Detection and Enumeration of Bacteria in Swabs and Other Environmental Samples PDF
Detection and Enumeration of Bacteria in Swabs and Other Environmental Samples PDF
Detection and Enumeration of Bacteria in Swabs and Other Environmental Samples PDF
Microbiology Services
Food Water and Environmental
Microbiology
Standard Method
FNES4 [E1]
Detection and enumeration of bacteria in swabs and other environmental samples
Issued by
PHE Microbiology Services
Food, Water & Environmental Microbiology
Methods Working Group
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Detection and enumeration of bacteria in swabs and other environmental samples
Contents
About Public Health England 2
Contents 3
Status of Microbiology Services Food, Water and Environmental Microbiology Methods 4
Amendment history 5
Introduction 6
Scope 6
Background 6
1.0 Principle 7
2.0 Definitions 8
3.0 Safety considerations 8
3.1General safety considerations 8
3.2Specific safety considerations 8
3.3Laboratory containment 8
4.0 Equipment 9
5.0 Media,reagents and issue of sampling equipment 9
5.1Commercially prepared dacron swabs with neutralising buffer 9
5.2Commercially prepared sponge swabs with neutralising buffer 9
5.3Commercially prepared viscose tipped swabs with Amies charcoal medium 10
5.4Sampling bags for collection of other environmental samples 10
5.5Media and Reagents 10
6.0 Sample processing 11
6.1Sample preparation and dilutions 11
6.2Inoculation and incubation 13
7.0 Quality control 14
8.0 Calculation of results 14
9.0 Reporting of results 15
9.1Enumeration 15
9.2Detection 16
10.0 Reference facilities and referral of cultures 16
11.0 Acknowledgements and contacts 16
References 18
Appendix 1: Swabbing for pathogens and indicator organisms using dacron tipped swabs.
19
Appendix 2: Sponge swabs instructions for use 20
Appendix 3: Detection and enumeration of bacteria in swabs and other environmental
samples 21
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Detection and enumeration of bacteria in swabs and other environmental samples
Whereas every care has been taken in the preparation of this publication, Public
Health England (PHE) cannot be responsible for the accuracy of any statement or
representation made or the consequences arising from the use of or alteration to
any information contained in it. These procedures are intended solely as a general
resource for practising professionals in the field, operating in the UK, and specialist
advice should be obtained where necessary. If you make any changes to this
publication, it must be made clear where changes have been made to the original
document. PHE should at all times be acknowledged.
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Detection and enumeration of bacteria in swabs and other environmental samples
Amendment history
The amendment history is shown below. On issue of revised or new documents each controlled document
should be updated by the copyholder in the laboratory.
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Detection and enumeration of bacteria in swabs and other environmental samples
Introduction
Scope
This method is applicable to the procedures used for examination of environmental samples
including swabs from carcasses in meat processing plants, swabs of food preparation
surfaces and other environmental samples such as cloths collected from the food
manufacturing environment and bottle rinses.
This support method must be used in conjunction with accredited methods for the detection
of bacteria in foods and includes the use of three different types of swab.
Background
The significance of food contact surfaces in food safety is highlighted in the Food Safety
Act 19901 which states under section 29 (c) that authorised officers can take a sample
from any food source, or a sample of any contact material, which is found by him on or in
any such premises. This implies that environmental samples are to be considered as part
of legislation. EU Legislation also states that Sampling of the production and processing
environment can be a useful tool to identify and prevent the presence of pathogenic micro-
organisms in foodstuffs2, and cleanliness standards have also been laid down for meat
premises in European Law3. A recommendation to undertake environmental monitoring of
the food preparation environment during the investigation of poor microbiological results is
also given in the HPA Guidelines for Assessing the Microbiological Safety of Ready to Eat
Foods Placed on the Market4.
The main value of determining the colony counts on a surface is to assess the cleanliness of
that surface. If a swab is taken to demonstrate that procedures used for cleaning are
effective, swabbing should be performed after the surface has been cleaned. If it is
suspected that cleaning is not being done or the methods used for cleaning are not effective
then swabbing can be done as part of a routine hygiene inspection without prior cleaning. A
Version number 2 Effective Date 17.12.13
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Detection and enumeration of bacteria in swabs and other environmental samples
high count can be an early warning of inadequate cleaning practices in food premises and
may highlight the need for further investigation but careful consideration must be given if the
surface is in use at the time of sampling. Cleaning of a surface prior to swabbing during
outbreak investigations should be avoided to maximise the possibility of detecting a
pathogen.
The method of choice for examination of surfaces is swabbing of a known area (10-100cm2)
using a sterile swab that has been moistened in 10mL of neutralising diluent. This semi-
quantitative approach enables enumeration of the micro-organisms per cm2 and can facilitate
interpretation of the results. When qualitative or detection tests only are to be performed the
area swabbed need not be known but this may limit the laboratorys ability to interpret the
significance of the results obtained. It is assumed that the sample has been taken by a
competent sampling officer who has been trained to carry out this procedure.
1.0 Principle
Three types of commercially available swabs are issued to customers by PHE
laboratories. Two contain a measured volume of commercially prepared neutralising buffer
or neutralising diluent while the third has Amies charcoal media. Neutralising buffer/diluent
is used to neutralise the effect of disinfectants that have been used to clean surfaces,
charcoal containing media has a similar effect. Surfaces are generally swabbed by the
customer (with the exception of complex investigations where laboratory staff may be
asked to assist with sampling). The laboratory provides the customer with instructions and
offers training for use of the swabs but the effectiveness of the swabbing procedure used
is often outside the control of the laboratory.
When enumeration tests are required a template enclosing a known surface area (eg10cm
x10cm) is used. Swabs in diluent are refrigerated at 2-8oC and are submitted to the
laboratory as soon as possible to ensure that they are examined on the day of collection or
at least within 24 hours of collection. The swabs are vortex mixed or homogenised to aid
release of organisms into the diluent. The swab diluent and serial dilutions if necessary are
subjected to the same methods as used for examination of food homogenates.
The target count for enumeration tests is in the range of 0 to 300 colony forming units (CFU)
per plate. Samples likely to have counts that exceed the countable limit per plate (method
dependent) must be diluted.
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Detection and enumeration of bacteria in swabs and other environmental samples
Detection of pathogens from a known surface area can be performed by addition of
enrichment media to the swab sample. In outbreak situation a large random area can also
be sampled to maximise the likelihood of detection.
Enumeration and detection test can be performed on cloths and other environmental
samples such as bottle rinses by adding measured volumes of diluent or enrichment
media.
2.0 Definitions
For definitions of target organisms refer to the corresponding PHE standard methods for
foods for the bacteria of interest.
Information Note: Throughout this method hazards are identified using red text. Where
a means of controlling a hazard has been identified this is shown in green text.
Swabs, cloths or other environmental samples that are considered to be high risk for the
isolation of VTEC O157, must be handled in a CL3 Laboratory.
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Detection and enumeration of bacteria in swabs and other environmental samples
4.0 Equipment
Top pan balance capable of weighing to 0.1g
Stomacher
Vortex mixer
Stomacher bags (sterile)
Other equipment as detailed in PHE, MS, FW&E Standard Methods
These are stored at ambient temperature and must be used before the displayed expiry
date. Instructions for use and a template are issued to the customer (see Appendix 1).
These are stored at ambient or under refrigeration (2 25C) and must be used before the
displayed expiry date. They should not be used if they appear to have dried out during
storage (the chance of swabs drying out during their shelf-life may be reduced by storing
between 2 and 8C). Instructions for use with a template are issued to the customer (see
Appendix 2).
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Detection and enumeration of bacteria in swabs and other environmental samples
These swabs are used for the detection of a single pathogen only. They are stored at
ambient or under refrigeration (2 25C) and must be used before the displayed expiry
date.
Amies charcoal swabs (eg Technical Service Consultants Ltd, product TS-5
18)
Peptone 1.0 g
Sodium chloride 8.5 g
Water 1L
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Detection and enumeration of bacteria in swabs and other environmental samples
Refer to individual food test methods for culture media and reagents.
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Detection and enumeration of bacteria in swabs and other environmental samples
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Detection and enumeration of bacteria in swabs and other environmental samples
minutes. This resulting suspension is considered to be the neat or 100 dilution. Where
enumeration is being performed in addition to the detection of pathogens neutralising
diluent should be used and 25mL, aliquoted to 225mL of the appropriate enrichment
media.
Other environmental samples including scrubbing brushes, nozzles and utensils are
placed in a sampling bag. When enumeration tests are being performed at least 100mL of
the appropriate diluent is added. These samples must be manipulated manually for at least
2 minutes, again the resulting suspension is considered to be the neat or 100 sample.
When carrying out a pathogen detection test, sufficient enrichment media must be added
to fully immerse the sample.
The bottle submitted for rinsing is removed from the sample bag aseptically. If the bottle is
intended for single use, add 20mL of PSD. If the bottle is re-usable and has been washed
add 20mL of neutralising diluent. The internal surfaces of the bottle are thoroughly rinsed
by rotating the bottle gently 12 times in one direction. The bottle is allowed to stand for 15-
30 minutes. Rinse the internal surfaces of the bottle again by rotating the bottle gently 12
times in one direction9. Using a sterile pipette transfer the bottle rinse fluid to a sterile
universal container. This is the neat or 100 sample. When carrying out pathogen detection
tests, add 100 mL of enrichment media to the bottle, rinse the bottle as described above
and transfer the broth to a closure bag or sterile container.
For all samples, dilutions should be selected that will give colony counts within the
appropriate range for the test being performed.
Using a separate sterile pipette for each dilution, aseptically transfer 0.5mL or 1mL
volumes (pour plates methods only) of the initial dilution (10 0 or 10-1) of the sample to the
appropriate medium. If necessary repeat the procedure with further decimal dilutions
prepared in PSD.
For all samples gravimetrically prepare a 10-1 dilution in the appropriate enrichment
medium. Enumeration tests can also be performed when samples have been diluted in
BPW. If multiple pathogen tests are to be performed sample homogenates can be
aliquoted to the appropriated enrichment media to achieve a 10-1 dilution.
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Detection and enumeration of bacteria in swabs and other environmental samples
Count = _____C_____ x n3
v (n1 + 0.1n2)d
where : -
If the swab is from a measured area the count can be divided by the area swabbed in cm2.
Count = _____45_____ x 10
1(1 + 0)0.01
=4.5x104
This count is the count per swab so to calculate the result per cm 2 it is necessary to divide
this by the area swabbed which in this case is 100.
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Detection and enumeration of bacteria in swabs and other environmental samples
Count = _____33_____ x 10
0.5 (2 + 0)1
=3.3x102
This count is the count per swab so to calculate the result per cm 2 it is necessary to divide
this by the area swabbed which in this case is 100.
where a is never less than 1.0 or greater than 9.9 and b represents the appropriate power
of ten. Round counts up if the last figure is 5 or more, and down if the last figure is 4 or
less.
9.1 Enumeration
Report as CFU per cm2. Include a comment on the report (eg Results expressed per cm2
are calculated using the area tested as stated by the customer).
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Detection and enumeration of bacteria in swabs and other environmental samples
9.2 Detection
If a single pathogen test has been carried out only ie no other tests performed on the sample
Report as:-
or
If more than one pathogen test has been carried out (cloths or other samples only) or
enumeration tests have been performed in addition to Salmonella (swabs) report as in swab
or in item with the comment Entire sample not tested
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Detection and enumeration of bacteria in swabs and other environmental samples
The contributions of many individuals in Food, Water and Environmental
laboratories, reference laboratories and specialist organisations who have provided
information and comment during the development of this document are
acknowledged.
E-mail: [email protected]
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Detection and enumeration of bacteria in swabs and other environmental samples
RE
References
1. Food Safety Act 1990.
4. Health Protection Agency. 2009. Guidelines for assessing the microbiological safety
of ready-to-eat foods placed on the market. London: Health Protection Agency.
5. Health and Safety Executive. Biological Agents: Managing the risks in laboratories
and healthcare premises; 2005. http://www.hse.gov.uk/biosafety/biologagents.pdf
7. Health and Safety Executive. Five steps to risk assessment: a step by step guide to
safer and healthier workplace, IND(G) 163 (REVL). Suffolk: HSE Books; 2002.
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Detection and enumeration of bacteria in swabs and other environmental samples
1. Put on a clean overcoat and wash hands thoroughly prior to sampling. Sterile gloves are not necessary
unless the sample is likely to lead to legal proceedings.
2. Select the area to be investigated. If the surface is not flat and indicator organisms are being sought
estimate the area to be swabbed.
3. If the area is flat remove a template from its bag by the handle and hold it between the thumb and index
finger of one hand. Ensure that the template does not come into contact with any other object and place in
the selected position.
4. Open the swab pack (do not remove the sterile swab from the pack at this stage).
5. Remove the lid from the tube containing neutralising buffer.
6. Remove the swab from the packaging and insert it into the neutralising buffer to moisten it. Squeeze
excess liquid from the swab by pressing the cotton tip against the side of the tube.
7. Replace the lid on the neutralising buffer tube.
8. Using the moistened swab, swab the entire template area for 30 seconds as shown in Figure 1 using firm
even pressure and rotation of the swab.
9. Remove the cap of the tube containing neutralising buffer and insert the swab. The top of the swab then
becomes the lid of the tube. Push swab firmly in place until it is fully engaged-it should click.
10. The sample should be labelled appropriately and placed in a suitable cool box in an upright position and
transported to the laboratory as soon as soon as possible to ensure it is tested on the same day or at
least within 24 hours of collection.
If indicator organisms are being sought the area swabbed in cm2 or per 100cm2 needs to be known to enable
meaningful examination. If pathogens are being sought the area swabbed is less critical in the examination.
Figure 1
A B C
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Detection and enumeration of bacteria in swabs and other environmental samples
1. Check that the swab is 2. Tear open the bag along the
within its shelf-life, the swab perforation. Feed the Sponge handle
appears wet and that the through the opening, by pushing up
bag is intact. from outside the bag. Grasp the
handle above the thumbstop and
Please note: before swabbing ensure remove the Sponge from the bag. To
that the sponge is moist but not over avoid contamination do not touch the
wet by squeezing excess diluents into space between the thumbstop and
the sample bag . sponge, or the sponge itself.
thumbstop
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Detection and enumeration of bacteria in swabs and other environmental samples
Incubate and proceed as for the
Prepare further dilutions in PSD if HPA Standard method for food
required
Count and confirm colonies as for If required refer isolate to the
the HPA Standard method for food appropriate reference laboratory
2
Calculate Count per swab, per cm ,
per cloth or per item
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