynebacterium afermentans subsp. lipophilum .............224 Corynebacterium mooreparkense ...................................2 27
Corynebacterium ammoniagenes ....................................224 Corynebacterium mucifaciens ........................................2 27
Corynebacterium amycolatum .......................................224 Corynebacterium mycetoides .........................................2 27
Corynebacterium appendicis .........................................224 Corynebacterium nebraskense........................................2 27
Corynebacterium aquilae ...............................................224 Corynebacterium nigricans ............................................2 27
Corynebacterium argentoratense ....................................224 Corynebacterium oortii .................................................2 27
Corynebacterium atypicum ............................................224 Corynebacterium paurometabolum .................................2 27
Corynebacterium aurimucosum .....................................224 Corynebacterium phocae ...............................................2 27
Corynebacterium auris ..................................................224 Corynebacterium pilosum .............................................2 27
Corynebacterium auriscanis ...........................................224 Corynebacterium poinsettiae..........................................2 27
Corynebacterium betae .................................................224 Corynebacterium propinquum........................................2 27
Corynebacterium beticola..............................................224 Corynebacterium pseudodiphtheriticum ..........................2 27
Corynebacterium bovis .................................................224 Corynebacterium pseudotuberculosis ..............................2 27
Corynebacterium callunae .............................................224 Corynebacterium pyogenes ...........................................2 27
Corynebacterium camporealensis ...................................224 Corynebacterium rathayi ...............................................2 27
Corynebacterium capitovis ............................................224 Corynebacterium renale ................................................2 28
Corynebacterium casei ..................................................225 Corynebacterium riegelii ...............................................2 28
Corynebacterium confusum ...........................................225 Corynebacterium seminale ............................................2 28
Corynebacterium coyleae ..............................................225 Corynebacterium sepedonicum ......................................2 28
Corynebacterium cystitidis ............................................225 Corynebacterium simulans ............................................2 28
Corynebacterium diphtheriae .........................................224 Corynebacterium singulare ............................................2 28
Corynebacterium durum ................................................225 Corynebacterium sphenisci............................................2 28
Corynebacterium ef?ciens .............................................225 Corynebacterium spheniscorum .....................................2 28
Corynebacterium equi ...................................................225 Corynebacterium striatum .............................................2 28
Corynebacterium falsenii ..............................................225 Corynebacterium suicordis ............................................2 28
342
Corynebacterium sundsvallense .....................................228 Cyanobacterium ........................................................... 30

Corynebacterium terpenotabidum ...................................228 Cyanobacterium sp ....................................................... 30
Corynebacterium testudinoris ........................................228 Cyanobium .................................................................. 30
Corynebacterium thomssenii..........................................228 Cyanobium gracile ....................................................... 30
Corynebacterium tritici .................................................228 Cyanocystis ................................................................. 31
Corynebacterium ulcerans .............................................228 Cyanocystis sp ............................................................. 31
Corynebacterium urealyticum ........................................228 Cyanospira .................................................................. 32
Corynebacterium variabile ............................................228 Cyanospira sp .............................................................. 32
Corynebacterium vitaeruminis .......................................228 Cyanothece .................................................................. 30
Corynebacterium xerosis ...............................................228 Cyanothece sp .............................................................. 30
Couchioplanes .............................................................242 Cyclobacterium ............................................................3 18
Couchioplanes caeruleus subsp. azureus .........................242 Cyclobacterium marinum ..............................................3 18
Couchioplanes caeruleus subsp. caeruleus .......................242 Cycloclasticus .............................................................. 86
Cowdria ...................................................................... 41 Cycloclasticus pugetii ................................................... 86
Cowdria ruminantium ................................................... 41 Cylindrospermopsis ...................................................... 32
Coxiella ...................................................................... 89 Cylindrospermopsis raciborskii ...................................... 32
Coxiella burnetii........................................................... 89 Cylindrospermum......................................................... 32
Coxiellaceae ............................................................. 89 Cylindrospermum majus ............................................... 32
Craurococcus ............................................................... 38 Cylindrospermum stagnale ............................................ 32
Craurococcus roseus ..................................................... 38 Cystobacter ..................................................................1 34
Crenarchaeota ......................................................... 11 Cystobacter armeniaca ..................................................1 34
Crenothrix ...................................................................320 Cystobacter badius .......................................................1 34
Crenothrix polyspora ....................................................320 Cystobacter disciformis.................................................1 34
Crenotrichaceae ......................................................320 Cystobacter ferrugineus ................................................1 34
Crinalium .................................................................... 31 Cystobacter fuscus........................................................1 34
Crinalium epipsammum ................................................ 31 Cystobacter gracilis .....................................................1 34
Cristispira ....................................................................304 Cystobacter miniatus ....................................................1 34
Cristispira pectinis ........................................................304 Cystobacter minor ........................................................1 34
Croceibacter ................................................................314 Cystobacter velatus .......................................................1 34
Croceibacter atlanticus ..................................................314 Cystobacter violaceus ...................................................1 34
Crossiella ....................................................................248 Cystobacteraceae.....................................................1 34
Crossiella cryophila ......................................................248 Cystobacterineae.....................................................1 34
Crossiella equi .............................................................248 Cytophaga ...................................................................3 18
Cryobacterium .............................................................221 Cytophaga agarovorans .................................................3 18
Cryobacterium psychrophilum .......................................221 Cytophaga aprica..........................................................3 18
Cryptobacterium ..........................................................206 Cytophaga aquatilis ......................................................3 18
Cryptobacterium curtum ...............................................206 Cytophaga arvensicola ..................................................3 18
Cryptosporangium ........................................................298 Cytophaga aurantiaca....................................................3 18
Cryptosporangium arvum ..............................................298 Cytophaga columnaris ..................................................3 18
Cryptosporangium aurantiacum .....................................298 Cytophaga dif?uens ......................................................3 18
Cryptosporangium japonicum ........................................298 Cytophaga fermentans ..................................................3 18
Cryptosporangium minutisporangium .............................298 Cytophaga ?evensis ......................................................3 18
Cupriavidus ................................................................. 65 Cytophaga heparina ......................................................3 18
Cupriavidus necator ...................................................... 65 Cytophaga hutchinsonii.................................................3 18
Curtobacterium ............................................................221 Cytophaga johnsonae ....................................................3 18
Curtobacterium albidum ................................................221 Cytophaga latercula ......................................................3 18
Curtobacterium citreum ................................................221 Cytophaga lytica ..........................................................3 18
Curtobacterium ?accumfaciens ......................................221 Cytophaga marina ........................................................3 18
Curtobacterium herbarum ..............................................221 Cytophaga marino?ava .................................................3 18
Curtobacterium luteum .................................................221 Cytophaga pectinovora .................................................3 18
Curtobacterium plantarum .............................................221 Cytophaga psychrophila ................................................3 18
Curtobacterium pusillum ...............................................221 Cytophaga saccharophila ...............................................3 18
Curtobacterium saperdae ...............................................221 Cytophaga salmonicolor ................................................3 18
Curtobacterium testaceum .............................................222 Cytophaga succinicans ..................................................3 18
Cyanobacteria ......................................................... 30 Cytophaga uliginosa .....................................................3 19
343
Cytophaga xylanolytica.................................................319 Demetria terragena .......................................................2 16

Dendrosporobacter .......................................................1 58
D Dendrosporobacter quercicolus ......................................1 58
Dactylococcopsis ......................................................... 30 Denitrobacterium .........................................................2 06
Dactylococcopsis (Myxobaktron) salina.......................... 30 Denitrobacterium detoxi?cans .......................................2 06
Dactylosporangium ......................................................243 Denitrovibrio ............................................................... 30
Dactylosporangium aurantiacum ....................................243 Denitrovibrio acetiphilus ............................................... 30
Dactylosporangium fulvum ...........................................243 Dermabacter ................................................................2 15
Dactylosporangium matsuzakiense .................................243 Dermabacter hominis ....................................................2 15
Dactylosporangium roseum ...........................................243 Dermabacteraceae...................................................2 15
Dactylosporangium thailandense ....................................243 Dermacoccaceae ......................................................2 15
Dactylosporangium vinaceum ........................................243 Dermacoccus ...............................................................2 15
Dechloromonas ............................................................ 78 Dermacoccus nishinomiyaensis ......................................2 16
Dechloromonas agitata.................................................. 78 Dermatophilaceae ...................................................2 15
Dechlorosoma .............................................................. 78 Dermatophilus .............................................................2 15
Dechlorosoma suillum .................................................. 78 Dermatophilus chelonae ................................................2 15
Deferribacter ................................................................ 30 Dermatophilus congolensis ............................................2 15
Deferribacter desulfuricans ............................................ 30 Dermocarpella ............................................................. 31
Deferribacter thermophilus ............................................ 30 Dermocarpella incrassata .............................................. 31
Deferribacteraceae.................................................. 29 Derxia ......................................................................... 68
Deferribacterales..................................................... 29 Derxia gummosa .......................................................... 68
Deferribacteres ........................................................ 29 Desemzia ....................................................................1 96
De? uvibacter ............................................................... 56 Desemzia incerta ..........................................................1 96
De? uvibacter lusatiensis ............................................... 56 Desulfacinum ...............................................................1 33
Dehalobacter ................................................................156 Desulfacinum hydrothermale .........................................1 33
Dehalobacter restrictus..................................................156 Desulfacinum infernum .................................................1 33
Dehalospirillum ...........................................................138 Desulfarcales............................................................1 32
Dehalospirillum multivorans..........................................138 Desulfarculaceae .....................................................1 32
Deinococcaceae........................................................ 27 Desulfarculus ...............................................................1 32
Deinococcales........................................................... 27 Desulfarculus baarsii ....................................................1 32
Deinococci ................................................................ 27 Desulfatibacillum .........................................................1 30
Deinococcus ................................................................ 27 Desulfatibacillum aliphaticivorans .................................1 30
Deinococcus erythromyxa ............................................. 27 Desul?tobacterium .......................................................1 56
Deinococcus geothermalis ............................................. 27 Desul?tobacterium chlororespirans ................................1 56
Deinococcus grandis ..................................................... 27 Desul?tobacterium dehalogenans ...................................1 56
Deinococcus indicus ..................................................... 27 Desul?tobacterium frappieri ..........................................1 56
Deinococcus murrayi .................................................... 27 Desul?tobacterium hafniense.........................................1 56
Deinococcus proteolyticus ............................................. 27 Desul?tobacterium metallireducens ................................1 56
Deinococcus radiodurans .............................................. 27 Desulfobacca ...............................................................1 34
Deinococcus radiophilus ............................................... 27 Desulfobacca acetoxidans .............................................1 34
Deinococcus radiopugnans ............................................ 27 Desulfobacter ...............................................................1 30
Deinococcus-Thermus............................................. 27 Desulfobacter curvatus ..................................................1 30
Deleya ........................................................................ 94 Desulfobacter giganteus ................................................1 30
Deleya aesta ................................................................ 94 Desulfobacter halotolerans ............................................1 30
Deleya aquamarina ....................................................... 94 Desulfobacter hydrogenophilus ......................................1 30
Deleya cupida .............................................................. 94 Desulfobacter latus .......................................................1 30
Deleya halophila .......................................................... 94 Desulfobacter postgatei .................................................1 30
Deleya marina.............................................................. 94 Desulfobacter vibrioformis ............................................1 30
Deleya paci?ca ............................................................ 94 Desulfobacteraceae .................................................1 30
Deleya salina ............................................................... 94 Desulfobacterales ....................................................1 30
Deleya venusta ............................................................. 94 Desulfobacterium .........................................................1 30
Delftia......................................................................... 70 Desulfobacterium anilini ...............................................1 30
Delftia acidovorans ....................................................... 70 Desulfobacterium autotrophicum ...................................1 30
Deltaproteobacteria ................................................127 Desulfobacterium catecholicum .....................................1 30
Demetria .....................................................................216 Desulfobacterium cetonicum .........................................1 30
344
Desulfobacterium indolicum ..........................................130 Desulfonatronumaceae ...........................................1 30

Desulfobacterium macestii ............................................130 Desulfonema................................................................1 31
Desulfobacterium niacini ..............................................130 Desulfonema ishimotonii ..............................................1 31
Desulfobacterium phenolicum .......................................130 Desulfonema limicola ...................................................1 31
Desulfobacterium vacuolatum ........................................130 Desulfonema magnum ..................................................1 31
Desulfobacula ..............................................................130 Desulfonispora .............................................................1 56
Desulfobacula phenolica ...............................................130 Desulfonispora thiosulfatigenes .....................................1 56
Desulfobacula toluolica.................................................130 Desulforegula ..............................................................1 31
Desulfobotulus ............................................................130 Desulforegula conservatrix ............................................1 31
Desulfobotulus saprovorans ...........................................130 Desulforhabdus ............................................................1 33
Desulfobulbaceae.....................................................131 Desulforhabdus amnigena .............................................1 33
Desulfobulbus ..............................................................131 Desulforhopalus ...........................................................1 32
Desulfobulbus elongatus ...............................................131 Desulforhopalus singaporensis .......................................1 32
Desulfobulbus mediterraneus .........................................131 Desulforhopalus vacuolatus ...........................................1 32
Desulfobulbus propionicus ............................................131 Desulfosarcina .............................................................1 31
Desulfobulbus rhabdoformis ..........................................131 Desulfosarcina cetonium ...............................................1 31
Desulfocapsa ...............................................................131 Desulfosarcina ovata.....................................................1 31
Desulfocapsa sulfexigens ..............................................131 Desulfosarcina variabilis ...............................................1 31
Desulfocapsa thiozymogenes .........................................131 Desulfospira ................................................................1 31
Desulfocella.................................................................130 Desulfospira joergensenii ..............................................1 31
Desulfocella halophila ..................................................130 Desulfosporosinus ........................................................1 56
Desulfococcus..............................................................130 Desulfosporosinus meridiei ...........................................1 56
Desulfococcus biacutus .................................................131 Desulfosporosinus orientis ............................................1 56
Desulfococcus multivorans ............................................131 Desulfotalea.................................................................1 32
Desulfofaba .................................................................131 Desulfotalea arctica ......................................................1 32
Desulfofaba fastidiosa ...................................................131 Desulfotalea psychrophila .............................................1 32
Desulfofaba gelida........................................................131 Desulfothermus ...........................................................1 29
Desulfofaba hansenii ....................................................131 Desulfothermus napthae ................................................1 29
Desulfofrigus ...............................................................131 Desulfotignum .............................................................1 31
Desulfofrigus fragile .....................................................131 Desulfotignum balticum ................................................1 31
Desulfofrigus oceanense ...............................................131 Desulfotignum phosphitoxidans .....................................1 31
Desulfofustis ................................................................131 Desulfotomaculum .......................................................1 56
Desulfofustis glycolicus ................................................132 Desulfotomaculum acetoxidans ......................................1 56
Desulfohalobiaceae..................................................129 Desulfotomaculum aeronauticum ...................................1 56
Desulfohalobium ..........................................................129 Desulfotomaculum alkaliphilum ....................................1 56
Desulfohalobium retbaense ...........................................129 Desulfotomaculum antarctica.........................................1 56
Desulfomicrobiaceae ...............................................129 Desulfotomaculum auripigmentum .................................1 56
Desulfomicrobium ........................................................129 Desulfotomaculum australicum ......................................1 56
Desulfomicrobium apsheronum .....................................129 Desulfotomaculum geothermicum ..................................1 56
Desulfomicrobium baculatum ........................................129 Desulfotomaculum gibsoniae.........................................1 56
Desulfomicrobium escambiense .....................................129 Desulfotomaculum guttoideum ......................................1 56
Desulfomicrobium macestii ...........................................129 Desulfotomaculum halophilum ......................................1 57
Desulfomicrobium norvegicum ......................................129 Desulfotomaculum kuznetsovii ......................................1 57
Desulfomicrobium orale ................................................129 Desulfotomaculum luciae ..............................................1 57
Desulfomonas ..............................................................129 Desulfotomaculum nigri?cans .......................................1 56
Desulfomonas pigra ......................................................129 Desulfotomaculum orientis ............................................1 57
Desulfomonile .............................................................134 Desulfotomaculum putei ...............................................1 57
Desulfomonile limimaris ...............................................134 Desulfotomaculum ruminis ...........................................1 57
Desulfomonile tiedjei....................................................134 Desulfotomaculum sapomandens ...................................1 57
Desulfomusa ................................................................131 Desulfotomaculum thermoacetoxidans ...........................1 57
Desulfomusa hansenii ...................................................131 Desulfotomaculum thermobenzoicum subsp.
Desulfonatronovibrio ....................................................129 thermobenzoicum .......................................................1 57
Desulfonatronovibrio hydrogenovorans ..........................129 Desulfotomaculum thermobenzoicum subsp.
Desulfonatronum ..........................................................130 thermosyntrophicum ...................................................1 57
Desulfonatronum lacustre..............................................130 Desulfotomaculum thermocisternum ..............................1 57
345
Desulfotomaculum thermosapovorans ............................157 Desulfurobacterium ...................................................... 25

Desulfovibrio ...............................................................127 Desulfurobacterium thermolithotrophum......................... 25
Desulfovibrio acrylicus .................................................127 Desulfurococcaceae................................................. 11
Desulfovibrio aespoeensis .............................................128 Desulfurococcales.................................................... 11
Desulfovibrio africanus .................................................128 Desulfurococcus ........................................................... 11
Desulfovibrio alcoholovorans ........................................128 Desulfurococcus amylolyticus ....................................... 11
Desulfovibrio aminophilus ............................................128 Desulfurococcus mobilis ............................................... 11
Desulfovibrio baarsii ....................................................128 Desulfurococcus mucosus ............................................. 11
Desulfovibrio baculatus ................................................128 Desulfuromonaceae.................................................1 32
Desulfovibrio burkinensis .............................................128 Desulfuromonales....................................................1 32
Desulfovibrio carbinolicus ............................................128 Desulfuromonas ...........................................................1 32
Desulfovibrio cuneatus .................................................128 Desulfuromonas acetexigens ..........................................1 32
Desulfovibrio dechloracetivorans ...................................128 Desulfuromonas acetoxidans .........................................1 32
Desulfovibrio desulfuricans subsp. aestuarii ....................127 Desulfuromonas chloroethenica .....................................1 32
Desulfovibrio desulfuricans subsp. desulfuricans .............127 Desulfuromonas palmitatis ............................................1 32
Desulfovibrio fructosovorans .........................................128 Desulfuromonas thiophila .............................................1 32
Desulfovibrio furfuralis .................................................128 Desulfuromusa .............................................................1 32
Desulfovibrio gabonensis ..............................................128 Desulfuromusa bakii.....................................................1 32
Desulfovibrio giganteus ................................................128 Desulfuromusa kysingii ................................................1 32
Desulfovibrio gigas ......................................................128 Desulfuromusa succinoxidans ........................................1 32
Desulfovibrio halophilus ...............................................128 Dethiosulfovibrio .........................................................1 61
Desulfovibrio hydrothermalis ........................................128 Dethiosulfovibrio acidaminovorans ................................1 61
Desulfovibrio indonesiensis ...........................................128 Dethiosulfovibrio marinus .............................................1 61
Desulfovibrio inopinatus ...............................................128 Dethiosulfovibrio peptidovorans ....................................1 61
Desulfovibrio intestinalis ..............................................128 Dethiosulfovibrio russensis ...........................................1 61
Desulfovibrio litoralis ...................................................128 Devosia ....................................................................... 61
Desulfovibrio longreachensis .........................................128 Devosia neptuniae ........................................................ 61
Desulfovibrio longus ....................................................128 Devosia ribo? avina....................................................... 61
Desulfovibrio magneticus .............................................128 Dialister ......................................................................1 58
Desulfovibrio mexicanus ...............................................128 Dialister invisus ...........................................................1 58
Desulfovibrio oxyclinae ................................................128 Dialister pneumosintes ..................................................1 58
Desulfovibrio pigra .......................................................128 Diaphorobacter ............................................................ 70
Desulfovibrio profundus ...............................................128 Diaphorobacter nitroreducens ........................................ 70
Desulfovibrio salexigens ...............................................128 Dichelobacter ............................................................... 85
Desulfovibrio sapovorans ..............................................129 Dichelobacter nodosus .................................................. 85
Desulfovibrio senezii ....................................................129 Dichotomicrobium ....................................................... 61
Desulfovibrio simplex ...................................................129 Dichotomicrobium thermohalophilum ............................ 61
Desulfovibrio sulfodismutans ........................................129 Dictyoglomaceae......................................................3 22
Desulfovibrio termitidis ................................................129 Dictyoglomales.........................................................3 22
Desulfovibrio thermophilus ...........................................129 Dictyoglomi ..............................................................3 22
Desulfovibrio vietnamensis ...........................................129 Dictyoglomus ..............................................................3 22
Desulfovibrio vulgaris subsp. oxamicus ..........................129 Dictyoglomus thermophilum .........................................3 22
Desulfovibrio vulgaris subsp. vulgaris ............................129 Dictyoglomus turgidum ................................................3 22
Desulfovibrio zosterae ..................................................129 Dietzia ........................................................................2 28
Desulfovibrionaceae................................................127 Dietzia maris ...............................................................2 28
Desulfovibrionales...................................................127 Dietzia natronolimnaea .................................................2 29
Desulfovirga ................................................................133 Dietzia psychralcaliphila ..............................................2 29
Desulfovirga adipica .....................................................133 Dietziaceae ...............................................................2 28
Desulfurella .................................................................127 Diplocalyx ...................................................................3 04
Desulfurella acetivorans ................................................127 Diplocalyx calotermitidis ..............................................3 04
Desulfurella kamchatkensis ...........................................127 Dolosicoccus ...............................................................1 95
Desulfurella multipotens ...............................................127 Dolosicoccus paucivorans .............................................1 95
Desulfurella propionica .................................................127 Dolosigranulum ...........................................................1 96
Desulfurellaceae ......................................................127 Dolosigranulum pigrum ................................................1 96
Desulfurellales .........................................................127 Dorea ..........................................................................1 48
346
Dorea formicigenerans .................................................148 Ensifer terangae ........................................................... 54

Dorea longicatena ........................................................148 Ensifer xinjiangensis..................................................... 54
Duganella .................................................................... 66 Enterobacter ................................................................1 16
Duganella zoogloeoides ................................................ 66 Enterobacter aerogenes .................................................1 16
Dyadobacter ................................................................319 Enterobacter agglomerans .............................................1 16
Dyadobacter fermentans ................................................319 Enterobacter amnigenus ................................................1 16
Dysgonomonas ............................................................309 Enterobacter asburiae....................................................1 16
Dysgonomonas capnocytophagoides ..............................310 Enterobacter cancerogenus ............................................1 16
Dysgonomonas gadei ....................................................310 Enterobacter cloacae .....................................................1 16
Dysgonomonas mossii ..................................................310 Enterobacter cowanii ....................................................1 16
Enterobacter dissolvens.................................................1 16
E Enterobacter gergoviae .................................................1 16
Ectothiorhodospira ....................................................... 81 Enterobacter hormaechei ...............................................1 16
Ectothiorhodospira abdelmalekii .................................... 81 Enterobacter intermedius ...............................................1 16
Ectothiorhodospira haloalkaliphila ................................. 81 Enterobacter kobei........................................................1 16
Ectothiorhodospira halochloris ....................................... 81 Enterobacter nimipressuralis ..........................................1 16
Ectothiorhodospira halophila ......................................... 81 Enterobacter pyrinus .....................................................1 16
Ectothiorhodospira marina ............................................ 82 Enterobacter sakazakii ..................................................1 16
Ectothiorhodospira marismortui ..................................... 82 Enterobacter taylorae ....................................................1 16
Ectothiorhodospira mobilis ............................................ 81 Enterobacteriaceae .................................................1 14
Ectothiorhodospira shaposhnikovii ................................. 82 Enterobacteriales ....................................................1 14
Ectothiorhodospira vacuolata ......................................... 82 Enterococcaceae ......................................................1 97
Ectothiorhodospiraceae.......................................... 81 Enterococcus ...............................................................1 97
Edwardsiella ................................................................115 Enterococcus asini ........................................................1 97
Edwardsiella anguillimortifera .......................................115 Enterococcus avium ......................................................1 97
Edwardsiella hoshinae ..................................................115 Enterococcus canis .......................................................1 97
Edwardsiella ictaluri .....................................................115 Enterococcus casseli?avus ............................................1 97
Edwardsiella tarda ........................................................115 Enterococcus cecorum ..................................................1 97
Eggerthella ..................................................................206 Enterococcus columbae.................................................1 97
Eggerthella lenta ..........................................................206 Enterococcus dispar ......................................................1 97
Ehrlichia ..................................................................... 41 Enterococcus durans .....................................................1 97
Ehrlichia canis ............................................................. 41 Enterococcus faecalis....................................................1 97
Ehrlichia chaffeensis ..................................................... 41 Enterococcus faecium ...................................................1 97
Ehrlichia equi .............................................................. 41 Enterococcus ?avescens ................................................1 97
Ehrlichia ewingii .......................................................... 41 Enterococcus gallinarum ...............................................1 97
Ehrlichia muris ............................................................ 41 Enterococcus gilvus .....................................................1 98
Ehrlichia phagocytophila ............................................... 41 Enterococcus haemoperoxidus .......................................1 98
Ehrlichia risticii ........................................................... 41 Enterococcus hirae .......................................................1 98
Ehrlichia ruminantium .................................................. 41 Enterococcus malodoratus .............................................1 98
Ehrlichia sennetsu ........................................................ 41 Enterococcus moraviensis .............................................1 98
Eikenella ..................................................................... 75 Enterococcus mundtii ...................................................1 98
Eikenella corrodens ...................................................... 75 Enterococcus pallens ...................................................1 98
Empedobacter ..............................................................314 Enterococcus phoeniculicola..........................................1 98
Empedobacter brevis ....................................................314 Enterococcus porcinus ..................................................1 98
Enhydrobacter..............................................................104 Enterococcus pseudoavium ...........................................1 98
Enhydrobacter aerosaccus .............................................104 Enterococcus raf?nosus ................................................1 98
Ensifer ........................................................................ 53 Enterococcus ratti.........................................................1 98
Ensifer adhaerens ......................................................... 53 Enterococcus saccharolyticus.........................................1 98
Ensifer arboris ............................................................. 53 Enterococcus seriolicida................................................1 98
Ensifer fredii................................................................ 53 Enterococcus solitarius .................................................1 98
Ensifer kostiensis ......................................................... 53 Enterococcus sulfureus .................................................1 98
Ensifer kummerowiae ................................................... 53 Enterococcus villorum ..................................................1 98
Ensifer medicae ........................................................... 54 Enterovibrio.................................................................1 11
Ensifer meliloti ............................................................ 54 Enterovibrio norvegicus ................................................1 11
Ensifer saheli ............................................................... 54 Entomoplasma .............................................................1 70
347
Entomoplasma ellychniae..............................................170 Erythrobacter ............................................................... 48

Entomoplasma freundtii ................................................170 Erythrobacter citreus..................................................... 48
Entomoplasma lucivorax ...............................................170 Erythrobacter ? avus ...................................................... 48
Entomoplasma luminosum ............................................170 Erythrobacter litoralis ................................................... 48
Entomoplasma melaleucae ............................................170 Erythrobacter longus..................................................... 48
Entomoplasma somnilux ...............................................170 Erythromicrobium ........................................................ 48
Entomoplasmataceae..............................................170 Erythromicrobium ramosum .......................................... 48
Entomoplasmatales.................................................170 Erythromonas .............................................................. 48
Eperythrozoon .............................................................169 Erythromonas ursincola ................................................ 48
Eperythrozoon coccoides ..............................................169 Escherichia ..................................................................1 14
Eperythrozoon ovis .......................................................169 Escherichia adecarboxylata............................................1 14
Eperythrozoon parvum ..................................................169 Escherichia albertii .......................................................1 14
Eperythrozoon suis .......................................................169 Escherichia blattae........................................................1 14
Eperythrozoon wenyonii ...............................................169 Escherichia coli............................................................1 14
Epsilonproteobacteria.............................................137 Escherichia fergusonii...................................................1 14
Eremococcus ...............................................................195 Escherichia hermannii...................................................1 14
Eremococcus coleocola .................................................195 Escherichia vulneris ......................................................1 14
Erwinia .......................................................................116 Eubacteriaceae ........................................................1 53
Erwinia alni .................................................................116 Eubacterium ................................................................1 53
Erwinia amylovora .......................................................116 Eubacterium acidaminophilum .......................................1 53
Erwinia ananatis ...........................................................116 Eubacterium aerofaciens ...............................................1 53
Erwinia aphidicola........................................................116 Eubacterium aggregans .................................................1 53
Erwinia billingiae .........................................................116 Eubacterium alactolyticum ............................................1 53
Erwinia cacticida..........................................................116 Eubacterium angustum ..................................................1 53
Erwinia cancerogena.....................................................116 Eubacterium barkeri .....................................................1 53
Erwinia carnegieana .....................................................117 Eubacterium biforme ....................................................1 53
Erwinia carotovora subsp. atroseptica .............................117 Eubacterium brachy ......................................................1 53
Erwinia carotovora subsp. betavasculorum......................117 Eubacterium budayi ......................................................1 53
Erwinia carotovora subsp. carotovora .............................117 Eubacterium callanderi .................................................1 53
Erwinia carotovora subsp. odorifera ...............................117 Eubacterium cellulosolvens ...........................................1 53
Erwinia carotovora subsp. wasabiae ...............................117 Eubacterium combesii...................................................1 53
Erwinia chrysanthemi ...................................................117 Eubacterium contortum .................................................1 53
Erwinia cypripedii ........................................................117 Eubacterium coprostanoligenes ......................................1 53
Erwinia dissolvens ........................................................117 Eubacterium cylindroides ..............................................1 53
Erwinia herbicola .........................................................117 Eubacterium desmolans ................................................1 53
Erwinia mallotivora ......................................................117 Eubacterium dolichum ..................................................1 53
Erwinia milletiae ..........................................................117 Eubacterium eligens .....................................................1 53
Erwinia nigri? uens .......................................................117 Eubacterium exiguum ...................................................1 53
Erwinia nimipressuralis .................................................117 Eubacterium ? ssicatena.................................................1 53
Erwinia paradisiaca ......................................................117 Eubacterium formicigenerans ........................................1 53
Erwinia persicina..........................................................117 Eubacterium fossor .......................................................1 53
Erwinia psidii ..............................................................117 Eubacterium hadrum.....................................................1 54
Erwinia pyrifoliae.........................................................117 Eubacterium hallii ........................................................1 54
Erwinia quercina ..........................................................117 Eubacterium in?rmum ..................................................1 54
Erwinia rhapontici ........................................................117 Eubacterium lentum ......................................................1 54
Erwinia rubrifaciens .....................................................117 Eubacterium limosum ...................................................1 53
Erwinia salicis .............................................................118 Eubacterium minutum ...................................................1 54
Erwinia stewartii ..........................................................118 Eubacterium moniliforme ..............................................1 54
Erwinia tracheiphila......................................................118 Eubacterium multiforme ...............................................1 54
Erwinia uredovora ........................................................118 Eubacterium nitritogenes ...............................................1 54
Erysipelothrix ..............................................................172 Eubacterium nodatum ...................................................1 54
Erysipelothrix inopinata ................................................172 Eubacterium oxidoreducens ...........................................1 54
Erysipelothrix rhusiopathiae ..........................................172 Eubacterium plautii ......................................................1 54
Erysipelothrix tonsillarum .............................................172 Eubacterium plexicaudatum ...........................................1 54
Erysipelotrichaceae.................................................172 Eubacterium pyruvativorans ..........................................1 54
348
Eubacterium ramulus ....................................................154 Ferroplasma................................................................. 23

Eubacterium rectale ......................................................154 Ferroplasma acidiphilum ............................................... 23
Eubacterium ruminantium .............................................154 Ferroplasmataceae .................................................. 23
Eubacterium saburreum ................................................154 Fervidobacterium ......................................................... 26
Eubacterium saphenum .................................................154 Fervidobacterium gondwanense ..................................... 26
Eubacterium siraeum ....................................................154 Fervidobacterium islandicum ......................................... 26
Eubacterium suis ..........................................................154 Fervidobacterium nodosum ........................................... 26
Eubacterium sulci .........................................................154 Fervidobacterium pennivorans ....................................... 26
Eubacterium tarantellae.................................................154 Fibrobacter ..................................................................3 05
Eubacterium tardum .....................................................154 Fibrobacter intestinalis ..................................................3 06
Eubacterium tenue ........................................................154 Fibrobacter succinogenes subsp. elongatus ......................3 05
Eubacterium timidum ...................................................154 Fibrobacter succinogenes subsp. succinogenes ................3 05
Eubacterium tortuosum .................................................154 Fibrobacteraceae.....................................................3 05
Eubacterium uniforme ..................................................154 Fibrobacterales........................................................3 05
Eubacterium ventriosum ...............................................154 Fibrobacteres...........................................................3 05
Eubacterium xylanophilum ............................................155 Filibacter .....................................................................1 85
Eubacterium yurii subsp. margaretiae .............................155 Filibacter limicola ........................................................1 85
Eubacterium yurii subsp. schtitka ...................................155 Filifactor .....................................................................1 51
Eubacterium yurii subsp. yurii .......................................155 Filifactor alocis ............................................................1 52
Euryarchaeota ......................................................... 13 Filifactor villosus .........................................................1 52
Ewingella ....................................................................118 Filobacillus ..................................................................1 78
Ewingella americana.....................................................118 Filobacillus milosensis ..................................................1 78
Excellospora ................................................................301 Filomicrobium ............................................................. 61
Excellospora viridilutea ................................................301 Filomicrobium fusiforme .............................................. 61
Exiguobacterium ..........................................................178 Finegoldia ...................................................................1 52
Exiguobacterium acetylicum..........................................178 Finegoldia magna .........................................................1 52
Exiguobacterium antarcticum .......................................178 Firmicutes ................................................................1 40
Exiguobacterium aurantiacum ........................................178 Fischerella ................................................................... 33
Exiguobacterium undae ................................................178 Fischerella thermalis ..................................................... 33
Flammeovirga ..............................................................3 19
F Flammeovirga aprica ....................................................3 19
Facklamia ....................................................................195 Flammeovirgaceae ..................................................3 19
Facklamia hominis .......................................................195 Flavimonas ..................................................................1 02
Facklamia ignava .........................................................195 Flavimonas oryzihabitans ..............................................1 02
Facklamia languida .......................................................195 Flavobacteria...........................................................3 11
Facklamia miroungae....................................................195 Flavobacteriaceae....................................................3 11
Facklamia sourekii .......................................................196 Flavobacteriales.......................................................3 11
Facklamia tabacinasalis .................................................196 Flavobacterium ............................................................3 11
Faecalibacterium ..........................................................148 Flavobacterium acidi?cum ............................................3 11
Faecalibacterium prausnitzii ..........................................148 Flavobacterium acidurans ..............................................3 11
Falcivibrio ...................................................................300 Flavobacterium aquatile ................................................3 11
Falcivibrio grandis ........................................................300 Flavobacterium balustinum ...........................................3 11
Falcivibrio vaginalis .....................................................300 Flavobacterium branchiophilum .....................................3 11
Family 1.1................................................................. 30 Flavobacterium breve ...................................................3 11
Family 2.1................................................................. 31 Flavobacterium capsulatum ...........................................3 11
Family 2.2................................................................. 31 Flavobacterium columnare ............................................3 11
Family 3.1................................................................. 31 Flavobacterium degerlachei ...........................................3 11
Family 4.1................................................................. 32 Flavobacterium devorans ..............................................3 11
Family 4.2................................................................. 33 Flavobacterium esteraromaticum ....................................3 11
Ferribacterium ............................................................. 78 Flavobacterium ferrugineum ..........................................3 11
Ferribacterium limneticum ........................................... 78 Flavobacterium ?evense................................................3 11
Ferrimonas ..................................................................105 Flavobacterium frigidarium ...........................................3 12
Ferrimonas balearica.....................................................105 Flavobacterium frigoris .................................................3 12
Ferroglobus ................................................................. 24 Flavobacterium gillisiae ................................................3 12
Ferroglobus placidus..................................................... 24 Flavobacterium gleum ..................................................3 12
349
Flavobacterium gondwanense ........................................312 Flexibacteraceae......................................................3 17

Flavobacterium halmophilum ........................................312 Flexistipes ................................................................... 30
Flavobacterium heparinum ............................................312 Flexistipes sinusarabici ................................................. 30
Flavobacterium hibernum ..............................................312 Flexithrix ....................................................................3 19
Flavobacterium hydatis .................................................312 Flexithrix dorotheae ......................................................3 19
Flavobacterium indologenes ..........................................312 Formivibrio ................................................................. 75
Flavobacterium indoltheticum ........................................312 Formivibrio citricus ...................................................... 75
Flavobacterium johnsoniae ............................................312 Francisella ................................................................... 86
Flavobacterium limicola ................................................312 Francisella novicida ...................................................... 86
Flavobacterium marinotypicum......................................312 Francisella philomiragia ................................................ 86
Flavobacterium meningosepticum ..................................312 Francisella tularensis subsp. holarctica ........................... 86
Flavobacterium micromati.............................................312 Francisella tularensis subsp. mediasiatica........................ 86
Flavobacterium mizutaii................................................312 Francisella tularensis subsp. novicida ............................. 86
Flavobacterium multivorum ...........................................312 Francisella tularensis subsp. tularensis ............................ 86
Flavobacterium oceanosedimentum ................................312 Francisellaceae ........................................................ 86
Flavobacterium odoratum ..............................................312 Frankia........................................................................2 97
Flavobacterium okeanokoites.........................................312 Frankia alni .................................................................2 97
Flavobacterium omnivorum ...........................................312 Frankiaceae .............................................................2 97
Flavobacterium pectinovorum ........................................312 Frankineae...............................................................2 97
Flavobacterium psychrophilum ......................................312 Frateuria ...................................................................... 84
Flavobacterium resinovorum .........................................313 Frateuria aurantia ......................................................... 84
Flavobacterium saccharophilum .....................................313 Friedmanniella .............................................................2 45
Flavobacterium salegens ...............................................313 Friedmanniella antarctica ..............................................2 45
Flavobacterium scophthalmum ......................................313 Friedmanniella capsulata ...............................................2 45
Flavobacterium spiritivorum ..........................................313 Friedmanniella lacustris ................................................2 45
Flavobacterium succinicans ...........................................313 Friedmanniella spumicola .............................................2 45
Flavobacterium tegetincola ............................................313 Frigoribacterium ..........................................................2 22
Flavobacterium thalpophilum ........................................313 Frigoribacterium faeni ..................................................2 22
Flavobacterium thermophilum .......................................313 Fulvimarina ................................................................. 54
Flavobacterium uliginosum ...........................................313 Fulvimarina pelagi........................................................ 54
Flavobacterium xanthum ...............................................313 Fulvimonas .................................................................. 84
Flavobacterium xinjiangense .........................................313 Fulvimonas soli ........................................................... 84
Flavobacterium yabuuchiae ...........................................313 Fundibacter .................................................................. 92
Flectobacillus ...............................................................319 Fundibacter jadensis ..................................................... 92
Flectobacillus glomeratus ..............................................319 Fusibacter ....................................................................1 52
Flectobacillus major .....................................................319 Fusibacter paucivorans ..................................................1 52
Flectobacillus marinus ..................................................319 Fusobacteria ............................................................3 20
Flexibacter ...................................................................317 Fusobacteriaceae.....................................................3 20
Flexibacter aggregans ...................................................317 Fusobacteriales........................................................3 20
Flexibacter aurantiacus .................................................317 Fusobacterium .............................................................3 20
Flexibacter canadensis ..................................................317 Fusobacterium alocis ....................................................3 20
Flexibacter columnaris ..................................................317 Fusobacterium equinum ................................................3 20
Flexibacter elegans .......................................................317 Fusobacterium gonidiaformans ......................................3 20
Flexibacter ?liformis ....................................................317 Fusobacterium mortiferum ............................................3 20
Flexibacter ?exilis ........................................................317 Fusobacterium naviforme ..............................................3 20
Flexibacter japonensis ...................................................317 Fusobacterium necrogenes ............................................3 20
Flexibacter litoralis .......................................................317 Fusobacterium necrophorum subsp. funduliforme ............3 20
Flexibacter maritimus ...................................................317 Fusobacterium necrophorum subsp. necrophorum ...........3 20
Flexibacter ovolyticus ...................................................317 Fusobacterium nucleatum subsp. animalis .......................3 20
Flexibacter polymorphus ...............................................317 Fusobacterium nucleatum subsp. fusiforme .....................3 20
Flexibacter psychrophilus ..............................................317 Fusobacterium nucleatum subsp. nucleatum ....................3 20
Flexibacter roseolus ......................................................317 Fusobacterium nucleatum subsp. polymorphum ..............3 20
Flexibacter ruber ..........................................................317 Fusobacterium nucleatum subsp. vincentii ......................3 20
Flexibacter sancti .........................................................317 Fusobacterium perfoetens ..............................................3 21
Flexibacter tractuosus ...................................................317 Fusobacterium periodonticum ........................................3 21
350
Fusobacterium plautii ...................................................321 Geobacillus toebii.........................................................1 79

Fusobacterium polysaccharolyticum ...............................321 Geobacillus uzenensis ...................................................1 79
Fusobacterium prausnitzii .............................................321 Geobacter ....................................................................1 33
Fusobacterium pseudonecrophorum ...............................321 Geobacter bremensis.....................................................1 33
Fusobacterium russii .....................................................321 Geobacter chapellei ......................................................1 33
Fusobacterium simiae ...................................................321 Geobacter grbiciae........................................................1 33
Fusobacterium sulci......................................................321 Geobacter hydrogenophilus ...........................................1 33
Fusobacterium ulcerans .................................................321 Geobacter metallireducens ............................................1 33
Fusobacterium varium ..................................................321 Geobacter pelophilus ....................................................1 33
Geobacter sulfurreducens ..............................................1 33
G Geobacteraceae .......................................................1 33
Gallibacterium .............................................................126 Geodermatophilaceae .............................................2 97
Gallibacterium anatis ....................................................126 Geodermatophilus ........................................................2 97
Gallicola .....................................................................152 Geodermatophilus obscurus ...........................................2 97
Gallicola barnesae ........................................................152 Geoglobus .................................................................. 24
Gallionella ................................................................... 77 Geoglobus ahangari ..................................................... 24
Gallionella ferruginea ................................................... 77 Georgenia ...................................................................2 23
Gallionellaceae......................................................... 77 Georgenia muralis .......................................................2 23
Gammaproteobacteria............................................ 79 Geothrix ......................................................................3 06
Gardnerella..................................................................300 Geothrix fermentans .....................................................3 06
Gardnerella vaginalis ....................................................300 Geotoga ...................................................................... 26
Geitleria ...................................................................... 33 Geotoga petraea ........................................................... 26
Geitlerinema ................................................................ 31 Geotoga subterranea ..................................................... 26
Gelidibacter .................................................................314 Geovibrio .................................................................... 30
Gelidibacter algens .......................................................314 Geovibrio ferrireducens ................................................ 30
Gelidibacter mesophilus ...............................................315 Geovibrio thiophilus .................................................... 30
Gelria..........................................................................163 Gillisia ........................................................................3 15
Gelria glutamica ..........................................................163 Gillisia limnaea ............................................................3 15
Gemella ......................................................................189 Glaciecola ...................................................................1 05
Gemella bergeri............................................................189 Glaciecola mesophila ....................................................1 05
Gemella cuniculi ..........................................................189 Glaciecola pallidula ......................................................1 05
Gemella haemolysans ...................................................189 Glaciecola punicea .......................................................1 05
Gemella morbillorum ....................................................189 Globicatella .................................................................1 96
Gemella palaticanis ......................................................189 Globicatella sanguinis ...................................................1 96
Gemella sanguinis ........................................................189 Globicatella sul?difaciens .............................................1 96
Gemmata .....................................................................301 Gloeobacter ................................................................. 30
Gemmata obscuriglobus ................................................301 Gloeobacter violaceus ................................................... 30
Gemmatimonadaceae .............................................322 Gloeocapsa .................................................................. 30
Gemmatimonadales ................................................322 Gloeothece .................................................................. 31
Gemmatimonadetes ................................................322 Gluconacetobacter ........................................................ 38
Gemmatimonas ............................................................323 Gluconacetobacter azotocaptans..................................... 38
Gemmatimonas aurantiaca ............................................323 Gluconacetobacter diazotrophicus .................................. 38
Gemmiger ................................................................... 61 Gluconacetobacter entanii ............................................. 38
Gemmiger formicilis..................................................... 61 Gluconacetobacter europaeus......................................... 38
Gemmobacter .............................................................. 43 Gluconacetobacter hansenii ........................................... 38
Gemmobacter aquatilis ................................................. 43 Gluconacetobacter intermedius ...................................... 38
Geobacillus..................................................................178 Gluconacetobacter johannae .......................................... 38
Geobacillus caldoxylosilyticus .......................................179 Gluconacetobacter liquefaciens ...................................... 38
Geobacillus kaustophilus ...............................................179 Gluconacetobacter oboediens......................................... 39
Geobacillus stearothermophilus .....................................178 Gluconacetobacter xylinus ............................................ 39
Geobacillus subterraneus ...............................................179 Gluconobacter .............................................................. 39
Geobacillus thermocatenulatus .......................................179 Gluconobacter asaii ...................................................... 39
Geobacillus thermodenitri? cans .....................................179 Gluconobacter cerinus .................................................. 39
Geobacillus thermoglucosidasius ...................................179 Gluconobacter frateurii ................................................. 39
Geobacillus thermoleovorans .........................................179 Gluconobacter oxydans subsp. industrius ........................ 39
351
Gluconobacter oxydans subsp. melanogenes ................... 39 Haemophilus paragallinarum .........................................1 26

Gluconobacter oxydans subsp. oxydans .......................... 39 Haemophilus parahaemolyticus ......................................1 26
Gluconobacter oxydans subsp. sphaericus ....................... 39 Haemophilus parain?uenzae ..........................................1 26
Gluconobacter oxydans subsp. suboxydans ..................... 39 Haemophilus paraphrohaemolyticus ...............................1 27
Glycomyces .................................................................298 Haemophilus paraphrophilus .........................................1 27
Glycomyces harbinensis ................................................298 Haemophilus parasuis ...................................................1 27
Glycomyces rutgersensis ...............................................298 Haemophilus piscium ...................................................1 27
Glycomyces tenuis .......................................................298 Haemophilus pleuropneumoniae ....................................1 27
Glycomycetaceae.....................................................298 Haemophilus segnis ......................................................1 27
Glycomycineae.........................................................298 Haemophilus vaginalis ..................................................1 27
Gordonia .....................................................................229 Hafnia .........................................................................1 18
Gordonia aichiensis ......................................................229 Hafnia alvei .................................................................1 18
Gordonia alkanivorans ..................................................229 Hahella ....................................................................... 92
Gordonia amarae ..........................................................229 Hahella chejuensis ........................................................ 92
Gordonia amicalis ........................................................229 Hahellaceae.............................................................. 92
Gordonia bronchialis ....................................................229 Halanaerobacter ...........................................................1 65
Gordonia desulfuricans .................................................229 Halanaerobacter chitinovorans .......................................1 65
Gordonia hirsuta...........................................................229 Halanaerobacter lacunaris .............................................1 65
Gordonia hydrophobica.................................................229 Halanaerobacter salinarius .............................................1 65
Gordonia namibiensis ..................................................229 Halanaerobiaceae....................................................1 64
Gordonia nitida ............................................................229 Halanaerobiales.......................................................1 64
Gordonia polyisoprenivorans .........................................229 Halanaerobium.............................................................1 64
Gordonia rhizosphera....................................................229 Halanaerobium acetethylicum ........................................1 64
Gordonia rubripertincta .................................................229 Halanaerobium alcaliphilum ..........................................1 64
Gordonia sputi .............................................................229 Halanaerobium congolense ............................................1 64
Gordonia terrae ............................................................229 Halanaerobium fermentans ............................................1 64
Gordonia westfalica ......................................................229 Halanaerobium kushneri ...............................................1 64
Gordoniaceae...........................................................229 Halanaerobium lacusrosei .............................................1 64
Gracilibacillus..............................................................179 Halanaerobium praevalens ............................................1 64
Gracilibacillus dipsosauri ..............................................179 Halanaerobium saccharolyticum subsp. saccharolyticum ..1 64
Gracilibacillus halotolerans ...........................................179 Halanaerobium saccharolyticum subsp. senegalense ........1 65
Granulicatella ..............................................................196 Halanaerobium salsuginis ..............................................1 65
Granulicatella adiacens .................................................196 Haliangiaceae...........................................................1 37
Granulicatella balaenopterae..........................................197 Haliangium ..................................................................1 37
Granulicatella elegans ...................................................197 Haliangium ochraceum .................................................1 37
Grimontia ....................................................................111 Haliangium tepidum .....................................................1 37
Grimontia hollisae ........................................................111 Haliscomenobacter .......................................................3 17
Haliscomenobacter hydrossis .........................................3 17
H Haloarcula ................................................................... 20
Haemobartonella ..........................................................169 Haloarcula argentinensis ............................................... 20
Haemobartonella canis ..................................................169 Haloarcula hispanica..................................................... 20
Haemobartonella felis ...................................................169 Haloarcula japonica ...................................................... 20
Haemobartonella muris .................................................169 Haloarcula marismortui................................................. 20
Haemophilus ................................................................126 Haloarcula mukohataei ................................................. 20
Haemophilus actinomycetemcomitans ............................126 Haloarcula quadrata ...................................................... 20
Haemophilus aegyptius .................................................126 Haloarcula vallismortis ................................................. 20
Haemophilus aphrophilus ..............................................126 Halobacillus.................................................................1 79
Haemophilus avium ......................................................126 Halobacillus halophilus .................................................1 79
Haemophilus ducreyi ....................................................126 Halobacillus karajensis .................................................1 79
Haemophilus equigenitalis ............................................126 Halobacillus litoralis .....................................................1 79
Haemophilus felis.........................................................126 Halobacillus salinus ......................................................1 79
Haemophilus haemoglobinophilus..................................126 Halobacillus trueperi.....................................................1 79
Haemophilus haemolyticus ............................................126 Halobacteria ............................................................ 19
Haemophilus in? uenzae ................................................126 Halobacteriaceae..................................................... 19
Haemophilus paracuniculus ...........................................126 Halobacteriales........................................................ 19
352
Halobacterium ............................................................. 19 Halomonas desiderata ................................................... 93

Halobacterium cutirubrum ............................................. 19 Halomonas elongata ..................................................... 92
Halobacterium denitri?cans ........................................... 19 Halomonas eurihalina ................................................... 93
Halobacterium distributum ............................................ 19 Halomonas halmophila ................................................. 93
Halobacterium halobium ............................................... 20 Halomonas halocynthiae ............................................... 93
Halobacterium lacusprofundi ......................................... 20 Halomonas halodenitri?cans .......................................... 93
Halobacterium mediterranei........................................... 20 Halomonas halodurans .................................................. 93
Halobacterium pharaonis ............................................... 20 Halomonas halophila .................................................... 93
Halobacterium saccharovorum ....................................... 20 Halomonas hydrothermalis ............................................ 93
Halobacterium salinarum .............................................. 19 Halomonas israelensis ................................................... 93
Halobacterium sodomense ............................................. 20 Halomonas magadiensis ................................................ 93
Halobacterium trapanicum ............................................ 20 Halomonas marina........................................................ 93
Halobacterium vallismortis ............................................ 20 Halomonas maris?avi ................................................... 93
Halobacterium volcanii ................................................. 20 Halomonas maura......................................................... 93
Halobacteroidaceae.................................................165 Halomonas meridiana ................................................... 93
Halobacteroides ...........................................................165 Halomonas muralis ....................................................... 93
Halobacteroides acetethylicus ........................................165 Halomonas neptunia ..................................................... 93
Halobacteroides elegans ................................................165 Halomonas paci? ca ...................................................... 93
Halobacteroides halobius ..............................................165 Halomonas pantelleriensis ............................................. 93
Halobacteroides lacunaris ..............................................165 Halomonas salina ......................................................... 93
Halobaculum ............................................................... 20 Halomonas subglaciescola............................................. 93
Halobaculum gomorrense.............................................. 20 Halomonas sul? daeris ................................................... 93
Halobiforma ................................................................ 20 Halomonas variabilis .................................................... 94
Halobiforma haloterrestris ............................................. 20 Halomonas venusta....................................................... 94
Halobiforma nitratireducens .......................................... 20 Halonatronum ..............................................................1 65
Halocella .....................................................................165 Halonatronum saccharophilum .......................................1 65
Halocella cellulosilytica ................................................165 Halorhabdus ................................................................ 21
Halochromatium .......................................................... 79 Halorhabdus utahensis .................................................. 21
Halochromatium glycolicum.......................................... 80 Halorhodospira ............................................................ 82
Halochromatium salexigens ........................................... 79 Halorhodospira abdelmalekii ......................................... 82
Halococcus .................................................................. 20 Halorhodospira halochloris ............................................ 82
Halococcus dombrowskii .............................................. 20 Halorhodospira halophila .............................................. 82
Halococcus morrhuae ................................................... 20 Halorhodospira neutrophila ........................................... 82
Halococcus saccharolyticus ........................................... 20 Halorubrum ................................................................. 21
Halococcus salifodinae ................................................. 20 Halorubrum coriense .................................................... 21
Halococcus turkmenicus ............................................... 20 Halorubrum distributum ................................................ 21
Haloferax .................................................................... 21 Halorubrum lacusprofundi............................................. 21
Haloferax alexandrinus ................................................ 21 Halorubrum saccharovorum ........................................... 21
Haloferax denitri?cans .................................................. 21 Halorubrum sodomense ................................................ 21
Haloferax gibbonsii ...................................................... 21 Halorubrum tebenquichense ......................................... 21
Haloferax lucentense .................................................... 21 Halorubrum terrestre..................................................... 21
Haloferax mediterranei ................................................. 21 Halorubrum trapanicum ................................................ 21
Haloferax volcanii ........................................................ 21 Halorubrum vacuolatum ................................................ 21
Halogeometricum ......................................................... 21 Halosimplex ................................................................ 21
Halogeometricum borinquense ....................................... 21 Halosimplex carlsbadense ............................................. 21
Halomicrobium ............................................................ 21 Halospirulina ............................................................... 32
Halomicrobium mukohataei........................................... 21 Halospirulina tapeticola ................................................ 32
Halomonadaceae ..................................................... 92 Haloterrigena ............................................................... 21
Halomonas .................................................................. 92 Haloterrigena thermotolerans ......................................... 22
Halomonas alimentaria ................................................. 92 Haloterrigena turkmenica .............................................. 22
Halomonas aquamarina ................................................. 93 Halothermothrix ...........................................................1 65
Halomonas axialensis ................................................... 93 Halothermothrix orenii ..................................................1 65
Halomonas campisalis .................................................. 93 Halothiobacillaceae................................................. 83
Halomonas canadensis .................................................. 93 Halothiobacillus ........................................................... 83
Halomonas cupida ........................................................ 93 Halothiobacillus halophilus ........................................... 83
353
Halothiobacillus hydrothermalis..................................... 83 Herbidospora ...............................................................2 88

Halothiobacillus kellyi .................................................. 83 Herbidospora cretacea ...................................................2 88
Halothiobacillus neapolitanus ........................................ 83 Herpetosiphon .............................................................. 28
Haploangium ...............................................................136 Herpetosiphon aurantiacus ............................................ 28
Haploangium minus ..................................................136 Herpetosiphon cohaerens .............................................. 28
Haploangium rugiseptum ...........................................136 Herpetosiphon geysericola ............................................ 29
Helcococcus ................................................................152 Herpetosiphon nigricans ................................................ 29
Helcococcus kunzii.......................................................152 Herpetosiphon persicus ................................................. 29
Helcococcus ovis..........................................................152 Herpetosiphonaceae................................................ 28
Helicobacter ................................................................139 Herpetosiphonales................................................... 28
Helicobacter acinonychis ..............................................139 Hespellia .....................................................................1 48
Helicobacter aurati ......................................................139 Hespellia porcina..........................................................1 48
Helicobacter bilis .........................................................139 Hespellia stercorisuis ....................................................1 48
Helicobacter bizzozeronii ..............................................139 Hippea ........................................................................1 27
Helicobacter canadensis ...............................................139 Hippea maritima...........................................................1 27
Helicobacter canis ........................................................139 Hirschia ...................................................................... 43
Helicobacter cholecystus ...............................................139 Hirschia baltica ............................................................ 43
Helicobacter cinaedi .....................................................139 Holdemania .................................................................1 72
Helicobacter felis .........................................................139 Holdemania ? liformis ...................................................1 72
Helicobacter fennelliae .................................................139 Hollandina ...................................................................3 04
Helicobacter ganmani ...................................................139 Hollandina pterotermitidis .............................................3 04
Helicobacter hepaticus ..................................................139 Holophaga ...................................................................3 06
Helicobacter mesocricetorum.........................................139 Holophaga foetida ........................................................3 06
Helicobacter muridarum ................................................139 Holospora .................................................................... 42
Helicobacter mustelae ...................................................139 Holospora caryophila .................................................... 42
Helicobacter nemestrinae ..............................................140 Holospora elegans ........................................................ 42
Helicobacter pametensis ................................................140 Holospora obtusa.......................................................... 42
Helicobacter pullorum ..................................................140 Holospora undulata....................................................... 42
Helicobacter pylori .......................................................139 Holosporaceae ......................................................... 42
Helicobacter rodentium .................................................140 Hongia ........................................................................2 45
Helicobacter salomonis .................................................140 Hongia koreensis ..........................................................2 45
Helicobacter trogontum .................................................140 Hongiella ....................................................................3 19
Helicobacter typhlonius ................................................140 Hongiella halophila ......................................................3 19
Helicobacteraceae ...................................................139 Hongiella mannitolivorans ............................................3 19
Heliobacillus ................................................................157 Hongiella ornithinivorans ..............................................3 19
Heliobacillus mobilis ....................................................157 Hyalangium ................................................................1 35
Heliobacteriaceae ....................................................157 Hyalangium minutum ...................................................1 35
Heliobacterium ............................................................157 Hydrogenimonaceae ...............................................1 40
Heliobacterium chlorum ................................................157 Hydrogenimonas ..........................................................1 40
Heliobacterium gestii ....................................................157 Hydrogenimonas thermophila ........................................1 40
Heliobacterium modesticaldum ......................................157 Hydrogenobacter .......................................................... 24
Heliobacterium sul? dophilum ........................................157 Hydrogenobacter acidophilus......................................... 24
Heliobacterium undosum ..............................................157 Hydrogenobacter hydrogenophilus ................................. 24
Heliophilum.................................................................158 Hydrogenobacter subterraneus ....................................... 25
Heliophilum fasciatum ..................................................158 Hydrogenobacter thermophilus ...................................... 24
Heliorestis ...................................................................158 Hydrogenobaculum ...................................................... 24
Heliorestis baculata ......................................................158 Hydrogenobaculum acidophilum .................................... 24
Heliorestis daurensis .....................................................158 Hydrogenophaga .......................................................... 70
Heliothrix .................................................................... 28 Hydrogenophaga ?ava .................................................. 70
Heliothrix oregonensis .................................................. 28 Hydrogenophaga intermedia .......................................... 70
Herbaspirillum ............................................................. 66 Hydrogenophaga palleronii ........................................... 70
Herbaspirillum frisingense ............................................ 66 Hydrogenophaga pseudo?ava ........................................ 70
Herbaspirillum lusitanum .............................................. 66 Hydrogenophaga taeniospiralis ...................................... 70
Herbaspirillum rubrisubalbicans..................................... 67 Hydrogenophilaceae ............................................... 72
Herbaspirillum seropedicae ........................................... 66 Hydrogenophilales .................................................. 72
354
Hydrogenophilus .......................................................... 72 Ilyobacter dela? eldii .....................................................3 21

Hydrogenophilus hirschii .............................................. 72 Ilyobacter insuetus........................................................3 21
Hydrogenophilus thermoluteolus .................................... 72 Ilyobacter polytropus ....................................................3 21
Hydrogenothermus ....................................................... 25 Ilyobacter tartaricus ......................................................3 21
Hydrogenothermus marinus ........................................... 25 Incertae sedis ........................................................... 71
Hydrogenovibrio .......................................................... 86 Inquilinus .................................................................... 35
Hydrogenovibrio marinus .............................................. 86 Inquilinus limosus ........................................................ 35
Hylemonella ................................................................ 70 Intrasporangiaceae .................................................2 16
Hylemonella gracilis ..................................................... 70 Intrasporangium ...........................................................2 16
Hymenobacter..............................................................319 Intrasporangium calvum ................................................2 16
Hymenobacter actinosclerus ..........................................319 Iodobacter ................................................................... 75
Hymenobacter aerophilus .............................................319 Iodobacter ? uviatilis ..................................................... 75
Hymenobacter roseosalivarius .......................................319 Isobaculum ..................................................................1 97
Hyperthermus .............................................................. 12 Isobaculum melis ........................................................1 97
Hyperthermus butylicus ................................................ 12 Isochromatium ............................................................. 80
Hyphomicrobiaceae ................................................ 60 Isochromatium buderi ................................................... 80
Hyphomicrobium ......................................................... 60 Isosphaera ...................................................................3 01
Hyphomicrobium aestuarii ............................................ 60 Isosphaera pallida.........................................................3 01
Hyphomicrobium chloromethanicum .............................. 60 Iyengariella.................................................................. 33
Hyphomicrobium coagulans .......................................... 60 Iyengariella sp ............................................................. 33
Hyphomicrobium denitri?cans ....................................... 60
Hyphomicrobium facile subsp. subspecies facile ............. 60 J
Hyphomicrobium facile tolerans .................................... 60 Jahnia .........................................................................1 36
Hyphomicrobium facile ureaphilum ............................... 60 Jahnia thaxteri ..............................................................1 36
Hyphomicrobium hollandicum ....................................... 60 Janibacter ....................................................................2 16
Hyphomicrobium indicum ............................................. 60 Janibacter brevis...........................................................2 16
Hyphomicrobium methylovorum ................................... 60 Janibacter limosus ........................................................2 16
Hyphomicrobium neptunium ......................................... 60 Janibacter terrae ...........................................................2 16
Hyphomicrobium sulfonivorans .................................... 60 Jannaschia ................................................................... 43
Hyphomicrobium vulgare.............................................. 60 Jannaschia helgolandensis ............................................. 43
Hyphomicrobium zavarzinii .......................................... 60 Janthinobacterium ........................................................ 67
Hyphomonas ................................................................ 43 Janthinobacterium agaricidamnosum .............................. 67
Hyphomonas adhaerens ................................................ 43 Janthinobacterium lividum ............................................ 67
Hyphomonas hirschiana ................................................ 43 Jeotgalibacillus ............................................................1 79
Hyphomonas jannaschiana ............................................ 43 Jeotgalibacillus alimentarius ..........................................1 79
Hyphomonas johnsonii ................................................. 43 Jeotgalicoccus ..............................................................1 89
Hyphomonas neptunium ............................................... 43 Jeotgalicoccus halotolerans ...........................................1 89
Hyphomonas oceanitis .................................................. 43 Jeotgalicoccus psychrophilus .........................................1 89
Hyphomonas polymorpha ............................................. 43 Johnsonella ..................................................................1 49
Hyphomonas rosenbergii ............................................... 43 Johnsonella ignava .......................................................1 49
Jonesia ........................................................................2 17
I Jonesia denitri? cans ......................................................2 17
Ideonella ..................................................................... 71 Jonesiaceae...............................................................2 17
Ideonella dechloratans .................................................. 71
Idiomarina ...................................................................105 K
Idiomarina abyssalis .....................................................105 Kerstersia .................................................................... 68
Idiomarina baltica.........................................................105 Kerstersia gyiorum ....................................................... 68
Idiomarina loihiensis ....................................................105 Ketogulonicigenium ..................................................... 43
Idiomarina zobellii .......................................................105 Ketogulonicigenium robustum ....................................... 43
Ignavigranum ...............................................................196 Ketogulonicigenium vulgare .......................................... 43
Ignavigranum ruof?ae ...................................................196 Kibdelosporangium ......................................................2 49
Ignicoccus ................................................................... 12 Kibdelosporangium albatum ..........................................2 49
Ignicoccus islandicus .................................................... 12 Kibdelosporangium aridum subsp. aridum ......................2 49
Ignicoccus paci?cus...................................................... 12 Kibdelosporangium aridum subsp. largum ......................2 49
Ilyobacter ....................................................................321 Kibdelosporangium philippinense ..................................2 49
355
Kineococcus ................................................................298 Kocuria palustris ..........................................................2 11

Kineococcus aurantiacus ...............................................298 Kocuria polaris ............................................................2 11
Kineococcus radiotolerans ............................................298 Kocuria rhizophila ........................................................2 11
Kineosphaera ...............................................................215 Kocuria rosea ...............................................................2 11
Kineosphaera limosa.....................................................215 Kocuria varians ............................................................2 11
Kineosporia .................................................................298 Ko? eria ......................................................................1 37
Kineosporia aurantiaca..................................................298 Ko? eria ?ava ...............................................................1 37
Kineosporia mikuniensis ...............................................298 Ko?eriaceae .............................................................1 37
Kineosporia rhamnosa ..................................................298 Kozakia ...................................................................... 39
Kineosporia rhizophila ..................................................298 Kozakia baliensis ........................................................ 39
Kineosporia succinea ....................................................298 Kribbella .....................................................................2 45
Kineosporiaceae ......................................................298 Kribbella ?avida...........................................................2 45
Kingella ...................................................................... 75 Kribbella koreensis .......................................................2 46
Kingella denitri?cans .................................................... 76 Kribbella sandramycini .................................................2 46
Kingella indologenes .................................................... 76 Kurthia........................................................................1 85
Kingella kingae ............................................................ 75 Kurthia gibsonii ...........................................................1 85
Kingella oralis ............................................................. 76 Kurthia sibirica ............................................................1 85
Kitasatospora ...............................................................282 Kurthia zop? i...............................................................1 85
Kitasatospora azatica ....................................................282 Kutzneria ....................................................................2 49
Kitasatospora cheerisanensis..........................................283 Kutzneria albida ...........................................................2 49
Kitasatospora cineracea.................................................283 Kutzneria kofuensis ......................................................2 49
Kitasatospora cochleata.................................................283 Kutzneria viridogrisea...................................................2 49
Kitasatospora cystarginea ..............................................283 Kytococcus ..................................................................2 16
Kitasatospora griseola ...................................................283 Kytococcus schroeteri ...................................................2 16
Kitasatospora kifunensis ...............................................283 Kytococcus sedentarius .................................................2 16
Kitasatospora mediocidica .............................................283
Kitasatospora niigatensis ...............................................283 L
Kitasatospora paracochleata...........................................283 Labrys......................................................................... 61
Kitasatospora phosalacinea ............................................283 Labrys monachus ......................................................... 61
Kitasatospora putterlickiae ............................................283 Lachnobacterium ..........................................................1 49
Kitasatospora setae .......................................................282 Lachnobacterium bovis .................................................1 49
Klebsiella ....................................................................118 Lachnospira .................................................................1 49
Klebsiella granulomatis .................................................118 Lachnospira multipara ..................................................1 49
Klebsiella mobilis.........................................................118 Lachnospira pectinoschiza.............................................1 49
Klebsiella ornithinolytica ..............................................118 Lachnospiraceae......................................................1 49
Klebsiella oxytoca ........................................................118 Lactobacillaceae ......................................................1 90
Klebsiella ozaenae ........................................................118 Lactobacillales.........................................................1 90
Klebsiella planticola .....................................................118 Lactobacillus ...............................................................1 90
Klebsiella pneumoniae subsp. ozaenae ...........................118 Lactobacillus acetotolerans ............................................1 90
Klebsiella pneumoniae subsp. pneumoniae .....................118 Lactobacillus acidipiscis ...............................................1 90
Klebsiella pneumoniae subsp. rhinoscleromatis ...............118 Lactobacillus acidophilus ..............................................1 90
Klebsiella rhinoscleromatis ...........................................118 Lactobacillus agilis .......................................................1 90
Klebsiella terrigena .......................................................118 Lactobacillus algidus ....................................................1 90
Klebsiella trevisanii ......................................................118 Lactobacillus alimentarius .............................................1 90
Kluyvera .....................................................................118 Lactobacillus amylolyticus ............................................1 90
Kluyvera ascorbata .......................................................118 Lactobacillus amylophilus .............................................1 90
Kluyvera cochleae ........................................................119 Lactobacillus amylovorus ..............................................1 90
Kluyvera cryocrescens ..................................................119 Lactobacillus animalis ..................................................1 90
Kluyvera georgiana ......................................................119 Lactobacillus arizonensis ..............................................1 90
Knoellia ......................................................................216 Lactobacillus aviarius subsp. araf? nosus.........................1 90
Knoellia sinensis .........................................................216 Lactobacillus aviarius subsp. aviarius .............................1 90
Knoellia subterranea ....................................................216 Lactobacillus bavaricus .................................................1 90
Kocuria .......................................................................211 Lactobacillus bifermentans ............................................1 90
Kocuria erythromyxa ....................................................211 Lactobacillus brevis ......................................................1 90
Kocuria kristinae ..........................................................211 Lactobacillus buchneri ..................................................1 90
356
Lactobacillus bulgaricus ................................................191 Lactobacillus kunkeei ...................................................1 93

Lactobacillus carnis ......................................................191 Lactobacillus lactis .......................................................1 93
Lactobacillus casei subsp. alactosus ...............................191 Lactobacillus leichmannii ..............................................1 93
Lactobacillus casei subsp. casei .....................................191 Lactobacillus lindneri ...................................................1 93
Lactobacillus casei subsp. pseudoplantarum ....................191 Lactobacillus malefermentans ........................................1 93
Lactobacillus casei subsp. rhamnosus .............................191 Lactobacillus mali ........................................................1 93
Lactobacillus casei subsp. tolerans .................................191 Lactobacillus maltaromicus ...........................................1 93
Lactobacillus catenaformis ............................................191 Lactobacillus manihotivorans ........................................1 93
Lactobacillus cellobiosus ..............................................191 Lactobacillus mindensis ................................................1 93
Lactobacillus coleohominis ...........................................191 Lactobacillus minor ......................................................1 93
Lactobacillus collinoides ...............................................191 Lactobacillus minutus ...................................................1 93
Lactobacillus confusus ..................................................191 Lactobacillus mucosae ..................................................1 93
Lactobacillus coryniformis subsp. coryniformis ...............191 Lactobacillus murinus ...................................................1 93
Lactobacillus coryniformis subsp. torquens .....................191 Lactobacillus nagelii.....................................................1 93
Lactobacillus crispatus ..................................................191 Lactobacillus oris .........................................................1 93
Lactobacillus curvatus subsp. curvatus ...........................191 Lactobacillus panis .......................................................1 93
Lactobacillus curvatus subsp. melibiosus ........................191 Lactobacillus pantheris .................................................1 93
Lactobacillus cypricasei ................................................191 Lactobacillus parabuchneri ............................................1 93
Lactobacillus delbrueckii subsp. bulgaricus.....................190 Lactobacillus paracasei subsp. paracasei .........................1 93
Lactobacillus delbrueckii subsp. delbrueckii ...................190 Lactobacillus paracasei subsp. tolerans ...........................1 93
Lactobacillus delbrueckii subsp. lactis ............................190 Lactobacillus paracollinoides .........................................1 93
Lactobacillus diolivorans ..............................................191 Lactobacillus parake?ri .................................................1 93
Lactobacillus divergens .................................................191 Lactobacillus paralimentarius ........................................1 93
Lactobacillus durianis ..................................................191 Lactobacillus paraplantarum ..........................................1 93
Lactobacillus equi .......................................................191 Lactobacillus pentosus ..................................................1 93
Lactobacillus farciminis ................................................191 Lactobacillus perolens ..................................................1 93
Lactobacillus ferintoshensis ..........................................192 Lactobacillus piscicola ..................................................1 94
Lactobacillus fermentum ...............................................192 Lactobacillus plantarum ................................................1 94
Lactobacillus fornicalis .................................................192 Lactobacillus pontis ......................................................1 94
Lactobacillus fructivorans .............................................192 Lactobacillus psittaci ....................................................1 94
Lactobacillus fructosus .................................................192 Lactobacillus reuteri .....................................................1 94
Lactobacillus frumenti ..................................................192 Lactobacillus rhamnosus ...............................................1 94
Lactobacillus fuchuensis ..............................................192 Lactobacillus rimae ......................................................1 94
Lactobacillus gallinarum ...............................................192 Lactobacillus rogosae ...................................................1 94
Lactobacillus gasseri.....................................................192 Lactobacillus ruminis....................................................1 94
Lactobacillus graminis ..................................................192 Lactobacillus sakei subsp. carnosus ................................1 94
Lactobacillus halotolerans .............................................192 Lactobacillus sakei subsp. sakei.....................................1 94
Lactobacillus hamsteri ..................................................192 Lactobacillus salivarius subsp. salicinius ........................1 94
Lactobacillus helveticus ................................................192 Lactobacillus salivarius subsp. salivarius ........................1 94
Lactobacillus heterohiochii ............................................192 Lactobacillus sanfranciscensis .......................................1 94
Lactobacillus hilgardii ..................................................192 Lactobacillus sharpeae ..................................................1 94
Lactobacillus homohiochii ............................................192 Lactobacillus suebicus ..................................................1 94
Lactobacillus iners ........................................................192 Lactobacillus thermotolerans .........................................1 94
Lactobacillus ingluviei ..................................................192 Lactobacillus trichodes .................................................1 94
Lactobacillus intestinalis ...............................................192 Lactobacillus uli ...........................................................1 94
Lactobacillus jensenii ...................................................192 Lactobacillus vaccinostercus ..........................................1 94
Lactobacillus johnsonii .................................................192 Lactobacillus vaginalis ..................................................1 94
Lactobacillus kandleri ...................................................192 Lactobacillus versmoldensis ..........................................1 94
Lactobacillus ke? ranofaciens .........................................192 Lactobacillus viridescens ..............................................1 94
Lactobacillus ke? ranofaciens subsp. ke? ranofaciens ........192 Lactobacillus vitulinus ..................................................1 94
Lactobacillus ke? ranofaciens subsp. ke? rgranum ............192 Lactobacillus xylosus....................................................1 94
Lactobacillus ke? rgranum .............................................192 Lactobacillus yamanashiensis subsp. mali .......................1 95
Lactobacillus ke? ri .......................................................193 Lactobacillus yamanashiensis subsp. yamanashiensis .......1 94
Lactobacillus kimchii....................................................193 Lactobacillus zeae ........................................................1 95
Lactobacillus kitasatonis ...............................................193 Lactococcus .................................................................2 04
357
Lactococcus garvieae ....................................................204 Legionella lytica........................................................... 88

Lactococcus lactis subsp. cremoris .................................204 Legionella maceachernii ............................................... 88
Lactococcus lactis subsp. diacetilactis ............................204 Legionella micdadei ..................................................... 88
Lactococcus lactis subsp. hordniae .................................204 Legionella moravica ..................................................... 88
Lactococcus lactis subsp. lactis ......................................204 Legionella nautarum ..................................................... 88
Lactococcus piscium .....................................................204 Legionella oakridgensis ................................................ 88
Lactococcus plantarum .................................................204 Legionella parisiensis ................................................... 88
Lactococcus raf? nolactis ...............................................204 Legionella pittsburghensis ............................................. 88
Lactosphaera................................................................197 Legionella pneumophila subsp. fraseri............................ 87
Lactosphaera pasteurii ..................................................197 Legionella pneumophila subsp. pascullei ........................ 87
Lamprobacter ............................................................... 80 Legionella pneumophila subsp. pneumophila .................. 87
Lamprobacter modestohalophilus ................................... 80 Legionella quateirensis ................................................. 88
Lamprocystis ............................................................... 80 Legionella quinlivanii ................................................... 88
Lamprocystis purpurea.................................................. 80 Legionella rowbothamii ................................................ 88
Lamprocystis roseopersicina.......................................... 80 Legionella rubrilucens .................................................. 88
Lampropedia................................................................ 70 Legionella sainthelensi .................................................. 88
Lampropedia hyalina .................................................... 70 Legionella santicrucis ................................................... 88
Laribacter .................................................................... 76 Legionella shakespearei ................................................ 88
Laribacter hongkongensis .............................................. 76 Legionella spiritensis .................................................... 88
Lautropia ..................................................................... 65 Legionella steigerwaltii ................................................. 89
Lautropia mirabilis ....................................................... 65 Legionella taurinensis ................................................... 89
Lawsonia .....................................................................129 Legionella tucsonensis .................................................. 89
Lawsonia intracellularis ................................................129 Legionella wadsworthii ................................................. 89
Lechevalieria ...............................................................251 Legionella waltersii ...................................................... 89
Lechevalieria aerocolonigenes .......................................251 Legionella worsleiensis ................................................. 89
Lechevalieria ? ava .......................................................251 Legionellaceae ......................................................... 87
Leclercia .....................................................................119 Legionellales ............................................................ 87
Leclercia adecarboxylata ...............................................119 Leifsonia .....................................................................2 22
Legionella ................................................................... 87 Leifsonia aquatica ........................................................2 22
Legionella adelaidensis ................................................. 87 Leifsonia aurea ............................................................2 22
Legionella anisa ........................................................... 87 Leifsonia naganoensis ...................................................2 22
Legionella beliardensis ................................................. 87 Leifsonia poae .............................................................2 22
Legionella birminghamensis .......................................... 87 Leifsonia rubra.............................................................2 22
Legionella bozemanii.................................................... 87 Leifsonia shinshuensis ..................................................2 22
Legionella brunensis ..................................................... 87 Leifsonia xyli subsp. cynodontis ....................................2 22
Legionella busanensis ................................................... 87 Leifsonia xyli subsp. xyli ..............................................2 22
Legionella cherrii ......................................................... 87 Leisingera ................................................................... 43
Legionella cincinnatiensis ............................................. 87 Leisingera methylohalidivorans .................................... 43
Legionella drozanskii.................................................... 88 Leminorella .................................................................1 19
Legionella dumof? i ...................................................... 87 Leminorella grimontii ...................................................1 19
Legionella erythra ........................................................ 88 Leminorella richardii ....................................................1 19
Legionella fair? eldensis ................................................ 88 Lentibacillus ................................................................1 79
Legionella fallonii ........................................................ 88 Lentibacillus salicampi .................................................1 79
Legionella feeleii.......................................................... 88 Lentzea .......................................................................2 51
Legionella geestiana ..................................................... 88 Lentzea albida ..............................................................2 51
Legionella gormanii...................................................... 88 Lentzea albidocapillata .................................................2 51
Legionella gratiana ....................................................... 88 Lentzea californiensis ...................................................2 51
Legionella gresilensis ................................................... 88 Lentzea ? aviverrucosa ..................................................2 51
Legionella hackeliae ..................................................... 88 Lentzea violacea...........................................................2 51
Legionella israelensis .................................................... 88 Lentzea waywayandensis ..............................................2 51
Legionella jamestowniensis ........................................... 88 Leptolyngbya ............................................................... 32
Legionella jordanis ....................................................... 88 Leptonema...................................................................3 05
Legionella lansingensis ................................................. 88 Leptonema illini ...........................................................3 05
Legionella londiniensis ................................................. 88 Leptospira ...................................................................3 05
Legionella longbeachae................................................. 88 Leptospira alexanderi....................................................3 05
358
Leptospira bi? exa .........................................................305 Leucothrix mucor ......................................................... 86

Leptospira borgpetersenii ..............................................305 Lewinella ....................................................................3 17
Leptospira fainei ..........................................................305 Lewinella cohaerens .....................................................3 17
Leptospira inadai..........................................................305 Lewinella nigricans ......................................................3 17
Leptospira interrogans ..................................................305 Lewinella persica .........................................................3 17
Leptospira kirschneri ....................................................305 Liberibacter africanus subsp. africanus ........................... 56
Leptospira meyeri.........................................................305 Liberibacter africanus subsp. capensis ............................ 56
Leptospira noguchii ......................................................305 Liberibacter asiaticus .................................................... 56
Leptospira parva...........................................................305 Limnobacter ................................................................ 65
Leptospira santarosai ....................................................305 Limnobacter thiooxidans ............................................... 65
Leptospira weilii ..........................................................305 Limnothrix .................................................................. 32
Leptospira wolbachii ....................................................305 Limnothrix sp .............................................................. 32
Leptospiraceae.........................................................305 Listeria........................................................................1 81
Leptospirillum ............................................................. 29 Listeria denitri?cans .....................................................1 81
Leptospirillum ferriphilum ........................................... 29 Listeria grayi ...............................................................1 81
Leptospirillum ferrooxidans ........................................... 29 Listeria innocua ...........................................................1 81
Leptospirillum thermoferrooxidans ................................ 29 Listeria ivanovii subsp. ivanovii ....................................1 81
Leptothrix ................................................................... 71 Listeria ivanovii subsp. londoniensis ..............................1 81
Leptothrix cholodnii ..................................................... 71 Listeria monocytogenes ................................................1 81
Leptothrix discophora ................................................... 71 Listeria murrayi ...........................................................1 81
Leptothrix lopholea ...................................................... 71 Listeria seeligeri ...........................................................1 81
Leptothrix mobilis ........................................................ 71 Listeria welshimeri .......................................................1 81
Leptothrix ochracea ...................................................... 71 Listeriaceae..............................................................1 81
Leptotrichia .................................................................321 Listonella ....................................................................1 11
Leptotrichia buccalis.....................................................321 Listonella anguillarum ..................................................1 11
Leptotrichia goodfellowii ..............................................321 Listonella damselae ......................................................1 11
Leptotrichia hofstadii ....................................................321 Listonella pelagia .........................................................1 11
Leptotrichia shahii ........................................................321 Lonepinella..................................................................1 27
Leptotrichia trevisanii ..................................................321 Lonepinella koalarum ...................................................1 27
Leptotrichia wadei ........................................................321 Luteimonas .................................................................. 84
Leucobacter .................................................................222 Luteimonas mephitis..................................................... 84
Leucobacter komagatae.................................................222 Luteococcus.................................................................2 44
Leuconostoc ................................................................199 Luteococcus japonicus ..................................................2 44
Leuconostoc amelibiosum .............................................199 Luteococcus peritonei ...................................................2 44
Leuconostoc argentinum ...............................................199 Luteococcus sanguinis ..................................................2 44
Leuconostoc carnosum ..................................................199 Lyngbya ...................................................................... 32
Leuconostoc citreum .....................................................199 Lyngbya confervoides ................................................... 32
Leuconostoc cremoris ...................................................199 Lysobacter ................................................................... 84
Leuconostoc dextranicum ..............................................199 Lysobacter antibioticus ................................................. 84
Leuconostoc fallax .......................................................199 Lysobacter brunescens .................................................. 84
Leuconostoc ?culneum ................................................199 Lysobacter enzymogenes subsp. cookii ........................... 84
Leuconostoc fructosum ................................................199 Lysobacter enzymogenes subsp. enzymogenes ................ 84
Leuconostoc gasicomitatum ...........................................199 Lysobacter gummosus ................................................... 84
Leuconostoc gelidum ....................................................199 Lyticum ....................................................................... 42
Leuconostoc inhae ........................................................199 Lyticum ?agellatum ...................................................... 42
Leuconostoc kimchii.....................................................199 Lyticum sinuosum ........................................................ 42
Leuconostoc lactis ........................................................199
Leuconostoc mesenteroides subsp. cremoris ....................199 M
Leuconostoc mesenteroides subsp. dextranicum ..............199 Macrococcus................................................................1 89
Leuconostoc mesenteroides subsp. mesenteroides ............199 Macrococcus bovicus....................................................1 89
Leuconostoc oeni .........................................................199 Macrococcus carouselicus .............................................1 89
Leuconostoc paramesenteroides .....................................199 Macrococcus caseolyticus .............................................1 89
Leuconostoc pseudomesenteroides .................................199 Macrococcus equipercicus .............................................1 89
Leuconostocaceae....................................................199 Macromonas ................................................................ 70
Leucothrix ................................................................... 86 Macromonas bipunctata ................................................ 70
359
Macromonas mobilis .................................................... 70 Marinospirillum alkaliphilum ........................................ 92

Magnetobacterium ........................................................ 29 Marinospirillum insulare ............................................... 92
Magnetobacterium bavaricum ........................................ 29 Marinospirillum megaterium ......................................... 92
Magnetospirillum ......................................................... 35 Marinospirillum minutulum ........................................... 91
Magnetospirillum gryphiswaldense ................................ 35 Marmoricola ................................................................2 46
Magnetospirillum magnetotacticum ................................ 35 Marmoricola aurantiacus ...............................................2 46
Malonomonas ..............................................................132 Massilia ...................................................................... 67
Malonomonas rubra ......................................................132 Massilia timonae .......................................................... 67
Mannheimia.................................................................127 Megamonas .................................................................3 09
Mannheimia glucosida ..................................................127 Megamonas hypermegale ..............................................3 09
Mannheimia granulomatis .............................................127 Megasphaera................................................................1 59
Mannheimia haemolytica ..............................................127 Megasphaera cerevisiae ................................................1 59
Mannheimia ruminalis ..................................................127 Megasphaera elsdenii....................................................1 59
Mannheimia varigena ...................................................127 Megasphaera micronuciformis .......................................1 59
Maricaulis ................................................................... 43 Meiothermus................................................................ 27
Maricaulis maris ........................................................... 44 Meiothermus cerbereus ................................................. 28
Maricaulis parjimensis .................................................. 44 Meiothermus chliarophilus ............................................ 28
Maricaulis salignorans .................................................. 44 Meiothermus ruber ....................................................... 28
Maricaulis virginensis ................................................... 44 Meiothermus silvanus ................................................... 28
Maricaulis washingtonensis ........................................... 44 Meiothermus taiwanensis .............................................. 28
Marichromatium .......................................................... 80 Melissococcus ..............................................................1 98
Marichromatium gracile ................................................ 80 Melissococcus plutonius ...............................................1 98
Marichromatium purpuratum ......................................... 80 Melittangium ...............................................................1 35
Marinibacillus ..............................................................179 Melittangium alboracemum nom corr. ............................1 35
Marinibacillus marinus .................................................179 Melittangium boletus ....................................................1 35
Marinilabilia ................................................................309 Melittangium lichenicola ...............................................1 35
Marinilabilia agarovorans ..............................................309 Meniscus .....................................................................3 19
Marinilabilia salmonicolor ............................................309 Meniscus glaucopis ......................................................3 19
Marinilactibacillus ........................................................197 Mesonia ......................................................................3 15
Marinilactibacillus psychrotolerans ................................197 Mesonia algae ..............................................................3 15
Marinithermus ............................................................. 27 Mesophilobacter ...........................................................1 02
Marinithermus hydrothermalis ....................................... 27 Mesophilobacter marinus ..............................................1 02
Marinitoga ................................................................... 26 Mesoplasma.................................................................1 70
Marinitoga camini ........................................................ 26 Mesoplasma chauliocola ...............................................1 70
Marinitoga piezophila .................................................. 26 Mesoplasma coleopterae ...............................................1 70
Marinobacter ...............................................................105 Mesoplasma corruscae ..................................................1 70
Marinobacter aquaeolei .................................................105 Mesoplasma entomophilum ...........................................1 70
Marinobacter excellens .................................................105 Mesoplasma ?orum ......................................................1 70
Marinobacter hydrocarbonoclasticus ..............................105 Mesoplasma grammopterae ...........................................1 70
Marinobacter litoralis ....................................................105 Mesoplasma lactucae ....................................................1 70
Marinobacter lutaoensis ................................................106 Mesoplasma photuris ....................................................1 70
Marinobacterium ..........................................................106 Mesoplasma pleciae ......................................................1 70
Marinobacterium georgiense..........................................106 Mesoplasma seiffertii....................................................1 70
Marinobacterium jannaschii ..........................................106 Mesoplasma syrphidae ..................................................1 70
Marinobacterium stanieri ..............................................106 Mesoplasma tabanidae ..................................................1 70
Marinococcus ..............................................................186 Mesorhizobium ............................................................ 56
Marinococcus albus ......................................................186 Mesorhizobium amorphae ............................................. 56
Marinococcus halophilus ...............................................186 Mesorhizobium chacoense ............................................ 56
Marinococcus hispanicus ..............................................186 Mesorhizobium ciceri ................................................... 56
Marinomonas ............................................................... 91 Mesorhizobium huakuii ................................................ 56
Marinomonas communis ............................................... 91 Mesorhizobium loti ...................................................... 56
Marinomonas mediterranea ........................................... 91 Mesorhizobium mediterraneum ...................................... 57
Marinomonas primoryensis ........................................... 91 Mesorhizobium plurifarium ........................................... 57
Marinomonas vaga ....................................................... 91 Mesorhizobium tianshanense ......................................... 57
Marinospirillum ........................................................... 91 Metallosphaera............................................................. 13
360
Metallosphaera prunae .................................................. 13 Methanococcales ..................................................... 15

Metallosphaera sedula ................................................... 13 Methanococci........................................................... 15
Methanimicrococcus ..................................................... 19 Methanococcoides ........................................................ 18
Methanimicrococcus blatticola ....................................... 19 Methanococcoides burtonii............................................ 18
Methanobacteria ..................................................... 13 Methanococcoides methylutens ...................................... 18
Methanobacteriaceae.............................................. 13 Methanococcus ............................................................ 15
Methanobacteriales................................................. 13 Methanococcus deltae ................................................... 15
Methanobacterium ........................................................ 13 Methanococcus fervens ................................................. 15
Methanobacterium alcaliphilum ..................................... 13 Methanococcus frisius .................................................. 15
Methanobacterium arbophilicum .................................... 13 Methanococcus halophilus ............................................ 15
Methanobacterium bryantii ............................................ 13 Methanococcus igneus .................................................. 15
Methanobacterium congolense ....................................... 13 Methanococcus infernus ................................................ 15
Methanobacterium de? uvii ............................................ 13 Methanococcus jannaschii ............................................. 15
Methanobacterium espanolae ......................................... 13 Methanococcus maripaludis........................................... 15
Methanobacterium formicicum ...................................... 13 Methanococcus mazei ................................................... 15
Methanobacterium ivanovii ........................................... 13 Methanococcus thermolithotrophicus ............................. 15
Methanobacterium mobile ............................................. 13 Methanococcus vannielii ............................................... 15
Methanobacterium oryzae ............................................. 13 Methanococcus voltae................................................... 15
Methanobacterium palustre ........................................... 13 Methanococcus vulcanius .............................................. 15
Methanobacterium ruminantium .................................... 13 Methanocorpusculaceae ......................................... 17
Methanobacterium subterraneum ................................... 13 Methanocorpusculum ................................................... 17
Methanobacterium thermaggregans ................................ 13 Methanocorpusculum aggregans .................................... 18
Methanobacterium thermalcaliphilum ............................. 14 Methanocorpusculum bavaricum .................................... 18
Methanobacterium thermautotrophicum .......................... 14 Methanocorpusculum labreanum .................................... 18
Methanobacterium thermo? exum ................................... 14 Methanocorpusculum parvum ........................................ 17
Methanobacterium thermoformicicum ............................ 14 Methanocorpusculum sinense ........................................ 18
Methanobacterium thermophilum ................................... 14 Methanoculleus ............................................................ 16
Methanobacterium uliginosum ....................................... 14 Methanoculleus bourgensis............................................ 16
Methanobacterium wolfei.............................................. 14 Methanoculleus chikugoensis ........................................ 16
Methanobrevibacter ...................................................... 14 Methanoculleus marisnigri ............................................ 16
Methanobrevibacter acididurans .................................... 14 Methanoculleus oldenburgensis ..................................... 16
Methanobrevibacter arboriphilicus ................................. 14 Methanoculleus olentangyi ............................................ 17
Methanobrevibacter curvatus ......................................... 14 Methanoculleus palmolei .............................................. 17
Methanobrevibacter cuticularis ...................................... 14 Methanoculleus submarinus........................................... 17
Methanobrevibacter ? liformis ........................................ 14 Methanoculleus thermophilicus ...................................... 17
Methanobrevibacter gottschalkii ................................... 14 Methanofollis ............................................................... 17
Methanobrevibacter oralis ............................................. 14 Methanofollis aquaemaris ............................................. 17
Methanobrevibacter ruminantium ................................... 14 Methanofollis liminatans ............................................... 17
Methanobrevibacter smithii ........................................... 14 Methanofollis tationis ................................................... 17
Methanobrevibacter thaueri .......................................... 14 Methanogenium ........................................................... 17
Methanobrevibacter woesei .......................................... 14 Methanogenium aggregans ............................................ 17
Methanobrevibacter wolinii .......................................... 14 Methanogenium bourgense ............................................ 17
Methanocalculus .......................................................... 18 Methanogenium cariaci ................................................. 17
Methanocalculus chunghsingensis .................................. 18 Methanogenium frigidum .............................................. 17
Methanocalculus halotolerans ........................................ 18 Methanogenium frittonii ............................................... 17
Methanocalculus pumilus .............................................. 18 Methanogenium liminatans ........................................... 17
Methanocalculus taiwanensis ......................................... 18 Methanogenium marinum ............................................. 17
Methanocaldococcaceae ......................................... 16 Methanogenium marisnigri............................................ 17
Methanocaldococcus .................................................... 16 Methanogenium olentangyi ........................................... 17
Methanocaldococcus fervens ......................................... 16 Methanogenium organophilum ...................................... 17
Methanocaldococcus indicus ......................................... 16 Methanogenium tationis ................................................ 17
Methanocaldococcus infernus ........................................ 16 Methanogenium thermophilicum .................................... 17
Methanocaldococcus jannaschii ..................................... 16 Methanohalobium ........................................................ 18
Methanocaldococcus vulcanius ...................................... 16 Methanohalobium evestigatum ...................................... 18
Methanococcaceae................................................... 15 Methanohalophilus ....................................................... 18
361
Methanohalophilus halophilus ....................................... 19 Methanospirillaceae................................................ 18

Methanohalophilus mahii .............................................. 19 Methanospirillum ......................................................... 18
Methanohalophilus oregonensis ..................................... 19 Methanospirillum hungatei ............................................ 18
Methanohalophilus portucalensis ................................... 19 Methanothermaceae ............................................... 15
Methanohalophilus zhilinae ........................................... 19 Methanothermobacter ................................................... 14
Methanolacinia ............................................................ 17 Methanothermobacter de?uvii ....................................... 14
Methanolacinia paynteri ................................................ 17 Methanothermobacter marburgensis ............................... 15
Methanolobus .............................................................. 19 Methanothermobacter thermautotrophicus ....................... 15
Methanolobus bombayensis ........................................... 19 Methanothermobacter thermo?exus ................................ 15
Methanolobus oregonensis ............................................ 19 Methanothermobacter thermophilus ............................... 15
Methanolobus siciliae ................................................... 19 Methanothermobacter wolfeii ........................................ 15
Methanolobus taylorii ................................................... 19 Methanothermococcus ................................................. 15
Methanolobus tindarius ................................................. 19 Methanothermococcus okinawensis ............................... 16
Methanolobus vulcani ................................................... 19 Methanothermococcus thermolithotrophicus ................... 16
Methanomethylovorans ................................................. 19 Methanothermus .......................................................... 15
Methanomethylovorans hollandica ................................. 19 Methanothermus fervidus .............................................. 15
Methanomicrobia .................................................... 16 Methanothermus sociabilis ............................................ 15
Methanomicrobiaceae............................................. 16 Methanotorris .............................................................. 16
Methanomicrobiales ............................................... 16 Methanotorris igneus .................................................... 16
Methanomicrobium ...................................................... 16 Methylarcula................................................................ 44
Methanomicrobium mobile ........................................... 16 Methylarcula marina ..................................................... 44
Methanomicrobium paynteri.......................................... 16 Methylarcula terricola ................................................... 44
Methanoplanus............................................................. 17 Methylobacillus ........................................................... 73
Methanoplanus endosymbiosus ...................................... 17 Methylobacillus ?agellatus ............................................ 73
Methanoplanus limicola ................................................ 17 Methylobacillus glycogenes........................................... 73
Methanoplanus petrolearius ........................................... 17 Methylobacter .............................................................. 89
Methanopyraceae.................................................... 24 Methylobacter agilis ..................................................... 89
Methanopyrales....................................................... 24 Methylobacter albus ..................................................... 89
Methanopyri ............................................................ 24 Methylobacter luteus .................................................... 89
Methanopyrus .............................................................. 24 Methylobacter marinus ................................................. 89
Methanopyrus kandleri ................................................. 24 Methylobacter pelagicus ............................................... 90
Methanosaeta .............................................................. 19 Methylobacter psychrophilus ......................................... 90
Methanosaeta concilii ................................................... 19 Methylobacter whittenburyi ........................................... 90
Methanosaeta thermoacetophila ..................................... 19 Methylobacteriaceae ............................................... 62
Methanosaeta thermophila ............................................. 19 Methylobacterium ........................................................ 62
Methanosaetaceae ................................................... 19 Methylobacterium aminovorans ..................................... 62
Methanosalsum ........................................................... 19 Methylobacterium chloromethanicum ............................. 62
Methanosalsum zhilinae ................................................ 19 Methylobacterium dichloromethanicum .......................... 62
Methanosarcina ............................................................ 18 Methylobacterium extorquens ........................................ 62
Methanosarcina acetivorans ........................................... 18 Methylobacterium fujisawaense ..................................... 62
Methanosarcina baltica ................................................. 18 Methylobacterium lusitanum ........................................ 62
Methanosarcina barkeri ................................................. 18 Methylobacterium mesophilicum ................................... 62
Methanosarcina frisia.................................................... 18 Methylobacterium organophilum ................................... 62
Methanosarcina lacustris .............................................. 18 Methylobacterium radiotolerans ..................................... 62
Methanosarcina mazei .................................................. 18 Methylobacterium rhodesianum ..................................... 62
Methanosarcina methanica ............................................ 18 Methylobacterium rhodinum .......................................... 62
Methanosarcina semesiae .............................................. 18 Methylobacterium suomiense ....................................... 62
Methanosarcina siciliae ................................................. 18 Methylobacterium thiocyanatum .................................... 62
Methanosarcina thermophila.......................................... 18 Methylobacterium zatmanii ........................................... 63
Methanosarcina vacuolata ............................................. 18 Methylocaldum ............................................................ 90
Methanosarcinaceae ............................................... 18 Methylocaldum gracile ................................................. 90
Methanosarcinales .................................................. 18 Methylocaldum szegediense .......................................... 90
Methanosphaera ........................................................... 14 Methylocaldum tepidum ............................................... 90
Methanosphaera cuniculi ............................................... 14 Methylocapsa .............................................................. 58
Methanosphaera stadtmanae .......................................... 14 Methylocapsa acidiphila ............................................... 58
362
Methylocella ................................................................ 58 Micavibrio ...................................................................1 34

Methylocella palustris ................................................... 58 Micavibrio admirandus .................................................1 34
Methylocella tundrae .................................................... 58 Microbacteriaceae...................................................2 17
Methylococcaceae.................................................... 89 Microbacterium ............................................................2 17
Methylococcales....................................................... 89 Microbacterium aerolatum ............................................2 17
Methylococcus ............................................................. 89 Microbacterium arabinogalactanolyticum........................2 17
Methylococcus bovis .................................................... 89 Microbacterium arborescens ..........................................2 17
Methylococcus capsulatus ............................................. 89 Microbacterium aurantiacum .........................................2 17
Methylococcus chroococcus .......................................... 89 Microbacterium aurum ..................................................2 17
Methylococcus luteus ................................................... 89 Microbacterium barkeri.................................................2 17
Methylococcus mobilis ................................................. 89 Microbacterium chocolatum ..........................................2 17
Methylococcus thermophilus ......................................... 89 Microbacterium dextranolyticum ...................................2 17
Methylococcus vinelandii.............................................. 89 Microbacterium esteraromaticum ...................................2 17
Methylococcus whittenburyi.......................................... 89 Microbacterium ?avescens ............................................2 17
Methylocystaceae .................................................... 57 Microbacterium foliorum ..............................................2 17
Methylocystis .............................................................. 57 Microbacterium gubbeenense ........................................2 17
Methylocystis echinoides .............................................. 57 Microbacterium halophilum ...........................................2 17
Methylocystis parvus .................................................... 57 Microbacterium hominis ...............................................2 17
Methylomicrobium ....................................................... 90 Microbacterium imperiale .............................................2 17
Methylomicrobium agile ............................................... 90 Microbacterium keratanolyticum ....................................2 17
Methylomicrobium album ............................................. 90 Microbacterium ketosireducens ......................................2 18
Methylomicrobium buryatense ....................................... 90 Microbacterium kitamiense ...........................................2 18
Methylomicrobium pelagicum ....................................... 90 Microbacterium lacticum ..............................................2 17
Methylomonas ............................................................. 90 Microbacterium laevaniformans .....................................2 18
Methylomonas aurantiaca.............................................. 90 Microbacterium liquefaciens ..........................................2 18
Methylomonas fodinarum ............................................. 90 Microbacterium luteolum ..............................................2 18
Methylomonas methanica.............................................. 90 Microbacterium maritypicum.........................................2 18
Methylomonas pelagica ................................................ 90 Microbacterium oxydans ...............................................2 18
Methylomonas scandinavica .......................................... 90 Microbacterium paraoxydans .........................................2 18
Methylophaga .............................................................. 86 Microbacterium phyllosphaerae .....................................2 18
Methylophaga alcalica .................................................. 87 Microbacterium resistens ..............................................2 18
Methylophaga marina ................................................... 86 Microbacterium saperdae ..............................................2 18
Methylophaga sul? dovorans .......................................... 87 Microbacterium schleiferi .............................................2 18
Methylophaga thalassica ............................................... 87 Microbacterium terrae...................................................2 18
Methylophilaceae .................................................... 73 Microbacterium terregens ..............................................2 18
Methylophilales ....................................................... 73 Microbacterium testaceum ............................................2 18
Methylophilus .............................................................. 73 Microbacterium thalassium ...........................................2 18
Methylophilus leisingeri................................................ 73 Microbacterium trichothecenolyticum ............................2 18
Methylophilus methylotrophus ....................................... 73 Microbacterium ulmi ....................................................2 18
Methylopila ................................................................. 57 Microbispaora aerata ....................................................2 88
Methylopila capsulata ................................................... 57 Microbispora ...............................................................2 88
Methylopila helvetica ................................................... 57 Microbispora amethystogenes ........................................2 88
Methylorhabdus ........................................................... 61 Microbispora bispora ....................................................2 88
Methylorhabdus multivorans ......................................... 61 Microbispora chromogenes ...........................................2 88
Methylosarcina ............................................................ 90 Microbispora corallina ..................................................2 88
Methylosarcina ?brata .................................................. 90 Microbispora diastatica .................................................2 88
Methylosarcina quisquiliarum ........................................ 90 Microbispora echinospora .............................................2 88
Methylosinus ............................................................... 57 Microbispora indica ......................................................2 88
Methylosinus sporium ................................................... 57 Microbispora karnatakensis ...........................................2 88
Methylosinus trichosporium .......................................... 57 Microbispora mesophila ................................................2 88
Methylosphaera............................................................ 90 Microbispora parva.......................................................2 88
Methylosphaera hansonii ............................................... 90 Microbispora rosea subsp. aerata ...................................2 88
Methylovorus ............................................................... 73 Microbispora rosea subsp. rosea ....................................2 88
Methylovorus glucosotrophus ........................................ 73 Microbispora thermodiastatica .......................................2 88
Methylovorus mays ...................................................... 73 Microbispora thermorosea .............................................2 88
363
Microbispora viridis .....................................................288 Microsphaeraceae ...................................................2 97

Microbulbifer ...............................................................106 Microtetraspora ............................................................2 88
Microbulbifer hydrolyticus ............................................106 Microtetraspora africana ...............................................2 89
Microbulbifer salipaludis ..............................................106 Microtetraspora angiospora ...........................................2 89
Micrococcaceae .......................................................209 Microtetraspora fastidiosa .............................................2 89
Micrococcineae........................................................209 Microtetraspora ferruginea ............................................2 89
Micrococcus ................................................................209 Microtetraspora ? exuosa ...............................................2 89
Micrococcus agilis ........................................................209 Microtetraspora fusca ...................................................2 89
Micrococcus antarcticus ................................................209 Microtetraspora glauca ..................................................2 88
Micrococcus halobius ...................................................209 Microtetraspora helvata.................................................2 89
Micrococcus kristinae ...................................................209 Microtetraspora malaysiensis .........................................2 89
Micrococcus luteus .......................................................209 Microtetraspora niveoalba .............................................2 89
Micrococcus lylae ........................................................209 Microtetraspora polychroma ..........................................2 89
Micrococcus nishinomiyaensis .......................................209 Microtetraspora pusilla .................................................2 89
Micrococcus roseus ......................................................209 Microtetraspora recticatena............................................2 89
Micrococcus sedentarius ...............................................209 Microtetraspora roseola.................................................2 89
Micrococcus varians .....................................................209 Microtetraspora roseoviolacea .......................................2 89
Microcoleus ................................................................. 32 Microtetraspora rubra ...................................................2 90
Microcoleus chthonoplastes ........................................... 32 Microtetraspora salmonea .............................................2 90
Microcoleus lacustris .................................................... 32 Microtetraspora spiralis.................................................2 90
Microcystis .................................................................. 31 Microtetraspora turkmeniaca .........................................2 90
Microcystis aeruginosa ................................................. 31 Microtetraspora tyrrhenii...............................................2 90
Microlunatus ................................................................244 Microtetraspora viridis ..................................................2 90
Microlunatus phosphovorus ...........................................244 Microvirga................................................................... 63
Micromonas.................................................................152 Microvirga subterranea ................................................. 63
Micromonas micros ......................................................152 Microvirgula ................................................................ 76
Micromonospora ..........................................................239 Microvirgula aerodenitri?cans ....................................... 76
Micromonospora aurantiaca...........................................239 Mitsuokella..................................................................1 59
Micromonospora brunnea..............................................239 Mitsuokella dentalis ......................................................1 59
Micromonospora carbonacea subsp. aurantiaca ...............239 Mitsuokella jalaludinii .................................................1 59
Micromonospora carbonacea subsp. carbonacea ..............239 Mitsuokella multacida...................................................1 59
Micromonospora chalcea ..............................................239 Mobiluncus ..................................................................2 08
Micromonospora chersina .............................................240 Mobiluncus curtisii subsp. curtisii ..................................2 08
Micromonospora coerulea .............................................240 Mobiluncus curtisii subsp. holmesii ...............................2 09
Micromonospora echinospora subsp. echinospora ............240 Mobiluncus mulieris .....................................................2 09
Micromonospora echinospora subsp. ferruginea ..............240 Modestobacter .............................................................2 97
Micromonospora echinospora subsp. pallida ...................240 Modestobacter multiseptatus ..........................................2 97
Micromonospora gallica ................................................240 Moellerella ..................................................................1 19
Micromonospora halophytica subsp. halophytica .............240 Moellerella wisconsensis ...............................................1 19
Micromonospora halophytica subsp. nigra ......................240 Mogibacterium.............................................................1 55
Micromonospora inositola .............................................240 Mogibacterium diversum ..............................................1 55
Micromonospora matsumotoense ...................................240 Mogibacterium neglectum ............................................1 55
Micromonospora olivasterospora ...................................240 Mogibacterium pumilum ...............................................1 55
Micromonospora purpurea ............................................240 Mogibacterium timidum ................................................1 55
Micromonospora purpureochromogenes .........................240 Mogibacterium vescum .................................................1 55
Micromonospora rhodorangea .......................................240 Mollicutes.................................................................1 66
Micromonospora rosaria ...............................................240 Moorella .....................................................................1 63
Micromonosporaceae..............................................239 Moorella glycerini ........................................................1 63
Micromonosporineae ..............................................239 Moorella thermoacetica.................................................1 63
Micropruina .................................................................246 Moorella thermoautotrophica.........................................1 63
Micropruina glycogenica ...............................................246 Moraxella ....................................................................1 02
Microscilla ..................................................................319 Moraxella anatipestifer .................................................1 02
Microscilla marina........................................................319 Moraxella atlantae ........................................................1 02
Microsphaera ...............................................................297 Moraxella boevrei ........................................................1 02
Microsphaera multipartita .............................................297 Moraxella bovis ...........................................................1 02
364
Moraxella canis ............................................................102 Mycobacterium celatum ................................................2 31

Moraxella caprae..........................................................102 Mycobacterium chelonae subsp. abscessus ......................2 31
Moraxella catarrhalis ....................................................102 Mycobacterium chelonae subsp. chelonae .......................2 31
Moraxella caviae ..........................................................102 Mycobacterium chitae...................................................2 31
Moraxella cuniculi........................................................102 Mycobacterium chlorophenolicum .................................2 31
Moraxella equi .............................................................102 Mycobacterium chubuense ............................................2 31
Moraxella lacunata .......................................................102 Mycobacterium con?uentis ...........................................2 31
Moraxella lincolnii .......................................................102 Mycobacterium conspicuum ..........................................2 31
Moraxella nonliquefaciens ............................................102 Mycobacterium cookii ..................................................2 31
Moraxella osloensis ......................................................102 Mycobacterium diernhoferi ...........................................2 31
Moraxella ovis .............................................................102 Mycobacterium doricum ...............................................2 31
Moraxella phenylpyruvica .............................................103 Mycobacterium duvalii .................................................2 31
Moraxella saccharolytica ...............................................103 Mycobacterium elephantis .............................................2 31
Moraxella urethralis......................................................103 Mycobacterium fallax ...................................................2 31
Moraxellaceae..........................................................102 Mycobacterium farcinogenes .........................................2 31
Morganella ..................................................................119 Mycobacterium ?avescens ............................................2 31
Morganella morganii subsp. morganii.............................119 Mycobacterium fortuitum subsp. acetamidolyticum .........2 31
Morganella morganii subsp. sibonii ................................119 Mycobacterium fortuitum subsp. fortuitum .....................2 31
Moritella .....................................................................106 Mycobacterium frederiksbergense ..................................2 31
Moritella abyssi ...........................................................106 Mycobacterium gadium ................................................2 31
Moritella japonica ........................................................106 Mycobacterium gastri ...................................................2 31
Moritella marina...........................................................106 Mycobacterium genavense ............................................2 31
Moritella profunda........................................................106 Mycobacterium gilvum .................................................2 32
Moritella viscosa ..........................................................106 Mycobacterium goodii ..................................................2 32
Moritella yayanosii .......................................................106 Mycobacterium gordonae ..............................................2 32
Morococcus ................................................................. 76 Mycobacterium haemophilum........................................2 32
Morococcus cerebrosus ................................................. 76 Mycobacterium hassiacum ............................................2 32
Muricauda ...................................................................315 Mycobacterium heckeshornense.....................................2 32
Muricauda ruestringensis ..............................................315 Mycobacterium heidelbergense ......................................2 32
Muricoccus .................................................................. 39 Mycobacterium hiberniae ..............................................2 32
Muricoccus roseus ........................................................ 39 Mycobacterium hodleri .................................................2 32
Mycetocola..................................................................222 Mycobacterium holsaticum ...........................................2 32
Mycetocola lacteus .......................................................222 Mycobacterium immunogenum ......................................2 32
Mycetocola saprophilus ................................................222 Mycobacterium interjectum ...........................................2 32
Mycetocola tolaasinivorans ...........................................222 Mycobacterium intermedium .........................................2 32
Mycobacteriaceae....................................................230 Mycobacterium intracellulare ........................................2 32
Mycobacterium ............................................................230 Mycobacterium kansasii................................................2 32
Mycobacterium abscessus .............................................230 Mycobacterium komossense ..........................................2 32
Mycobacterium africanum .............................................230 Mycobacterium kubicae ................................................2 32
Mycobacterium agri......................................................230 Mycobacterium lacus ....................................................2 32
Mycobacterium aichiense ..............................................230 Mycobacterium lenti? avum ...........................................2 32
Mycobacterium alvei ....................................................230 Mycobacterium leprae ..................................................2 32
Mycobacterium asiaticum .............................................230 Mycobacterium lepraemurium .......................................2 32
Mycobacterium aurum ..................................................230 Mycobacterium madagascariense ...................................2 32
Mycobacterium austroafricanum ....................................230 Mycobacterium mageritense ..........................................2 32
Mycobacterium avium subsp. avium ..............................230 Mycobacterium malmoense ...........................................2 32
Mycobacterium avium subsp. paratuberculosis ................230 Mycobacterium marinum ..............................................2 32
Mycobacterium avium subsp. silvaticum ........................230 Mycobacterium microti .................................................2 33
Mycobacterium bohemicum ..........................................230 Mycobacterium monte?orense .......................................2 33
Mycobacterium botniense .............................................230 Mycobacterium moriokaense .........................................2 33
Mycobacterium bovis subsp. bovis .................................230 Mycobacterium mucogenicum .......................................2 33
Mycobacterium bovis subsp. caprae ...............................230 Mycobacterium murale .................................................2 33
Mycobacterium branderi ...............................................230 Mycobacterium neoaurum .............................................2 33
Mycobacterium brumae ................................................230 Mycobacterium nonchromogenicum ...............................2 33
Mycobacterium caprae ..................................................230 Mycobacterium novocastrense .......................................2 33
365
Mycobacterium obuense ...............................................233 Mycoplasma californicum .............................................1 66

Mycobacterium palustre ................................................233 Mycoplasma canadense.................................................1 66
Mycobacterium parafortuitum ........................................233 Mycoplasma canis ........................................................1 66
Mycobacterium paratuberculosis ....................................233 Mycoplasma capricolum subsp. capricolum ....................1 66
Mycobacterium peregrinum ...........................................233 Mycoplasma capricolum subsp. capripneumoniae ............1 66
Mycobacterium phlei ....................................................233 Mycoplasma caviae ......................................................1 66
Mycobacterium porcinum .............................................233 Mycoplasma cavipharyngis ...........................................1 66
Mycobacterium poriferae ..............................................233 Mycoplasma citelli .......................................................1 66
Mycobacterium pulveris ................................................233 Mycoplasma cloacale....................................................1 66
Mycobacterium rhodesiae .............................................233 Mycoplasma collis........................................................1 66
Mycobacterium scrofulaceum ........................................233 Mycoplasma columbinasale ...........................................1 67
Mycobacterium senegalense ..........................................233 Mycoplasma columbinum .............................................1 67
Mycobacterium septicum ..............................................233 Mycoplasma columborale .............................................1 67
Mycobacterium shimoidei .............................................233 Mycoplasma conjunctivae .............................................1 67
Mycobacterium shottsii .................................................233 Mycoplasma corogypsi .................................................1 67
Mycobacterium simiae ..................................................233 Mycoplasma cottewii ....................................................1 67
Mycobacterium smegmatis ............................................234 Mycoplasma cricetuli....................................................1 67
Mycobacterium sphagni ................................................234 Mycoplasma crocodyli ..................................................1 67
Mycobacterium szulgai .................................................234 Mycoplasma cynos .......................................................1 67
Mycobacterium terrae ...................................................234 Mycoplasma dispar .......................................................1 67
Mycobacterium thermoresistibile ...................................234 Mycoplasma edwardii ...................................................1 67
Mycobacterium tokaiense..............................................234 Mycoplasma elephantis .................................................1 67
Mycobacterium triplex ..................................................234 Mycoplasma ellychniae.................................................1 67
Mycobacterium triviale .................................................234 Mycoplasma equigenitalium ..........................................1 67
Mycobacterium tuberculosis subsp. caprae......................230 Mycoplasma equirhinis .................................................1 67
Mycobacterium tuberculosis subsp. tuberculosis ..............230 Mycoplasma falconis ....................................................1 67
Mycobacterium tusciae .................................................234 Mycoplasma fastidiosum ...............................................1 67
Mycobacterium ulcerans ...............................................234 Mycoplasma faucium ....................................................1 67
Mycobacterium vaccae .................................................234 Mycoplasma felifaucium ...............................................1 67
Mycobacterium vanbaalenii ...........................................234 Mycoplasma feliminutum ..............................................1 67
Mycobacterium wolinskyi .............................................234 Mycoplasma felis .........................................................1 67
Mycobacterium xenopi .................................................234 Mycoplasma fermentans ...............................................1 67
Mycoplana................................................................... 55 Mycoplasma ?occulare .................................................1 67
Mycoplana bullata ........................................................ 56 Mycoplasma gallinaceum ..............................................1 67
Mycoplana dimorpha .................................................... 55 Mycoplasma gallinarum ................................................1 67
Mycoplana ramosa ....................................................... 56 Mycoplasma gallisepticum ............................................1 67
Mycoplana segnis ......................................................... 56 Mycoplasma gallopavonis .............................................1 67
Mycoplasma ................................................................166 Mycoplasma gateae ......................................................1 67
Mycoplasma adleri .......................................................166 Mycoplasma genitalium ................................................1 67
Mycoplasma agalactiae .................................................166 Mycoplasma glycophilum .............................................1 67
Mycoplasma agassizii ...................................................166 Mycoplasma gypis........................................................1 67
Mycoplasma alkalescens ...............................................166 Mycoplasma haemocanis ..............................................1 67
Mycoplasma alligatoris .................................................166 Mycoplasma haemofelis ...............................................1 67
Mycoplasma alvi ..........................................................166 Mycoplasma haemomuris .............................................1 67
Mycoplasma anatis .......................................................166 Mycoplasma hominis ....................................................1 67
Mycoplasma anseris .....................................................166 Mycoplasma hyopharyngis ............................................1 68
Mycoplasma arginini ....................................................166 Mycoplasma hyopneumoniae.........................................1 68
Mycoplasma arthritidis .................................................166 Mycoplasma hyorhinis ..................................................1 68
Mycoplasma auris ........................................................166 Mycoplasma hyosynoviae .............................................1 68
Mycoplasma bovigenitalium ..........................................166 Mycoplasma imitans .....................................................1 68
Mycoplasma bovirhinis .................................................166 Mycoplasma indiense ...................................................1 68
Mycoplasma bovis ........................................................166 Mycoplasma iners ........................................................1 68
Mycoplasma bovoculi ...................................................166 Mycoplasma iowae .......................................................1 68
Mycoplasma buccale ....................................................166 Mycoplasma lactucae....................................................1 68
Mycoplasma buteonis ...................................................166 Mycoplasma lagogenitalium ..........................................1 68
366
Mycoplasma leonicaptivi ..............................................168 Myxococcus coralloides ................................................1 35

Mycoplasma leopharyngis .............................................168 Myxococcus disciformis ...............................................1 35
Mycoplasma lipofaciens ................................................168 Myxococcus ? avescens .................................................1 35
Mycoplasma lipophilum ................................................168 Myxococcus fulvus .......................................................1 35
Mycoplasma lucivorax ..................................................168 Myxococcus macrosporus .............................................1 35
Mycoplasma luminosum ...............................................168 Myxococcus stipitatus ...................................................1 35
Mycoplasma maculosum ...............................................168 Myxococcus virescens ..................................................1 35
Mycoplasma melaleucae ...............................................168 Myxococcus xanthus ....................................................1 35
Mycoplasma meleagridis ...............................................168 Myxosarcina ................................................................ 31
Mycoplasma microti .....................................................168 Myxosarcina concinna .................................................. 31
Mycoplasma moatsii .....................................................168 Myxosarcina sp ............................................................ 31
Mycoplasma mobile .....................................................168
Mycoplasma molare .....................................................168 N
Mycoplasma muris .......................................................168 Nannocystaceae .......................................................1 36
Mycoplasma mustelae ...................................................168 Nannocystineae........................................................1 36
Mycoplasma mycoides subsp. capri ...............................166 Nannocystis .................................................................1 36
Mycoplasma mycoides subsp. mycoides .........................166 Nannocystis excedens subsp. aggregans ..........................1 36
Mycoplasma neurolyticum ............................................168 Nannocystis excedens subsp. cinnabarina .......................1 36
Mycoplasma opalescens ................................................168 Nannocystis excedens subsp. excedans ...........................1 36
Mycoplasma orale ........................................................168 Nannocystis excedens subsp. glomerata ..........................1 36
Mycoplasma ovipneumoniae .........................................168 Nannocystis excedens subsp. pulla .................................1 37
Mycoplasma ovis .........................................................168 Nannocystis pusilla.......................................................1 37
Mycoplasma oxoniensis ................................................168 Natrialba ..................................................................... 22
Mycoplasma penetrans..................................................168 Natrialba aegyptia ........................................................ 22
Mycoplasma phocicerebrale ..........................................168 Natrialba asiatica .......................................................... 22
Mycoplasma phocidae ..................................................168 Natrialba chahannaoensis .............................................. 22
Mycoplasma phocirhinis ...............................................168 Natrialba hulunbeirensis ................................................ 22
Mycoplasma pirum .......................................................169 Natrialba magadii ......................................................... 22
Mycoplasma pneumoniae ..............................................169 Natrialba taiwanensis .................................................... 22
Mycoplasma primatum .................................................169 Natrinema ................................................................... 22
Mycoplasma pullorum ..................................................169 Natrinema pallidum ...................................................... 22
Mycoplasma pulmonis ..................................................169 Natrinema pellirubrum .................................................. 22
Mycoplasma putrefaciens ..............................................169 Natrinema versiforme ................................................... 22
Mycoplasma salivarium ................................................169 Natroniella...................................................................1 65
Mycoplasma simbae .....................................................169 Natroniella acetigena ....................................................1 65
Mycoplasma somnilux ..................................................169 Natronincola ................................................................1 48
Mycoplasma spermatophilum ........................................169 Natronincola histidinovorans .........................................1 48
Mycoplasma spumans ...................................................169 Natronobacterium ......................................................... 22
Mycoplasma sturni .......................................................169 Natronobacterium gregoryi............................................ 22
Mycoplasma sualvi .......................................................169 Natronobacterium magadii ............................................ 22
Mycoplasma subdolum .................................................169 Natronobacterium nitratireducens ................................... 22
Mycoplasma suis .........................................................169 Natronobacterium pharaonis .......................................... 22
Mycoplasma synoviae ...................................................169 Natronobacterium vacuolatum ....................................... 22
Mycoplasma testudinis..................................................169 Natronococcus ............................................................. 22
Mycoplasma verecundum ..............................................169 Natronococcus amylolyticus .......................................... 22
Mycoplasma wenyonii .................................................169 Natronococcus occultus ................................................ 22
Mycoplasma yeatsii ......................................................169 Natronomonas .............................................................. 22
Mycoplasmataceae..................................................166 Natronomonas pharaonis ............................................... 22
Mycoplasmatales.....................................................166 Natronorubrum ............................................................ 22
Myroides .....................................................................315 Natronorubrum bangense .............................................. 22
Myroides odoratimimus ................................................315 Natronorubrum tibetense ............................................... 22
Myroides odoratus ........................................................315 Nautilia .......................................................................1 40
Myxococcaceae ........................................................135 Nautilia lithotrophica ...................................................1 40
Myxococcales ...........................................................134 Nautiliaceae .............................................................1 40
Myxococcus ................................................................135 Neisseria ..................................................................... 73
367
Neisseria animalis ........................................................ 73 Nitrosomonas ............................................................... 76

Neisseria canis ............................................................. 73 Nitrosomonas aestuarii .................................................. 76
Neisseria caviae ........................................................... 73 Nitrosomonas communis ............................................... 76
Neisseria cinerea .......................................................... 74 Nitrosomonas europaea ................................................. 76
Neisseria cuniculi ......................................................... 74 Nitrosomonas eutropha ................................................. 76
Neisseria denitri? cans ................................................... 74 Nitrosomonas halophila ................................................ 76
Neisseria dentiae .......................................................... 74 Nitrosomonas marina .................................................... 76
Neisseria elongata subsp. elongata ................................. 74 Nitrosomonas mobilis ................................................... 77
Neisseria elongata subsp. glycolytica ............................. 74 Nitrosomonas nitrosa .................................................... 77
Neisseria elongata subsp. nitroreducens .......................... 74 Nitrosomonas oligotropha ............................................. 77
Neisseria ? ava ............................................................. 74 Nitrosomonas ureae ...................................................... 77
Neisseria ? avescens ...................................................... 74 Nitrosospira ................................................................. 77
Neisseria gonorrhoeae ................................................... 73 Nitrosospira briensis ..................................................... 77
Neisseria iguanae ......................................................... 74 Nitrosospira multiformis ............................................... 77
Neisseria lactamica ....................................................... 74 Nitrosospira tenuis........................................................ 77
Neisseria macacae ........................................................ 74 Nitrospina ...................................................................1 32
Neisseria meningitidis ................................................... 74 Nitrospina gracilis ........................................................1 32
Neisseria mucosa.......................................................... 74 Nitrospinaceae.........................................................1 32
Neisseria ovis .............................................................. 74 Nitrospira................................................................. 29
Neisseria per?ava ......................................................... 74 Nitrospira marina ......................................................... 29
Neisseria polysaccharea ................................................ 74 Nitrospira moscoviensis ................................................ 29
Neisseria sicca ............................................................. 74 Nitrospiraceae ......................................................... 29
Neisseria sub?ava......................................................... 74 Nitrospirales ............................................................ 29
Neisseria weaveri ......................................................... 74 Nocardia .....................................................................2 34
Neisseriaceae............................................................ 73 Nocardia abscessus .......................................................2 34
Neisseriales............................................................... 73 Nocardia africana .........................................................2 34
Neochlamydia ..............................................................302 Nocardia amarae ..........................................................2 34
Neochlamydia hartmannellae .........................................302 Nocardia asiatica ..........................................................2 34
Neorickettsia................................................................ 41 Nocardia asteroides ......................................................2 34
Neorickettsia helminthoeca ........................................... 41 Nocardia autotrophica ...................................................2 34
Neorickettsia risticii...................................................... 41 Nocardia beijingensis....................................................2 34
Neorickettsia sennetsu .................................................. 41 Nocardia brasiliensis.....................................................2 34
Neptunomonas ............................................................. 92 Nocardia brevicatena ....................................................2 35
Neptunomonas naphthovorans ....................................... 92 Nocardia caishijiensis ...................................................2 35
Nesterenkonia ..............................................................211 Nocardia calcarea .........................................................2 35
Nesterenkonia halobia ...................................................211 Nocardia carnea ...........................................................2 35
Nesterenkonia lacusekhoensis .......................................212 Nocardia cellulans ........................................................2 35
Nevskia ....................................................................... 85 Nocardia cerradoensis ...................................................2 35
Nevskia ramosa ............................................................ 85 Nocardia coeliaca .........................................................2 35
Nitratireductor ............................................................. 57 Nocardia corynebacterioides ..........................................2 35
Nitratireductor aquibiodomus ........................................ 57 Nocardia crassostreae ...................................................2 35
Nitrobacter .................................................................. 59 Nocardia cummidelens ..................................................2 35
Nitrobacter alkalicus ..................................................... 59 Nocardia cyriacigeorgica ...............................................2 35
Nitrobacter hamburgensis .............................................. 59 Nocardia farcinica ........................................................2 35
Nitrobacter vulgaris ...................................................... 59 Nocardia ?avorosea ......................................................2 35
Nitrobacter winogradskyi .............................................. 59 Nocardia ?uminea ........................................................2 35
Nitrococcus ................................................................. 82 Nocardia globerula .......................................................2 35
Nitrococcus mobilis ...................................................... 82 Nocardia hydrocarbonoxydans .......................................2 35
Nitrosococcus .............................................................. 80 Nocardia ignorata .........................................................2 35
Nitrosococcus nitrosus .................................................. 80 Nocardia inohanensis ....................................................2 35
Nitrosococcus oceani .................................................... 80 Nocardia mediterranei...................................................2 35
Nitrosolobus ................................................................ 77 Nocardia neocaledoniensis ............................................2 36
Nitrosolobus multiformis .............................................. 77 Nocardia niigatensis .....................................................2 36
Nitrosomonadaceae................................................. 76 Nocardia nova ..............................................................2 36
Nitrosomonadales.................................................... 76 Nocardia orientalis .......................................................2 36
368
Nocardia otitidiscaviarum .............................................236 Nocardiopsis metallicus ................................................2 93

Nocardia paucivorans ...................................................236 Nocardiopsis mutabilis ..................................................2 93
Nocardia petroleophila ..................................................236 Nocardiopsis prasina.....................................................2 93
Nocardia pinensis .........................................................236 Nocardiopsis synnemataformans ....................................2 93
Nocardia pseudobrasiliensis ...........................................236 Nocardiopsis syringae ...................................................2 93
Nocardia pseudovaccinii ...............................................236 Nocardiopsis trehalosi...................................................2 93
Nocardia restricta .........................................................236 Nocardiopsis tropica .....................................................2 93
Nocardia rugosa ...........................................................236 Nocardiopsis umidischolae ...........................................2 93
Nocardia salmonicida ...................................................236 Nocardiopsis xinjiangensis ............................................2 93
Nocardia saturnea .........................................................236 Nodularia .................................................................... 32
Nocardia seriolae..........................................................236 Nodularia harveyana ..................................................... 33
Nocardia soli ...............................................................236 Nodularia spumigena .................................................... 33
Nocardia sulphurea .......................................................236 Nonomuraea ................................................................2 90
Nocardia tenerifensis ....................................................236 Nonomuraea africana ....................................................2 90
Nocardia transvalensis ..................................................236 Nonomuraea angiospora................................................2 90
Nocardia uniformis .......................................................236 Nonomuraea dietziae ....................................................2 90
Nocardia vaccinii .........................................................237 Nonomuraea fastidiosa ..................................................2 90
Nocardia veterana.........................................................237 Nonomuraea ferruginea.................................................2 90
Nocardia vinacea .........................................................237 Nonomuraea ?exuosa ...................................................2 90
Nocardia yamanashiensis ..............................................237 Nonomuraea helvata .....................................................2 90
Nocardiaceae ...........................................................234 Nonomuraea longicatena ...............................................2 90
Nocardioidaceae......................................................244 Nonomuraea polychroma ..............................................2 90
Nocardioides ................................................................244 Nonomuraea pusilla ......................................................2 90
Nocardioides albus .......................................................244 Nonomuraea recticatena ................................................2 91
Nocardioides aquaticus .................................................245 Nonomuraea roseola .....................................................2 91
Nocardioides aquiterrae ................................................245 Nonomuraea roseoviolacea subsp. carminata ...................2 91
Nocardioides fastidiosus ...............................................245 Nonomuraea roseoviolacea subsp. roseoviolacea .............2 91
Nocardioides jensenii....................................................245 Nonomuraea rubra ........................................................2 91
Nocardioides luteus ......................................................245 Nonomuraea salmonea ..................................................2 91
Nocardioides nitrophenolicus.........................................245 Nonomuraea spiralis .....................................................2 91
Nocardioides plantarum ................................................245 Nonomuraea turkmeniaca ..............................................2 91
Nocardioides pyridinolyticus .........................................245 Nostoc ........................................................................ 33
Nocardioides simplex ...................................................245 Nostoc commune.......................................................... 33
Nocardiopsaceae......................................................292 Nostoc muscorum......................................................... 33
Nocardiopsis ................................................................292 Nostoc punctiforme ...................................................... 33
Nocardiopsis aegyptia ...................................................292 Nostochopsis ............................................................... 33
Nocardiopsis africana ...................................................292 Nostochopsis sp ........................................................... 33
Nocardiopsis alba subsp. alba ........................................292 Nostocoidia .................................................................2 16
Nocardiopsis alba subsp. prasina....................................292 Nostocoidia limicola .....................................................2 16
Nocardiopsis alborubida ................................................292 Novosphingobium ........................................................ 48
Nocardiopsis alkaliphila ................................................292 Novosphingobium aromaticivorans ................................ 49
Nocardiopsis antarctica .................................................292 Novosphingobium capsulatum ....................................... 48
Nocardiopsis coeruleofusca ...........................................292 Novosphingobium hassiacum ........................................ 49
Nocardiopsis composta ................................................292 Novosphingobium rosa ................................................. 49
Nocardiopsis dassonvillei subsp. albirubida ....................292 Novosphingobium stygium ............................................ 49
Nocardiopsis dassonvillei subsp. dassonvillei ..................292 Novosphingobium subarcticum ...................................... 49
Nocardiopsis dassonvillei subsp. prasina.........................292 Novosphingobium subterraneum .................................... 49
Nocardiopsis exhalans ..................................................292 Novosphingobium tardaugens ........................................ 49
Nocardiopsis ? ava ........................................................292
Nocardiopsis halophila..................................................292 O
Nocardiopsis halotolerans .............................................292 Obesumbacterium ........................................................1 19
Nocardiopsis kunsanensis ..............................................292 Obesumbacterium proteus .............................................1 19
Nocardiopsis listeri .......................................................293 Oceanicaulis ................................................................ 44
Nocardiopsis longispora ................................................293 Oceanicaulis alexandrii ................................................. 44
Nocardiopsis lucentensis ...............................................293 Oceanimonas ...............................................................1 13
369
Oceanimonas baumannii ...............................................113 Oligella ....................................................................... 68

Oceanimonas doudorof? i ..............................................113 Oligella ureolytica ........................................................ 68
Oceanisphaera..............................................................113 Oligella urethralis ......................................................... 68
Oceanisphaera litoralis ..................................................113 Oligotropha ................................................................. 59
Oceanithermus ............................................................. 28 Oligotropha carboxidovorans ......................................... 59
Oceanithermus profundus .............................................. 28 Olsenella .....................................................................2 06
Oceanobacillus ............................................................180 Olsenella profusa..........................................................2 06
Oceanobacillus iheyensis ..............................................180 Olsenella uli ................................................................2 06
Oceanobacter .............................................................. 92 Opitutaceae..............................................................3 22
Oceanobacter kriegii .................................................... 92 Opitutus ......................................................................3 22
Oceanospirillaceae .................................................. 90 Opitutus terrae .............................................................3 22
Oceanospirillales ..................................................... 90 Orenia .........................................................................1 65
Oceanospirillum ........................................................... 90 Orenia marismortui.......................................................1 65
Oceanospirillum beijerinckii subsp. beijerinckii .............. 90 Orenia salinaria ............................................................1 65
Oceanospirillum beijerinckii subsp. pelagicum ................ 91 Orenia sivashensis ........................................................1 65
Oceanospirillum commune ............................................ 91 Orientia ....................................................................... 40
Oceanospirillum hiroshimense ....................................... 91 Orientia tsutsugamushi .................................................. 40
Oceanospirillum jannaschii ........................................... 91 Ornithinicoccus ............................................................2 16
Oceanospirillum japonicum ........................................... 91 Ornithinicoccus hortensis ..............................................2 16
Oceanospirillum kriegii................................................. 91 Ornithinimicrobium ......................................................2 16
Oceanospirillum linum.................................................. 90 Ornithinimicrobium humiphilum ....................................2 16
Oceanospirillum maris subsp. hiroshimense .................... 91 Ornithobacterium .........................................................3 15
Oceanospirillum maris subsp. maris ............................... 91 Ornithobacterium rhinotracheale ....................................3 15
Oceanospirillum maris subsp. williamsae........................ 91 Oscillatoria .................................................................. 32
Oceanospirillum minutulum .......................................... 91 Oscillatoria acuminata .................................................. 32
Oceanospirillum multiglobuliferum ................................ 91 Oscillatoria agardhii ..................................................... 32
Oceanospirillum pelagicum ........................................... 91 Oscillatoria nigro-viridis ............................................... 32
Oceanospirillum pusillum ............................................. 91 Oscillatoria princeps ..................................................... 32
Oceanospirillum vagum ................................................ 91 Oscillatoria prolifera ..................................................... 32
Ochrobactrum .............................................................. 56 Oscillatoria sancta ........................................................ 32
Ochrobactrum anthropi ................................................. 56 Oscillatoria tenuis......................................................... 32
Ochrobactrum gallinifaecis ............................................ 56 Oscillochloridaceae ................................................. 28
Ochrobactrum grignonense ............................................ 56 Oscillochloris ............................................................... 28
Ochrobactrum intermedium ........................................... 56 Oscillochloris chrysea ................................................... 28
Ochrobactrum tritici ..................................................... 56 Oscillochloris trichoides ................................................ 28
Octadecabacter ............................................................. 44 Oscillospira .................................................................2 04
Octadecabacter antarcticus ............................................ 44 Oscillospira guilliermondii ............................................2 04
Octadecabacter arcticus ................................................. 44 Ottowia ....................................................................... 70
Odyssella .................................................................... 42 Ottowia thiooxydans ..................................................... 71
Odyssella thessalonicensis ............................................. 42 Oxalicibacterium .......................................................... 67
Oenococcus .................................................................199 Oxalicibacterium ?avum ............................................... 67
Oenococcus oeni ..........................................................199 Oxalobacter ................................................................. 66
Oerskovia ....................................................................214 Oxalobacter formigenes ................................................ 66
Oerskovia enterophila ...................................................215 Oxalobacter vibrioformis .............................................. 66
Oerskovia jenensis .......................................................215 Oxalobacteraceae .................................................... 66
Oerskovia paurometabola .............................................215 Oxalophagus ................................................................1 85
Oerskovia turbata .........................................................214 Oxalophagus oxalicus ...................................................1 85
Oerskovia xanthineolytica .............................................215 Oxobacter ....................................................................1 48
Okibacterium ..............................................................222 Oxobacter pfennigii ......................................................1 48
Okibacterium fritillariae ...............................................222
Oleiphilaceae ........................................................... 94 P
Oleiphilus ................................................................... 94 Paenibacillaceae ......................................................1 82
Oleiphilus messinensis ................................................. 94 Paenibacillus................................................................1 82
Oleispira ..................................................................... 92 Paenibacillus agarexedens .............................................1 82
Oleispira antarctica ....................................................... 92 Paenibacillus agaridevorans ...........................................1 82
370
Paenibacillus alginolyticus ............................................182 Pannonibacter phragmitetus ........................................... 44

Paenibacillus alvei ........................................................182 Pantoea .......................................................................1 19
Paenibacillus amylolyticus ............................................182 Pantoea agglomerans ....................................................1 19
Paenibacillus apiarius ...................................................182 Pantoea ananatis ...........................................................1 19
Paenibacillus azoreducens .............................................182 Pantoea citrea ..............................................................1 19
Paenibacillus azoto?xans ..............................................182 Pantoea dispersa ...........................................................1 19
Paenibacillus borealis ...................................................182 Pantoea punctata ..........................................................1 19
Paenibacillus brasilensis ................................................182 Pantoea stewartii subsp. indologenes ..............................1 19
Paenibacillus campinasensis ..........................................182 Pantoea stewartii subsp. stewartii ...................................1 19
Paenibacillus chibensis .................................................182 Pantoea terrea ..............................................................1 19
Paenibacillus chinjuensis ..............................................182 Papillibacter.................................................................1 59
Paenibacillus chondroitinus ...........................................182 Papillibacter cinnamivorans ...........................................1 59
Paenibacillus curdlanolyticus .........................................182 Parachlamydia .............................................................3 02
Paenibacillus daejeonensis ............................................182 Parachlamydia acanthamoebae.......................................3 02
Paenibacillus dendritiformis ..........................................182 Parachlamydiaceae .................................................3 02
Paenibacillus durus .......................................................182 Paracoccus................................................................... 44
Paenibacillus favisporus ................................................182 Paracoccus alcaliphilus ................................................. 44
Paenibacillus glucanolyticus ..........................................182 Paracoccus alkenifer ..................................................... 44
Paenibacillus glycanilyticus ...........................................182 Paracoccus aminophilus ................................................ 44
Paenibacillus gordonae .................................................183 Paracoccus aminovorans ............................................... 44
Paenibacillus graminis .................................................183 Paracoccus carotinifaciens ............................................. 44
Paenibacillus granivorans ..............................................183 Paracoccus denitri?cans ................................................ 44
Paenibacillus illinoisensis..............................................183 Paracoccus halodenitri?cans .......................................... 44
Paenibacillus jamilae ....................................................183 Paracoccus kocurii........................................................ 44
Paenibacillus kobensis ..................................................183 Paracoccus kondratievae ............................................... 44
Paenibacillus koleovorans .............................................183 Paracoccus marcusii ..................................................... 44
Paenibacillus koreensis .................................................183 Paracoccus methylutens ................................................ 44
Paenibacillus kribbensis ................................................183 Paracoccus pantotrophus ............................................... 44
Paenibacillus larvae subsp. larvae ..................................183 Paracoccus seriniphilus ................................................. 45
Paenibacillus larvae subsp. pulvifaciens..........................183 Paracoccus solventivorans ............................................. 45
Paenibacillus lautus ......................................................183 Paracoccus thiocyanatus ................................................ 45
Paenibacillus lentimorbus..............................................183 Paracoccus versutus ...................................................... 45
Paenibacillus macerans .................................................183 Paracoccus yeei............................................................ 45
Paenibacillus macquariensis ..........................................183 Paracoccus zeaxanthinifaciens ....................................... 45
Paenibacillus naphthalenovorans ...................................183 Paracraurococcus ......................................................... 39
Paenibacillus nematophilus ...........................................183 Paracraurococcus ruber ................................................. 39
Paenibacillus odorifer ..................................................183 Paralactobacillus ..........................................................1 95
Paenibacillus pabuli......................................................183 Paralactobacillus selangorensis ......................................1 95
Paenibacillus peoriae ....................................................183 Paraliobacillus .............................................................1 80
Paenibacillus polymyxa ................................................182 Paraliobacillus ryukyuensis ...........................................1 80
Paenibacillus popilliae ..................................................183 Parascardovia ..............................................................3 00
Paenibacillus pulvifaciens .............................................184 Parascardovia denticolens .............................................3 00
Paenibacillus terrae .......................................................184 Parasporobacterium ......................................................1 48
Paenibacillus thiaminolyticus.........................................184 Parasporobacterium paucivorans ....................................1 48
Paenibacillus turicensis .................................................184 Parvularcula................................................................. 63
Paenibacillus validus ....................................................184 Parvularcula bermudensis .............................................. 63
Palaeococcus ............................................................... 23 Parvularculaceae..................................................... 63
Palaeococcus ferrophilus ............................................... 23 Parvularculales........................................................ 63
Pandoraea .................................................................... 65 Pasteurella ...................................................................1 24
Pandoraea apista........................................................... 65 Pasteurella aerogenes ....................................................1 24
Pandoraea norimbergensis ............................................. 65 Pasteurella anatis ..........................................................1 25
Pandoraea pnomenusa ................................................... 65 Pasteurella avium .........................................................1 25
Pandoraea pulmonicola ................................................. 65 Pasteurella bettyae ........................................................1 25
Pandoraea sputorum ..................................................... 65 Pasteurella caballi.........................................................1 25
Pannonibacter .............................................................. 44 Pasteurella canis ...........................................................1 25
371
Pasteurella dagmatis .....................................................125 Pedobacter africanus .....................................................3 16

Pasteurella gallicida ......................................................125 Pedobacter heparinus ....................................................3 16
Pasteurella gallinarum ...................................................125 Pedobacter piscium .......................................................3 17
Pasteurella granulomatis ...............................................125 Pedobacter saltans ........................................................3 17
Pasteurella haemolytica.................................................125 Pedomicrobium ............................................................ 61
Pasteurella langaaensis..................................................125 Pedomicrobium americanum ......................................... 61
Pasteurella lymphangitidis .............................................125 Pedomicrobium australicum .......................................... 61
Pasteurella mairii..........................................................125 Pedomicrobium ferrugineum ......................................... 61
Pasteurella multocida subsp. gallicida ............................124 Pedomicrobium manganicum......................................... 61
Pasteurella multocida subsp. multocida...........................124 Pelczaria .....................................................................3 01
Pasteurella multocida subsp. septica ...............................124 Pelczaria aurantia .........................................................3 01
Pasteurella pneumotropica .............................................125 Pelistega ...................................................................... 68
Pasteurella skyensis .....................................................125 Pelistega europaea ........................................................ 68
Pasteurella stomatis ......................................................125 Pelobacter ...................................................................1 32
Pasteurella testudinis ....................................................125 Pelobacter acetylenicus .................................................1 32
Pasteurella trehalosi......................................................125 Pelobacter acidigallici ...................................................1 32
Pasteurella ureae ..........................................................125 Pelobacter carbinolicus .................................................1 32
Pasteurella volantium ....................................................125 Pelobacter massiliensis .................................................1 32
Pasteurellaceae ........................................................124 Pelobacter propionicus ..................................................1 33
Pasteurellales ...........................................................124 Pelobacter venetianus ...................................................1 33
Pasteuria .....................................................................181 Pelodictyon .................................................................. 34
Pasteuria nishizawae .....................................................181 Pelodictyon clathratiforme ............................................ 34
Pasteuria penetrans .......................................................181 Pelodictyon luteolum .................................................... 34
Pasteuria ramosa ..........................................................181 Pelodictyon phaeoclathratiforme .................................... 34
Pasteuria thornei...........................................................181 Pelodictyon phaeum ..................................................... 34
Paucimonas ................................................................. 65 Pelospora ....................................................................1 61
Paucimonas lemoignei .................................................. 65 Pelospora glutarica .......................................................1 61
Pectinatus ....................................................................159 Pelotomaculum ............................................................1 57
Pectinatus cerevisiiphilus ..............................................159 Pelotomaculum thermopropionicum ...............................1 57
Pectinatus frisingensis ...................................................159 Peptococcaceae ........................................................1 55
Pectobacterium ............................................................119 Peptococcus .................................................................1 55
Pectobacterium atrosepticum .........................................120 Peptococcus asaccharolyticus ........................................1 55
Pectobacterium betavasulorum .......................................120 Peptococcus glycinophilus ............................................1 55
Pectobacterium cacticida ...............................................120 Peptococcus heliotrinreducens .......................................1 55
Pectobacterium carnegieana...........................................120 Peptococcus indolicus ...................................................1 55
Pectobacterium carotovorum subsp. atrosepticum ............119 Peptococcus magnus .....................................................1 56
Pectobacterium carotovorum subsp. betavasculorum ........119 Peptococcus niger.........................................................1 55
Pectobacterium carotovorum subsp. carotovorum ............119 Peptococcus prevotii.....................................................1 56
Pectobacterium carotovorum subsp. odoriferum ..............120 Peptococcus saccharolyticus ..........................................1 56
Pectobacterium carotovorum subsp. wasabiae .................120 Peptoniphilus ...............................................................1 52
Pectobacterium chrysanthemi ........................................120 Peptoniphilus asaccharolyticus .......................................1 52
Pectobacterium cypripedii .............................................120 Peptoniphilus harei .......................................................1 52
Pectobacterium rhapontici .............................................120 Peptoniphilus indolicus .................................................1 52
Pectobacterium wasabiae ..............................................120 Peptoniphilus ivorii ......................................................1 52
Pediococcus .................................................................195 Peptoniphilus lacrimalis ................................................1 52
Pediococcus acidilactici ................................................195 Peptostreptococcaceae ............................................1 50
Pediococcus claussenii ..................................................195 Peptostreptococcus .......................................................1 50
Pediococcus damnosus..................................................195 Peptostreptococcus anaerobius .......................................1 50
Pediococcus dextrinicus ................................................195 Peptostreptococcus asaccharolyticus ...............................1 50
Pediococcus halophilus .................................................195 Peptostreptococcus barnesae ..........................................1 50
Pediococcus inopinatus .................................................195 Peptostreptococcus harei ...............................................1 50
Pediococcus parvulus ....................................................195 Peptostreptococcus heliotrinreducens .............................1 50
Pediococcus pentosaceus ...............................................195 Peptostreptococcus hydrogenalis ....................................1 50
Pediococcus urinaeequi .................................................195 Peptostreptococcus indolicus .........................................1 51
Pedobacter ...................................................................316 Peptostreptococcus ivorii ..............................................1 51
372
Peptostreptococcus lacrimalis ........................................151 Phyllobacterium rubiacearum ........................................ 56

Peptostreptococcus lactolyticus ......................................151 Phytoplasma ................................................................1 72
Peptostreptococcus magnus ...........................................151 Phytoplasma ulmi.........................................................1 72
Peptostreptococcus micros ............................................151 Picrophilaceae ......................................................... 22
Peptostreptococcus octavius ..........................................151 Picrophilus .................................................................. 22
Peptostreptococcus parvulus ..........................................151 Picrophilus oshimae ...................................................... 23
Peptostreptococcus prevotii ...........................................151 Picrophilus torridus ...................................................... 23
Peptostreptococcus productus ........................................151 Pigmentiphaga ............................................................. 69
Peptostreptococcus tetradius ..........................................151 Pigmentiphaga kullae.................................................... 69
Peptostreptococcus vaginalis .........................................151 Pilimelia ......................................................................2 43
Persephonella ............................................................... 25 Pilimelia anulata...........................................................2 43
Persephonella guaymasensis ......................................... 25 Pilimelia columellifera subsp. columellifera ....................2 43
Persephonella hydrogeniphila ........................................ 25 Pilimelia columellifera subsp. pallida .............................2 43
Persephonella marina ................................................... 25 Pilimelia terevasa .........................................................2 43
Persicobacter ...............................................................319 Pillotina ......................................................................3 04
Persicobacter dif? uens ..................................................320 Pillotina calotermitidis ..................................................3 04
Petrotoga ..................................................................... 26 Pirellula ......................................................................3 01
Petrotoga mexicana ...................................................... 26 Pirellula marina ............................................................3 01
Petrotoga miotherma..................................................... 26 Pirellula staleyi ............................................................3 01
Petrotoga mobilis ......................................................... 26 Piscirickettsia............................................................... 86
Petrotoga olearia ......................................................... 26 Piscirickettsia salmonis ................................................. 86
Petrotoga sibirica.......................................................... 26 Piscirickettsiaceae ................................................... 86
Pfennigia ..................................................................... 80 Planctomyces ...............................................................3 01
Pfennigia purpurea ....................................................... 80 Planctomyces beke? i ....................................................3 01
Phaeospirillum ............................................................. 35 Planctomyces brasiliensis ..............................................3 01
Phaeospirillum fulvum .................................................. 35 Planctomyces guttaeformis ............................................3 01
Phaeospirillum molischianum ........................................ 35 Planctomyces limnophilus .............................................3 01
Phascolarctobacterium ..................................................159 Planctomyces maris ......................................................3 01
Phascolarctobacterium faecium ......................................159 Planctomyces stranskae.................................................3 01
Phenylobacterium ......................................................... 51 Planctomycetaceae ..................................................3 01
Phenylobacterium immobile .......................................... 51 Planctomycetacia.....................................................3 01
Phlomobacter ...............................................................120 Planctomycetales.....................................................3 01
Phlomobacter fragariae .................................................120 Planctomycetes ........................................................3 01
Phocoenobacter ............................................................127 Planktothrix ................................................................. 32
Phocoenobacter uteri ....................................................127 Planktothrix sp ............................................................. 32
Phororhabdus asymbiotica .............................................120 Planobispora ................................................................2 91
Photobacterium ............................................................111 Planobispora longispora ................................................2 91
Photobacterium angustum .............................................111 Planobispora rosea........................................................2 91
Photobacterium damselae subsp. damselae......................111 Planococcaceae ........................................................1 85
Photobacterium damselae subsp. piscicida ......................111 Planococcus .................................................................1 85
Photobacterium ? scheri.................................................111 Planococcus alkanoclasticus ..........................................1 85
Photobacterium histaminum ..........................................112 Planococcus antarcticus ................................................1 85
Photobacterium iliopiscarium ........................................112 Planococcus citreus ......................................................1 85
Photobacterium leiognathi .............................................112 Planococcus halophilus .................................................1 85
Photobacterium logei ....................................................112 Planococcus kocurii ......................................................1 85
Photobacterium phosphoreum ........................................111 Planococcus maitriensis ................................................1 85
Photobacterium profundum ...........................................112 Planococcus maritimus .................................................1 85
Photorhabdus ...............................................................120 Planococcus mcmeekinii ...............................................1 85
Photorhabdus luminescens subsp. akhurstii .....................120 Planococcus okeanokoites .............................................1 85
Photorhabdus luminescens subsp. laumondii ...................120 Planococcus psychrophilus ............................................1 85
Photorhabdus luminescens subsp. luminescens ................120 Planococcus ri?etoensis ................................................1 85
Photorhabdus temperata ................................................120 Planomicrobium ...........................................................1 85
Phyllobacteriaceae .................................................. 56 Planomicrobium koreense .............................................1 86
Phyllobacterium ........................................................... 56 Planomicrobium mcmeekinii .........................................1 86
Phyllobacterium myrsinacearum .................................... 56 Planomicrobium okeanokoites .......................................1 86
373
Planomonospora ...........................................................291 Porphyromonas gingivicanis ..........................................3 09

Planomonospora alba ....................................................291 Porphyromonas gulae ...................................................3 09
Planomonospora parontospora subsp. antibiotica .............291 Porphyromonas levii.....................................................3 09
Planomonospora parontospora subsp. parontospora..........291 Porphyromonas macacae ...............................................3 09
Planomonospora sphaerica ............................................291 Porphyromonas salivosa................................................3 09
Planomonospora venezuelensis ......................................291 Pragia .........................................................................1 20
Planopolyspora ............................................................291 Pragia fontium .............................................................1 20
Planopolyspora crispa ...................................................291 Prauserella ...................................................................2 49
Planotetraspora ............................................................291 Prauserella rugosa ........................................................2 49
Planotetraspora mira .....................................................291 Prevotella ....................................................................3 10
Plantibacter..................................................................222 Prevotella albensis ........................................................3 10
Plantibacter ?avus ........................................................222 Prevotella bivia ............................................................3 10
Plesiocystis ..................................................................137 Prevotella brevis...........................................................3 10
Plesiocystis paci?ca ......................................................137 Prevotella bryantii ........................................................3 10
Plesiomonas.................................................................120 Prevotella buccae .........................................................3 10
Plesiomonas shigelloides ...............................................120 Prevotella buccalis........................................................3 10
Pleurocapsa ................................................................. 31 Prevotella corporis........................................................3 10
Polaribacter .................................................................315 Prevotella dentalis ........................................................3 10
Polaribacter ? lamentus..................................................315 Prevotella denticola ......................................................3 10
Polaribacter franzmannii ...............................................315 Prevotella disiens .........................................................3 10
Polaribacter glomeratus .................................................315 Prevotella enoeca .........................................................3 10
Polaribacter irgensii ......................................................315 Prevotella heparinolytica ...............................................3 10
Polaromonas ................................................................ 71 Prevotella intermedia ....................................................3 10
Polaromonas naphthalenivorans ..................................... 71 Prevotella loescheii.......................................................3 10
Polaromonas vacuolata ................................................. 71 Prevotella melaninogenica.............................................3 10
Polyangiaceae ..........................................................135 Prevotella nigrescens ....................................................3 10
Polyangium .................................................................135 Prevotella oralis ...........................................................3 10
Polyangium aureum ......................................................135 Prevotella oris ..............................................................3 11
Polyangium cellulosum .................................................136 Prevotella oulorum .......................................................3 11
Polyangium fumosum ...................................................136 Prevotella pallens .........................................................3 11
Polyangium luteum .......................................................136 Prevotella ruminicola subsp. brevis ................................3 11
Polyangium minor ........................................................136 Prevotella ruminicola subsp. ruminicola .........................3 11
Polyangium parasiticum ................................................136 Prevotella tannerae .......................................................3 11
Polyangium rugiseptum ................................................136 Prevotella veroralis .......................................................3 11
Polyangium sorediatum .................................................136 Prevotella zoogleoformans ............................................3 11
Polyangium spumosum .................................................136 Prevotellaceae ..........................................................3 10
Polyangium vitellinum ..................................................135 Procabacter .................................................................. 79
Polynucleobacter .......................................................... 65 Procabacter acanthamoebae ........................................... 79
Polynucleobacter necessarius ......................................... 65 Procabacteriaceae ................................................... 79
Porphyrobacter ............................................................. 49 Procabacteriales ...................................................... 78
Porphyrobacter cryptus ................................................. 49 Prochlorococcus ........................................................... 31
Porphyrobacter neustonensis.......................................... 49 Prochlorococcus marinus subsp. marinus ........................ 31
Porphyrobacter sanguineus ............................................ 49 Prochlorococcus marinus subsp. pastoris ........................ 31
Porphyrobacter tepidarius .............................................. 49 Prochloron ................................................................... 31
Porphyromonadaceae .............................................309 Prochloron didemni ...................................................... 31
Porphyromonas ............................................................309 Prochlorothrix .............................................................. 32
Porphyromonas asaccharolytica .....................................309 Prochlorothrix hollandica .............................................. 32
Porphyromonas cangingivalis ........................................309 Prolinoborus ................................................................ 76
Porphyromonas canoris .................................................309 Prolinoborus fasciculus ................................................. 76
Porphyromonas cansulci ...............................................309 Promicromonospora .....................................................2 23
Porphyromonas catoniae ...............................................309 Promicromonospora citrea.............................................2 23
Porphyromonas circumdentaria ......................................309 Promicromonospora enterophila.....................................2 23
Porphyromonas crevioricanis .........................................309 Promicromonospora pachnodae .....................................2 23
Porphyromonas endodontalis .........................................309 Promicromonospora sukumoe ........................................2 23
Porphyromonas gingivalis .............................................309 Promicromonosporaceae........................................2 23
374
Propionibacter.............................................................. 78 Proteus myxofaciens .....................................................1 21

Propionibacter pelophilus .............................................. 78 Proteus penneri ............................................................1 21
Propionibacteriaceae ..............................................243 Proteus rettgeri.............................................................1 21
Propionibacterineae................................................243 Proteus vulgaris ...........................................................1 20
Propionibacterium ........................................................243 Protomonas .................................................................. 63
Propionibacterium acidipropionici..................................244 Protomonas extorquens ................................................. 63
Propionibacterium acnes ...............................................244 Providencia..................................................................1 21
Propionibacterium australiense ......................................244 Providencia alcalifaciens ...............................................1 21
Propionibacterium avidum ............................................244 Providencia friedericiana ...............................................1 21
Propionibacterium cyclohexanicum ................................244 Providencia heimbachae................................................1 21
Propionibacterium freudenreichii subsp. freudenreichii ....243 Providencia rettgeri ......................................................1 21
Propionibacterium freudenreichii subsp. shermanii ..........243 Providencia rustigianii ..................................................1 21
Propionibacterium granulosum ......................................244 Providencia stuartii .......................................................1 21
Propionibacterium innocuum .........................................244 Pseudaminobacter ........................................................ 57
Propionibacterium jensenii ............................................244 Pseudaminobacter de?uvii............................................. 57
Propionibacterium lymphophilum ..................................244 Pseudaminobacter salicylatoxidans................................. 57
Propionibacterium microaerophilum ...............................244 Pseudanabaena ............................................................. 32
Propionibacterium propionicum .....................................244 Pseudanabaena tenuis ................................................... 32
Propionibacterium thoenii .............................................244 Pseudoalteromonas .......................................................1 06
Propionicimonas ..........................................................246 Pseudoalteromonas agarivorans .....................................1 06
Propionicimonas paludicola ...........................................246 Pseudoalteromonas antarctica ........................................1 06
Propioniferax ...............................................................244 Pseudoalteromonas atlantica ..........................................1 06
Propioniferax innocua ...................................................244 Pseudoalteromonas aurantia...........................................1 06
Propionigenium ............................................................321 Pseudoalteromonas bacteriolytica...................................1 06
Propionigenium maris ...................................................321 Pseudoalteromonas carrageenovora ................................1 06
Propionigenium modestum ............................................321 Pseudoalteromonas citrea ..............................................1 07
Propionimicrobium .......................................................244 Pseudoalteromonas denitri?cans ....................................1 07
Propionimicrobium lymphophilum .................................244 Pseudoalteromonas distincta ..........................................1 07
Propionispira ...............................................................159 Pseudoalteromonas elyakovii.........................................1 07
Propionispira arboris.....................................................159 Pseudoalteromonas espejiana.........................................1 07
Propionispora ...............................................................159 Pseudoalteromonas ?avipulchra ....................................1 07
Propionispora vibrioides ...............................................159 Pseudoalteromonas haloplanktis subsp. haloplanktis ........1 06
Propionivibrio .............................................................. 78 Pseudoalteromonas haloplanktis subsp. tetraodonis ..........1 06
Propionivibrio dicarboxylicus ........................................ 78 Pseudoalteromonas issachenkonii ..................................1 07
Propionivibrio limicola ................................................ 78 Pseudoalteromonas luteoviolacea ...................................1 07
Propionivibrio pelophilus ............................................. 78 Pseudoalteromonas maricaloris .....................................1 07
Prosthecobacter ............................................................322 Pseudoalteromonas mariniglutinosa................................1 07
Prosthecobacter debontii ...............................................322 Pseudoalteromonas nigrifaciens .....................................1 07
Prosthecobacter dejongeii..............................................322 Pseudoalteromonas paragorgicola ..................................1 07
Prosthecobacter fusiformis ............................................322 Pseudoalteromonas peptidolytica ...................................1 07
Prosthecobacter vanneervenii.........................................322 Pseudoalteromonas phenolica ........................................1 07
Prosthecochloris ........................................................... 34 Pseudoalteromonas piscicida .........................................1 07
Prosthecochloris aestuarii .............................................. 34 Pseudoalteromonas prydzensis .......................................1 07
Prosthecochloris vibrioformis ........................................ 34 Pseudoalteromonas rubra ..............................................1 07
Prosthecomicrobium ..................................................... 61 Pseudoalteromonas ruthenica ........................................1 07
Prosthecomicrobium enhydrum...................................... 61 Pseudoalteromonas sagamiensis .....................................1 07
Prosthecomicrobium hirschii ......................................... 61 Pseudoalteromonas tetraodonis ......................................1 07
Prosthecomicrobium litoralum ....................................... 61 Pseudoalteromonas translucida ......................................1 07
Prosthecomicrobium pneumaticum ................................. 61 Pseudoalteromonas tunicata ...........................................1 07
Proteobacteria ......................................................... 34 Pseudoalteromonas ulvae ..............................................1 07
Proteus ........................................................................120 Pseudoalteromonas undina ............................................1 07
Proteus hauseri.............................................................121 Pseudobutyrivibrio .......................................................1 49
Proteus inconstans ........................................................121 Pseudobutyrivibrio ruminis ...........................................1 49
Proteus mirabilis ..........................................................121 Pseudobutyrivibrio xylanivorans ....................................1 49
Proteus morganii ..........................................................121 Pseudocaedibacter ........................................................ 42
375
Pseudocaedibacter conjugatus ........................................ 42 Pseudomonas ?ava ....................................................... 97

Pseudocaedibacter falsus ............................................... 42 Pseudomonas ?avescens ............................................... 97
Pseudocaedibacter minutus ............................................ 42 Pseudomonas ?ectens ................................................... 97
Pseudomonadaceae ................................................. 94 Pseudomonas ?uorescens .............................................. 97
Pseudomonadales .................................................... 94 Pseudomonas fragi ....................................................... 97
Pseudomonas ............................................................... 94 Pseudomonas frederiksbergensis .................................... 97
Pseudomonas abietaniphila ............................................ 95 Pseudomonas fulva ....................................................... 97
Pseudomonas acidovorans ............................................. 95 Pseudomonas fuscovaginae ........................................... 97
Pseudomonas aeruginosa ............................................... 95 Pseudomonas gelidicola ................................................ 97
Pseudomonas agarici .................................................... 95 Pseudomonas geniculata ............................................... 97
Pseudomonas alcaligenes .............................................. 95 Pseudomonas gessardii ................................................. 97
Pseudomonas alcaliphila ............................................... 95 Pseudomonas gladioli ................................................... 97
Pseudomonas aminovorans ............................................ 95 Pseudomonas glathei .................................................... 97
Pseudomonas amygdali ................................................. 95 Pseudomonas glumae.................................................... 97
Pseudomonas andropogonis ........................................... 95 Pseudomonas graminis .................................................. 97
Pseudomonas anguilliseptica ......................................... 95 Pseudomonas grimontii ................................................. 97
Pseudomonas antimicrobica........................................... 95 Pseudomonas halophila ................................................. 97
Pseudomonas asplenii ................................................... 95 Pseudomonas hibiscicola ............................................... 97
Pseudomonas aurantiaca ............................................... 95 Pseudomonas huttiensis ................................................ 97
Pseudomonas aureofaciens ............................................ 95 Pseudomonas indica ..................................................... 97
Pseudomonas avellanae................................................. 95 Pseudomonas indigofera ............................................... 97
Pseudomonas avenae subsp. avenae ............................... 95 Pseudomonas iners ....................................................... 98
Pseudomonas avenae subsp. citrulli................................ 95 Pseudomonas jessenii ................................................... 98
Pseudomonas avenae subsp. konjaci ............................... 95 Pseudomonas jinjuensis ................................................ 98
Pseudomonas azotoformans ........................................... 95 Pseudomonas kilonensis ................................................ 98
Pseudomonas balearica ................................................. 95 Pseudomonas koreensis................................................. 98
Pseudomonas beijerinckii .............................................. 95 Pseudomonas lanceolata................................................ 98
Pseudomonas beteli ...................................................... 96 Pseudomonas lemoignei ................................................ 98
Pseudomonas boreopolis ............................................... 96 Pseudomonas libanensis ................................................ 98
Pseudomonas brassicacearum ........................................ 96 Pseudomonas lini ........................................................ 98
Pseudomonas brenneri .................................................. 96 Pseudomonas lundensis................................................. 98
Pseudomonas cannabina ................................................ 96 Pseudomonas luteola .................................................... 98
Pseudomonas carboxydohydrogena ................................ 96 Pseudomonas mallei ..................................................... 98
Pseudomonas caricapapayae .......................................... 96 Pseudomonas maltophilia .............................................. 98
Pseudomonas caryophylli .............................................. 96 Pseudomonas mandelii .................................................. 98
Pseudomonas cattleyae ................................................. 96 Pseudomonas marginalis ............................................... 98
Pseudomonas cedrina.................................................... 96 Pseudomonas marina .................................................... 98
Pseudomonas cepacia ................................................... 96 Pseudomonas mediterranea ........................................... 98
Pseudomonas chloritidismutans ..................................... 96 Pseudomonas meliae..................................................... 98
Pseudomonas chlororaphis ............................................ 96 Pseudomonas mendocina .............................................. 98
Pseudomonas cichorii ................................................... 96 Pseudomonas mephitica ................................................ 98
Pseudomonas cissicola .................................................. 96 Pseudomonas mesophilica ............................................. 98
Pseudomonas citronellolis ............................................. 96 Pseudomonas migulae................................................... 98
Pseudomonas cocovenenans .......................................... 96 Pseudomonas mixta ...................................................... 98
Pseudomonas corrugata................................................. 96 Pseudomonas monteilii ................................................. 98
Pseudomonas costantinii ............................................... 96 Pseudomonas mosselii ................................................. 98
Pseudomonas cremoricolorata ....................................... 96 Pseudomonas mucidolens .............................................. 98
Pseudomonas dela? eldii ................................................ 96 Pseudomonas multiresinivorans ..................................... 98
Pseudomonas diminuta ................................................. 96 Pseudomonas nautica .................................................... 98
Pseudomonas doudorof?i .............................................. 97 Pseudomonas nitroreducens ........................................... 99
Pseudomonas echinoides ............................................... 97 Pseudomonas oleovorans .............................................. 99
Pseudomonas elongata .................................................. 97 Pseudomonas orientalis ................................................. 99
Pseudomonas extremorientalis ....................................... 97 Pseudomonas oryzihabitans ........................................... 99
Pseudomonas facilis ..................................................... 97 Pseudomonas palleroniana ............................................ 99
Pseudomonas ? cuserectae ............................................. 97 Pseudomonas palleronii ................................................ 99
376
Pseudomonas parafulva ................................................ 99 Pseudonocardia autotrophica .........................................2 46

Pseudomonas paucimobilis ............................................ 99 Pseudonocardia azurea ..................................................2 46
Pseudomonas perfectomarina......................................... 99 Pseudonocardia chloroethenivorans ................................2 46
Pseudomonas pertucinogena .......................................... 99 Pseudonocardia compacta .............................................2 46
Pseudomonas phenazinium ............................................ 99 Pseudonocardia halophobica ..........................................2 46
Pseudomonas pickettii .................................................. 99 Pseudonocardia hydrocarbonoxydans .............................2 46
Pseudomonas pictorum ................................................. 99 Pseudonocardia kongjuensis ..........................................2 46
Pseudomonas plantarii .................................................. 99 Pseudonocardia nitri?cans .............................................2 46
Pseudomonas plecoglossicida ........................................ 99 Pseudonocardia petroleophila ........................................2 47
Pseudomonas pseudoalcaligenes subsp. citrulli................ 99 Pseudonocardia saturnea ...............................................2 47
Pseudomonas pseudoalcaligenes subsp. konjaci ............... 99 Pseudonocardia spinosa ................................................2 47
Pseudomonas pseudoalcaligenes subsp. pseudoalcali- Pseudonocardia spinosispora .........................................2 47
genes ........................................................................ 99 Pseudonocardia sul? doxydans .......................................2 47
Pseudomonas pseudo?ava ............................................. 99 Pseudonocardia thermophila ..........................................2 46
Pseudomonas pseudomallei ........................................... 99 Pseudonocardia xinjiangensis .......................................2 47
Pseudomonas psychrophila ........................................... 99 Pseudonocardia yunnanensis .........................................2 47
Pseudomonas putida .....................................................100 Pseudonocardia zijingensis ...........................................2 47
Pseudomonas pyrrocinia ...............................................100 Pseudonocardiaceae................................................2 46
Pseudomonas radiora ....................................................100 Pseudonocardineae .................................................2 46
Pseudomonas resinovorans ............................................100 Pseudoramibacter .........................................................1 55
Pseudomonas rhizosphaerae ..........................................100 Pseudoramibacter alactolyticus ......................................1 55
Pseudomonas rhodesiae ................................................100 Pseudorhodobacter ....................................................... 45
Pseudomonas rhodos ....................................................100 Pseudorhodobacter ferrugineus ...................................... 45
Pseudomonas rubrilineans .............................................100 Pseudospirillum .......................................................... 92
Pseudomonas rubrisubalbicans .......................................100 Pseudospirillum japonicum ........................................... 92
Pseudomonas saccharophila...........................................100 Pseudoxanthomonas ..................................................... 85
Pseudomonas salomonii ................................................100 Pseudoxanthomonas broegbernensis ............................... 85
Pseudomonas savastanoi ...............................................100 Pseudoxanthomonas taiwanensis .................................... 85
Pseudomonas solanacearum ...........................................100 Psychrobacter ..............................................................1 03
Pseudomonas spinosa ...................................................100 Psychrobacter faecalis ...................................................1 03
Pseudomonas stanieri....................................................100 Psychrobacter fozii .......................................................1 03
Pseudomonas straminea ................................................100 Psychrobacter frigidicola ...............................................1 03
Pseudomonas stutzeri....................................................100 Psychrobacter glacincola ...............................................1 03
Pseudomonas synxantha ................................................100 Psychrobacter immobilis ...............................................1 03
Pseudomonas syringae subsp. savastanoi ........................100 Psychrobacter jeotgali ...................................................1 03
Pseudomonas syringae subsp. syringae ...........................100 Psychrobacter luti.........................................................1 03
Pseudomonas syzygii ....................................................100 Psychrobacter marincola ..............................................1 03
Pseudomonas taeniospiralis ...........................................100 Psychrobacter okhotskensi ............................................1 03
Pseudomonas taetrolens ................................................100 Psychrobacter paci?censis .............................................1 03
Pseudomonas testosteroni..............................................100 Psychrobacter phenylpyruvicus ......................................1 04
Pseudomonas thermotolerans .........................................100 Psychrobacter proteolyticus ...........................................1 04
Pseudomonas thivervalensis ..........................................100 Psychrobacter pulmonis ................................................1 04
Pseudomonas tolaasii ....................................................101 Psychrobacter submarinus ............................................1 04
Pseudomonas tremae ....................................................101 Psychrobacter urativorans .............................................1 04
Pseudomonas umsongensis ............................................101 Psychro?exus ...............................................................3 15
Pseudomonas vancouverensis ........................................101 Psychro?exus gondwanensis ..........................................3 15
Pseudomonas veronii ....................................................101 Psychro?exus torquis ....................................................3 15
Pseudomonas vesicularis ...............................................101 Psychromonas ..............................................................1 07
Pseudomonas viridi? ava ...............................................101 Psychromonas antarctica ...............................................1 08
Pseudomonas woodsii ...................................................101 Psychromonas arctica ...................................................1 08
Pseudonocardia ............................................................246 Psychromonas kaikoae ..................................................1 08
Pseudonocardia alaniniphila .........................................246 Psychromonas marina ...................................................1 08
Pseudonocardia alni......................................................246 Psychromonas profunda ................................................1 08
Pseudonocardia asaccharolytica .....................................246 Psychroserpens ............................................................3 15
Pseudonocardia aurantiaca ............................................246 Psychroserpens burtonensis ...........................................3 15
377
Pyrobaculum ................................................................ 11 Rarobacteraceae......................................................2 12

Pyrobaculum aerophilum .............................................. 11 Rathayibacter ...............................................................2 22
Pyrobaculum arsenaticum ............................................. 11 Rathayibacter caricis.....................................................2 22
Pyrobaculum islandicum ............................................... 11 Rathayibacter festucae ..................................................2 22
Pyrobaculum oguniense ................................................ 11 Rathayibacter iranicus ...................................................2 22
Pyrobaculum organotrophum ......................................... 11 Rathayibacter rathayi ....................................................2 22
Pyrococcus .................................................................. 23 Rathayibacter toxicus....................................................2 23
Pyrococcus furiosus ...................................................... 24 Rathayibacter tritici ......................................................2 23
Pyrococcus glycovorans ................................................ 24 Reichenbachia ..............................................................3 19
Pyrococcus horikoshii ................................................... 24 Reichenbachia agariperforans ........................................3 19
Pyrococcus woesei ....................................................... 24 Renibacterium ..............................................................2 12
Pyrodictiaceae ......................................................... 12 Renibacterium salmoninarum ........................................2 12
Pyrodictium ................................................................. 12 Rhabdochlamydia.........................................................3 02
Pyrodictium abyssi ....................................................... 12 Rhabdochlamydia porcellionis .......................................3 02
Pyrodictium brockii ...................................................... 12 Rhabdochromatium ...................................................... 80
Pyrodictium occultum ................................................... 12 Rhabdochromatium marinum......................................... 80
Pyrolobus .................................................................... 12 Rheinheimera............................................................... 80
Pyrolobus fumarii......................................................... 12 Rheinheimera baltica .................................................... 80
Pyxicoccus .................................................................135 Rheinheimera paci? ca................................................... 80
Pyxicoccus fallax .........................................................135 Rhizobacter .................................................................1 02
Rhizobacter dauci.........................................................1 02
Q Rhizobiaceae............................................................ 51
Quadricoccus .............................................................. 78 Rhizobiales............................................................... 51
Quadricoccus australiensis ............................................ 78 Rhizobium ................................................................... 51
Quinella ......................................................................159 Rhizobium ciceri .......................................................... 51
Quinella ovalis .............................................................159 Rhizobium etli ............................................................. 51
Rhizobium fredii .......................................................... 52
Rhizobium galegae ....................................................... 52
R
Rhizobium gallicum ..................................................... 52
Rahnella ......................................................................121
Rhizobium giardinii ...................................................... 52
Rahnella aquatilis .........................................................121
Rhizobium hainanense .................................................. 52
Ralstonia ..................................................................... 65
Rhizobium huakuii ....................................................... 52
Ralstonia basilensis ...................................................... 65
Rhizobium huautlense................................................... 52
Ralstonia campinensis ................................................... 65
Rhizobium indigoferae .................................................. 52
Ralstonia eutropha ........................................................ 65
Rhizobium japonicum ................................................... 52
Ralstonia gilardii .......................................................... 65
Rhizobium larrymoorei ................................................. 52
Ralstonia insidiosa........................................................ 65
Rhizobium leguminosarum ............................................ 51
Ralstonia mannitolilytica ............................................... 65
Rhizobium loti ............................................................. 52
Ralstonia metallidurans ................................................. 66
Rhizobium lupini.......................................................... 52
Ralstonia oxalatica ....................................................... 66
Rhizobium mediterraneum ............................................ 52
Ralstonia paucula ......................................................... 66
Rhizobium meliloti ....................................................... 52
Ralstonia pickettii......................................................... 65
Rhizobium mongolense................................................. 52
Ralstonia respiraculi ..................................................... 66
Rhizobium phaseoli ...................................................... 52
Ralstonia solanacearum ................................................. 66
Rhizobium radiobacter .................................................. 52
Ralstonia syzygii .......................................................... 66
Rhizobium rhizogenes .................................................. 52
Ralstonia taiwanensis .................................................... 66
Rhizobium rubi ............................................................ 52
Ramlibacter ................................................................. 71
Rhizobium sullae ......................................................... 52
Ramlibacter henchirensis .............................................. 71
Rhizobium tianshanense................................................ 52
Ramlibacter tataouinensis .............................................. 71
Rhizobium trifolii......................................................... 52
Raoultella ....................................................................121
Rhizobium tropici......................................................... 52
Raoultella ornithinolytica ..............................................121
Rhizobium undicola ...................................................... 52
Raoultella planticola .....................................................121
Rhizobium vitis ............................................................ 52
Raoultella terrigena ......................................................121
Rhizobium yanglingense ............................................... 52
Rarobacter ...................................................................212
Rhizomonas ................................................................. 49
Rarobacter faecitabidus .................................................212
Rhizomonas suberifaciens ............................................. 49
Rarobacter incanus .......................................................212
378
Rhodanobacter ............................................................. 85 Rhodococcus zop? i ......................................................2 39

Rhodanobacter lindaniclasticus ...................................... 85 Rhodocyclaceae ....................................................... 77
Rhodobaca................................................................... 45 Rhodocyclales .......................................................... 77
Rhodobaca bogoriensis ................................................. 45 Rhodocyclus ................................................................ 77
Rhodobacter ................................................................ 42 Rhodocyclus gelatinosus ............................................... 77
Rhodobacter adriaticus.................................................. 42 Rhodocyclus purpureus ................................................. 77
Rhodobacter azotoformans ............................................ 42 Rhodocyclus tenuis ....................................................... 77
Rhodobacter blasticus ................................................... 42 Rhodoferax .................................................................. 71
Rhodobacter capsulatus ................................................. 42 Rhodoferax antarcticus ................................................. 71
Rhodobacter euryhalinus ............................................... 42 Rhodoferax fermentans ................................................. 71
Rhodobacter sphaeroides ............................................... 42 Rhodoferax ferrireducens .............................................. 71
Rhodobacter sul?dophilus ............................................. 42 Rhodoglobus................................................................2 23
Rhodobacter veldkampii ............................................... 43 Rhodoglobus vestalii ....................................................2 23
Rhodobacteraceae ................................................... 42 Rhodomicrobium ......................................................... 61
Rhodobacterales...................................................... 42 Rhodomicrobium vannielii ............................................ 61
Rhodobiaceae........................................................... 63 Rhodopila .................................................................... 39
Rhodobium .................................................................. 63 Rhodopila globiformis .................................................. 39
Rhodobium marinum .................................................... 63 Rhodoplanes ................................................................ 61
Rhodobium orientis ...................................................... 63 Rhodoplanes elegans .................................................... 61
Rhodoblastus ............................................................... 59 Rhodoplanes roseus ...................................................... 61
Rhodoblastus acidophilus .............................................. 59 Rhodopseudomonas ...................................................... 59
Rhodocista................................................................... 35 Rhodopseudomonas acidophila ...................................... 59
Rhodocista centenaria ................................................... 35 Rhodopseudomonas adriatica......................................... 59
Rhodocista pekingensis ................................................. 35 Rhodopseudomonas blastica .......................................... 59
Rhodococcus ...............................................................237 Rhodopseudomonas capsulata........................................ 59
Rhodococcus aichiensis ................................................237 Rhodopseudomonas faecalis .......................................... 59
Rhodococcus aurantiacus ..............................................237 Rhodopseudomonas gelatinosa ...................................... 59
Rhodococcus bronchialis ...............................................237 Rhodopseudomonas globiformis .................................... 59
Rhodococcus chlorophenolicus ......................................237 Rhodopseudomonas julia .............................................. 59
Rhodococcus chubuensis ...............................................237 Rhodopseudomonas marina ........................................... 59
Rhodococcus coprophilus ..............................................237 Rhodopseudomonas palustris ......................................... 59
Rhodococcus corallinus ................................................237 Rhodopseudomonas rhenobacensis................................. 59
Rhodococcus equi ........................................................237 Rhodopseudomonas rosea ............................................. 59
Rhodococcus erythropolis .............................................237 Rhodopseudomonas rutila ............................................. 60
Rhodococcus fascians ...................................................238 Rhodopseudomonas sphaeroides .................................... 60
Rhodococcus globerulus ...............................................238 Rhodopseudomonas sul?dophila .................................... 60
Rhodococcus gordoniae ................................................238 Rhodopseudomonas sulfoviridis..................................... 60
Rhodococcus jostii ......................................................238 Rhodopseudomonas viridis ............................................ 60
Rhodococcus koreensis .................................................238 Rhodospira .................................................................. 35
Rhodococcus luteus ......................................................238 Rhodospira trueperi ...................................................... 35
Rhodococcus maanshanensis .........................................238 Rhodospirillaceae.................................................... 34
Rhodococcus marinonascens .........................................238 Rhodospirillales....................................................... 34
Rhodococcus maris .......................................................238 Rhodospirillum ............................................................ 34
Rhodococcus obuensis ..................................................238 Rhodospirillum centenum ............................................. 34
Rhodococcus opacus.....................................................238 Rhodospirillum fulvum ................................................. 34
Rhodococcus percolatus ................................................238 Rhodospirillum molischianum ....................................... 34
Rhodococcus pyridinivorans ..........................................238 Rhodospirillum photometricum ...................................... 35
Rhodococcus rhodnii ....................................................238 Rhodospirillum rubrum ................................................. 34
Rhodococcus rhodochrous .............................................237 Rhodospirillum salexigens ............................................ 35
Rhodococcus roseus .....................................................238 Rhodospirillum salinarum ............................................. 35
Rhodococcus ruber .......................................................238 Rhodospirillum sodomense ........................................... 35
Rhodococcus rubropertinctus .........................................238 Rhodospirillum tenue.................................................... 35
Rhodococcus sputi........................................................238 Rhodothalassium .......................................................... 45
Rhodococcus terrae ......................................................238 Rhodothalassium salexigens .......................................... 45
Rhodococcus wratislaviensis ........................................239 Rhodothermus ..............................................................3 20
379
Rhodothermus marinus .................................................320 Roseburia intestinalis ....................................................1 49

Rhodothermus obamensis..............................................320 Roseibium ................................................................... 45
Rhodovibrio ................................................................. 35 Roseibium denhamense................................................. 45
Rhodovibrio salinarum.................................................. 36 Roseibium hamelinense ................................................ 45
Rhodovibrio sodomensis ............................................... 36 Rosei? exus ................................................................. 28
Rhodovulum ................................................................ 45 Rosei? exus castenholzii ............................................... 28
Rhodovulum adriaticum ................................................ 45 Roseinatronobacter ....................................................... 45
Rhodovulum euryhalinum ............................................. 45 Roseinatronobacter thiooxidans ..................................... 45
Rhodovulum iodosum ................................................... 45 Roseivivax ................................................................... 45
Rhodovulum robiginosum ............................................. 45 Roseivivax halodurans .................................................. 45
Rhodovulum strictum ................................................... 45 Roseivivax halotolerans ................................................ 45
Rhodovulum sul?dophilum ........................................... 45 Roseobacter ................................................................. 45
Rickettsia .................................................................... 39 Roseobacter algicola ..................................................... 46
Rickettsia aeschlimannii................................................ 39 Roseobacter denitri?cans .............................................. 46
Rickettsia africae.......................................................... 39 Roseobacter gallaeciensis .............................................. 46
Rickettsia akari ............................................................ 40 Roseobacter litoralis ..................................................... 45
Rickettsia australis ........................................................ 40 Roseococcus ................................................................ 39
Rickettsia bellii ............................................................ 40 Roseococcus thiosulfatophilus ....................................... 39
Rickettsia canadensis .................................................... 40 Roseomonas ................................................................ 63
Rickettsia conorii ......................................................... 40 Roseomonas cervicalis .................................................. 63
Rickettsia felis ............................................................. 40 Roseomonas fauriae ...................................................... 63
Rickettsia helvetica ....................................................... 40 Roseomonas gilardii subsp. gilardii ................................ 63
Rickettsia honei ........................................................... 40 Roseomonas gilardii subsp. rosea................................... 63
Rickettsia japonica ....................................................... 40 Roseomonas mucosa..................................................... 63
Rickettsia massiliae ...................................................... 40 Roseospira ................................................................... 36
Rickettsia montanensis.................................................. 40 Roseospira marina ........................................................ 36
Rickettsia parkeri ......................................................... 40 Roseospira mediosalina................................................. 36
Rickettsia peacockii...................................................... 40 Roseospira navarrensis .................................................. 36
Rickettsia prowazekii.................................................... 39 Roseospirillum ............................................................. 63
Rickettsia rhipicephali .................................................. 40 Roseospirillum parvum ................................................. 63
Rickettsia rickettsii ....................................................... 40 Roseovarius ................................................................. 46
Rickettsia sennetsu ....................................................... 40 Roseovarius tolerans ..................................................... 46
Rickettsia sibirica ......................................................... 40 Rothia .........................................................................2 12
Rickettsia slovaca ......................................................... 40 Rothia amarae ..............................................................2 12
Rickettsia tsutsugamushi ............................................... 40 Rothia dentocariosa ......................................................2 12
Rickettsia typhi ............................................................ 40 Rothia mucilaginosa .....................................................2 12
Rickettsiaceae.......................................................... 39 Rothia nasimurium .......................................................2 12
Rickettsiales............................................................. 39 Rubrimonas ................................................................. 46
Rickettsiella ................................................................. 89 Rubrimonas cliftonensis ................................................ 46
Rickettsiella chironomi ................................................. 89 Rubritepida .................................................................. 39
Rickettsiella grylli ........................................................ 89 Rubritepida ? occulans .................................................. 39
Rickettsiella popilliae ................................................... 89 Rubrivivax ................................................................... 71
Rickettsiella stethorae ................................................... 89 Rubrivivax gelatinosus .................................................. 71
Riemerella ...................................................................315 Rubrobacter .................................................................2 05
Riemerella anatipestifer ................................................315 Rubrobacter radiotolerans .............................................2 05
Riemerella columbina ...................................................315 Rubrobacter xylanophilus ..............................................2 05
Rikenella .....................................................................309 Rubrobacteraceae ...................................................2 05
Rikenella microfusus ....................................................309 Rubrobacterales ......................................................2 05
Rikenellaceae ...........................................................309 Rubrobacteridae .....................................................2 05
Rivularia ..................................................................... 33 Rubrobacterineae....................................................2 05
Rivularia sp ................................................................. 33 Ruegeria ...................................................................... 46
Roseateles ................................................................... 71 Ruegeria algicola.......................................................... 46
Roseateles depolymerans .............................................. 71 Ruegeria atlantica......................................................... 46
Roseburia ....................................................................149 Ruegeria gelatinovorans ................................................ 46
Roseburia cecicola........................................................149 Rugamonas ..................................................................1 02
380
Rugamonas rubra .........................................................102 Saccharothrix albidocapillata .........................................2 51

Ruminobacter ..............................................................113 Saccharothrix australiensis ............................................2 51
Ruminobacter amylophilus ............................................113 Saccharothrix coeruleofusca ..........................................2 52
Ruminococcus .............................................................149 Saccharothrix coeruleoviolacea ......................................2 52
Ruminococcus albus .....................................................150 Saccharothrix cryophilis ................................................2 52
Ruminococcus bromii ...................................................150 Saccharothrix espanaensis .............................................2 52
Ruminococcus callidus .................................................150 Saccharothrix ? ava .......................................................2 52
Ruminococcus ? avefaciens ...........................................150 Saccharothrix longispora ...............................................2 52
Ruminococcus gnavus ..................................................150 Saccharothrix mutabilis subsp. capreolus ........................2 52
Ruminococcus hansenii.................................................150 Saccharothrix mutabilis subsp. mutabilis ........................2 52
Ruminococcus hydrogenotrophicus ................................150 Saccharothrix syringae ..................................................2 52
Ruminococcus lactaris ..................................................150 Saccharothrix tangerinus ...............................................2 52
Ruminococcus luti ........................................................150 Saccharothrix texasensis ...............................................2 52
Ruminococcus obeum ...................................................150 Saccharothrix violacea ..................................................2 52
Ruminococcus palustris ................................................150 Saccharothrix waywayandensis ......................................2 52
Ruminococcus pasteurii ................................................150 Sagittula ...................................................................... 46
Ruminococcus productus ..............................................150 Sagittula stellata ........................................................... 46
Ruminococcus schinkii .................................................150 Salana .........................................................................2 23
Ruminococcus torques ..................................................150 Salana multivorans .......................................................2 23
Runella .......................................................................319 Salegentibacter salegens ................................................3 15
Runella slithyformis .....................................................319 Salibacillus ..................................................................1 80
Runella zeae ................................................................319 Salibacillus marismortui................................................1 80
Salibacillus salexigens ..................................................1 80
S Saligentibacter .............................................................3 15
Saccharobacter .............................................................121 Salinibacter ..................................................................3 20
Saccharobacter fermentatus ...........................................121 Salinibacter ruber ........................................................3 20
Saccharococcus ............................................................180 Salinibacterium ............................................................2 23
Saccharococcus caldoxylosilyticus .................................180 Salinibacterium amurskyense.........................................2 23
Saccharococcus thermophilus ........................................180 Salinicoccus.................................................................1 89
Saccharomonospora......................................................249 Salinicoccus alkaliphilus ..............................................1 89
Saccharomonospora azurea............................................249 Salinicoccus hispanicus.................................................1 89
Saccharomonospora cyanea ...........................................249 Salinicoccus roseus .......................................................1 89
Saccharomonospora glauca ...........................................249 Salinivibrio ..................................................................1 12
Saccharomonospora halophila .......................................249 Salinivibrio costicola subsp. costicola ............................1 12
Saccharomonospora viridis ............................................249 Salinivibrio costicola subsp. vallismortis ........................1 12
Saccharomonospora xinjiangensis ..................................249 Salmonella...................................................................1 21
Saccharopolyspora .......................................................249 Salmonella arizonae ......................................................1 22
Saccharopolyspora erythraea .........................................249 Salmonella bongori.......................................................1 22
Saccharopolyspora ? ava ................................................250 Salmonella choleraesuis subsp. arizonae .........................1 22
Saccharopolyspora gregorii ...........................................250 Salmonella choleraesuis subsp. bongori ..........................1 22
Saccharopolyspora hirsuta subsp. hirsuta ........................249 Salmonella choleraesuis subsp. choleraesuis ...................1 22
Saccharopolyspora hirsuta subsp. kobensis .....................249 Salmonella choleraesuis subsp. diarizonae ......................1 22
Saccharopolyspora hirsuta subsp. taberi..........................249 Salmonella choleraesuis subsp. houtenae ........................1 22
Saccharopolyspora hordei .............................................250 Salmonella choleraesuis subsp. indica ............................1 22
Saccharopolyspora rectivirgula ......................................250 Salmonella choleraesuis subsp. salamae..........................1 22
Saccharopolyspora spinosa ............................................250 Salmonella enterica subsp. arizonae ...............................1 22
Saccharopolyspora spinosporotrichia ..............................250 Salmonella enterica subsp. bongori ................................1 22
Saccharopolyspora taberi ..............................................250 Salmonella enterica subsp. diarizonae ............................1 22
Saccharopolyspora thermophila .....................................250 Salmonella enterica subsp. enterica ................................1 21
Saccharospirillaceae ............................................... 94 Salmonella enterica subsp. houtenae ..............................1 22
Saccharospirillum ......................................................... 94 Salmonella enterica subsp. indica...................................1 22
Saccharospirillum impatiens .......................................... 94 Salmonella enterica subsp. salamae ................................1 22
Saccharothrix ...............................................................251 Salmonella enteritidis ...................................................1 22
Saccharothrix aerocolonigenes subsp. aerocolonigenes.....251 Salmonella paratyphi ....................................................1 22
Saccharothrix aerocolonigenes subsp. staurosporea..........251 Salmonella typhi ..........................................................1 22
381
Salmonella typhimurium ...............................................122 Serpulina pilosicoli .......................................................3 05

Samsonia .....................................................................122 Serpulinaceae...........................................................3 04
Samsonia erythrinae .....................................................122 Serratia .......................................................................1 22
Sandaracinobacter ........................................................ 49 Serratia entomophila .....................................................1 23
Sandaracinobacter sibiricus ........................................... 49 Serratia ?caria ..............................................................1 23
Sanguibacter ................................................................212 Serratia fonticola ..........................................................1 23
Sanguibacter inulinus ....................................................212 Serratia grimesii ...........................................................1 23
Sanguibacter keddieii....................................................212 Serratia liquefaciens .....................................................1 23
Sanguibacter suarezii ....................................................212 Serratia marcescens subsp. marcescens ...........................1 22
Sanguibacteraceae...................................................212 Serratia marcescens subsp. sakuensis .............................1 23
Saprospira ...................................................................317 Serratia marinorubra .....................................................1 23
Saprospira grandis ........................................................317 Serratia odorifera..........................................................1 23
Saprospiraceae ........................................................317 Serratia plymuthica.......................................................1 23
Sarcina ........................................................................148 Serratia proteamaculans subsp. proteamaculans ...............1 23
Sarcina maxima ...........................................................148 Serratia proteamaculans subsp. quinovora .......................1 23
Sarcina ventriculi .........................................................148 Serratia quinivorans ......................................................1 23
Scardovia ...................................................................300 Serratia rubidaea ..........................................................1 23
Scardovia inopinata .....................................................300 Shewanella ..................................................................1 08
Schineria ..................................................................... 85 Shewanella algae ..........................................................1 08
Schineria larvae ........................................................... 85 Shewanella amazonensis ...............................................1 08
Schlegelella ................................................................. 72 Shewanella baltica ........................................................1 08
Schlegelella thermodepolymerans .................................. 72 Shewanella benthica .....................................................1 08
Schwartzia ...................................................................159 Shewanella colwelliana .................................................1 08
Schwartzia succinivorans ..............................................159 Shewanella denitri? cans ................................................1 08
Scytonema ................................................................... 33 Shewanella ?delis.........................................................1 08
Scytonema hofmanni .................................................... 33 Shewanella frigidimarina ..............................................1 08
Sebaldella ....................................................................321 Shewanella gaetbuli ......................................................1 08
Sebaldella termitidis .....................................................321 Shewanella gelidimarina ...............................................1 08
Sedimentibacter ...........................................................152 Shewanella hanedai ......................................................1 08
Sedimentibacter hydroxybenzoicus ................................152 Shewanella japonica .....................................................1 08
Sedimentibacter saalensis .............................................152 Shewanella livingstonensis ...........................................1 08
Selenihalanaerobacter ...................................................165 Shewanella marinintestina .............................................1 08
Selenihalanaerobacter shriftii .........................................165 Shewanella olleyana .....................................................1 08
Selenomonas ................................................................159 Shewanella oneidensis ..................................................1 08
Selenomonas acidaminovorans ......................................159 Shewanella pealeana .....................................................1 08
Selenomonas artemidis .................................................159 Shewanella putrefaciens ................................................1 08
Selenomonas dianae .....................................................159 Shewanella sairae .........................................................1 08
Selenomonas ?ueggei ...................................................159 Shewanella schlegeliana................................................1 08
Selenomonas infelix .....................................................159 Shewanella violacea .....................................................1 08
Selenomonas lacticifex .................................................159 Shewanella woodyi.......................................................1 08
Selenomonas lipolytica .................................................159 Shigella .......................................................................1 23
Selenomonas noxia .......................................................159 Shigella boydii .............................................................1 23
Selenomonas ruminantium subsp. lactilytica ...................159 Shigella dysenteriae ......................................................1 23
Selenomonas ruminantium subsp. ruminantium ...............159 Shigella ?exneri ...........................................................1 23
Selenomonas sputigena .................................................159 Shigella sonnei.............................................................1 23
Seliberia ...................................................................... 61 Shuttleworthia ..............................................................1 50
Seliberia stellata ........................................................... 62 Shuttleworthia satelles ..................................................1 50
Serpens .......................................................................102 Silicibacter ................................................................. 46
Serpens ? exibilis ..........................................................102 Silicibacter lacuscaerulensis .......................................... 46
Serpulina .....................................................................304 Silicibacter pomeroyi .................................................... 46
Serpulina alvinipulli .....................................................305 Simkania .....................................................................3 02
Serpulina hyodysenteriae ..............................................304 Simkania negevensis.....................................................3 02
Serpulina innocens .......................................................305 Simkaniaceae...........................................................3 02
Serpulina intermedia .....................................................305 Simonsiella .................................................................. 76
Serpulina murdochii .....................................................305 Simonsiella crassa ........................................................ 76
382
Simonsiella muelleri ..................................................... 76 Sphingobacterium thalpophilum.....................................3 16

Simonsiella steedae ...................................................... 76 Sphingobium ............................................................... 49
Sinorhizobium ............................................................. 54 Sphingobium amiense ................................................... 50
Sinorhizobium adhaerens .............................................. 54 Sphingobium chlorophenolicum..................................... 49
Sinorhizobium arboris ................................................... 54 Sphingobium herbicidovorans........................................ 50
Sinorhizobium fredii ..................................................... 54 Sphingobium yanoikuyae .............................................. 49
Sinorhizobium kostiense ............................................... 54 Sphingomonadaceae ............................................... 46
Sinorhizobium kummerowiae ........................................ 54 Sphingomonadales .................................................. 46
Sinorhizobium medicae................................................. 54 Sphingomonas ............................................................. 46
Sinorhizobium meliloti ................................................. 54 Sphingomonas adhaesiva .............................................. 46
Sinorhizobium morelense .............................................. 54 Sphingomonas alaskensis .............................................. 46
Sinorhizobium saheli .................................................... 54 Sphingomonas aquatilis ................................................ 47
Sinorhizobium terangae ................................................ 54 Sphingomonas aromaticivorans ...................................... 47
Sinorhizobium xinjiangense........................................... 54 Sphingomonas asaccharolytica....................................... 47
Skermanella ................................................................. 36 Sphingomonas capsulata ............................................... 47
Skermanella parooensis ................................................. 36 Sphingomonas chlorophenolica ...................................... 47
Skermania ...................................................................229 Sphingomonas chungbukensis ....................................... 47
Skermania piniformis ....................................................230 Sphingomonas cloacae .................................................. 47
Slackia ........................................................................206 Sphingomonas echinoides ............................................. 47
Slackia exigua..............................................................206 Sphingomonas herbicidovorans ...................................... 47
Slackia heliotrinireducens .............................................206 Sphingomonas koreensis ............................................... 47
Smithella .....................................................................134 Sphingomonas macrogoltabidus ..................................... 47
Smithella propionica .....................................................134 Sphingomonas mali ...................................................... 47
Sneathia ......................................................................322 Sphingomonas melonis ................................................. 47
Sneathia sanguinegens .................................................322 Sphingomonas natatoria ................................................ 47
Sodalis ........................................................................123 Sphingomonas parapaucimobilis .................................... 47
Sodalis glossinidius ......................................................123 Sphingomonas paucimobilis .......................................... 46
Soehngenia ..................................................................148 Sphingomonas pituitosa ................................................ 47
Soehngenia saccharolytica .............................................148 Sphingomonas pruni ..................................................... 47
Solirubrobacter ............................................................205 Sphingomonas rosa....................................................... 47
Solirubrobacter pauli ....................................................205 Sphingomonas rosei? ava ............................................... 47
Solobacterium ..............................................................172 Sphingomonas sanguinis ............................................... 47
Solobacterium moorei ...................................................172 Sphingomonas stygia .................................................... 47
Sorangineae .............................................................135 Sphingomonas subarctica .............................................. 47
Sorangium ..................................................................136 Sphingomonas suberifaciens .......................................... 48
Sorangium cellulosum ..................................................136 Sphingomonas subterranea ............................................ 48
Sphaerobacter ..............................................................206 Sphingomonas taejonensis............................................. 48
Sphaerobacter thermophilus ...........................................206 Sphingomonas terrae .................................................... 48
Sphaerobacteraceae ................................................206 Sphingomonas trueperi ................................................. 48
Sphaerobacterales ...................................................206 Sphingomonas ursincola ............................................... 48
Sphaerobacteridae ..................................................206 Sphingomonas wittichii................................................. 48
Sphaerobacterineae.................................................206 Sphingomonas xenophaga ............................................. 48
Sphaerotilus ................................................................. 72 Sphingomonas yanoikuyae ............................................ 48
Sphaerotilus natans ....................................................... 72 Sphingopyxis ............................................................... 50
Sphingobacteria ......................................................316 Sphingopyxis alaskensis ................................................ 50
Sphingobacteriaceae ...............................................316 Sphingopyxis chilensis .................................................. 50
Sphingobacteriales ..................................................316 Sphingopyxis macrogoltabida ........................................ 50
Sphingobacterium ........................................................316 Sphingopyxis terrae ...................................................... 50
Sphingobacterium antarcticum .......................................316 Sphingopyxis wit?ariensis............................................. 50
Sphingobacterium faecium ............................................316 Spirillaceae............................................................... 77
Sphingobacterium heparinum ........................................316 Spirilliplanes................................................................2 43
Sphingobacterium mizutaii ............................................316 Spirilliplanes yamanashiensis ........................................2 43
Sphingobacterium multivorum .......................................316 Spirillospora ................................................................2 97
Sphingobacterium piscium ............................................316 Spirillospora albida.......................................................2 97
Sphingobacterium spiritivorum ......................................316 Spirillospora rubra ........................................................2 97
383
Spirillum ..................................................................... 77 Spiroplasma velocicrescens ...........................................1 71

Spirillum volutans ........................................................ 77 Spiroplasmataceae ..................................................1 70
Spirochaeta..................................................................302 Spirosoma ...................................................................3 19
Spirochaeta africana .....................................................303 Spirosoma linguale .......................................................3 19
Spirochaeta alkalica ......................................................303 Spirulina ..................................................................... 32
Spirochaeta americana ..................................................303 Spirulina major ............................................................ 32
Spirochaeta asiatica ......................................................303 Sporanaerobacter .........................................................1 52
Spirochaeta aurantia subsp. aurantia ...............................303 Sporanaerobacter acetigenes .........................................1 53
Spirochaeta aurantia subsp. stricta..................................303 Sporichthya .................................................................2 97
Spirochaeta caldaria......................................................303 Sporichthya brevicatena ................................................2 98
Spirochaeta halophila....................................................303 Sporichthya polymorpha ...............................................2 98
Spirochaeta isovalerica .................................................303 Sporichthyaceae ......................................................2 97
Spirochaeta litoralis ......................................................303 Sporobacter .................................................................1 48
Spirochaeta plicatilis.....................................................303 Sporobacter termitidis ...................................................1 48
Spirochaeta smaragdinae ...............................................303 Sporobacterium ............................................................1 50
Spirochaeta stenostrepta ................................................303 Sporobacterium olearium ..............................................1 50
Spirochaeta thermophila ................................................303 Sporocytophaga ...........................................................3 19
Spirochaeta zuelzerae ...................................................303 Sporocytophaga myxococcoides ....................................3 19
Spirochaetaceae.......................................................302 Sporohalobacter ...........................................................1 65
Spirochaetales..........................................................302 Sporohalobacter lortetii .................................................1 65
Spirochaetes.............................................................302 Sporohalobacter marismortui .........................................1 65
Spiroplasma .................................................................170 Sporolactobacillaceae .............................................1 86
Spiroplasma alleghenense .............................................170 Sporolactobacillus ........................................................1 86
Spiroplasma apis ..........................................................170 Sporolactobacillus inulinus ............................................1 86
Spiroplasma cantharicola ..............................................170 Sporolactobacillus kofuensis ..........................................1 86
Spiroplasma chinense ...................................................170 Sporolactobacillus lactosus ............................................1 86
Spiroplasma chrysopicola..............................................170 Sporolactobacillus nakayamae subsp. nakayamae ............1 86
Spiroplasma citri ..........................................................170 Sporolactobacillus nakayamae subsp. racemicus ..............1 86
Spiroplasma clarkii .......................................................171 Sporolactobacillus terrae ...............................................1 86
Spiroplasma corruscae ..................................................171 Sporomusa...................................................................1 59
Spiroplasma culicicola ..................................................171 Sporomusa acidovorans ................................................1 60
Spiroplasma diabroticae ................................................171 Sporomusa malonica.....................................................1 60
Spiroplasma diminutum ................................................171 Sporomusa ovata ..........................................................1 60
Spiroplasma ?oricola ....................................................171 Sporomusa paucivorans ................................................1 60
Spiroplasma gladiatoris .................................................171 Sporomusa silvacetica...................................................1 60
Spiroplasma helicoides .................................................171 Sporomusa sphaeroides .................................................1 60
Spiroplasma insolitum ..................................................171 Sporomusa termitida .....................................................1 60
Spiroplasma ixodetis.....................................................171 Sporosarcina ................................................................1 86
Spiroplasma kunkelii ....................................................171 Sporosarcina aquimarina ...............................................1 86
Spiroplasma lampyridicola ............................................171 Sporosarcina globispora ................................................1 86
Spiroplasma leptinotarsae..............................................171 Sporosarcina halophila ..................................................1 86
Spiroplasma lineolae.....................................................171 Sporosarcina pasteurii ...................................................1 86
Spiroplasma litorale ......................................................171 Sporosarcina psychrophila.............................................1 86
Spiroplasma melliferum ................................................171 Sporosarcina ureae .......................................................1 86
Spiroplasma mirum ......................................................171 Sporotomaculum ..........................................................1 63
Spiroplasma monobiae ..................................................171 Sporotomaculum hydroxybenzoicum ..............................1 63
Spiroplasma montanense ...............................................171 Sporotomaculum syntrophicum ......................................1 63
Spiroplasma phoeniceum ..............................................171 Staleya ........................................................................ 46
Spiroplasma platyhelix ..................................................171 Staleya guttiformis ....................................................... 46
Spiroplasma poulsonii ...................................................171 Stanieria ...................................................................... 31
Spiroplasma sabaudiense ...............................................171 Staphylococcaceae...................................................1 86
Spiroplasma syrphidicola ..............................................171 Staphylococcus ............................................................1 86
Spiroplasma tabanidicola ..............................................171 Staphylococcus arlettae .................................................1 87
Spiroplasma taiwanense ................................................171 Staphylococcus aureus subsp. anaerobius........................1 87
Spiroplasma turonicum .................................................171 Staphylococcus aureus subsp. aureus ..............................1 87
384
Staphylococcus auricularis ............................................187 Starkeya novella ........................................................... 62

Staphylococcus capitis subsp. capitis ..............................187 Starria ......................................................................... 32
Staphylococcus capitis subsp. urealyticus .......................187 Starria zimbabwensis .................................................. 32
Staphylococcus caprae ..................................................187 Stella .......................................................................... 39
Staphylococcus carnosus subsp. carnosus .......................187 Stella humosa .............................................................. 39
Staphylococcus carnosus subsp. utilis .............................187 Stella vacuolata ............................................................ 39
Staphylococcus caseolyticus ..........................................187 Stenotrophomonas ........................................................ 85
Staphylococcus chromogenes ........................................187 Stenotrophomonas acidaminiphila ................................. 85
Staphylococcus cohnii subsp. cohnii ..............................187 Stenotrophomonas africana ........................................... 85
Staphylococcus cohnii subsp. urealyticus ........................187 Stenotrophomonas maltophilia ....................................... 85
Staphylococcus condimenti ...........................................187 Stenotrophomonas nitritireducens .................................. 85
Staphylococcus delphini................................................187 Stenotrophomonas rhizophila......................................... 85
Staphylococcus epidermidis ...........................................187 Sterolibacterium ........................................................... 78
Staphylococcus equorum ...............................................187 Sterolibacterium denitri?cans ........................................ 78
Staphylococcus felis .....................................................187 Stetteria ....................................................................... 12
Staphylococcus ?eurettii ...............................................187 Stetteria hydrogenophila ............................................... 12
Staphylococcus gallinarum ............................................187 Stigmatella ..................................................................1 35
Staphylococcus haemolyticus ........................................187 Stigmatella aurantiaca ...................................................1 35
Staphylococcus hominis subsp. hominis .........................187 Stigmatella erecta .........................................................1 35
Staphylococcus hominis subsp. novobiosepticus..............187 Stigmatella hybrida.......................................................1 35
Staphylococcus hyicus subsp. chromogenes ....................188 Stigonema ................................................................... 33
Staphylococcus hyicus subsp. hyicus ..............................187 Stigonema minutum ...................................................... 33
Staphylococcus intermedius ...........................................188 Stomatococcus .............................................................2 12
Staphylococcus kloosii..................................................188 Stomatococcus mucilaginosus........................................2 12
Staphylococcus lentus ...................................................188 Streptoalloteichus .........................................................2 50
Staphylococcus lugdunensis ..........................................188 Streptoalloteichus hindustanus .......................................2 50
Staphylococcus lutrae ...................................................188 Streptobacillus .............................................................3 21
Staphylococcus muscae.................................................188 Streptobacillus moniliformis ..........................................3 22
Staphylococcus nepalensis ............................................188 Streptococcaceae .....................................................2 00
Staphylococcus pasteuri ................................................188 Streptococcus ...............................................................2 00
Staphylococcus piscifermentans .....................................188 Streptococcus acidominimus ..........................................2 00
Staphylococcus pulvereri ..............................................188 Streptococcus adjacens .................................................2 00
Staphylococcus saccharolyticus .....................................188 Streptococcus agalactiae ...............................................2 00
Staphylococcus saprophyticus subsp. bovis .....................188 Streptococcus alactolyticus ............................................2 00
Staphylococcus saprophyticus subsp. saprophyticus .........188 Streptococcus anginosus ...............................................2 00
Staphylococcus schleiferi subsp. coagulans .....................188 Streptococcus australis ..................................................2 00
Staphylococcus schleiferi subsp. schleiferi......................188 Streptococcus bovis ......................................................2 00
Staphylococcus sciuri subsp. carnaticus ..........................188 Streptococcus canis ......................................................2 00
Staphylococcus sciuri subsp. lentus ................................188 Streptococcus caprinus ..................................................2 00
Staphylococcus sciuri subsp. rodentium ..........................188 Streptococcus casseli?avus ............................................2 01
Staphylococcus sciuri subsp. sciuri ................................188 Streptococcus cecorum .................................................2 01
Staphylococcus simulans ...............................................188 Streptococcus constellatus subsp. constellatus .................2 01
Staphylococcus succinus ...............................................188 Streptococcus constellatus subsp. pharyngis ....................2 01
Staphylococcus succinus subsp. casei .............................188 Streptococcus cremoris .................................................2 01
Staphylococcus succinus subsp. succinus ........................188 Streptococcus criceti.....................................................2 01
Staphylococcus vitulinus ...............................................188 Streptococcus cristatus ..................................................2 01
Staphylococcus warneri ................................................189 Streptococcus defectivus ...............................................2 01
Staphylococcus xylosus ................................................189 Streptococcus didelphis.................................................2 01
Staphylothermus .......................................................... 12 Streptococcus dif?cilis ..................................................2 01
Staphylothermus hellenicus ........................................... 12 Streptococcus downei ...................................................2 01
Staphylothermus marinus .............................................. 12 Streptococcus durans ....................................................2 01
Stappia ........................................................................ 46 Streptococcus dysgalactiae subsp. dysgalactiae ...............2 01
Stappia aggregata ......................................................... 46 Streptococcus dysgalactiae subsp. equisimilis .................2 01
Stappia stellulata .......................................................... 46 Streptococcus entericus ................................................2 01
Starkeya ...................................................................... 62 Streptococcus equi subsp. equi ......................................2 01
385
Streptococcus equi subsp. zooepidemicus .......................201 Streptococcus sinensis ..................................................2 04

Streptococcus equinus ...................................................201 Streptococcus sobrinus ..................................................2 04
Streptococcus faecalis ...................................................201 Streptococcus suis ........................................................2 04
Streptococcus faecium ..................................................201 Streptococcus thermophilus ...........................................2 04
Streptococcus ferus .......................................................201 Streptococcus thoraltensis .............................................2 04
Streptococcus gallinaceus .............................................201 Streptococcus uberis .....................................................2 04
Streptococcus gallinarum ..............................................201 Streptococcus urinalis ...................................................2 04
Streptococcus gallolyticus .............................................201 Streptococcus vestibularis .............................................2 04
Streptococcus gallolyticus subsp. gallolyticus .................201 Streptococcus waius .....................................................2 04
Streptococcus gallolyticus subsp. macedonicus ...............202 Streptomonospora ........................................................2 93
Streptococcus gallolyticus subsp. pasteurianus ................202 Streptomonospora salina ...............................................2 93
Streptococcus garvieae..................................................202 Streptomyces ...............................................................2 52
Streptococcus gordonii..................................................202 Streptomyces abikoensis ...............................................2 52
Streptococcus hansenii ..................................................202 Streptomyces aburaviensis ............................................2 53
Streptococcus hyointestinalis .........................................202 Streptomyces achromogenes subsp. achromogenes ..........2 53
Streptococcus hyovaginalis ...........................................202 Streptomyces achromogenes subsp. rubradiris .................2 53
Streptococcus infantarius subsp. coli ...........................202 Streptomyces acidiscabies .............................................2 53
Streptococcus infantarius subsp. infantarius ....................202 Streptomyces acrimycini ...............................................2 53
Streptococcus infantis ...................................................202 Streptomyces aculeolatus ..............................................2 53
Streptococcus iniae .......................................................202 Streptomyces afghaniensis ............................................2 53
Streptococcus intermedius .............................................202 Streptomyces alanosinicus .............................................2 53
Streptococcus intestinalis ..............................................202 Streptomyces albaduncus ..............................................2 53
Streptococcus lactis subsp. cremoris ...............................202 Streptomyces albiaxialis ................................................2 53
Streptococcus lactis subsp. diacetilactis ..........................202 Streptomyces albidochromogenes ..................................2 53
Streptococcus lactis subsp. lactis ....................................202 Streptomyces albido? avus .............................................2 53
Streptococcus lutetiensis ..............................................202 Streptomyces albireticuli ...............................................2 53
Streptococcus macacae .................................................202 Streptomyces albofaciens ..............................................2 53
Streptococcus macedonicus ...........................................202 Streptomyces albo?avus ................................................2 53
Streptococcus minor .....................................................203 Streptomyces albogriseolus ...........................................2 53
Streptococcus mitis .......................................................203 Streptomyces albolongus ...............................................2 53
Streptococcus morbillorum ............................................203 Streptomyces alboniger .................................................2 53
Streptococcus mutans ...................................................203 Streptomyces albospinus ...............................................2 53
Streptococcus oligofermentans .......................................203 Streptomyces albosporeus subsp. albosporeus .................2 53
Streptococcus oralis ......................................................203 Streptomyces albosporeus subsp. labilomyceticus ............2 54
Streptococcus orisratti ...................................................203 Streptomyces alboverticillatus .......................................2 54
Streptococcus ovis ........................................................203 Streptomyces albovinaceus ............................................2 54
Streptococcus parasanguinis ..........................................203 Streptomyces alboviridis ...............................................2 54
Streptococcus parauberis ...............................................203 Streptomyces albulus ....................................................2 54
Streptococcus parvulus .................................................203 Streptomyces albus subsp. albus ....................................2 52
Streptococcus pasteurianus ...........................................203 Streptomyces albus subsp. pathocidicus ..........................2 52
Streptococcus peroris ....................................................203 Streptomyces almquistii ................................................2 54
Streptococcus phocae....................................................203 Streptomyces althioticus ...............................................2 54
Streptococcus plantarum ...............................................203 Streptomyces amakusaensis ...........................................2 54
Streptococcus pleomorphus ...........................................203 Streptomyces ambofaciens ............................................2 54
Streptococcus pluranimalium .........................................203 Streptomyces aminophilus.............................................2 54
Streptococcus pneumoniae ............................................203 Streptomyces anandii ....................................................2 54
Streptococcus porcinus .................................................203 Streptomyces anthocyanicus ..........................................2 54
Streptococcus pyogenes ................................................200 Streptomyces antibioticus ..............................................2 54
Streptococcus raf? nolactis .............................................203 Streptomyces antimycoticus ..........................................2 54
Streptococcus ratti ........................................................203 Streptomyces anulatus ..................................................2 54
Streptococcus saccharolyticus ........................................203 Streptomyces arabicus ..................................................2 54
Streptococcus salivarius subsp. salivarius .......................203 Streptomyces ardus .......................................................2 54
Streptococcus salivarius subsp. thermophilus ..................203 Streptomyces arenae .....................................................2 55
Streptococcus sanguinis ................................................203 Streptomyces argenteolus ..............................................2 55
Streptococcus shiloi......................................................204 Streptomyces armeniacus ..............................................2 55
386
Streptomyces asiaticus ..................................................255 Streptomyces cellulo?avus ............................................2 58

Streptomyces asterosporus ............................................255 Streptomyces cellulolyticus ...........................................2 58
Streptomyces atratus .....................................................255 Streptomyces cellulosae ................................................2 58
Streptomyces atroaurantiacus.........................................255 Streptomyces champavatii .............................................2 58
Streptomyces atroolivaceus ...........................................255 Streptomyces chartreusis ...............................................2 58
Streptomyces atrovirens ................................................255 Streptomyces chattanoogensis........................................2 58
Streptomyces aurantiacus ..............................................255 Streptomyces chibaensis ...............................................2 58
Streptomyces aurantiogriseus.........................................255 Streptomyces chrestomyceticus ......................................2 58
Streptomyces aureocirculatus.........................................255 Streptomyces chromofuscus ..........................................2 58
Streptomyces aureofaciens ............................................255 Streptomyces chryseus ..................................................2 58
Streptomyces aureorectus ..............................................255 Streptomyces chrysomallus subsp. chrysomallus .............2 58
Streptomyces aureoversilis ............................................255 Streptomyces chrysomallus subsp. fumigatus ..................2 58
Streptomyces aureoverticillatus......................................255 Streptomyces cinereorectus ...........................................2 58
Streptomyces avellaneus ...............................................255 Streptomyces cinereoruber subsp. cinereoruber ...............2 58
Streptomyces avermectinius ..........................................255 Streptomyces cinereoruber subsp. fructofermentans .........2 58
Streptomyces avermitilis ...............................................256 Streptomyces cinereospinus ...........................................2 58
Streptomyces avidinii ...................................................256 Streptomyces cinereus ..................................................2 59
Streptomyces azaticus ...................................................256 Streptomyces cinerochromogenes ..................................2 59
Streptomyces azureus ...................................................256 Streptomyces cinnabarinus ............................................2 59
Streptomyces baarnensis ...............................................256 Streptomyces cinnamonensis .........................................2 59
Streptomyces bacillaris .................................................256 Streptomyces cinnamoneus subsp. albosporus .................2 59
Streptomyces badius .....................................................256 Streptomyces cinnamoneus subsp. cinnamoneus ..............2 59
Streptomyces baldaccii .................................................256 Streptomyces cinnamoneus subsp. lanosus ......................2 59
Streptomyces bambergiensis ..........................................256 Streptomyces cinnamoneus subsp. sparsus ......................2 59
Streptomyces beijiangensis ............................................256 Streptomyces cirratus....................................................2 59
Streptomyces bellus ......................................................256 Streptomyces ciscaucasicus ...........................................2 59
Streptomyces bikiniensis ...............................................256 Streptomyces citreo? uorescens ......................................2 59
Streptomyces biverticillatus ...........................................256 Streptomyces clavifer ...................................................2 59
Streptomyces blastmyceticus .........................................256 Streptomyces clavuligerus .............................................2 59
Streptomyces bluensis ...................................................256 Streptomyces cochleatus ...............................................2 59
Streptomyces bobili ......................................................256 Streptomyces coelescens ...............................................2 59
Streptomyces bottropensis .............................................256 Streptomyces coelico? avus ...........................................2 59
Streptomyces brasiliensis ..............................................256 Streptomyces coelicolor ................................................2 59
Streptomyces bungoensis ..............................................257 Streptomyces coeruleo?avus ..........................................2 59
Streptomyces cacaoi subsp. asoensis ..............................257 Streptomyces coeruleofuscus .........................................2 60
Streptomyces cacaoi subsp. cacaoi .................................257 Streptomyces coeruleoprunus ........................................2 60
Streptomyces caelestis ..................................................257 Streptomyces coeruleorubidus .......................................2 60
Streptomyces caeruleus .................................................257 Streptomyces coerulescens ............................................2 60
Streptomyces californicus .............................................257 Streptomyces collinus ...................................................2 60
Streptomyces calvus .....................................................257 Streptomyces colombiensis ...........................................2 60
Streptomyces canarius ..................................................257 Streptomyces corchorusii ..............................................2 60
Streptomyces candidus..................................................257 Streptomyces costaricanus .............................................2 60
Streptomyces canescens ................................................257 Streptomyces cremeus ..................................................2 60
Streptomyces cangkringensis .........................................257 Streptomyces crystallinus ..............................................2 60
Streptomyces caniferus .................................................257 Streptomyces curacoi ....................................................2 60
Streptomyces canus ......................................................257 Streptomyces cuspidosporus ..........................................2 60
Streptomyces capillispiralis ...........................................257 Streptomyces cyaneofuscatus.........................................2 60
Streptomyces capoamus ................................................257 Streptomyces cyaneus ...................................................2 60
Streptomyces carpaticus ................................................257 Streptomyces cyanoalbus ..............................................2 60
Streptomyces carpinensis ..............................................257 Streptomyces cystargineus.............................................2 60
Streptomyces catenulae .................................................258 Streptomyces daghestanicus ..........................................2 60
Streptomyces caviscabies ..............................................258 Streptomyces diastaticus subsp. ardesiacus .....................2 61
Streptomyces cavourensis subsp. cavourensis..................258 Streptomyces diastaticus subsp. diastaticus .....................2 60
Streptomyces cavourensis subsp. washingtonensis ...........258 Streptomyces diastatochromogenes ................................2 61
Streptomyces cellostaticus .............................................258 Streptomyces distallicus ................................................2 61
387
Streptomyces djakartensis .............................................261 Streptomyces glaucus ...................................................2 64

Streptomyces durhamensis ............................................261 Streptomyces globisporus subsp. caucasicus ...................2 64
Streptomyces echinatus .................................................261 Streptomyces globisporus subsp. ? avofuscus ..................2 64
Streptomyces echinoruber .............................................261 Streptomyces globisporus subsp. globisporus ..................2 64
Streptomyces ederensis .................................................261 Streptomyces globosus ..................................................2 64
Streptomyces ehimensis ................................................261 Streptomyces glomeratus ..............................................2 64
Streptomyces endus ......................................................261 Streptomyces glomeroaurantiacus ..................................2 64
Streptomyces enissocaesilis ...........................................261 Streptomyces gobitricini ...............................................2 64
Streptomyces erumpens ................................................261 Streptomyces goshikiensis.............................................2 64
Streptomyces erythraeus ...............................................261 Streptomyces gougerotii................................................2 64
Streptomyces erythrogriseus ..........................................261 Streptomyces graminearus .............................................2 64
Streptomyces eurocidicus ..............................................261 Streptomyces graminofaciens ........................................2 64
Streptomyces europaeiscabiei ........................................261 Streptomyces griseinus .................................................2 64
Streptomyces eurythermus ............................................261 Streptomyces griseoaurantiacus .....................................2 64
Streptomyces exfoliatus ................................................261 Streptomyces griseobrunneus.........................................2 65
Streptomyces felleus .....................................................262 Streptomyces griseocarneus ...........................................2 65
Streptomyces fervens subsp. fervens ..............................262 Streptomyces griseochromogenes ...................................2 65
Streptomyces fervens subsp. melrosporus .......................262 Streptomyces griseo? avus .............................................2 65
Streptomyces ? lamentosus ............................................262 Streptomyces griseofuscus ............................................2 65
Streptomyces ? lipinensis ...............................................262 Streptomyces griseoincarnatus .......................................2 65
Streptomyces ? mbriatus ................................................262 Streptomyces griseoloalbus ...........................................2 65
Streptomyces ? micarius ................................................262 Streptomyces griseolosporeus ........................................2 65
Streptomyces ? nlayi .....................................................262 Streptomyces griseolus .................................................2 65
Streptomyces ? aveolus .................................................262 Streptomyces griseoluteus .............................................2 65
Streptomyces ? aveus ....................................................262 Streptomyces griseomycini............................................2 65
Streptomyces ? avidofuscus ...........................................262 Streptomyces griseoplanus ............................................2 65
Streptomyces ? avidovirens ............................................262 Streptomyces griseorubens ............................................2 65
Streptomyces ? aviscleroticus .........................................262 Streptomyces griseoruber ..............................................2 65
Streptomyces ? avofungini .............................................262 Streptomyces griseorubiginosus .....................................2 65
Streptomyces ? avofuscus ..............................................262 Streptomyces griseosporeus ...........................................2 66
Streptomyces ? avogriseus .............................................262 Streptomyces griseostramineus ......................................2 66
Streptomyces ? avopersicus ...........................................262 Streptomyces griseoverticillatus .....................................2 66
Streptomyces ? avotricini ...............................................263 Streptomyces griseoviridis ............................................2 66
Streptomyces ? avovariabilis ..........................................263 Streptomyces griseus subsp. alpha .................................2 66
Streptomyces ? avovirens ..............................................263 Streptomyces griseus subsp. cretosus .............................2 66
Streptomyces ? avoviridis ..............................................263 Streptomyces griseus subsp. griseus ...............................2 66
Streptomyces ? occulus .................................................263 Streptomyces griseus subsp. solvifaciens ........................2 66
Streptomyces ? oridae ...................................................263 Streptomyces hachijoensis .............................................2 66
Streptomyces ? uorescens ..............................................263 Streptomyces halstedii ..................................................2 66
Streptomyces fradiae ....................................................263 Streptomyces hawaiiensis ..............................................2 66
Streptomyces fragilis ....................................................263 Streptomyces heliomycini .............................................2 66
Streptomyces fulvissimus ..............................................263 Streptomyces helvaticus ................................................2 66
Streptomyces fulvorobeus .............................................263 Streptomyces herbaricolor .............................................2 66
Streptomyces fumanus ..................................................263 Streptomyces hiroshimensis...........................................2 66
Streptomyces fumigatiscleroticus ...................................263 Streptomyces hirsutus ...................................................2 66
Streptomyces galbus .....................................................263 Streptomyces humidus ..................................................2 66
Streptomyces galilaeus..................................................263 Streptomyces humiferus ................................................2 66
Streptomyces gancidicus ...............................................263 Streptomyces hydrogenans ............................................2 67
Streptomyces gardneri ..................................................263 Streptomyces hygroscopicus subsp. angustmyceticus .......2 67
Streptomyces gelaticus..................................................264 Streptomyces hygroscopicus subsp. decoyicus ................2 67
Streptomyces geysiriensis .............................................264 Streptomyces hygroscopicus subsp. glebosus ..................2 67
Streptomyces ghanaensis ...............................................264 Streptomyces hygroscopicus subsp. hygroscopicus ..........2 67
Streptomyces gibsonii ...................................................264 Streptomyces hygroscopicus subsp. ossamyceticus ..........2 67
Streptomyces glaucescens .............................................264 Streptomyces iakyrus ....................................................2 67
Streptomyces glaucosporus ...........................................264 Streptomyces indiaensis ................................................2 67
388
Streptomyces indigoferus ..............................................267 Streptomyces mauvecolor .............................................2 70

Streptomyces indonesiensis ...........................................267 Streptomyces mediocidicus ...........................................2 70
Streptomyces intermedius .............................................267 Streptomyces mediolani ................................................2 70
Streptomyces inusitatus .................................................267 Streptomyces megasporus .............................................2 70
Streptomyces ipomoeae ................................................267 Streptomyces melanogenes ............................................2 70
Streptomyces janthinus .................................................267 Streptomyces melanosporofaciens ..................................2 70
Streptomyces javensis ...................................................267 Streptomyces mexicanus ...............................................2 70
Streptomyces kanamyceticus .........................................267 Streptomyces michiganensis ..........................................2 70
Streptomyces kashimirensis ...........................................267 Streptomyces micro?avus .............................................2 70
Streptomyces kasugaensis .............................................267 Streptomyces minutiscleroticus ......................................2 71
Streptomyces katrae......................................................268 Streptomyces mirabilis ..................................................2 71
Streptomyces kentuckensis ............................................268 Streptomyces misakiensis ..............................................2 71
Streptomyces kifunensis ................................................268 Streptomyces misionensis .............................................2 71
Streptomyces kishiwadensis ..........................................268 Streptomyces mobaraensis ............................................2 71
Streptomyces kunmingensis ...........................................268 Streptomyces monomycini ............................................2 71
Streptomyces kurssanovii ..............................................268 Streptomyces morookaense ...........................................2 71
Streptomyces labedae ...................................................268 Streptomyces murinus ...................................................2 71
Streptomyces ladakanum ...............................................268 Streptomyces mutabilis .................................................2 71
Streptomyces lanatus ....................................................268 Streptomyces mutomycini .............................................2 71
Streptomyces lateritius ..................................................268 Streptomyces naganishii................................................2 71
Streptomyces laurentii ..................................................268 Streptomyces narbonensis .............................................2 71
Streptomyces lavendofoliae ...........................................268 Streptomyces nashvillensis ............................................2 71
Streptomyces lavendulae subsp. grasserius......................268 Streptomyces netropsis .................................................2 71
Streptomyces lavendulae subsp. lavendulae ....................268 Streptomyces neyagawaensis .........................................2 71
Streptomyces lavenduligriseus .......................................268 Streptomyces niger .......................................................2 71
Streptomyces lavendulocolor .........................................268 Streptomyces nigrescens ...............................................2 72
Streptomyces levis ........................................................268 Streptomyces nigrifaciens .............................................2 72
Streptomyces libani subsp. libani ...................................268 Streptomyces nitrosporeus .............................................2 72
Streptomyces libani subsp. rufus ....................................269 Streptomyces niveiciscabiei ...........................................2 72
Streptomyces lienomycini .............................................269 Streptomyces niveoruber ...............................................2 72
Streptomyces lilacinus ..................................................269 Streptomyces niveus .....................................................2 72
Streptomyces limosus ...................................................269 Streptomyces noboritoensis ...........................................2 72
Streptomyces lincolnensis .............................................269 Streptomyces nodosus ...................................................2 72
Streptomyces lipmanii ..................................................269 Streptomyces nogalater .................................................2 72
Streptomyces litmocidini ...............................................269 Streptomyces nojiriensis ...............................................2 72
Streptomyces lomondensis ............................................269 Streptomyces noursei ....................................................2 72
Streptomyces longisporo?avus .......................................269 Streptomyces novaecaesareae ........................................2 72
Streptomyces longispororuber ........................................269 Streptomyces ochraceiscleroticus ...................................2 72
Streptomyces longisporus..............................................269 Streptomyces odorifer ...................................................2 72
Streptomyces longwoodensis .........................................269 Streptomyces olivaceiscleroticus ....................................2 72
Streptomyces lucensis ...................................................269 Streptomyces olivaceoviridis .........................................2 72
Streptomyces luridiscabiei.............................................269 Streptomyces olivaceus .................................................2 72
Streptomyces luridus ....................................................269 Streptomyces olivochromogenes ....................................2 72
Streptomyces lusitanus..................................................269 Streptomyces olivomycini .............................................2 73
Streptomyces luteogriseus .............................................269 Streptomyces olivoreticuli subsp. cellulophilus ...............2 73
Streptomyces luteosporeus ............................................269 Streptomyces olivoreticuli subsp. olivoreticuli ................2 73
Streptomyces luteoverticillatus ......................................270 Streptomyces olivoverticillatus ......................................2 73
Streptomyces lydicus ....................................................270 Streptomyces olivoviridis ..............................................2 73
Streptomyces macrosporus ............................................270 Streptomyces omiyaensis ..............................................2 73
Streptomyces malachitofuscus .......................................270 Streptomyces orinoci ....................................................2 73
Streptomyces malachitospinus .......................................270 Streptomyces pactum ....................................................2 73
Streptomyces malaysiensis ............................................270 Streptomyces paracochleatus .........................................2 73
Streptomyces mashuensis ..............................................270 Streptomyces paradoxus ................................................2 73
Streptomyces massasporeus ...........................................270 Streptomyces parvisporogenes .......................................2 73
Streptomyces matensis ..................................................270 Streptomyces parvulus ..................................................2 73
389
Streptomyces parvus .....................................................273 Streptomyces rubiginosohelvolus ...................................2 77

Streptomyces peucetius .................................................273 Streptomyces rubiginosus ..............................................2 77
Streptomyces phaeochromogenes ...................................273 Streptomyces rubrogriseus ............................................2 77
Streptomyces phaeofaciens ............................................274 Streptomyces rutgersensis subsp. castelarensis ................2 77
Streptomyces phaeopurpureus ........................................274 Streptomyces rutgersensis subsp. rutgersensis .................2 77
Streptomyces phaeoviridis .............................................274 Streptomyces salmonis ..................................................2 77
Streptomyces phosalacineus ..........................................274 Streptomyces sampsonii ................................................2 77
Streptomyces pilosus ....................................................274 Streptomyces sannanensis .............................................2 77
Streptomyces platensis ..................................................274 Streptomyces sapporonensis ..........................................2 77
Streptomyces plicatus ...................................................274 Streptomyces scabiei ....................................................2 77
Streptomyces pluricolorescens .......................................274 Streptomyces scabrisporus ............................................2 77
Streptomyces polychromogenes .....................................274 Streptomyces sclerotialus ..............................................2 77
Streptomyces poonensis ................................................274 Streptomyces scopiformis .............................................2 77
Streptomyces praecox ...................................................274 Streptomyces seoulensis ................................................2 77
Streptomyces prasinopilosus ..........................................274 Streptomyces septatus ...................................................2 77
Streptomyces prasinosporus ...........................................274 Streptomyces setae .......................................................2 78
Streptomyces prasinus ..................................................274 Streptomyces setonii.....................................................2 78
Streptomyces prunicolor ...............................................274 Streptomyces showdoensis ............................................2 78
Streptomyces psammoticus ...........................................275 Streptomyces sindenensis ..............................................2 78
Streptomyces pseudoechinosporeus ................................275 Streptomyces sioyaensis ................................................2 78
Streptomyces pseudogriseolus .......................................275 Streptomyces somaliensis ..............................................2 78
Streptomyces pseudovenezuelae ....................................275 Streptomyces sparsogenes .............................................2 78
Streptomyces pulveraceus .............................................275 Streptomyces spectabilis ...............................................2 78
Streptomyces puniceus..................................................275 Streptomyces speibonae ................................................2 78
Streptomyces puniciscabiei ...........................................275 Streptomyces speleomycini ...........................................2 78
Streptomyces purpeofuscus ...........................................275 Streptomyces spheroides ...............................................2 78
Streptomyces purpurascens ...........................................275 Streptomyces spinoverrucosus .......................................2 78
Streptomyces purpureus ................................................275 Streptomyces spiralis ....................................................2 78
Streptomyces purpurogeneiscleroticus ............................275 Streptomyces spiroverticillatus ......................................2 78
Streptomyces racemochromogenes .................................275 Streptomyces spitsbergensis ..........................................2 78
Streptomyces rameus ....................................................275 Streptomyces sporocinereus...........................................2 78
Streptomyces ramulosus ................................................275 Streptomyces sporoclivatus ...........................................2 78
Streptomyces rangoonensis ...........................................275 Streptomyces spororaveus .............................................2 78
Streptomyces recifensis .................................................275 Streptomyces sporoverrucosus .......................................2 78
Streptomyces rectiverticillatus .......................................275 Streptomyces stelliscabiei .............................................2 79
Streptomyces rectiviolaceus ...........................................275 Streptomyces stramineus ...............................................2 79
Streptomyces regensis ...................................................275 Streptomyces subrutilus ................................................2 79
Streptomyces resistomyci?cus .......................................275 Streptomyces sulfonofaciens ..........................................2 79
Streptomyces reticuliscabiei ..........................................276 Streptomyces sulphureus ...............................................2 79
Streptomyces rhizosphaericus ........................................276 Streptomyces syringium ................................................2 79
Streptomyces rimosus subsp. paromomycinus .................276 Streptomyces tanashiensis .............................................2 79
Streptomyces rimosus subsp. rimosus .............................276 Streptomyces tauricus ...................................................2 79
Streptomyces rishiriensis ...............................................276 Streptomyces tendae .....................................................2 79
Streptomyces rochei .....................................................276 Streptomyces termitum .................................................2 79
Streptomyces roseiscleroticus ........................................276 Streptomyces thermoalcalitolerans .................................2 79
Streptomyces roseodiastaticus ........................................276 Streptomyces thermoautotrophicus .................................2 79
Streptomyces roseo? avus ..............................................276 Streptomyces thermocarboxydovorans ............................2 79
Streptomyces roseofulvus ..............................................276 Streptomyces thermocarboxydus ....................................2 79
Streptomyces roseolilacinus ...........................................276 Streptomyces thermocoprophilus ...................................2 79
Streptomyces roseolus ..................................................276 Streptomyces thermodiastaticus .....................................2 79
Streptomyces roseosporus .............................................276 Streptomyces thermogriseus ..........................................2 79
Streptomyces roseoverticillatus ......................................276 Streptomyces thermolineatus .........................................2 79
Streptomyces roseoviolaceus .........................................277 Streptomyces thermonitri?cans ......................................2 79
Streptomyces roseoviridis .............................................277 Streptomyces thermospinosisporus ................................2 79
Streptomyces ruber .......................................................277 Streptomyces thermoviolaceus subsp. apingens ...............2 79
390
Streptomyces thermoviolaceus subsp. thermoviolaceus ....279 Streptosporangium albidum ...........................................2 87

Streptomyces thermovulgaris .........................................279 Streptosporangium album ..............................................2 87
Streptomyces thioluteus ................................................280 Streptosporangium amethystogenes subsp.
Streptomyces torulosus .................................................280 amethystogenes ..........................................................2 87
Streptomyces toxytricini ...............................................280 Streptosporangium amethystogenes subsp. fukuiense .......2 87
Streptomyces tricolor ....................................................280 Streptosporangium carneum ..........................................2 87
Streptomyces tubercidicus .............................................280 Streptosporangium claviforme .......................................2 87
Streptomyces tuirus ......................................................280 Streptosporangium corrugatum ......................................2 87
Streptomyces turgidiscabies ...........................................280 Streptosporangium fragile .............................................2 87
Streptomyces umbrinus .................................................280 Streptosporangium indianense .......................................2 87
Streptomyces variabilis .................................................280 Streptosporangium longisporum.....................................2 87
Streptomyces variegatus ................................................280 Streptosporangium nondiastaticum .................................2 87
Streptomyces varsoviensis .............................................280 Streptosporangium pseudovulgare ..................................2 87
Streptomyces vastus .....................................................280 Streptosporangium roseum ............................................2 86
Streptomyces venezuelae ..............................................280 Streptosporangium subroseum ......................................2 87
Streptomyces vinaceus ..................................................280 Streptosporangium violaceochromogenes........................2 87
Streptomyces vinaceusdrappus .......................................280 Streptosporangium viridialbum ......................................2 87
Streptomyces violaceochromogenes ...............................280 Streptosporangium viridogriseum subsp. kofuense ...........2 87
Streptomyces violaceolatus ...........................................280 Streptosporangium viridogriseum subsp. viridogriseum ....2 87
Streptomyces violaceorectus ..........................................281 Streptosporangium vulgare ............................................2 87
Streptomyces violaceoruber ...........................................281 Streptoverticillium ........................................................2 83
Streptomyces violaceorubidus ........................................281 Streptoverticillium abikoense.........................................2 83
Streptomyces violaceus .................................................281 Streptoverticillium albireticuli .......................................2 83
Streptomyces violaceusniger..........................................281 Streptoverticillium alboverticillatum ..............................2 83
Streptomyces violarus ...................................................281 Streptoverticillium album ..............................................2 83
Streptomyces violascens ...............................................281 Streptoverticillium ardum ..............................................2 83
Streptomyces violatus ...................................................281 Streptoverticillium aureoversile .....................................2 83
Streptomyces violens ....................................................281 Streptoverticillium baldaccii ..........................................2 83
Streptomyces virens......................................................281 Streptoverticillium biverticillatum ..................................2 84
Streptomyces virginiae..................................................281 Streptoverticillium blastmyceticum ................................2 84
Streptomyces viridi? avus ..............................................281 Streptoverticillium cinnamoneum subsp. albosporum .......2 84
Streptomyces viridiviolaceus .........................................281 Streptoverticillium cinnamoneum subsp. cinnamoneum ...2 84
Streptomyces viridobrunneus .........................................281 Streptoverticillium cinnamoneum subsp. lanosum ...........2 84
Streptomyces viridochromogenes ...................................281 Streptoverticillium cinnamoneum subsp. sparsum ............2 84
Streptomyces viridodiastaticus .......................................281 Streptoverticillium distallicum .......................................2 84
Streptomyces viridosporus ............................................282 Streptoverticillium ehimense .........................................2 84
Streptomyces vitaminophilus .........................................282 Streptoverticillium eurocidicum .....................................2 84
Streptomyces wedmorensis ...........................................282 Streptoverticillium fervens subsp. fervens .......................2 84
Streptomyces werraensis ...............................................282 Streptoverticillium fervens subsp. melrosporus ................2 84
Streptomyces willmorei ................................................282 Streptoverticillium ?avopersicum ...................................2 84
Streptomyces xanthochromogenes..................................282 Streptoverticillium griseocarneum ..................................2 84
Streptomyces xanthocidicus ...........................................282 Streptoverticillium griseoverticillatum ............................2 84
Streptomyces xantholiticus ............................................282 Streptoverticillium hachijoense ......................................2 85
Streptomyces xanthophaeus ...........................................282 Streptoverticillium hiroshimense ....................................2 85
Streptomyces yeochonensis ...........................................282 Streptoverticillium kashmirense .....................................2 85
Streptomyces yerevanensis ............................................282 Streptoverticillium kentuckense .....................................2 85
Streptomyces yogyakartensis .........................................282 Streptoverticillium kishiwadense....................................2 85
Streptomyces yokosukanensis ........................................282 Streptoverticillium ladakanum .......................................2 85
Streptomyces yunnanensis .............................................282 Streptoverticillium lavenduligriseum ..............................2 85
Streptomyces zaomyceticus ...........................................282 Streptoverticillium lilacinum .........................................2 85
Streptomycetaceae ..................................................252 Streptoverticillium luteoverticillatum .............................2 85
Streptomycineae......................................................252 Streptoverticillium mashuense .......................................2 85
Streptosporangiaceae..............................................286 Streptoverticillium mobaraense ......................................2 85
Streptosporangineae ...............................................286 Streptoverticillium morookaense ....................................2 85
Streptosporangium .......................................................286 Streptoverticillium netropsis ..........................................2 85
391
Streptoverticillium olivomycini......................................285 Sulfolobus shibatae....................................................... 12

Streptoverticillium olivoreticuli subsp. cellulophilum .......285 Sulfolobus solfataricus .................................................. 12
Streptoverticillium olivoreticuli subsp. olivoreticuli .........285 Sulfolobus tokodaii....................................................... 12
Streptoverticillium olivoverticillatum .............................286 Sulfolobus yangmingensis ............................................. 12
Streptoverticillium orinoci.............................................286 Sulfophobococcus ........................................................ 12
Streptoverticillium parvisporogenes ...............................286 Sulfophobococcus zilligii .............................................. 12
Streptoverticillium rectiverticillatum ..............................286 Sulfurihydrogenibium ................................................... 25
Streptoverticillium reticulum subsp. protomycicum .........286 Sulfurihydrogenibium azorense ...................................... 25
Streptoverticillium roseoverticillatum .............................286 Sulfurihydrogenibium subterraneum ............................... 25
Streptoverticillium salmonis ..........................................286 Sulfurimonas ...............................................................1 40
Streptoverticillium sapporonense ...................................286 Sulfurimonas autotrophica.............................................1 40
Streptoverticillium septatum ..........................................286 Sulfurisphaera .............................................................. 13
Streptoverticillium syringium ........................................286 Sulfurisphaera ohwakuensis........................................... 13
Streptoverticillium thioluteum .......................................286 Sulfurococcus .............................................................. 13
Streptoverticillium verticillium subsp. quintum ...............286 Sulfurococcus mirabilis................................................. 13
Streptoverticillium verticillium subsp. tsukushiense .........286 Sulfurococcus yellowstonensis ....................................... 13
Streptoverticillium virido? avum ....................................286 Sulfurospirillum ...........................................................1 39
Stygiolobus.................................................................. 13 Sulfurospirillum arcachonense .......................................1 39
Stygiolobus azoricus ..................................................... 13 Sulfurospirillum arsenophilum .......................................1 39
Subsection 1 ............................................................. 30 Sulfurospirillum barnesii ...............................................1 39
Subsection 2 ............................................................. 31 Sulfurospirillum deleyianum ..........................................1 39
Subsection 3 ............................................................. 31 Sulfurospirillum halorespirans .......................................1 39
Subsection 4 ............................................................. 32 Sulfurospirillum multivorans .........................................1 39
Subsection 5 ............................................................. 33 Sutterella ..................................................................... 69
Subsection 5.1 .......................................................... 33 Sutterella wadsworthensis ............................................. 69
Subtercola ...................................................................223 Suttonella .................................................................... 85
Subtercola boreus .........................................................223 Suttonella indologenes .................................................. 85
Subtercola frigoramans .................................................223 Symbiotes ................................................................... 42
Subtercola pratensis ......................................................223 Symbiotes lectularius .................................................... 42
Succiniclasticum ..........................................................160 Symploca .................................................................... 32
Succiniclasticum ruminis ..............................................160 Synechococcus............................................................. 31
Succinimonas ...............................................................113 Synechococcus cedrorum .............................................. 31
Succinimonas amylolytica .............................................114 Synechococcus lividus .................................................. 31
Succinispira .................................................................160 Synechocystis .............................................................. 31
Succinispira mobilis .....................................................160 Synergistes .................................................................. 30
Succinivibrio ...............................................................113 Synergistes jonesii ........................................................ 30
Succinivibrio dextrinosolvens ........................................113 Syntrophaceae .........................................................1 33
Succinivibrionaceae ................................................113 Syntrophobacter ...........................................................1 33
Sul? tobacter ................................................................ 46 Syntrophobacter fumaroxidans .......................................1 33
Sul? tobacter brevis ....................................................... 46 Syntrophobacter pfennigii .............................................1 33
Sul? tobacter delicatus ................................................... 46 Syntrophobacter wolinii ................................................1 33
Sul? tobacter dubius ...................................................... 46 Syntrophobacteraceae ............................................1 33
Sul? tobacter mediterraneus ........................................... 46 Syntrophobacterales ...............................................1 33
Sul? tobacter pontiacus .................................................. 46 Syntrophobotulus .........................................................1 57
Sulfobacillus ................................................................181 Syntrophobotulus glycolicus ..........................................1 57
Sulfobacillus acidophilus ..............................................181 Syntrophococcus ..........................................................2 04
Sulfobacillus disul? dooxidans .......................................181 Syntrophococcus sucromutans .......................................2 04
Sulfobacillus thermosul?dooxidans ................................181 Syntrophomonadaceae ...........................................1 60
Sulfolobaceae ........................................................... 12 Syntrophomonas ..........................................................1 60
Sulfolobales.............................................................. 12 Syntrophomonas sapovorans ..........................................1 61
Sulfolobus ................................................................... 12 Syntrophomonas wolfei subsp. saponavida .....................1 60
Sulfolobus acidocaldarius .............................................. 12 Syntrophomonas wolfei subsp. wolfei ............................1 60
Sulfolobus brierleyi ...................................................... 12 Syntrophospora ............................................................1 61
Sulfolobus hakonensis .................................................. 12 Syntrophospora bryantii ................................................1 61
Sulfolobus metallicus .................................................... 12 Syntrophothermus ........................................................1 61
392
Syntrophothermus lipocalidus ........................................162 Thalassospira ............................................................... 36

Syntrophus ..................................................................133 Thalassospira lucentensis ............................................. 36
Syntrophus aciditrophicus .............................................133 Thauera ....................................................................... 78
Syntrophus buswellii ....................................................133 Thauera aminoaromatica ............................................... 78
Syntrophus gentianae ....................................................133 Thauera aromatica ........................................................ 78
Thauera chlorobenzoica ................................................ 78
T Thauera linaloolentis .................................................... 78
Tannerella ...................................................................310 Thauera mechernichensis .............................................. 78
Tannerella forsythensis .................................................310 Thauera phenylacetica .................................................. 78
Tatumella ....................................................................123 Thauera selenatis .......................................................... 78
Tatumella ptyseos .........................................................123 Thauera terpenica ......................................................... 78
Taylorella .................................................................... 69 Thermaceae ............................................................. 27
Taylorella asinigenitalis ................................................ 69 Thermacetogenium .......................................................1 63
Taylorella equigenitalis ................................................. 69 Thermacetogenium phaeum ...........................................1 63
Tectibacter ................................................................... 42 Thermaerobacter ..........................................................1 62
Tectibacter vulgaris ...................................................... 42 Thermaerobacter marianensis ........................................1 62
Teichococcus ............................................................... 39 Thermaerobacter nagasakiensis .....................................1 62
Teichococcus ludipueritiae ............................................ 39 Thermaerobacter subterraneus ......................................1 62
Telluria ....................................................................... 67 Thermales ................................................................ 27
Telluria chitinolytica ..................................................... 67 Thermanaeromonas ......................................................1 63
Telluria mixta............................................................... 67 Thermanaeromonas toyohensis ......................................1 63
Tenacibaculum .............................................................315 Thermanaerovibrio .......................................................1 62
Tenacibaculum amylolyticum ........................................315 Thermanaerovibrio acidaminovorans ..............................1 62
Tenacibaculum maritimum ............................................315 Thermanaerovibrio velox ..............................................1 62
Tenacibaculum mesophilum ..........................................316 Thermicanus ................................................................1 85
Tenacibaculum ovolyticum ............................................316 Thermicanus aegyptius .................................................1 85
Tenacibaculum skagerrakense ........................................316 Thermithiobacillaceae ............................................ 83
Tepidibacter .................................................................148 Thermithiobacillus ....................................................... 83
Tepidibacter formicigenes .............................................148 Thermithiobacillus tepidarius......................................... 83
Tepidibacter thalassicus ................................................148 Thermoactinomyces .....................................................1 89
Tepidimonas ................................................................ 72 Thermoactinomyces candidus ........................................1 89
Tepidimonas aquatica ................................................... 72 Thermoactinomyces dichotomicus .................................1 89
Tepidimonas ignava ...................................................... 72 Thermoactinomyces intermedius ....................................1 89
Terasakiella ................................................................. 57 Thermoactinomyces peptonophilus ................................1 89
Terasakiella pusilla ...................................................... 57 Thermoactinomyces putidus ..........................................1 89
Teredinibacter ..............................................................109 Thermoactinomyces sacchari .........................................1 89
Teredinibacter turnerae .................................................109 Thermoactinomyces thalpophilus ...................................1 89
Terrabacter ..................................................................216 Thermoactinomyces vulgaris .........................................1 89
Terrabacter tumescens ...................................................216 Thermoactinomycetaceae.......................................1 89
Terracoccus .................................................................216 Thermoanaerobacter .....................................................1 63
Terracoccus luteus ........................................................216 Thermoanaerobacter acetoethylicus ................................1 63
Tessaracoccus ..............................................................244 Thermoanaerobacter brockii subsp. brockii .....................1 63
Tessaracoccus bendigoensis ...........................................244 Thermoanaerobacter brockii subsp. ?nnii........................1 63
Tetragenococcus ...........................................................198 Thermoanaerobacter brockii subsp. lactiethylicus ............1 63
Tetragenococcus halophilus ...........................................198 Thermoanaerobacter ethanolicus ....................................1 63
Tetragenococcus muriaticus ...........................................198 Thermoanaerobacter ? nnii.............................................1 63
Tetrasphaera ................................................................216 Thermoanaerobacter italicus ..........................................1 63
Tetrasphaera australiensis ..............................................216 Thermoanaerobacter kivui .............................................1 63
Tetrasphaera elongata ...................................................217 Thermoanaerobacter mathranii.......................................1 64
Tetrasphaera japonica ...................................................216 Thermoanaerobacter siderophilus ...................................1 64
Thalassolituus .............................................................. 92 Thermoanaerobacter subterraneus ..................................1 64
Thalassolituus oleivorans .............................................. 92 Thermoanaerobacter sulfurophilus .................................1 64
Thalassomonas.............................................................108 Thermoanaerobacter tengcongensis ................................1 64
Thalassomonas ganghwensis .........................................109 Thermoanaerobacter thermocopriae................................1 64
Thalassomonas viridans ................................................108 Thermoanaerobacter thermohydrosulfuricus ....................1 64
393
Thermoanaerobacter wiegelii .........................................164 Thermocrinis albus ....................................................... 25

Thermoanaerobacter yonseiensis ....................................164 Thermocrinis ruber ....................................................... 25
Thermoanaerobacteriaceae....................................162 Thermocrispum ............................................................2 50
Thermoanaerobacteriales.......................................162 Thermocrispum agreste .................................................2 50
Thermoanaerobacterium ................................................162 Thermocrispum municipale ...........................................2 50
Thermoanaerobacterium aotearoense ..............................162 Thermodesulfatator ...................................................... 26
Thermoanaerobacterium polysaccharolyticum .................162 Thermodesulfatator indicus ........................................... 27
Thermoanaerobacterium saccharolyticum .......................162 Thermodesulfobacteria........................................... 26
Thermoanaerobacterium thermosaccharolyticum .............162 Thermodesulfobacteriaceae ................................... 26
Thermoanaerobacterium thermosulfurigenes ...................162 Thermodesulfobacteriales ...................................... 26
Thermoanaerobacterium xylanolyticum ..........................162 Thermodesulfobacterium ............................................... 26
Thermoanaerobacterium zeae ........................................162 Thermodesulfobacterium commune................................ 26
Thermoanaerobium ......................................................164 Thermodesulfobacterium hveragerdense ......................... 26
Thermoanaerobium acetigenum .....................................164 Thermodesulfobacterium hydrogeniphilum .................... 26
Thermoanaerobium brockii ...........................................164 Thermodesulfobacterium mobile .................................... 26
Thermobacillus ............................................................185 Thermodesulfobacterium thermophilum .......................... 26
Thermobacillus xylanilyticus .........................................185 Thermodesulfobiaceae............................................1 64
Thermobi? da ...............................................................293 Thermodesulfobium .....................................................1 64
Thermobi? da alba ........................................................293 Thermodesulfobium narugense ......................................1 64
Thermobi? da cellulolytica .............................................293 Thermodesulforhabdus ..................................................1 33
Thermobi? da fusca .......................................................293 Thermodesulforhabdus norvegica...................................1 33
Thermobispora .............................................................250 Thermodesulfovibrio .................................................... 29
Thermobispora bispora .................................................250 Thermodesulfovibrio islandicus ..................................... 29
Thermobrachium ..........................................................148 Thermodesulfovibrio yellowstonii .................................. 29
Thermobrachium celere ................................................148 Thermodiscus ............................................................. 12
Thermochromatium ...................................................... 80 Thermodiscus maritimus ............................................... 12
Thermochromatium tepidum.......................................... 80 Thermo?laceae ........................................................ 11
Thermocladium ............................................................ 11 Thermo?lum ................................................................ 11
Thermocladium modestius ............................................ 11 Thermo?lum pendens ................................................... 11
Thermococcaceae .................................................... 23 Thermohalobacter ........................................................1 48
Thermococcales ....................................................... 23 Thermohalobacter berrensis ...........................................1 48
Thermococci ............................................................ 23 Thermohydrogenium ....................................................1 62
Thermococcus.............................................................. 23 Thermohydrogenium kirishiense ....................................1 62
Thermococcus acidaminovorans .................................... 23 Thermoleophilum .........................................................2 05
Thermococcus aegaeus ................................................. 23 Thermoleophilum album ...............................................2 05
Thermococcus aggregans .............................................. 23 Thermoleophilum minutum ...........................................2 05
Thermococcus alcaliphilus ............................................ 23 Thermomicrobia ..................................................... 29
Thermococcus barophilus .............................................. 23 Thermomicrobiaceae .............................................. 29
Thermococcus celer ...................................................... 23 Thermomicrobiales................................................. 29
Thermococcus chitonophagus ........................................ 23 Thermomicrobium ........................................................ 29
Thermococcus fumicolans ............................................. 23 Thermomicrobium fosteri .............................................. 29
Thermococcus gammatolerans ....................................... 23 Thermomicrobium roseum ............................................ 29
Thermococcus gorgonarius ............................................ 23 Thermomonas .............................................................. 85
Thermococcus guaymasensis ......................................... 23 Thermomonas brevis .................................................... 85
Thermococcus hydrothermalis ....................................... 23 Thermomonas fusca ...................................................... 85
Thermococcus litoralis .................................................. 23 Thermomonas haemolytica ........................................... 85
Thermococcus paci?cus ................................................ 23 Thermomonas hydrothermalis........................................ 85
Thermococcus peptonophilus......................................... 23 Thermomonospora .......................................................2 93
Thermococcus profundus .............................................. 23 Thermomonospora alba.................................................2 93
Thermococcus sibiricus ................................................. 23 Thermomonospora chromogena .....................................2 94
Thermococcus siculi ..................................................... 23 Thermomonospora curvata ............................................2 93
Thermococcus stetteri ................................................... 23 Thermomonospora formosensis .....................................2 94
Thermococcus waiotapuensis......................................... 23 Thermomonospora fusca ...............................................2 94
Thermococcus zilligii ................................................... 23 Thermomonospora mesophila ........................................2 94
Thermocrinis ............................................................... 25 Thermomonospora mesouviformis .................................2 94
394
Thermomonosporaceae ..........................................293 Thermus igniterrae ....................................................... 27

Thermonema................................................................320 Thermus oshimai .......................................................... 27
Thermonema lapsum ....................................................320 Thermus ruber ............................................................. 27
Thermonema rossianum ................................................320 Thermus scotoductus .................................................... 27
Thermoplasma ............................................................. 22 Thermus silvanus ......................................................... 27
Thermoplasma acidophilum ........................................... 22 Thermus thermophilus .................................................. 27
Thermoplasma volcanium ............................................. 22 Thialkalivibrio ............................................................. 82
Thermoplasmata ..................................................... 22 Thialkalivibrio denitri?cans ........................................... 82
Thermoplasmataceae.............................................. 22 Thialkalivibrio jannaschii ............................................. 82
Thermoplasmatales................................................. 22 Thialkalivibrio nitratireducens ....................................... 82
Thermoproteaceae .................................................. 11 Thialkalivibrio nitratis .................................................. 82
Thermoproteales ..................................................... 11 Thialkalivibrio paradoxus ............................................. 82
Thermoprotei........................................................... 11 Thialkalivibrio thiocyanoxidans .................................... 82
Thermoproteus ............................................................. 11 Thialkalivibrio versutus ................................................ 82
Thermoproteus neutrophilus .......................................... 11 Thioalkalicoccus .......................................................... 80
Thermoproteus tenax .................................................... 11 Thioalkalicoccus limnaeus ............................................ 80
Thermoproteus uzoniensis ............................................. 11 Thioalkalimicrobium .................................................... 87
Thermosipho ................................................................ 26 Thioalkalimicrobium aerophilum ................................... 87
Thermosipho africanus.................................................. 26 Thioalkalimicrobium cyclicum ..................................... 87
Thermosipho geolei ...................................................... 26 Thioalkalimicrobium sibiricum ...................................... 87
Thermosipho japonicus ................................................. 26 Thioalkalispira ............................................................. 82
Thermosipho melanesiensis ........................................... 26 Thioalkalispira microaerophila....................................... 82
Thermosphaera ............................................................ 12 Thiobaca .................................................................... 80
Thermosphaera aggregans ............................................. 12 Thiobaca trueperi ........................................................ 80
Thermosyntropha .........................................................162 Thiobacillus ................................................................. 72
Thermosyntropha lipolytica ...........................................162 Thiobacillus acidophilus ............................................... 72
Thermoterrabacterium ...................................................157 Thiobacillus albertis ..................................................... 72
Thermoterrabacterium ferrireducens ...............................157 Thiobacillus aquaesulis ................................................. 72
Thermothrix ................................................................. 66 Thiobacillus caldus ....................................................... 72
Thermothrix azorensis .................................................. 66 Thiobacillus concretivorus ............................................ 72
Thermothrix thiopara .................................................... 66 Thiobacillus delicatus ................................................... 72
Thermotoga ................................................................. 25 Thiobacillus denitri?cans .............................................. 72
Thermotoga el?i ........................................................... 25 Thiobacillus ferrooxidans .............................................. 72
Thermotoga hypogea .................................................... 25 Thiobacillus halophilus ................................................. 72
Thermotoga lettingae ................................................... 25 Thiobacillus hydrothermalis .......................................... 72
Thermotoga maritima ................................................... 25 Thiobacillus intermedius ............................................... 73
Thermotoga naphthophila.............................................. 25 Thiobacillus neapolitanus .............................................. 73
Thermotoga neapolitana ................................................ 25 Thiobacillus novellus .................................................... 73
Thermotoga petrophila .................................................. 26 Thiobacillus perometabolis ............................................ 73
Thermotoga subterranea ................................................ 26 Thiobacillus rapidicrescens ........................................... 73
Thermotoga thermarum ................................................. 26 Thiobacillus tepidarius .................................................. 73
Thermotogaceae...................................................... 25 Thiobacillus thermosulfatus ........................................... 73
Thermotogae............................................................ 25 Thiobacillus thiooxidans ............................................... 73
Thermotogales......................................................... 25 Thiobacillus thioparus ................................................... 72
Thermovenabulum .......................................................164 Thiobacillus thyasiris .................................................... 73
Thermovenabulum ferriorganovorum .............................164 Thiobacillus versutus .................................................... 73
Thermovibrio ............................................................... 25 Thiobacterium .............................................................. 86
Thermovibrio ammoni?cans .......................................... 25 Thiobacterium bovistum ............................................... 86
Thermovibrio ruber ...................................................... 25 Thiocapsa .................................................................... 80
Thermus ...................................................................... 27 Thiocapsa halophila ...................................................... 80
Thermus antranikianii ................................................... 27 Thiocapsa litoralis ........................................................ 80
Thermus aquaticus ........................................................ 27 Thiocapsa pendens ....................................................... 80
Thermus brockianus ..................................................... 27 Thiocapsa pfennigii ...................................................... 81
Thermus chliarophilus .................................................. 27 Thiocapsa rosea ........................................................... 81
Thermus ? liformis ........................................................ 27 Thiocapsa roseopersicina .............................................. 80
395
Thiococcus .................................................................. 81 Thiothrix unzii ............................................................. 86

Thiococcus pfennigii .................................................... 81 Thiotrichaceae......................................................... 85
Thiocystis .................................................................... 81 Thiotrichales............................................................ 85
Thiocystis gelatinosa .................................................... 81 Thiovulum ...................................................................1 40
Thiocystis minor .......................................................... 81 Thiovulum majus .........................................................1 40
Thiocystis violacea ....................................................... 81 Tindallia ......................................................................1 48
Thiocystis violascens .................................................... 81 Tindallia californiensis ..................................................1 49
Thiodictyon ................................................................. 81 Tindallia magadiensis ...................................................1 48
Thiodictyon bacillosum ................................................. 81 Tissierella ....................................................................1 53
Thiodictyon elegans...................................................... 81 Tissierella creatinini .....................................................1 53
Thio?avicoccus ............................................................ 81 Tissierella creatinophila ................................................1 53
Thio?avicoccus mobilis ................................................ 81 Tissierella praeacuta .....................................................1 53
Thiohalocapsa .............................................................. 81 Tistrella ....................................................................... 36
Thiohalocapsa halophila ................................................ 81 Tistrella mobilis ........................................................... 36
Thiolamprovum ........................................................... 81 Tolumonas ...................................................................1 13
Thiolamprovum pedioforme .......................................... 81 Tolumonas auensis .......................................................1 13
Thiomargarita .............................................................. 86 Tolypothrix .................................................................. 33
Thiomargarita namibiensis ............................................ 86 Tolypothrix tenuis ........................................................ 33
Thiomicrospira............................................................. 87 Toxothrix.....................................................................3 20
Thiomicrospira chilensis ............................................... 87 Toxothrix trichogenes ...................................................3 20
Thiomicrospira crunogena ............................................. 87 Trabulsiella ..................................................................1 23
Thiomicrospira denitri?cans .......................................... 87 Trabulsiella guamensis ..................................................1 23
Thiomicrospira frisia .................................................... 87 Treponema ..................................................................3 04
Thiomicrospira kuenenii ............................................... 87 Treponema amylovorum ...............................................3 04
Thiomicrospira pelophila .............................................. 87 Treponema brennaborense .............................................3 04
Thiomicrospira thyasirae ............................................... 87 Treponema bryantii ......................................................3 04
Thiomonas ................................................................... 72 Treponema denticola.....................................................3 04
Thiomonas cuprina ....................................................... 72 Treponema hyodysenteriae ............................................3 04
Thiomonas intermedia .................................................. 72 Treponema innocens .....................................................3 04
Thiomonas perometabolis ............................................. 72 Treponema lecithinolyticum ..........................................3 04
Thiomonas thermosulfata .............................................. 72 Treponema maltophilum ...............................................3 04
Thiopedia .................................................................... 81 Treponema medium ......................................................3 04
Thiopedia rosea ............................................................ 81 Treponema minutum .....................................................3 04
Thioploca .................................................................... 86 Treponema pallidum .....................................................3 04
Thioploca araucae ........................................................ 86 Treponema paraluiscuniculi ...........................................3 04
Thioploca chileae ......................................................... 86 Treponema parvum .......................................................3 04
Thioploca ingrica ......................................................... 86 Treponema pectinovorum ..............................................3 04
Thioploca schmidlei ..................................................... 86 Treponema pertenue .....................................................3 04
Thiorhodococcus .......................................................... 81 Treponema saccharophilum ...........................................3 04
Thiorhodococcus minor ................................................ 81 Treponema socranskii subsp. buccale .............................3 04
Thiorhodospira............................................................. 83 Treponema socranskii subsp. paredis ..............................3 04
Thiorhodospira sibirica ................................................. 83 Treponema socranskii subsp. socranskii ..........................3 04
Thiorhodovibrio ........................................................... 81 Treponema succinifaciens .............................................3 04
Thiorhodovibrio winogradskyi ....................................... 81 Trichlorobacter.............................................................1 33
Thiospira ..................................................................... 86 Trichlorobacter thiogenes ..............................................1 33
Thiospira winogradskyi................................................. 86 Trichococcus ...............................................................1 97
Thiospirillum ............................................................... 81 Trichococcus ?occuliformis ...........................................1 97
Thiospirillum jenense ................................................... 81 Trichococcus palustris...................................................1 97
Thiothrix ..................................................................... 85 Trichococcus pasteurii ..................................................1 97
Thiothrix de?uvii ......................................................... 85 Trichodesmium ............................................................ 32
Thiothrix disciformis ................................................... 86 Tropheryma .................................................................2 15
Thiothrix eikelboomii ................................................... 86 Tropheryma whipplei....................................................2 15
Thiothrix ? exilis .......................................................... 86 Tsukamurella ...............................................................2 39
Thiothrix fructosivorans ................................................ 86 Tsukamurella inchonensis ..............................................2 39
Thiothrix nivea ............................................................ 85 Tsukamurella paurometabola .........................................2 39
396
Tsukamurella pulmonis .................................................239 Verrucomicrobiaceae ..............................................3 22

Tsukamurella spumae ...................................................239 Verrucomicrobiae....................................................3 22
Tsukamurella strandjordii .............................................239 Verrucomicrobiales.................................................3 22
Tsukamurella tyrosinosolvens ........................................239 Verrucomicrobium ........................................................3 22
Tsukamurella wratislaviensis .........................................239 Verrucomicrobium spinosum .........................................3 22
Tsukamurellaceae....................................................239 Verrucosispora .............................................................2 43
Turicella ......................................................................301 Verrucosispora gifhornensis ...........................................2 43
Turicella otitidis ...........................................................301 Vibrio .........................................................................1 09
Turicibacter ................................................................190 Vibrio aerogenes ..........................................................1 09
Turicibacter sanguinis ..................................................190 Vibrio aestuarianus .......................................................1 09
Turicibacteraceae ....................................................190 Vibrio agarivorans ........................................................1 09
Tychonema .................................................................. 32 Vibrio albensis .............................................................1 09
Tychonema sp .............................................................. 32 Vibrio alginolyticus ......................................................1 09
Vibrio anguillarum .......................................................1 09
U Vibrio brasiliensis.........................................................1 09
Unknown Af?liation ...............................................300 Vibrio calviensis ..........................................................1 09
Ureaplasma..................................................................169 Vibrio campbellii..........................................................1 09
Ureaplasma canigenitalium ...........................................169 Vibrio carchariae ..........................................................1 09
Ureaplasma cati ...........................................................170 Vibrio chagasii .............................................................1 09
Ureaplasma diversum ...................................................170 Vibrio cholerae ............................................................1 09
Ureaplasma felinum......................................................170 Vibrio cincinnatiensis ...................................................1 09
Ureaplasma gallorale ....................................................170 Vibrio coralliilyticus .....................................................1 09
Ureaplasma parvum .....................................................170 Vibrio costicola ............................................................1 09
Ureaplasma urealyticum ................................................169 Vibrio cyclitrophicus ....................................................1 09
Ureibacillus .................................................................180 Vibrio damselae ...........................................................1 09
Ureibacillus terrenus .....................................................180 Vibrio diabolicus ..........................................................1 09
Ureibacillus thermosphaericus .......................................180 Vibrio diazotrophicus....................................................1 09
Vibrio ? scheri ..............................................................1 09
Vibrio ? uvialis .............................................................1 09
V
Vibrio furnissii .............................................................1 09
Vagococcus..................................................................198
Vibrio gazogenes ..........................................................1 09
Vagococcus fessus ........................................................198
Vibrio halioticoli ..........................................................1 10
Vagococcus ?uvialis .....................................................198
Vibrio harveyi ..............................................................1 10
Vagococcus lutrae.........................................................198
Vibrio hispanicus ..........................................................1 10
Vagococcus salmoninarum ............................................199
Vibrio hollisae .............................................................1 10
Vampirovibrio ..............................................................134
Vibrio ichthyoenteri ......................................................1 10
Vampirovibrio chlorellavorus.........................................134
Vibrio iliopiscarius .......................................................1 10
Varibaculum ................................................................209
Vibrio kanaloae ............................................................1 10
Varibaculum cambriense ...............................................209
Vibrio lentus ................................................................1 10
Variovorax ................................................................... 71
Vibrio logei .................................................................1 10
Variovorax paradoxus ................................................... 71
Vibrio marinus .............................................................1 10
Veillonella ...................................................................160
Vibrio mediterranei.......................................................1 10
Veillonella alcalescens subsp. alcalescens .......................160
Vibrio metschnikovii ....................................................1 10
Veillonella alcalescens subsp. criceti ..............................160
Vibrio mimicus ............................................................1 10
Veillonella alcalescens subsp. dispar ..............................160
Vibrio mytili ................................................................1 10
Veillonella alcalescens subsp. ratti .................................160
Vibrio natriegens ..........................................................1 10
Veillonella atypica ........................................................160
Vibrio navarrensis ........................................................1 10
Veillonella caviae .........................................................160
Vibrio neptunius ...........................................................1 10
Veillonella criceti .........................................................160
Vibrio nereis ................................................................1 10
Veillonella dispar..........................................................160
Vibrio nigripulchritudo .................................................1 10
Veillonella parvula subsp. atypica ..................................160
Vibrio ordalii ...............................................................1 10
Veillonella parvula subsp. parvula ..................................160
Vibrio orientalis ...........................................................1 10
Veillonella parvula subsp. rodentium ..............................160
Vibrio parahaemolyticus ...............................................1 10
Veillonella ratti ............................................................160
Vibrio pectenicida ........................................................1 10
Veillonella rodentium ....................................................160
Vibrio pelagius .............................................................1 10
Verrucomicrobia .....................................................322
397
Vibrio penaeicida .........................................................110 Wautersia gilardii ........................................................ 66

Vibrio pomeroyi ...........................................................110 Wautersia metallidurans ............................................... 66
Vibrio proteolyticus ......................................................110 Wautersia oxalatica ...................................................... 66
Vibrio ruber .................................................................110 Wautersia paucula ........................................................ 66
Vibrio rumoiensis .........................................................110 Wautersia respiraculi .................................................... 66
Vibrio salmonicida .......................................................110 Wautersia taiwanensis ................................................... 66
Vibrio scophthalmi .......................................................110 Weeksella ....................................................................3 16
Vibrio shilonii ..............................................................111 Weeksella virosa ..........................................................3 16
Vibrio splendidus .........................................................111 Weeksella zoohelcum ...................................................3 16
Vibrio succinogenes......................................................111 Weissella .....................................................................1 99
Vibrio superstes............................................................111 Weissella cibaria ..........................................................2 00
Vibrio tapetis ...............................................................111 Weissella confusa .........................................................2 00
Vibrio tasmaniensis ......................................................111 Weissella halotolerans ...................................................2 00
Vibrio trachuri .............................................................111 Weissella hellenica .......................................................2 00
Vibrio tubiashii ............................................................111 Weissella kandleri ........................................................2 00
Vibrio viscosus ............................................................111 Weissella kimchii ........................................................2 00
Vibrio vulni? cus ...........................................................111 Weissella koreensis ......................................................2 00
Vibrio wodanis .............................................................111 Weissella minor ............................................................2 00
Vibrio xuii ...................................................................111 Weissella paramesenteroides ..........................................2 00
Vibrionaceae ............................................................109 Weissella soli ..............................................................2 00
Vibrionales ...............................................................109 Weissella thailandensis ..................................................2 00
Victivallaceae ...........................................................322 Weissella viridescens ....................................................2 00
Victivallis ....................................................................322 Wigglesworthia ............................................................1 23
Victivallis vadensis .......................................................322 Wigglesworthia glossinidia............................................1 23
Virgibacillus ................................................................180 Williamsia ...................................................................2 39
Virgibacillus carmonensis..............................................180 Williamsia maris ..........................................................2 39
Virgibacillus marismortui ..............................................180 Williamsia muralis .......................................................2 39
Virgibacillus necropolis.................................................180 Williamsiaceae.........................................................2 39
Virgibacillus pantothenticus ...........................................180 Wolbachia ................................................................... 41
Virgibacillus picturae ....................................................180 Wolbachia melophagi ................................................... 41
Virgibacillus proomii ....................................................180 Wolbachia persica ........................................................ 41
Virgibacillus salexigens.................................................180 Wolbachia pipientis ...................................................... 41
Virgisporangium ..........................................................243 Wolinella .....................................................................1 40
Virgisporangium aurantiacum ........................................243 Wolinella curva ............................................................1 40
Virgisporangium ochraceum ..........................................243 Wolinella recta .............................................................1 40
Vitreoscilla .................................................................. 76 Wolinella succinogenes .................................................1 40
Vitreoscilla beggiatoides ............................................... 76
Vitreoscilla ? liformis .................................................... 76 X
Vitreoscilla stercoraria .................................................. 76 Xanthobacter ............................................................... 62
Vogesella ..................................................................... 76 Xanthobacter agilis ....................................................... 62
Vogesella indigofera ..................................................... 76 Xanthobacter aminoxidans ............................................ 62
Vulcanisaeta ................................................................ 11 Xanthobacter autotrophicus ........................................... 62
Vulcanisaeta distributa ................................................. 11 Xanthobacter ?avus ...................................................... 62
Vulcanisaeta souniana .................................................. 11 Xanthobacter tagetidis .................................................. 62
Vulcanithermus ............................................................ 28 Xanthobacter viscosus .................................................. 62
Vulcanithermus mediatlanticus ...................................... 28 Xanthomonadaceae................................................. 83
Xanthomonadales.................................................... 83
W Xanthomonas ............................................................... 83
Waddlia .......................................................................302 Xanthomonas albilineans .............................................. 83
Waddlia chondrophila ...................................................302 Xanthomonas ampelina ................................................. 83
Waddliaceae.............................................................302 Xanthomonas arboricola ............................................... 83
Wautersia .................................................................... 66 Xanthomonas axonopodis ............................................. 83
Wautersia basilensis ..................................................... 66 Xanthomonas bromi ..................................................... 83
Wautersia campinensis .................................................. 66 Xanthomonas campestris ............................................... 83
Wautersia eutropha ...................................................... 66 Xanthomonas cassavae ................................................. 83
398
Xanthomonas citri ........................................................ 83 Xylophilus ................................................................... 72

Xanthomonas codiaei.................................................... 84 Xylophilus ampelinus ................................................... 72
Xanthomonas cucurbitae ............................................... 84
Xanthomonas cynarae ................................................... 84 Y
Xanthomonas fragariae ................................................. 84 Yania ..........................................................................2 12
Xanthomonas hortorum ................................................. 84 Yania halotolerans ........................................................2 12
Xanthomonas hyacinthi................................................. 84 Yersinia .......................................................................1 24
Xanthomonas maltophilia.............................................. 84 Yersinia aldovae ...........................................................1 24
Xanthomonas melonis ................................................... 84 Yersinia bercovieri........................................................1 24
Xanthomonas oryzae .................................................... 84 Yersinia enterocolitica subsp. enterocolitica ....................1 24
Xanthomonas phaseoli .................................................. 84 Yersinia enterocolitica subsp. palearctica ........................1 24
Xanthomonas pisi......................................................... 84 Yersinia frederiksenii ....................................................1 24
Xanthomonas populi ..................................................... 84 Yersinia intermedia .......................................................1 24
Xanthomonas sacchari .................................................. 84 Yersinia kristensenii......................................................1 24
Xanthomonas theicola ................................................... 84 Yersinia mollaretii ........................................................1 24
Xanthomonas translucens .............................................. 84 Yersinia pestis ..............................................................1 24
Xanthomonas vasicola .................................................. 84 Yersinia philomiragia ....................................................1 24
Xanthomonas vesicatoria .............................................. 84 Yersinia pseudotuberculosis subsp. pestis .......................1 24
Xenococcus ................................................................. 31 Yersinia pseudotuberculosis subsp. pseudotuberculosis ....1 24
Xenococcus schousboei ................................................ 31 Yersinia rohdei .............................................................1 24
Xenohaliotis ................................................................ 41 Yersinia ruckeri ............................................................1 24
Xenohaliotis californiensis ............................................ 41 Yokenella ....................................................................1 24
Xenophilus .................................................................. 71 Yokenella regensburgei .................................................1 24
Xenophilus azovorans ................................................... 71
Xenorhabdus ................................................................123
Z
Xenorhabdus beddingii .................................................124
Zavarzinia ................................................................... 39
Xenorhabdus bovienii ...................................................124
Zavarzinia compransoris ............................................... 39
Xenorhabdus japonica ...................................................124
Zobellia .......................................................................3 16
Xenorhabdus luminescens .............................................124
Zobellia galactanivorans ...............................................3 16
Xenorhabdus nematophila subsp. beddingii.....................123
Zobellia uliginosa.........................................................3 16
Xenorhabdus nematophila subsp. bovienii ......................123
Zoogloea ..................................................................... 78
Xenorhabdus nematophila subsp. nematophila ................123
Zoogloea ramigera........................................................ 78
Xenorhabdus nematophila subsp. poinarii .......................124
Zoogloea resiniphila ..................................................... 78
Xenorhabdus poinarii....................................................124
Zooshikella .................................................................. 92
Xiphinematobacter .......................................................322
Zooshikella ganghwensis .............................................. 92
Xiphinematobacter americanii .......................................322
Zymobacter ................................................................. 94
Xiphinematobacter brevicollii ........................................322
Zymobacter palmae ...................................................... 94
Xiphinematobacter revesi ..............................................322
Zymomonas ................................................................. 50
Xiphinematobacteriaceae .......................................322
Zymomonas mobilis subsp. mobilis ............................... 50
Xylanibacterium ...........................................................223
Zymomonas mobilis subsp. pomaceae ............................ 50
Xylanibacterium ulmi ...................................................224
Zymophilus .................................................................1 60
Xylanimonas ................................................................224
Zymophilus paucivorans ...............................................1 60
Xylanimonas cellulosilytica ...........................................224
Zymophilus raf? nosivorans ...........................................1 60
Xylella ........................................................................ 85
Xylella fastidiosa.......................................................... 85
399

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DOI:10.

TAXONOMIC OUTLINE OF THE PROKARYOTES

2004 Bergeys Manual Trust

All rights reserved. This work may not be transferred or copied in

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Springer New York Berlin Heidelberg

2004 Bergeys Manual Trust

Ran k Taxon Phylum Class

Class Anaerolineae Chloro?exi

Ord er Anaerolinaeles Chloro?exi Anaerolineae

Family Anaerolinaeceea Chloro?exi Anaerolineae

Hydrogenimonaceae Proteobacteria Epsilonproteobacteria

Thermodesulfobiaceae Firmicutes Clostridia

Gen us Aeriscardovia Actinobacteria Actinobacteria

Aestuariibacter Proteobacteria Gamm aproteobacteria

Alistipes Bacteroidetes Bacteroidetes

Anaerolinea Chloro?exi Anaerolineae

Anaerotruncus Firmicutes Clostridia

Aquicella Proteobacteria Gamm aproteobacteria

Arsenicicoccus Actinobacteria Actinobacteria

Balnearium Aqui?cae Aqui?cae

Belliella Bacteroidetes Sphingobacteria

Bryantella Firmicutes Clostridia

Caldanaerobacter Firmicutes Clostridia

Caldilinea Chloro?exi Anaerolineae

Caldithrix D eferribacteres Deferribacteres

Desulfatibacillum Proteobacteria Deltaproteobacteria

Fulvimarina Proteobacteria Alphaproteobacteria

Gillisia Bacteroidetes Flavobacteria

Hespellia Firmicutes Clostridia

Hongiella Bacteroidetes Sphingobacteria

Hydrogenimonas Proteobacteria Epsilonproteobacteria

Hylemonella Proteobacteria Betaproteobacteria

Kerstersia Proteobacteria Betaproteobacteria

Mesonia Bacteroidetes Flavobacteria

Methanomethylovorans Euryarchaeota Methanomicrobia

Nitratireductor Proteobacteria Alphaproteobacteria

Oceanicaulis Proteobacteria Alphaproteobacteria

Oceanisphaera Proteobacteria Gamm aproteobacteria

Ottowia Proteobacteria Betaproteobacteria

Parasporobacterium Firmicutes Clostridia

Phytoplasma Firmicutes Mollicutes

Propionicimonas Actinobacteria Actinobacteria

Rhabdochlamydia Chlamydiae Chlam ydiae

Salinibacterium Actinobacteria Actinobacteria

Ran k Taxon Phylum Class

Silicibacter Proteobacteria Alphaproteobacteria

Soehngenia Firmicutes Clostridia

Sulfurimonas Proteobacteria Epsilonproteobacteria

Thalassolituus Proteobacteria Gamm aproteobacteria

Thermodesulfatator Therm odesulfobacteria Thermodesulfobacteria

Thermodesulfobium Firmicutes Clostridia

Wautersia Proteobacteria Betaproteobacteria

Xylanibacterium Actinobacteria Actinobacteria

Yania Actinobacteria Actinobacteria

Species Achromobacter denitri?cans Proteobacteria Betaproteobacteria