Multiskan User Manual

Thermo Scientific
Multiskan FC
User Manual
Rev. 1.4
Thermo Scientific
Multiskan FC
User Manual
Rev. 1.4, Cat. no. N07710

Copyright
Copyright 2009 Thermo Fisher Scientific Corporation. First edition published in 2008. All rights reserved.
Printed in Finland. Reproduction of the accompanying user documentation in whole or in part is prohibited.
Patents
This product is protected by the following patent: US 6111636, Device for Measuring Optical Density.
Trademarks
Immulon, Microtiter, Multiskan and SkanIt are registered trademarks of Thermo Fisher Scientific.
All other trademarks and registered trademarks are the property of their respective holders.
Disclaimer
Thermo Fisher Scientific reserves the right to change its products and services at any time to incorporate
technological developments. This manual is subject to change without prior notice as part of a continuous
product development. Although this manual has been prepared with every precaution to ensure accuracy,
Thermo Fisher Scientific assumes no liability for any errors or omissions, nor for any damages resulting from
the application or use of this information. This manual supersedes all previous editions.
No liability for consequential damages

Thermo Fisher Scientific shall not be liable for any damages whatsoever arising out of the use or inability to
use this product.
Power failure
The system requires uninterrupted power supply in order to operate correctly. Thermo Fisher Scientific has no
responsibility whatsoever for system malfunctions arising from power failures.
About This User Manual
Intended users The Multiskan FC, as standalone or with SkanIt Software, can be used
in research and routine-test laboratories by professional personnel.
How to use this This user manual is for the following instruments, Multiskan
FC/Multiskan FC with incubator: Cat. no. 51119000, 51119020,
user manual 51119050, 51119100, 51119120 and 51119150. It has been designed
to give you the information you need to:
Review safety precautions
Install the Multiskan FC
Navigate and edit in the Multiskan FC user interface
Make a protocol and measure
Perform basic cleaning and maintenance procedures
Troubleshoot the instrument performance
This user manual also describes all the features and specifications of the
Multiskan FC instrument as well as ordering information.
Read the manual in its entirety before operating the instrument.
Keep the user manual for future reference. The user manual is an
important part of the instrument and should be readily available during
use of the instrument. Keep the user manual together with the
instrument in case you distribute it onwards.
For more For PC software-related issues, refer to the Thermo Scientific SkanIt
Software for Multiskan FC User Manual (Cat. no. N07713).
information
For the latest information on products and services, visit our websites
at:
http://www.thermo.com
http://www.thermo.com/readingroom
In an effort to produce useful and appropriate documentation, we

appreciate your comments on this user manual to your local Thermo
Fisher Scientific representative.
Thermo Fisher Scientific Thermo Scientific Multiskan FC User Manual 3

Safety symbols and markings
Safety symbols These symbols are intended to draw your attention to particularly
important information and alert you to the presence of hazards as
and markings indicated.
Safety symbols and The following symbols and markings appear on the type label and the
markings used on instrument itself.
the Multiskan FC
Power ON
Power OFF
Serial number
Catalog number
Date of manufacture
Consult instructions for use
WEEE symbol This product is required to comply with the European

Unions Waste Electrical & Electronic Equipment (WEEE) Directive
2002/96/EC.
A black label with the following text (Figure 310 on page 21):
CAUTION: WARNING: DISCONNECT SUPPLY BEFORE

SERVICING and AVERTISSEMENT: COUPER
L'ALIMENTATION AVANT L'ENTRETIEN ET LE
DEPANNAGE.
4 Thermo Scientific Multiskan FC User Manual Thermo Fisher Scientific

Warning and other The following symbols and markings appear in this user manual.
markings used in
the documentation
Warning Risk of electric shock.
Warning Biohazard risk.
Warning Hot surface, risk of burns.
Warning Risk of injury to the user(s).
Caution Risk of damage to the instrument, other equipment or loss of

performance or function in a specific application.
Note Marks a hint, important information that is useful in the

optimum operation of the system, or an item of interest.


Contents
Intended users ................................................................................... 3
How to use this user manual ............................................................. 3
For more information ....................................................................... 3
Safety symbols and markings............................................................. 4
Safety symbols and markings used on the Multiskan FC ................ 4
Warning and other markings used in the documentation ............... 5
Chapter 1 Introduction to the Multiskan FC ............................................................ 11

Intended use.................................................................................... 12
Chapter 2 Installation .................................................................................................... 13

What to do upon delivery ............................................................... 13
How to unpack ............................................................................ 13
Checking delivery for completeness or damage............................. 13
Environmental requirements ........................................................ 14
Installation setups............................................................................ 14
Releasing the transport lock.......................................................... 14
Installing the filter wheel .............................................................. 16
Connecting the power supply cable .............................................. 17
Connecting to a computer............................................................... 18
Connecting to a printer................................................................... 18
Switching on ................................................................................... 18
Performing the operational check.................................................... 18
Settings after installation ................................................................. 19
Installation of SkanIt Software for Multiskan FC ............................ 19
Chapter 3 Multiskan FC Main Parts............................................................................ 21

Front view....................................................................................... 21
Back view ........................................................................................ 21
Side view ......................................................................................... 22
USB memory stick port................................................................... 22
Optical system................................................................................. 23
Incubator ........................................................................................ 24
Shaker ............................................................................................. 24
Internal memory ............................................................................. 24
Chapter 4 Operating the Internal Software............................................................... 25

Display and keys for navigating and editing .................................... 25
Keys / Action ............................................................................ 25
Chapter 5 Menus and Parameters............................................................................... 29

Main menu ..................................................................................... 29
Protocol ....................................................................................... 31

Contents
Plate format parameters................................................................ 32

Measurement parameters.............................................................. 33
Filters ........................................................................................ 33
Measurement modes ................................................................. 33
Shaking parameters ...................................................................... 34
Incubation parameters.................................................................. 34
Processing menu ............................................................................. 35
Plate layout parameters................................................................. 35
Preprocessing parameters.............................................................. 37
Precalculations .......................................................................... 39
Kinetic calculations ................................................................... 40
Calculation parameters................................................................. 47
Curve fits .................................................................................. 48
Factor........................................................................................ 50
Stored curve .............................................................................. 50
Interpretation parameters ............................................................. 50
Source data................................................................................ 52
Interpretation and limits ........................................................... 52
Quality control parameters........................................................... 53
Results menu................................................................................... 54
Raw data ...................................................................................... 55
Calculated results ......................................................................... 56
Calibration curve.......................................................................... 56
Quality control (QC) ................................................................... 57
Results in list format .................................................................... 57
Settings menu ................................................................................. 58
Chapter 6 Starting Ready-made Protocols ................................................................61

Starting a ready-made protocol with the quick keys (F1-F3)............ 61
Starting a ready-made protocol from the list.................................... 62
Chapter 7 Protocol Creation Examples ......................................................................65

Opening a new protocol.................................................................. 65
Programming a wavelength ............................................................. 65
Programming shaking ..................................................................... 66
Programming incubation ................................................................ 66
Programming a plate layout ............................................................ 68
Programming calculations and interpretations................................. 71
Programming precalculations ....................................................... 71
Programming calculations ............................................................ 72
Programming an interpretation .................................................... 73
Adding a QC rule to the protocol ................................................... 75
Saving a new (active) protocol ......................................................... 76
Chapter 8 Viewing Results............................................................................................79

Viewing results................................................................................ 79
Chapter 9 Printing, Exporting and Importing.............................................................81

Contents
Printing or exporting data ............................................................... 81

Exporting a protocol .................................................................... 82
Importing a protocol .................................................................... 83
Chapter 10 Shutdown....................................................................................................... 85
Shutting down ................................................................................ 85
Chapter 11 Modifying Settings ...................................................................................... 87

System settings ................................................................................ 87
Setting the date ............................................................................ 87
Changing the language................................................................. 87
Filters .............................................................................................. 88
Introducing a filter to the internal software .................................. 89
Removing a filter.......................................................................... 90
Printer............................................................................................. 90
Startup ............................................................................................ 90
Chapter 12 Emergency Situations ................................................................................. 91

Handling emergency situations ....................................................... 91
Chapter 13 Maintenance................................................................................................. 93
Regular and preventative maintenance ............................................ 93
Maintenance checklist .................................................................. 93
General ........................................................................................ 94
Immediate.................................................................................... 94
Cleaning a filter............................................................................... 95
Cleaning of the instrument ............................................................. 95
Disposal of materials ....................................................................... 96
Decontamination procedure............................................................ 96
Adding individual filters to the filter wheel...................................... 97
Changing the lamp........................................................................ 101
Refitting the transport lock ........................................................... 103
Maintaining a system log............................................................... 105
How to pack for service................................................................. 105
Disposal of the instrument ............................................................ 105
Chapter 14 Technical Specifications ......................................................................... 107

General specifications.................................................................... 107
Performance specifications ............................................................ 108
Safety specifications....................................................................... 109
In conformity with the requirements.......................................... 109
Chapter 15 Troubleshooting Guide ............................................................................. 111

Error and warning codes ............................................................... 111
Warnings and cautions.................................................................. 113
Electrical .................................................................................... 113
Defects and abnormal stresses..................................................... 114

Contents
Chapter 16 Ordering Information .................................................................................115

List of filters .................................................................................. 115
List of spare parts and accessories .................................................. 116
List of Thermo Scientific plates ..................................................... 116
Verification tools........................................................................... 117
Appendix A System Log...................................................................................................119
Appendix B Certificate of Decontamination ...............................................................121

Chapter 1
Introduction to the Multiskan FC
The Multiskan FC (Figure 1-1) is a high-quality filter-based microplate
photometer. It is used to measure absorbance from appropriate 96 or
384-well plate formats in the wavelength range of 340 to
850 nm. Optional incubation up to 50C can be used. The instrument
also allows shaking. The instrument has a sophisticated internal
software. It can also be connected to Thermo Scientific SkanIt Software
for Multiskan FC. Furthermore, the Multiskan FC can be connected to
plate handling devices.
The Multiskan FC is available in the following configurations:
Multiskan FC
96-well plate reading with internal shaking
Multiskan FC with incubator
96 and 384-well plate reading with shaking and incubation
Figure 1-1. Multiskan FC microplate photometer

Introduction to the Multiskan FC
Intended use
Intended use The Multiskan FC is a microplate photometer for measuring

absorbance from suitable microplates and strips in 96-well plate formats
and optionally microplates in 384-well plate formats that meet the
ANSI/SBS standards.
The Multiskan FC, as standalone instrument or with SkanIt Software,
can be used in research or routine-test laboratories by professional
personnel.
The Multiskan FC is part of an analyzing system for the end user who is
thus responsible for validation of the whole system for producing
reliable and safe results.
If the assay performance is essential for the analysis, the test result has to
be ensured with internal quality controls or with an alternative test.
It is encouraged to use Good Laboratory Practices (GLP) during the
analyzing process.
Use for self-testing is excluded.
Caution Operate the instrument only with software and hardware

specifically designed or selected for it. Thermo Fisher Scientific assumes
no liability for the use of third-party software applications.

Chapter 2
Installation
This chapter describes the installation setups of the Multiskan FC
instrument.
Warning The Multiskan FC weighs 8.5 kg [18.7 lbs.] and care must be
taken when lifting it.
What to do upon This section covers the relevant procedures to be carried out upon
arrival of the instrument.
delivery
How to unpack Move the packed instrument to its site of operation. To prevent
condensation, the instrument should be left in its protective plastic
wrapping until the ambient temperature has been reached. Unpack the
Multiskan FC instrument and accessories carefully with the arrows on
the transport package pointing upwards. Place the instrument onto a
laboratory bench.
Caution Do not touch or loosen any screws or parts other than those
specifically designated in the instructions. Doing so may cause
misalignment and will void the instrument warranty.
Retain the original packaging for future transportation. The packaging

is designed to assure safe transport and minimize transit damage. Use of
alternative packaging materials may invalidate the warranty. Also retain
all instrument-related documentation provided by the manufacturer for
future use.
If you relocate your instrument or ship it for service, refer to How to
pack for service on page 105.
Checking delivery Check the enclosed packing list against order. Visually inspect the
for completeness or transport package, the instrument and the accessories for any possible
transport damage. If any parts are missing or damaged, contact your
damage local Thermo Fisher Scientific representative or Thermo Fisher
Scientific Oy.

Installation
Installation setups
Environmental When you set up your Multiskan FC, avoid sites of operation with
requirements excess dust, vibrations, strong magnetic fields, direct sunlight, draft,
excessive moisture or large temperature fluctuations. Make sure:
the working area is flat, dry, clean and vibration-proof, and leave
additional room for cables, covers, and so on
the ambient air is clean and free of corrosive vapors, smoke and dust
the ambient temperature range is between +10C (50F) and +40C
(104F)
the humidity is low so that condensing does not occur (relative
humidity is between 10% and 80%, non-condensing).
Caution Do not operate the instrument in an environment where

potentially damaging liquids or gases are present.
Installation setups This section describes the installation setups that have to be carried out
before instrument operation.
Releasing the The instrument comes with a transport lock.

transport lock
Caution Make sure the transport lock has been released before you put
the instrument into operation.
To release the transport lock, follow these steps:
1. Open the lamp and filter wheel chamber cover (Figure 22).
Figure 22. Transport lock (inside the instrument) and transport lock tag

Installation
Installation setups
2. Unfasten the transport lock bar counterclockwise using the Allen

key supplied (Figure 23).
Figure 23. Unfastening the transport lock
3. Pull the transport lock bar out (Figure 24).
Figure 24. Pulling the transport lock out
4. Keep the transport lock bar and tag (Figure 25 on page 16) for
future relocation or transportation of the instrument.

Installation
Installation setups
Figure 25. Transport lock bar and tag removed
Installing the filter To install the filter wheel, follow these steps:
wheel
1. Unpack the filter wheel (Figure 26). It is delivered in a filter wheel
box. Check that all filters are clean and undamaged.
Position slot
Figure 26. Multiskan FC filter wheel
Caution Do not touch the filters with your bare hands.
Caution When installing the filter wheel, do not touch any other
mechanical or electronic part.

Installation
Installation setups
2. Place the filter wheel into the filter slot so that the filter wheel
numbers (1-8) face outwards (Figure 27). A magnet locking
mechanism will automatically lock the wheel in the correct position
and the optical filter position sensor will make sure the correct filter
is used during measurement.
Figure 27. Placing the Multiskan FC filter wheel into the filter wheel slot
If the filter wheel seems to be "jumping" in the filter wheel slot, you
have inserted the wheel incorrectly and the magnet is rejecting it.
Turn the wheel over.
3. Close the lamp and filter wheel chamber cover.
Connecting the To connect the power supply cable, follow these steps:
power supply cable
Warning Never operate your instrument from a power outlet that has
no ground connection. Never use a power supply cable other than the
Thermo Scientific power supply cable designed for your region.
1. Ensure that the ON/OFF switch (Figure 28 on page 18) at the

back of the instrument is in the OFF (O) position.
2. Connect the power supply to a correctly installed line power outlet

that has a protective conductor that is grounded.
3. Connect the power supply cable to the power input socket

(Figure 28 on page 18) at the back of the instrument.

Installation
Connecting to a computer
Power supply connector

USB port for printer USB port for PC
USB port for memory stick
Figure 28. Connecting the power supply cable
Connecting to a If you are using a computer with the Multiskan FC, connect the
communication cable to the USB port for the computer (Figure 28).
computer
Connecting to a If you are using a printer, connect it to the USB port for the printer
(Figure 28). The external USB printer protocol that can be used is
printer HP PCL5.
Switching on Check that all the cables are properly fitted according to the installation
instructions. Switch the instrument ON.
Caution 1) Do not switch the power off during Performing self

diagnostics. 2) Do not plug/unplug the printer cable during
Importing/Exporting data from/to the USB memory stick. 3) Do not
plug/unplug the USB memory stick during Printing or Performing
self diagnostics.
Performing the Before you take the instrument into use, make time to perform the
following operational check:
operational
check 1. Switch the instrument ON.
2. Check that the plate carrier comes out from the instrument and the
Self diagnostics passed text is shown for a while on the display.

Installation
Settings after installation
3. Press the START button twice.
4. Check that the plate carrier moves in and the measurement chamber
door closes properly.
The instrument starts the measurement. After the measurement the
plate carrier comes out. No error messages should appear on the display.
5. Press the F2 key to close the result table.
6. Press the Left arrow key twice to return to the Main menu.
Settings after If you want to change the language or add additional filters to the filter
wheel, modify the required settings in the Settings menu. Refer to the
installation instructions in Settings menu on page 58.
Installation of For installing SkanIt Software for Multiskan FC, refer to the SkanIt
Software for Multiskan FC User Manual (Cat. no. N07713).
SkanIt Software
The instrument has one computer interface: USB.
for Multiskan FC
When the instrument is connected to SkanIt Software, the Remote
mode active text is shown on the display.
The STOP button on the keypad can be used to terminate the

computer remote control.

Installation
Installation of SkanIt Software for Multiskan FC

Chapter 3
Multiskan FC Main Parts
This chapter describes the main parts of the Multiskan FC instrument.
Front view The front view of the Multiskan FC instrument is shown in Figure 39.
Display
Lamp and filter wheel Keypad
chamber cover
Measurement chamber door
Figure 39. Multiskan FC front view
Back view The back view of the Multiskan FC instrument is shown in

Figure 310.
USB port for printer USB port for PC ON/OFF switch Cooling outlet
USB port for memory stick
Power supply
connector
Warning marking
Type label
Figure 310. Multiskan FC back view

Side view
Side view The side view of the Multiskan FC instrument is shown in Figure 311.
Lamp and filter wheel

chamber cover open
Plate carrier OUT
Figure 311. Multiskan FC side view
USB memory The instrument is equipped with a USB port for an external memory
stick (Figure 28 on page 18). You can transfer measurement data to the
stick port PC and assay protocols from an instrument to another with the USB
memory stick.

Optical system
Optical system The optical system of the Multiskan FC instrument comprises the
following components (Figure 312):
Light source
The light source is a quartz-halogen lamp (Osram 64222, 6V/10W).
The lamp is normally off between measurements to prolong the service
life the lamp switches on for the measurement.
Interference filters
The filter is a special interference filter.
The wavelength is selected from one to eight filters held in the filter
wheel.
Fiber
The fiber is flexible, quartz fiber.
Fiber end optics
Fiber end optics produces a highly focused light beam, which passes
through the well to the detector.
Detector housing
The detector housing consists of a silicon photodetector, an amplifier
and lens optics.
Signal processing
The measurement electronics employed has very low noise and a wide
dynamic range.
Autoblanking
The dynamic autoblanking procedure ensures that the lamp can be off
between measurements. This will lengthen the lifetime of the lamp.
Figure 312. Optical system

Autocalibration
The lamp intensity in the Multiskan FC instrument is regulated to be
suitable for each filter during startup. This adjustment procedure is
called autocalibration.

Incubator
Incubator The optional incubator is only available with the Multiskan FC with
incubator model. The incubator chamber consists of thermal elements
on the top and bottom of the incubator chamber. The upper electrical
thermal element prevents condensation on the microplate that is being
incubated.
Background incubation is also possible during kinetic measurements.
The incubation temperature ranges from 25 to 50C (max.).
Warning The incubator thermal plates may be hot.
Shaker The linear shaker operates at three different speeds (Table 31):
Table 31. Shaking speeds
Speed name Speed
Slow 5 Hz, amplitude 15 mm
Medium 11 Hz, amplitude 3 mm
Fast 20 Hz, amplitude 1 mm
Background shaking is also possible during kinetic measurements.
Internal memory There is memory for 99 assay protocols and at least assay results for
100 microplates.

Chapter 4
Operating the Internal Software
This section describes the display and keys on the keypad for navigating
and editing the internal software of the Multiskan FC instrument.
Display and keys The keypad and display are shown in Figure 413.
for navigating
and editing
Clock Menu
Active row
Display
Info text bar
Function keys
Number keys with letters
Arrow keys and OK button START, STOP and PLATE

in/out control buttons
Figure 413. Keypad and display of the Multiskan FC
Keys / Action The relevant keys for navigating and editing are described in detail
below. The keys also have other functions depending on the level in the
internal software.
The active row is colored blue.

Display and keys for navigating and editing
Use the Left, Right, Up and Down arrow keys to navigate. You can
speed up the selection by holding down the arrow key continuously.
Use the OK button to select and edit the highlighted item. It is mostly
used for setting and accepting the active parameter.
Use the character keys to enter numerical data and text.

SPACE CHARACTER (): character code which prints a space
PERIOD (): decimal point
PLUS SIGN (+): operator
MINUS SIGN (-): operator
SLASH SIGN (/): operator
( ) and are found under the 1 / key.
Use the CLEAR (C) key to delete written text or numbers.
Use the F1-F3 keys to select the corresponding action from the info
text bar (Figure 414). The information on the info text bar is updated
according to the active menu.
Info text Protocol 1 Protocol 2 Protocol 3

bar
Function
button
Figure 414. Info text bar of the Multiskan FC user interface

In the Main menu, the F1-F3 function keys are reserved for ready-
made protocols. Demonstration protocols, Demo1-Demo3 (for
example, single measurement, kinetic measurement, dual endpoint
measurement), are set for quick selection (F1-F3 keys).
You can change the protocols for the F1-F3 keys with the FILE key in
the protocol list view.
Press the FILE key, for example, for saving the active protocol in the
Main menu. Depending on the level of the internal software, the FILE
key opens a list of actions possible for the current protocol: New, Save,
Save as, Export, Export all protocols, Import, Print and Delete.
Use the HELP for viewing more detailed instructions.

Press the PLATE in/out button to move the plate carrier in or out.
Press the START button to start microplate reading using the currently
selected protocol.
Press the STOP button to terminate the reading process. Data from the
plate in progress is lost. It can also be used to terminate the possible
computer remote control.


Chapter 5
Menus and Parameters
This section describes the menus and the relevant main parameters of
the internal software for creating and editing protocols.
The internal software includes the Main, Processing, Results and
Settings menus.
The user menu layout is displayed in Table 52.
Table 52. Program overview
Main Processing Results Settings
Protocol Plate layout Raw data System

Plate format Preprocessing Calculated results Filters
Measurement Calculation Calibration curve Printer
Shaking Interpretation Quality control Startup
Incubation Quality control Results in list format
Main menu You can specify the instrument-related parameters in the Main menu.
The Main menu contains the Protocol, Plate format, Measurement,
Shaking and Incubation parameters.
Info text bar
The clock on the Main tab shows the real time.

The Incubation icon also shows the current temperature (only
Multiskan FC with incubator model).
See the info text bar for the required actions of the F1-F3 keys. The
action text on the info text bar changes according to the level of the
internal software.
A detailed program overview of the Main menu is shown in Table 53.

Main menu
Note The parameters of the Main menu are locked when the run
(measured data) for the protocol exists. After the measurement, the plate
format, measurement, shaking and incubation parameters cannot be
changed. For more information, refer to Chapter 6: Starting Ready-
made Protocols.
Table 53. Main parameters

Main
Protocol
Protocol: Created: Modified: Runs:
Plate format
96 Wells
384 Wells
Measurement
Filter 1 (nm)
No filter
405 (#1)
450 (#2)
620 (#3)
Filter 2 (nm)
No filter
405 (#1)
450 (#2)
620 (#3)
Mode
Fast
Normal
No of readings (1-100)
1
Shaking
Mode
No
Before measurement
Background
Incubation
Temperature (C)
No
25-50
Wait for warm up
Yes
No
Time (hh:mm:ss)
00.00.00
Depending on the level of the internal software, the FILE key opens a list of actions possible for the
current protocol.

Main menu
Protocol The Protocol row in the Main menu shows the name of the active
protocol. You can open another protocol by pressing the OK button on
the Protocol row or by pressing the FILE key. The list of protocols saved
in the internal software will appear.
You can also open a particular run of the protocol in question (protocol
with measured data) with the Menu function. Also the runtime is
shown on the Protocol row. For more details on opening a protocol,
refer to Opening a new protocol on page 65.
The maximum amount of protocols available is 99.

Table 54. Protocol structure
Protocol 1
Run 1
Run 2
Protocol 2
Run 1
Run 2
Run 3
A measured run of a protocol includes run data and protocol

information for that run.
You can start the measurement of an active protocol with the name
Undefined but the results of an Undefined protocol are not saved
unless you save the active protocol, including the measured run data
with a new name.
Note If you make any changes to the processing parameters of a
measured run in the Processing menu, the changes are made to that run
only. If you want to make changes to the protocol and thereby to the
future runs, you must open the protocol, make the changes, and press
the FILE key/Save to save the changes.
Note When you press the START button, the software always loads the
saved protocol, regardless of what parameters are active on the display.
For instructions on how to start and create protocols, refer to Chapter 6:
Starting Ready-made Protocols and Chapter 7: Protocol Creation.

Main menu
Plate format You can select the plate format 96 or 384 in the Plate format window.
parameters
Note The 384 format is only available if the instrument version
supports 384-well plate measurements.
Note Use only plates manufactured according to ANSI/SBS standard

dimensions.
The dimensions of the available plates are given in Table 55 and

Table 56.
Table 55. 96-well plate dimensions
96-well plate Dimension (mm)
Plate height 14.35
Plate length 85.48
Plate width 127.76
First well position X 14.38
First well location Y 11.24
Corner distance X 99
Corner distance Y 63
Table 56. 384-well plate dimensions

384-well plate Dimension (mm)
Plate height 14.35
Plate length 85.48
Plate width 127.76
First well position X 12.13
First well location Y 8.99
Corner distance X 103.5
Corner distance Y 67.5

Main menu
Measurement You can define the measurement filter(s), number of readings and
parameters measurement mode in the Measurement window.
Filters Filter 1 defines the first (main) filter. Filter 2 defines the second
(reference) filter.
You can select the suitable filter from the list of available filters. You
must physically install the filter into the filter wheel, as well as introduce
the additional filter to the internal software of the instrument in the
Settings window. Refer to Introducing a filter to the internal software
on page 89.
Measurement modes There are two measurement modes: Normal and Fast.
The measurement head stops on each well in the Normal measurement
mode. The Normal mode produces the most accurate results with
measurement times that are fast enough for most purposes.
The head moves continuously in the Fast measurement mode. The Fast
mode produces fast results with a slightly narrower linear absorbance
range than with the Normal mode.
Number of readings sets the number of measurements per well. One
means that each well is measured only once, and two or more means
that the measurement is repeated (kinetic). The number of readings can
be anything between 1 and 100.
If the Number of readings is higher than 1, the measurement is
considered kinetic, and the interval time between the readings must be
set. Kinetic calculations can be added to the protocol.
For instructions on how to program a wavelength, for example, refer to
Programming a wavelength on page 65.

Main menu
Shaking parameters You can define the shaking parameters in the Shaking window.
You can select between no shaking, shaking before measurement and

background shaking.
The shaking speed can be set to Slow, Medium or Fast. Refer to
Table 31 on page 24.
Background shaking is active during the intervals of kinetic
measurements. The shaker shakes in sections of 5 seconds with the slow
speed.
For instructions on how to program shaking, refer to Programming
shaking on page 66.
Incubation You can define the incubation parameters, incubation time and
parameters temperature in the Incubation window.
Incubation is only active if the instrument is equipped with an

incubator. Therefore, the Incubation icon (and row) is only visible in
the Main menu of the instruments with an incubator indicating the
present temperature.
The temperature range is from 25 to 50C. Refer to Table 1417 on
page 109.
If Wait for warm up is set to Yes, the assay incubation is not started
until the temperature is reached.
Please note that the cooling of the incubation chamber takes time. If
you get the warning of Temperature is not changing, it means that the
incubator chamber is cooling slowly. It is possible to start the run

Processing menu
despite of the warning message in case the incubation temperature is not

critical for the application.
The limits for the incubation time are 00:00:00-99:59:59.
The temperature in Kelvin is calculated according to the following
equation:
K = t + 273.16
where K denotes Kelvin and t the temperature in degrees Celsius (C).
Processing You can specify the calculation parameters in the Processing menu.
These parameters supplement the parameters programmed in the Main
menu menu.
The Processing menu contains the following parameters:
Plate layout (with well information)
Preprocessing (for example, kinetic calculations)
Calculation (for example, curve fit)
Interpretation (for example, limit calculation)
Quality control (rules for quality control)
Info text bar
See the info text bar for required actions.
Plate layout You can set the plate map of the protocol in the Plate layout window.
parameters The calculations of the results are made based on the plate layout.

Processing menu
Table 57. Processing parameters

Processing / Plate layout
Plate layout
Well: A1 Name: EMPTY
Well type
Blank
Calibrator
Control
Unknown
Empty
Fill direction
Down
Right
Replicate direction
Down
Right
Number of
1
Replicates
1
current protocol.
You can start filling the plate layout on any of the wells of the plate. You
start the fill procedure from the well marked with a blue square. You
can start filling a series of samples by pressing the OK button in the
highlighted well. You can edit and delete a single well with the Edit
function.
Note Blank subtraction is made automatically if the plate layout

includes blanks. The blank used in the calculations is always an average
of the blanks included in the layout.
You can determine the sample type in Well type. The sample types are
Blank, Calibrator, Control, Unknown or Empty.

Processing menu
Note The results will not be calculated for the Empty sample type.
Note The calibrator concentrations are programmed in the Plate layout

window. You can define calibrator concentrations when you create a
calibrator series or activate a single calibrator. A calibration
concentration of 0 is not accepted.
Fill direction can be either to the right or downwards from the active
well in the Plate layout window.
Fill replicate direction can be either the same or different from the fill
samples direction in the Plate layout window.
You can define the number of samples belonging to the group, for
example, the number of different calibrators or the number of different
unknown samples in Number of. You define the number of replicates
for each sample type in Replicate.
Note The Replicate number is the same for samples, for example, for
different controls when using Add series starting from the well
programming. Use the F3 (Edit) key to program each sample
individually, if a different replicate number for the samples are
needed.
When filling the plate with the Add series function, note that adding a
group of samples of the same type to another location will delete the
first group. If you want to add the same well type into several separate
locations on the plate layout, use the Edit function.
For instructions on how to program the plate layout, refer to
Programming a plate layout on page 68.
Preprocessing You can define the preprocessing parameters in the Preprocessing

parameters window.
Preprocessing includes two different types of data processing:
precalculations and kinetic calculations.

Processing menu
Preprocessing is used with dual (two wavelength) measurements and

kinetic measurements, for example, to subtract the reference wavelength
data in dual measurements or to reduce data for kinetic measurements
in kinetic calculations.
Table 58. Processing / Preprocessing parameters
Processing / Preprocessing
Preprocessing
Pre-Calculation
No
Mea1 Mea2
Mea1 / Mea2
Mea1 + Mea2
Mea1 * Mea2
Mea2 Mea1
Mea2 / Mea1
Kinetic
Type
No
Average rate
Kinetic rate
/s
/min
Ignore from beginning
0
Ignore from end
0
Maximum rate
Kinetic rate
/s
/min
0
Ignore from end
0
Window
2
Reaction
Undefined
Increasing
Decreasing
Time to maximum rate
Kinetic rate
/s
/min
0
Ignore from end
Continued

Processing menu
Cont.
Processing / Preprocessing
0
Window
2
Reaction
Undefined
Increasing
Decreasing
Time to change
0
Ignore from end
0
Window
2
Reaction
Undefined
Increasing
Decreasing
Baseline readings
100
Readings from
Beginning
End
Change
0.00
Change type
Absolute
Relative
Maximum of well
0
Ignore from end
0
Time to maximum
0
Ignore from end
0
current protocol.
Precalculations Precalculation is used in the context of dual (two wavelength)

measurements when Filter 1 (main filter) and Filter 2 (reference filter)
are defined in the Main menu.
The purpose of the precalculation is to merge the data from the two
measurements into one data set, which can then be further processed,
for example, using kinetic calculations or a curve fit.

Processing menu
The most common example of precalculation is the subtraction of the

reference wavelength, where absorbance values of Measurement 2
(measured with Filter 2) is subtracted from the absorbance values of
Measurement 1 (measured with Filter 1). Also the sum, multiplication
and ratio precalculations between the absorbance values of Measurement
1 (measured with Filter 1) and the absorbance values of Measurement 2
(measured with Filter 2) are available:
Kinetic calculations Kinetic calculations can be used when the number of readings is more
than 1 in the measurement parameters (see Measurement parameters on
page 33). Also the results of a kinetic calculation can be used as source
data for further calculations.
The available kinetic calculation types are:
Average rate
Maximum rate
Time to change
Maximum of well
Time to maximum
Average rate
Average rate is also known as normal rate. The average kinetic rate
(slope of the absorbance (Abs) vs. time curve) is calculated by linear
regression (linear least squares method or LLS) using all the
measurement readings within the selected raw data and time range.
You can define the following settings:

Processing menu
Kinetic rate Select to view the results in either seconds (s) or

minutes (min). The Kinetic rate is always calculated per second but
if you select per minute, the time is automatically converted to
minutes after the calculations.
Ignore from beginning Ignores a defined number of points
(readings), counted from the first reading.
Ignore from end Ignores a defined number of points (readings),
counted from the last reading.
Maximum rate
If the maximum rate is selected, the software searches the data for the
maximum rate found in each well. To obtain the maximum rate, a series
of linear curve fits will be performed for different segments of the
measurement value, absorbance vs. time curve (Figure 515). The first
segment starts at the first data point within the selected time and
measurement range, the second segment starts at the second data point,
and so on, until all the data points have been analyzed. All the rate
calculations are evaluated to determine the maximum rate. In other
words, the LLS fit of m span points are sequentially fitted through each
of the n data points. There will be n - m + 1 curves produced from this.
You can specify the number of data points in a segment with the
Window setting.

Processing menu
Figure 515. Determining the maximum rate with window value 2

Reaction Define whether the reaction is supposed to produce

increasing or decreasing signal levels. There are three options for this
setting:
Undefined (default) The reaction can be increasing,
decreasing or both (for example, first increase and then
decrease, that is, peaking). The software does not produce
any warnings in either case. It searches for the absolute
maximum rate. If the highest absolute rate value is
increasing, it is shown as a positive number. If the maximum
rate is decreasing, it will be presented with the prefix -.
Increasing The software searches for the maximum
increasing rate. The rate is shown as a positive number. If no
increasing rate is found, the result is NaN (not a number).
Decreasing The software searches for the maximum
decreasing rate. The rate is shown as a positive number. If
no decreasing rate is found, the result is NaN (not a
number).

Processing menu
Kinetic rate Select to view the results in either seconds (s) or

minutes (min). The kinetic rate is always calculated per second but
if you select per minute, the time is automatically converted to
minutes after the calculations.
Window Select the number of consecutive readings to use for
evaluation. The highest reaction rate for each well is calculated using
a sliding window. A window defines how many measurement points
are included in the measurement calculations. The size of this
window is given in the Window parameter box. For example, if the
number of measurements is ten and the Window parameter is three,
the system will calculate the first rate using the measurements 1 to 3,
the second rate using the measurements 2 to 4, and so on up to
measurements 8 to 10. The maximum rate will be the maximum
value among these calculated rates.

The time to maximum rate is calculated similarly to the maximum rate,
but the result is reported as the time in seconds from the first reading to
the point on the line where the maximum rate occurs instead of the rate
itself. Refer to Figure 516 on page 43.
Figure 516. Determining the time to maximum rate

Processing menu

setting:
Undefined Searches for the absolute maximum rate, and
returns the corresponding time.
Increasing Searches for the maximum increasing rate and
returns the corresponding time. If no increasing rate is
found, the result is NaN (not a number).
Decreasing Searches for the maximum decreasing rate,
and returns the corresponding time. If no decreasing rate is
found, the result is NaN (not a number).
Window The number of consecutive readings to use for
evaluation.
Time to change
The time to change is used for calculating the time required to reach a
defined change in the signal (in each well). The time is given in seconds
or minutes from the first reading.
First define the base value by entering the number of readings from the
start in baseline. The base value is the average of results of the given
baseline count from the beginning or end of results. Then select whether
the change from the base value is evaluated as a relative (%) or an
absolute value and define that percentage or value. This change is then
added to the base value to create a required change value. The average of
the sliding window is compared to the limit. The result is the exact
interpolated time where the given change occurs.

Processing menu

Window The number of consecutive readings to use for
evaluation.
setting:
Undefined Searches for the defined change in signal,
regardless of the rate polarity (positive or negative), and
returns the corresponding time.
Increasing Searches for the increasing defined change in
signal, and returns the corresponding time. If no increasing
rate is found, the result is NaN (not a number).
Decreasing Searches for the decreasing defined change in
signal, and returns the corresponding time. If no decreasing
rate is found, the result is NaN (not a number).
Baseline readings The Baseline readings parameter is the number
of initial readings, calculated from the beginning (first) or end (last)
of the measurement, used for the baseline calculation. The baseline
can also be zero, which means that the comparison will be made
against zero. In the Baseline readings the software chooses as many
measurement points as exist in the baseline and calculates the mean
thereof. The mean equals the baseline value. If last is selected, the
change is searched starting from the end of the measurement.
Readings from There are two options for this setting: Beginning
(default) or End.
Change The change in signal is specified and compared to the
baseline.
Change type The relative change from the baseline in percent or
the absolute change. The default is Absolute.

Processing menu
Maximum of well
The maximum of well is used to search for the maximum measurement
value in each well.

Time to maximum
The time to maximum is used to calculate the time elapsed before the
maximum measurement signal in each well is reached.


Processing menu
Calculation You can define the calculation parameters in the Calculation window.
parameters The available calculation types are: curve fits and factor.
You can select different calibrator curve fit types for quantitative
calculation or a factor. You can also use a stored curve for quantitative
calculation.

Note The plate layout must include calibrators to enable them for
further calculations, for example, curve fits. Refer to Curve fits on
page 48.

Processing menu
Table 59. Processing parameters / Calculation

Processing / Calculation
Calculation
Type
No
Linear regression
Conc. Transfor.
Linear
Logarithmic
Meas. Transfor.
Linear
Logarithmic
Extrapolation
Yes
No
Four parameter logistic
Cubic spline
Conc. Transfor.
Linear
Logarithmic
Meas. Transfor.
Linear
Logarithmic
Point to point
Conc. Transfor.
Linear
Logarithmic
Meas. Transfor.
Linear
Logarithmic
Factor
Value
1.000
current protocol.
Curve fits The curve fits types of the calibrators are:

Linear regression
Cubic spline
Point to point

Processing menu
Linear regression
Linear regression is a term usually reserved for the simple linear model
involving a response, y, that is, a continuous variable and a single
explanatory variable, x, related by the equation
y = a + bx
where y denotes the expected value.
The minimum number of calibrators for this fit type is two.
Extrapolation is only available for the linear regression fit type.

The four-parameter logistic method uses the fit model below:
ab
y =b+
1 + ( xc) d
In the equation above, y is the signal, x the concentration, a the response
at high asymptote, b the response at low asymptote, c the
1/concentration corresponding to 50% specific binding, and d the slope
factor.
The minimum number of calibrators for this fit type is five.
The Concentration logarithmic transformation is not available for this
fit type.
Extrapolation is not available for the four-parameter logistic fit type.
Cubic spline
This method is a smoothed point-to-point method where the adjacent
calibration points are connected together using cubic polynomials (see
the equation below) and optimizing the connecting points as smoothly
as possible to avoid sharp angles. The results are calculated by first
searching for the correct interval and then using a bisectional method to
find the answer from the corresponding equation. The minimum
number of calibrators for this fit type is five.
yi = ai + bixi + cixi2 + dixi3
Extrapolation is not available for the cubic spline fit type. Only the
means of the measured calibrator replicates can be used, not the
individual replicate values.

Processing menu
Point to point
The point-to-point method connects the adjacent response-
concentrations coordinates, that is, the calibration points, together using
a straight line (see the equation below), which is different for each of the
intervals. The results are calculated by first searching for the correct
interval and then using the corresponding equation. The minimum
number of calibrators for this fit type is two.
yi = ai + bixi
Extrapolation is not available for the point-to-point fit type. Only the
means of the measured calibrator replicates are used in the calculations.
The replicates are visible in the graph but they are not used in
calculations.
Factor Measured absorbances are multiplied with a factor given by the user to
obtain the concentrations. The concentration is calculated according to
the following equation:
Concentration = Factor x absorbance
Stored curve You can use a stored curve for an assay (a run). You can only use a
stored curve with the protocol it was created with. After the curve has
been stored, the plate layout may be modified to contain, for example,
only unknowns. You can save the curve from the curve window using
FILE/Save calibrators and load it using FILE/Load curve.
Note The stored curve must be older than the measured run data. This
means that if a new curve is stored, the earlier saved assay run data
cannot be recalculated against the new curve.
Interpretation You can define the qualitative calculation (classification) in the

Interpretation window.
parameters

Processing menu
Table 510. Processing parameters / Interpretation

Processing / Interpretation
Interpretation
Source data
Interpretation 1
Limit 1
Sample
BLA
Raw Blanked Dual Kinetic Concentration*
CAL1-CAL12
CTRL1-CTRL5
Operator
+ - * / ( )
Constant
1.00
Function
SD CV%
Delete
Interpretation 2
Limit 2
Sample
BLA
CAL1-CAL12
CTRL1-CTRL5
Operator
+ - * / ( )
Constant
1.00
Function
SD CV%
Delete
Interpretation 3
* The pop-up menu appears when you double-click Sample.
current protocol.
Interpretation (classification) can be used in a qualitative assay (a run),

where no absolute concentration is calculated, and it can also be used for
a quantitative assay (a run) when the interpretation is made based on the
calculated concentration.
In a qualitative classification analysis (interpretation), the results are
divided into separate categories. The data is categorized using cutoff
values (Limit 1 and Limit 2) for up to three different categories.

Processing menu
The limits (cutoff values) can be set as a number, a formula, a specified

sample, or a formula containing both samples and numbers.
The absorbances or concentrations of the samples are compared to the
limits and defined, for example, as negative or positive.
Source data You must define the Source data for the interpretation calculation. The
source data used for interpretation can include the following data types:
Raw absorbances (Raw)
Blank subtracted absorbances (Blank)
Precalculated absorbances (Dual)
Preprocessed kinetic values (Kinetic)
Calculated concentrations
For further information, refer to Preprocessing parameters on page 37.
Interpretation and limits
An interpretation calculation always contains at least one limit and two

categories. Refer to Figure 517 on page 53.
Interpretation 1 is a typed name for the sample result in the category less
than Limit 1, for example, Neg.
Interpretation 2 is a typed name for the sample result in the category of
higher than Limit 1 but less than Limit 2, for example, Pos.
Interpretation 3 is a typed name for the sample result in the category of
higher than Limit 2, for example High pos.
The interpretation limits can be entered with an editor. The editor
contains the following items:
Sample You can select a sample to be used for a limit calculation.
The Sample types can be blank (BLA), Calibrator (CAL1-CAL2) or
Control (CTRL1-CTRL5). If the sample has replicates, the average
value of these is automatically selected. Both raw and calculated data
of a sample can be used as a criteria.
Operator One of the following can be chosen to be used in the
formula: +, -, *, / or ( ).

Processing menu
Constant is the numeric value used for the calculation. A constant

can be entered with the number keys on the keypad.
Function can be a standard deviation (SD) or a coefficient variance
percentage (CV%). SD calculates the standard deviation of the
sample. CV calculates the coefficient of variation for the sample.
Delete deletes the created formula digit by digit.
Figure 517. Interpretation and limits

For instructions on how to program an interpretation to the protocol,
see Programming an interpretation on page 73.
Quality control Quality control (QC) is used to program rules for quality control and
parameters thereby ensure that the assay works as expected. You can set a maximum
of four QC rules per protocol.

Results menu
Table 511. Processing parameters / Quality control

Processing / Quality control
Quality control
Enable quality control
Yes
Rule 1
Rule 2
Rule 3
Rule 4
No
current protocol.
The rules (formulas) can be entered with a QC rule editor. The editor
contains the following items:
Sample Select the sample to be checked. It can be any of the
calibrators or controls present in the layout or the blank. If the
sample has replicates, the average value of these is automatically
selected for the QC check. Both raw and calculated data of a sample
can be used as a criteria.
Operator One of the following can be chosen to be used in the
formula: +, -, *, /, (, ), > or <.
Constant A constant can be entered with the number keys on the
keypad.
Function SD or CV% of a sample can be added. SD calculates the
standard deviation of the sample. CV calculates the coefficient of
variation of the sample.
Delete deletes the created formula digit by digit.
For instructions on how to add a QC rule to a protocol, refer to
Adding a QC rule to the protocol on page 75.
Results menu You can view the results of a measured run (assay) in several formats in
the Results menu, depending on the protocol settings in the Processing
menu: raw data in list and table format, calculated results in list and
table format, and graphs (calibration and kinetic curves).

Results menu
Info text bar
The assay data that is linked to the protocol consists of raw data and all
the information needed for calculations programmed in the Main and
Processing menus.
The result of the previously run assay protocol (measured protocol) is
shown as default (if exists). When another protocol is selected from the
Main menu, the result view is cleared to avoid any conflicts.
Note The instrument measures the absorbance with four decimals.

Absorbance data is presented with three decimals. However, all
measured decimals are used in further calculations.
Note Results over 4 Abs are calculated but they are struckthrough, and
interpretations for these results are not given.
Raw data You can see the unprocessed data (raw absorbances) of the assay in the
Raw data window.
You can disable/enable samples and sample replicates from the raw data
by pressing the OK button. Select Disable and press the OK button.
You can print or export the selected data. For further information, refer
to Chapter 8: Viewing Results.

Results menu
Calculated results The calculated results are shown in the Calculated window.

Note The results of precalculations are not available in the data view.
They are only available in exported or printed reports.
The kinetic timing is relative. This means that each time point is
calculated from the first measurement point with the filter.
Calibration curve The calibration curve is shown in the Calibration curve window.
The report also includes the calculated fit parameters of the curve.
You can use both the curve on the plate and a previously created
calibration curve of the same assay protocol. You can store a curve for
future use with the FILE function. You can load a saved curve for the
active protocol with the FILE function.
If a stored curve is in use for calculation, the calibrators measured with
the current plate can be taken into use with the Menu function.

Results menu
Note The plate layout must include calibrators to enable them for
further calculations, for example, curve fits. Refer to Curve fits on
page 48.
Note Verify the correctness of the calibration curve.
You can disable and enable calibrator replicates from the curve by
pressing the OK button in the Calibration curve window.
Quality control (QC) You can view the quality control data in the Quality control window.
If the QC rules are not fulfilled and the assay is therefore not valid, the
QC view is not opened until after the measurement.
Results in list format The assay results can be viewed in list format in the Results in list
format window.

Settings menu
Settings menu You can set the instrument parameters in the Settings menu.
The values shown in the Settings menu remain in the instrument
memory and are instrument-specific, not protocol- specific.
You can define System, Filters, Printer and Startup settings.
For instructions on how to modify different settings, refer to Chapter
11: Modifying Settings.
Info text bar

Settings menu
Table 512. Settings parameters

Settings
System
Date
22.09.2008 14:19:01
Date format
dd-mm-yyyy
dd/mm/yyyy
dd.mm.yyyy
yyyy-mm-dd
mm/dd/yyyy
Time format
12 hour
24 hour
Language
English
Russian
French
Spanish
Chinese
Japanese
Portugese
German
Filters
Wavelength
405 (1)
450 (2)
620 (3)
Comment
Printer
Printer parameters
Enable header
Yes
No
Header text
For example, Laboratory 123
Startup
Plate position
In
Out
Temperature (C)
No
25-50

Settings menu

Chapter 6
Starting Ready-made Protocols
Starting a ready-made Use the F1-F3 function keys reserved for ready-made, demo or favorite
protocols to measure routine assays quickly. Three default protocols can
protocol with the be connected to the F1-F3 keys. You can change these protocols from
quick keys (F1-F3) Protocol > OK > FILE > Quick Key > Set/Clear F1-F3.

self diagnostics.
To start a ready-made protocol shown on the info text bar with the
quick keys (F1-F3), follow these steps:
1. Press, for example, the F1 key (Demo1) in the Main menu.
2. If the plate carrier is inside the instrument, press the PLATE in/out
button. Insert the assay microplate so that the A1 corner is
positioned in the top left corner of the plate carrier (Figure 618).
Figure 618. Multiskan FC plate carrier

Starting a ready-made protocol from the list
3. Press the START button.
4. Enter the unknown count with the number keys.

to
5. Press the START or OK button to accept the selection and to start

the measurement.
Note If you want to cancel the run, press the F2 key.
6. The microplate is measured and the results are automatically

calculated according to the predefined protocol.
Note During the run you can press the STOP button to abort the
run.
7. Press the F2 key to close the result table, and then press the Left
arrow key twice to return to the Main menu.
Note The main parameters are locked when a run (measured data) for
this protocol exists.
Refer to Chapter 13: Maintenance.
Starting a ready-made To start a ready-made protocol from the protocol list, follow these steps:
protocol from the list
self diagnostics.
1. Press the OK button on the Protocol row in the Main menu

OR
Press the FILE key in the Main menu and select Open using the
Down arrow key, and then press the OK button.

Example protocol list
2. Select the ready-made assay protocol you want to run from the
protocol list using the Down arrow key, and then press the OK
button.
Note The protocol name selected is shown on the Protocol row in the
Main menu.
3. If the plate carrier is inside the instrument, press the PLATE in/out
button. Insert the assay microplate so that the A1 corner is
positioned in the top left corner of the plate carrier.
4. Press the START button.
5. Enter the unknown count with the number keys.

to
6. Press the START or OK button to accept the selection and to start
the measurement.
Note If you want to cancel the run, press the F2 key.
7. The microplate is measured and the results are automatically

calculated according to the predefined protocol.
Note During the run, you can press the STOP button to abort the
run.

8. Press the F2 key to close the result table, and then press the Left
arrow key twice to return to the Main menu.
Note The main parameters are locked when a run (measured data) for
this protocol exists.
Refer to Chapter 13: Maintenance.

Chapter 7
Protocol Creation Examples
This section provides examples on how to open a new protocol, how to
program main parameters (wavelength, shaking, incubation), the plate
layout and precalculation, calculation and interpretation parameters,
and how to save the protocol.
Note Ensure that you save the changes you make in each step. Refer to
Saving a new (active) protocol on page 76.
Opening a new To open a new protocol, follow these steps:

protocol
1. Press the FILE key in the Main menu.
2. Select New and press the OK button.
Programming a To program a wavelength, follow these steps:

wavelength
1. Select the Measurement row in the Main menu using the Down
arrow key and press the OK button.
2. Press the OK button at the Filter 1 (nm) item and select, for
example, 450 as the filter 1 value using the Down arrow key, and
then press the OK button.

Programming shaking
3. Press the F1 key to accept the selection and return to the Main
menu.
Programming To program the shaking parameters, follow these steps:

shaking
1. Select the Shaking row in the Main menu using the Down arrow
key and press the OK button.
2. Press the OK button at the Mode item and select, for example,
Before measurement as the shaking mode using the Down arrow
key, and then press the OK button.
3. Select the Speed item using the Down arrow key and press the OK
button.
4. Select, for example, Fast as the shaking speed using the Down
arrow key, and then press the OK button.
5. Select the Time (hh:mm:ss) item using the Down arrow key and
press the OK button.
6. Select, for example, 20 seconds (= 00:00:20) as the shaking time by

to , using the number keys, and then press the OK button.
7. Press the F1 key to accept the selection and return to the Main
menu.
Programming You can set the incubation time and temperature in the Incubation
window.
incubation
Note The Incubation row is only active with the Multiskan FC with
incubator model.

Programming incubation
1. Select the Incubation row in the Main menu using the Down
arrow key and press the OK button.
2. Press the OK button on the Temperature row and use the Down
arrow key to select the preferred temperature from the list. The
temperature range is from 25 to 50C. Then press the OK button.
3. If Wait for warm up is set to Yes, the assay will not start until the
temperature is reached. If Wait for warm up is set to No, the assay
will start.
4. Select the Time (hh:mm:ss) item using the Down arrow key and
5. Select, for example, 5 min (00:05:00) as the incubation time by

using the number keys, and then press the OK button.
to ,
6. Press the F1 key to accept the incubation parameters.

Programming a plate layout
Programming a You can start filling the plate layout on any of the wells of the plate.
You start the fill procedure from the well marked with a blue square.
plate layout You can start filling a series of samples by pressing the OK button in the
highlighted well. You can edit and delete a single well with the Edit
function.
In this example
a blank sample
Calibrator 1 (Conc. 1)
a control sample, and
91 unknown samples
are programmed.
To create the plate layout of this example protocol, follow these steps:
1. Select the Plate layout row in the Processing menu using the
Right arrow key. Then press the OK button to open the Layout
window.
2. Press the OK button to start filling the plate from well A1.
3. Select the Well type item in the Add series starting from well: A1
window and press the OK button.
4. Select, for example, a Blank sample using the Up arrow key, and

5. Press the F1 key to accept the selection and return to the Layout
window (well A2).
6. Select well B1 using the Down and Left arrow keys and press the
OK button to start filling the plate from well B1.
7. Select the Well type item in the Add series starting from well: B1
8. Select, for example, a Calibrator sample using the Up arrow key,

and then press the OK button.
9. Select the Number of item using the Down arrow key and press
the OK button.
10. Select, for example, 3 by using the number keys, and then press the
to , OK button.
11. Press the F3 (Conc.) key to program the concentrations for the
calibrators.
12. Select the Cal 1 item using the Down arrow key and press the OK
button.

13. Enter, for example, 1 (1.00) as the Cal 1 concentration using the
to ,
number keys, and then press the OK button.
button.
to , number keys, and then press the OK button.
button.
to , number keys, and then press the OK button.
18. Press the F1 key to accept the concentrations and return to the
previous view, i.e., the Add series starting from well: B1 window.
19. Press the F1 key to accept the concentrations and to return to the
Layout window.
20. Press the OK button to start filling the plate from well E1.
21. Select the Well type item in the Add series starting from well: E1
22. Select, for example, a Control sample using the Up arrow key, and
window.

Programming calculations and interpretations
24. Press the OK button to start filling the plate from well F1.
25. Select the Well type item in the Add series starting from well: F1
26. Select, for example, an Unknown sample using the Up arrow key,
27. Select the Number of item using the Down arrow key and press
the OK button.
28. Select, for example, 91 using the number keys, and then press the
to , OK button.
window. The filled wells will show the following colors: white for
blank wells, green for calibrators, bright green for controls, and
blue for unknowns.
30. Press the F1 key again to accept the plate layout and to return to
the Processing menu.
Programming In this section examples of programming calculations or interpretations

are described.
calculations and
interpretations
Programming Preprocessing carries out calculations that are normally made as a first
precalculations step in result handling, that is, preprocessing and kinetic calculations.
Precalculation is used with dual (two wavelength) measurements, for
example, subtracting the reference wavelength from the assay
measurement wavelength.

1. Select the Preprocessing row in the Processing menu using the

Down arrow key and press the OK button.
2. Select the Precalculation type and press the OK button. Select, for
example, Mea1-Mea2 using the Down arrow key and press the OK
button.
3. Press the F1 key to accept the precalculation.
4. Press the Left arrow key to return to the Main menu.
Programming To program calculations, follow these steps:

calculations
1. Select the Calculation row in the Processing menu using the
2. Select Type and press the OK button.
3. Select, for example, Linear regression as the calculation type

(calibrator curve fit) using the Down arrow key, and then press the
OK button.

4. Press the F1 key to accept the selection.
Programming an The following example shows how to add an interpretation to a

interpretation protocol.
The interpretation limit in this example is the absorbance of the negative
control + 0.05 Abs. The samples below the limit are categorized as
negative (Neg) and the samples above it as positive (Pos).
1. Select the Interpretation row in the Processing menu using the

2. Select Source data and press the OK button.
3. Select, for example, Blanked using the Down arrow key, and then
4. Select Interpretation 1 using the Up arrow key and press the OK

button.

5. Enter the category name, for example, Neg, by using the letter keys
and press the OK button.
to ,
6. Select Limit (negative) using the Up arrow key and press the OK
button.
The limit editor is opened.
7. Select Sample and press the OK button.
8. Select CTRL 1 by using the Down arrow key and press the OK
button.
9. Select Raw and press the OK button.
10. Select Operator using the Right arrow key and press the OK
button.
11. Select + and press the OK button.
12. Select Constant using the Right arrow key and press the OK
button.
13. Enter the constant, for example, 0.050, using the number keys and
to , press the OK button.
14. Press the F1 key to accept the formula.
15. Select Interpretation 2 using the Up arrow key and press the OK
button.

Adding a QC rule to the protocol
16. Enter the category name, for example, Pos (positive), using the
to , letter keys, and then press the OK button.
17. Press the F1 key to accept the interpretation.
Adding a QC rule The rules are normally given in the kit insert and can read, for example,
the absorbance of Blank has to be smaller than 0.100 Abs. In this case the
to the protocol rules to be entered would be: Sample: Raw(BLA), Operator: <, Constant:
0.100.
The following example shows how to add a Quality Control (QC) rule
to a protocol.
1. Select the Quality Control row in the Processing menu using the
2. Press the OK button on the Enable quality control and select Yes
using the Up arrow key, and then press the OK button.
3. Select the Rule 1 row using the Down arrow key and press the OK
button.
4. Select Sample and press the OK button.

Saving a new (active) protocol
5. Select BLA (blank) and press the OK button.
6. Select Raw and press the OK button.
7. Select Operator using the Right arrow key and press the OK
button.
8. Select < using the Down arrow key and press the OK button.
9. Select Constant using the Right arrow key and press the OK
button.
10. Enter the constant, for example, 0.100 using the number keys and
to , press the OK button.
11. Press the F1 key to accept the Rule 1 formula.
12. Press the F1 key to accept the Quality control parameters and to
return to the Processing menu.
Saving a new To save a new (active) protocol that is open in the menu, follow these
steps:
(active) protocol
1. Press the FILE key in the Main menu.
2. Select Save As using the Down arrow key and press the OK button.
The Save Protocol As dialog opens.
3. Enter the protocol name, for example, Test1, by using the number
to , and letter keys, and then press the OK button.

Note You cannot use the protocol name Undefined.
Note The results of an Undefined protocol are not saved unless you
save the active protocol, including the measured run data with a new
name.


Chapter 8
Viewing Results
Viewing results The results can be viewed in several formats (depending on the protocol
settings): raw data in list and table format, calculated results in list and
table format and graphs (calibration or kinetic curves).
You can disable/enable samples and sample replicates from the raw data
in table format.
After the run has finished, the data view of a run is automatically
shown.
The order of the data views (results) to be shown is according to the

following list, depending on which calculations were used in the
protocol:
Assay quality control (if failed). The results of a failed run are
flagged.
Interpretation
Quantitative results
Precalculated results
Raw data
1. Press the F3 (Menu) key to enable menus of different data views in

order to view them.

Viewing Results
Viewing results
2. Select another data view using the Up and Down arrow keys and
3. Press the FILE key in the data view to print or export a data view.
Select Export As Text or Print using the Down arrow key if
necessary, and then press the OK button.
4. Press the F2 key to close the data view.
5. Select another row from the Results menu using the Up and
Down arrow keys and press the OK button. To view different data
views or to print, refer to Steps 2-4.
6. Press the F2 key to close the data view.

Chapter 9
Printing, Exporting and Importing
The calculated results or stored protocols can be printed after the
measurement using the FILE key. The printout is sent to the external
printer according to the general settings of the instrument. The printed
data can be selected.
The report to be printed can be defined by FILE/Print/Define Report in
the main level of Results.
Each active data table can also be defined by using FILE/Print.
Note It is recommended to format the USB memory stick if export or

import fails.
Printing or This section provides information on how the active run data (measured
results) can be printed or exported to the USB memory stick. Follow
exporting data these steps:
1. If you are exporting data, insert the USB memory stick into the
USB memory stick port of the instrument
OR
If you are printing data, ensure that the printer is connected and
switched on.
2. In the Main menu, press the Right arrow key continuously till you
get to the Results menu.
3. Press the FILE key.

Printing or exporting data
4. Select Export Results As Text or Print Results and press the OK

button.
5. The Define export/Print box is opened. Select the information you

want using the Down arrow key and tick the check box with the
OK button.
6. Press the F1 key to accept the desired data.
Data is exported to the USB memory stick or printed to the

external printer depending on the selection.
Run information includes all protocol and processing parameters.

The naming of an export file is automatic with a running number, that
is, the instrument searches for the first number available.
Note The data format should be UTF 8 when the *.txt file is opened
in, for example, Microsoft Excel.
Note The internal software uses 32-bit floating point numbers in

processing.
Exporting a protocol The calculated results or stored protocols can be exported to the USB
memory stick via the USB port (Figure 28 on page 18) by using the
FILE key. Runs, including protocol information and data, can be
exported. Protocols can be exported and imported to another Multiskan
FC instrument with the same configuration. Import of runs is only
possible to the same instrument as backup.
In the main level of Results, the results or protocols to be exported can
be defined by FILE/Export.
A protocol can be transferred from an instrument and imported to
another instrument. To export a protocol, follow these steps:

1. Insert the USB memory stick into the USB memory stick port of
the instrument.

OR
Press the FILE key and select Open using the Down arrow key and
3. Select the protocol you want to export from the protocol list using
the Up or Down arrow key.
4. Press the FILE key and select Export using the Down arrow key.
Then press the OK button.
5. If you also want to export the runs that are created (measured) with
the protocol, press the OK button. If not, press the Right arrow
key, and then the OK button.
Protocol information will be exported.
6. Press the F2 key to close the protocol list and return to the Main
menu.
Importing a protocol To import a protocol, follow these steps:
1. Insert the USB memory stick into the USB memory stick port of
the instrument.


OR
Press the FILE key in the Main menu and select Open using the
Down arrow key. Then press the OK button.
3. Press the FILE key and select Import using the Down arrow key,
4. Select the protocol you want to import from the USB protocol list
using the Up or Down arrow key and press the OK button.
Note You can only import the runs to the same instrument they were
created with. You can also import the protocol to an instrument with
the same configuration.
5. Press the F2 key to close the protocol list and return to the Main
menu.

Chapter 10
Shutdown
Shutting down To shut down the Multiskan FC, follow these steps:
1. Remove any plates still in the instrument.
2. Press the PLATE in/out button. Make sure the plate carriage goes
inside the instrument and check that the measurement chamber
door closes properly.
3. Switch OFF the instrument.
4. If you have spilt infectious agents on the instrument, disinfect with

70% ethanol or some other disinfectant (see Decontamination
procedure on page 96).

Shutdown
Shutting down

Chapter 11
Modifying Settings
You can modify settings related to the system, filters, printer or startup
in the Settings menu.
System settings The Multiskan FC instruments internal software version, serial number
and model are shown in the System settings window. Model 1 refers to
Multiskan FC and Model 2 to Multiskan FC with incubator.
You can set the date, date and time format, and language in the
System settings parameter window.
Select the item to be changed with the Up and Down arrow keys and
Setting the date You can change the date in the System settings.
The Left and Right arrow keys are used to move from one position to
another in the Date setting. Enter the values with the number keys.
, to
Changing the You can set the internal software language by moving to Language and
language selecting the preferred language from the drop-down list.
To change the internal software language, follow these steps:

Modifying Settings
Filters
1. In the Main menu, select the Settings menu using the Left arrow
key.
2. Select the System row and press the OK button.
3. Select the Language item using the Down arrow key and press the
OK button.
4. Select the internal software language, for example, Francais, using

the Down arrow key, and then press the OK button to accept the
selection.
5. Press the F2 key to confirm the selection and to close the system
parameters.
6. Return to the Main menu using the Right arrow key.
Filters Multiskan FC comes with installed filters of 405 mm, 450 mm and
620 mm.
You can introduce a filter to the internal software by moving to the
Filters settings. The filter wavelength must be between 340 and
850 nm.
The Filters settings window shows the current filters of the filter wheel.

Modifying Settings
Filters
Introducing a filter This section provides an example on how to enter the information of an
to the internal additional filter, which has been added to the filter wheel. To introduce
a filter to the internal software, follow the given steps.
software
Note Before introducing the additional filter to the internal software,

make sure the filter is physically inserted into the next free filter position
in the filter wheel and the filter wheel is placed into the filter wheel
slot.
1. In the Main menu, select the Settings menu using the Left arrow
key.
2. Select the Filters row using the Down arrow key and press the OK
button.
3. Select the empty filter position by pressing the Right arrow key
until the filter wheel on the display rotates to the empty position
and the text Empty is shown.
4. Press the OK button. Enter the wavelength of the filter, for

example, 492, with the number keys, and then press the OK
to , button.
5. Press the F1 key to accept the filter settings.
Note The instrument starts the filter initialization.
6. Press the Right arrow key to return to the Main menu.

Modifying Settings
Printer
Removing a filter You can remove a filter from the instrument settings by selecting the
position and pressing the F3 (Remove) key.
Note The filter must physically be removed from the filter wheel.
Printer You can add a header in the Printer parameter window, for example,
the laboratory information, to all of the reports to be printed. You can
do this by selecting Yes for the Enable header.
The maximum length of the header is about 50 characters.
Startup In the Startup parameters, the Plate position setting defines the plate
carrier position after the instrument is switched on.
You can set the startup temperature. The instrument starts to warm up
to the set temperature immediately after it has been switched on.
Note The set startup temperature is only activated when the instrument
is powered (switched on). The temperature set in the protocol overrules
the startup temperature. If the protocol does not include incubation, the
startup temperature remains.

Chapter 12
Emergency Situations
Handling In case there is any abnormal situation during the operation, such as
fluids spilling inside the instrument, follow these steps:
emergency
situations 1. Switch OFF the instrument (Figure 310 on page 21).
2. Unplug the instrument immediately from the power supply

(Figure 28 on page 18).
3. Carry out appropriate corrective measures. However, do not

disassemble the instrument.
4. If the corrective measures taken do not help, contact authorized

technical service or your local Thermo Fisher Scientific
representative.

Emergency Situations
Handling emergency situations

Chapter 13
Maintenance
Regular and Contact local authorized technical service or your local Thermo Fisher
Scientific representative for assistance, if necessary.
preventative
maintenance
Maintenance This chapter contains an outline of the points mentioned in the
checklist checklist below (Table 1313).
Table 1313. Maintenance checklist
Item
Monthly
Weekly
Yearly
Daily
Keep the instrument free of dust. See General on page 94. 3
Avoid disturbing any of the optical system components, including 3
optical covers. See General on page 94.
Clean and check the condition of the filters and the filter wheel position 2x
slot.
Wipe away spilled saline solutions, solvents, acids or alkaline solutions 3
from outer surfaces immediately to prevent damage, and wipe with
deionized distilled water. See Immediate on page 94.
If any surfaces have been contaminated with biohazardous material, 3
disinfect with a mild sterilizing solution. See General on page 94.
Clean the case of the instrument periodically. See Cleaning of the 3
instrument on page 95.
Clean the plate carrier when necessary. See Cleaning of the 3
instrument" on page 95.
Change the lamp when blown. See Changing the lamp on page 101. 3
Ensure proper shutdown. See Chapter 10: Shutdown. 3 3
Decontaminate the instrument when relocating the instrument or 3
sending it for service. See Decontamination procedure on page 96.
Perform verification with the Multiskan Verification Plate, Cat. no. 2x
24072800.
Service the instrument regularly. See Cleaning of the instrument on 3
page 95 and Maintaining a system log on page 105.
3= depending on the laboratory conditions and the use and configuration of the instrument

Maintenance
Regular and preventative maintenance
General Routine and service procedures must be performed by the user to

prevent unnecessary wear or hazards and are described below at the
frequency with which they should be applied.
Always ensure that the electrical supply in the laboratory conforms to
that specified on the type label of the instrument.
To guarantee the continuous reliability and accuracy of the Multiskan
FC, avoid disturbing any of the optical system components. A
misalignment of the light path affects measurements.
Keep the filters clean to ensure proper function and accurate results.
Prevent any liquid from entering the instrument.
Keep the instrument free of dust and other foreign matter.
Avoid touching the lens surfaces, filters or detectors with your bare
hands.
Perform the operational check regularly (see Performing the
operational check on page 18).
In the event of any damage, contact your local Thermo Fisher Scientific
representative for service.
Abrasive cleaning agents are not recommended, because they are likely
to damage the paint finish.
It is recommended that you clean the case of the instrument
periodically to maintain its good appearance (see Cleaning of the
instrument on page 95).
Clean the keypad surface with a mild laboratory detergent.
Plastic covers and surfaces can be cleaned with a mild laboratory
detergent or alcohol.
Warning If any surfaces have been contaminated with biohazardous

material, a mild sterilizing solution should be used.
Caution Do not autoclave any part of this instrument.
Immediate Although the Multiskan FC is constructed from high-quality materials,

you must immediately wipe away spilled saline solutions, solvents, acids
or alkaline solutions from outer surfaces to prevent damage and wipe
with deionized distilled water.

Maintenance
Cleaning a filter
Cleaning a filter To clean filters, follow these steps:
1. Remove particles, for example, dust, with clean pressurized air.
2. If necessary, clean the filters with a lintfree tissue soaked in 70%

ethanol.
Caution Do not use any other liquids to clean the optics. Avoid any
harsh treatment.
3. Wipe over the filter in a straight movement from inside to out. Do

not use any circular movements when cleaning the filter.
4. Repeat the procedure if the filter is not clean.
Cleaning of the Clean the instrument regularly as stated below.

instrument
Caution Painted surfaces can be cleaned with most laboratory
detergents. Dilute the cleaning agent as recommended by the
manufacturer. Do not expose painted surfaces to concentrated acids or
alcohols for prolonged periods of time as damage may occur.
1. Turn the power OFF and unplug the instrument.
2. Use disposable gloves.
3. Clean the instrument outside and the plate carrier with a soft cloth
dampened with water or mild detergent.
4. If you have spilt infectious agents on the instrument, decontaminate

the instrument. Refer to Decontamination procedure on page 96.
Caution Do not use any solutions containing hypochlorite, such as

bleach, on any of the stainless steel surfaces, as this may cause
permanent damage to the finish.

Maintenance
Disposal of materials
Disposal of Follow laboratory and country-specific procedures for biohazardous or

radioactive waste disposal. Refer to local regulations for the disposal of
materials infectious material.
Warning The samples can be potentially infectious. Dispose of all used

plates, disposable gloves, syringes, disposable tips, and so on as
biohazardous waste. Be cautious and always use gloves.
Decontamination If you have spilt infectious agents, carry out the decontamination
procedure.
procedure
Warning The decontamination procedure should be performed by
authorized trained personnel in a well-ventilated room wearing
disposable gloves, protective glasses and clothing.
Decontamination should be performed in accordance with normal

laboratory procedures. Any decontamination instructions provided with
the reagents used should be followed.
It is strongly recommended to perform the complete decontamination
procedure before relocating the instrument from one laboratory to
another.
Example of decontaminants:
Ethanol 70%
Virkon solution 1 3%
Glutaraldehyde solution 4%
Chloramine T
Microcide SQ 1:64
Caution If local or laboratory regulations prescribe regular

decontamination, it is not advisable to use formaldehyde, since even
small traces of formaldehyde negatively affect the enzyme being used in
EIA tests resulting in bad test results.
To decontaminate the instrument, follow these steps:
1. Prepare the decontaminant.
2. Empty the plate carrier. Ensure that you are wearing disposable
gloves.
3. Switch OFF the power and disconnect the power supply cable.

Maintenance
Adding individual filters to the filter wheel
4. Disinfect the outside of the instrument or to remove stains using a

cloth dampened with 70% ethanol.
5. Place the instrument in a large plastic bag. Ensure that the lamp and
filter wheel chamber cover and measurement chamber door are
open and the plate carrier is out.
6. Place a cloth soaked in the prepared decontaminant solution into

the bag. Ensure that the cloth does not come into contact with the
instrument.
7. Close the bag firmly and leave the instrument in the bag for at least
24 hours.
8. Remove the instrument from the bag.
9. After decontamination clean the instrument using a mild detergent.
10. After performing this decontamination procedure, enclose a signed

and dated Certificate of Decontamination both inside the transport
package and attached to the outside of the package.
Adding individual filters This section explains how to replace a filter in the filter wheel or add an
additional filter to the filter wheel.
to the filter wheel
Caution Only use filters approved by the instrument manufacturer.
Note The filter is a consumable and should be changed regularly.
1. Switch the power OFF.
2. Open the lamp and filter wheel chamber cover.
Caution When handling the filter wheel, do not touch any other
mechanical or electronic part.
3. Lift the filter wheel from the filter wheel slot (Figure 27 on page
17 and Figure 1319 on page 98). Do not touch the filter surfaces.

Maintenance
Figure 1319. Removing the filter wheel
4. Remove the filter spring by unscrewing the four (4) spring position
holding screws (Figure 1320 and Figure 1321 on page 99).
Caution Do not touch the filter glass surfaces with your bare hands.
Caution The magnet in the middle of the filter wheel attracts both the
screwdriver and the screws. Make sure the screwdriver or the screws do
not scratch the filters.
Figure 1320. Removing the spring position holding screws

Maintenance
Filter spring
Filter
Filter wheel
Next free position

for additional filter
Spring position holding screws
Figure 1321. Filter wheel parts
Figure 1322. Individual filter showing the arrow
Note Arrow pointing up
Figure 1323. Inserting a filter into the next free position in the filter wheel

Maintenance
5. Insert a new filter or an additional optional filter into the next free
position in the filter wheel (Figure 1323 on page 99). When
inserting the filter, the arrow must be pointing upwards as in Figure
1323 on page 99. The wavelength of the filter is marked on the
filter package as well as on the filter side, that is, the three digits
before the last digit of the number sequence: xxxxx NNNx, where
NNN is the wavelength. The filter positions are marked on the
other side of the filter wheel. The filter wheel has at present three
filters factory installed (Table 1314).
Note Do not change the positions of the factory or earlier installed

filters. Insert the optional filters into filter wheel positions after the
earlier installed filters.
Table 1314. Example of the filters in the filter wheel positions 1-8
Filter wheel position Wavelength (nm)
1 405 (example of factory installed filter)
4
5
6
7
8
6. Write down in Table 1314 the additional filters you have installed
into the filter wheel. It is recommended to add the filters in
ascending wavelength order.
7. Place the filter spring into its original position and fasten the four
screws symmetrically.
8. Slide the filter wheel back into the filter wheel slot with the filter
numbers (1-8) facing outwards (Figure 27 on page 17). The
magnet locking mechanism will automatically lock the wheel in the
correct position. Refer to Installing the filter wheel on page 16.
10. Switch the instrument ON.

Maintenance
Changing the lamp
11. Add the filters to the internal softwares general instrument

parameters. These parameters are set in the Settings menu. Refer to
Settings menu on page 58 and Table 1314.
Note The measurement results will be incorrect, if the filter parameters

differ from the actual filters in the filter wheel.
Now the filters are ready for use.
Changing the lamp To replace the lamp that has burnt out, follow these steps:
Caution Only use the lamp approved by the supplier: Cat. no.
1410101, Lamp, quartz-halogen lamp (Osram 64222, 6V/10W).
1. Turn the power OFF and unplug the instrument.
Warning If the instrument has been in use and you need to replace a
burned lamp, the lamp and its surroundings may be very hot. Wait for
the lamp to cool down before replacing it.
Caution When handling the lamp, do not touch any other mechanical
or electronic part.
3. Turn aside the two clamps, which keep the lamp in place
(Figure 1324 on page 102 and Figure 1325 on page 102).
4. Lift the lamp up with the terminal socket.
5. Loosen the two screws of the terminal socket and pull the lamp
from the terminal socket.

Maintenance
Changing the lamp
Figure 1324. Changing the lamp
Figure 1325. Lamp changed
Caution Do not touch the reflective surface of the new lamp or the
bulb itself.
6. Refit the terminal socket to the contacts of the new lamp approved
by the manufacturer (OSRAM 64222, 6V/10W).
7. Tighten the screws of the terminal socket and put the new lamp in
place.

Maintenance
Refitting the transport lock
Note Place the lamp and terminal socket into the correct position.
Refer to Figure 1325 on page 102.
8. Turn the two clamps in place to lock the lamp into position.
10. Plug in the instrument and switch the power ON.
Refitting the When you relocate the instrument or ship it for service, make sure you
refit the transport lock.
transport lock
To refit the transport lock, follow these steps:
1. The instrument has to be powered ON.
2. Press the PLATE in/out button so that the plate carrier goes in.
3. Switch the power OFF.
5. Push the transport lock bar through the hole in Figure 1326 into
the hole in the measurement head.
Figure 1326. Refitting the transport lock bar into the measurement head

Maintenance
Refitting the transport lock
6. Push the transport lock bar in as far as possible (Figure 1326).
7. Fasten the transport lock bar and tag clockwise using the Allen key
supplied (Figure 1327). Ensure that the transport lock bar is
completely tightened.
Figure 1327. Fastening the transport lock

The transport lock bar and tag are now refitted (Figure 1328).
Figure 1328. Transport lock bar and tag refitted

Maintenance
Maintaining a system log
Maintaining a A system log, which includes a short summary of the use, maintenance
procedures, error messages and other information about the use of the
system log system can be very useful in properly maintaining the system. Refer to
Appendix A: System Log. Copy the table as many times as necessary,
but leave the blank original inside the user manual.
How to pack for To pack the Multiskan FC for service, follow the instructions presented
below:
service
Inform about the use of hazardous materials.
Remove any microplate before decontamination. Also remove the
filter wheel and put it into its transportation box. Decontaminate
the instrument.
Refit the transportation lock. Refer to Refitting the transport lock
on page 103.
Close the lamp and filter wheel chamber cover and the
measurement chamber door.
Pack the instrument according to the packing instructions.
Use the original packaging for shipping.
Enclose a dated and signed Certificate of Decontamination (see
Appendix B) both inside and attached to the outside of the package,
in which you return your instrument (or other items).
Enclose the return authorization number (RGA) given by your local
Thermo Fisher Scientific representative.
Indicate the fault after you have been in touch with your local
Thermo Fisher Scientific representative or the Thermo Fisher
Scientific technical service department.
Disposal of the If the Multiskan FC is exposed to potentially infectious chemical

samples, toxic or corrosive chemicals or radioactive chemicals, waste
instrument management of the complete instrument must be carried out to ensure
that there is no risk of contamination.
Warning Decontaminate the instrument before disposal. Refer to

Decontamination procedure on page 96.
Follow laboratory and country-specific procedures for biohazardous or

radioactive waste disposal.

Maintenance
Disposal of the instrument
Warning The used lithium (Li) battery is regulated waste and must be
disposed of according to strict EPA (Environmental Protection Agency)
requirements. The Li battery has to be changed by an authorized service
technician only. Instructions for changing the Li battery are described
in the service manual.
Dispose of the instrument according to the legislation stipulated by the

local authorities concerning take-back of electronic equipment and
waste. The proposals for the procedures vary by country.
Pollution degree 2 (see Safety specifications on page
109)
Method of disposal Electronic waste
Contaminated waste
(Infectious waste)
WEEE symbol Thermo Fisher Scientific has contracted with one or

more recycling/disposal companies in each EU Member State
(European Country), and this product should be disposed of or recycled
through them. Further information on Thermo Fisher Scientifics
compliance with these Directives, the recyclers in your country, and
information on Thermo Scientific products which may assist the
detection of substances subject to the RoHS Directive are available at
www.thermo.com/WEEERoHS.
Regarding the original packaging and packing materials, use the

recycling operators known to you.
For more information, contact your local Thermo Fisher Scientific
representative.

Chapter 14
Technical Specifications
General Thermo Fisher Scientific reserves the right to change any specifications
without prior notice as part of our continuous product development
specifications program.
Table 1415. General specifications
General specifications
Overall dimensions ca. 290 mm (W) x 400 mm (D) x 210 mm (H)
[11.4 (W) x 15.7 (D) x 8.3 (H)]
Weight 8.5 kg [18.7 lbs.]
Operating conditions +10C to +40C; maximum relative humidity 80% for temperatures up to 31C
decreasing linearly to 50% relative humidity at 40C
Indoor use only
Transportation conditions -40C to +70C, packed in transport packaging
Storage conditions -25C to +50C, packed in transport packaging
Mains power supply 100 240 Vac, 50/60 Hz, nominal
Power consumption 100 VA max., standby 8 VA
Heat dissipation 341 BTU max.
Display High contrast color display with 480 x 272 dots
Keypad Four arrow keys; OK button; three function keys F1-F3; FILE and HELP keys;
0-9 number keys; a-z letters with the number keys; C key; START, STOP and
PLATE in/out buttons
User interface The instrument can be under PC control and run on SkanIt Software for
Multiskan FC, which controls all the instrument functions and provides data
reduction as well as reporting functions.
Computer interface USB 1.1 (2.0 compatible)
Plate types 96 and 384-well plates
Shaker Linear shaking, 3 speeds: Slow (5 Hz, 15 mm), Medium (11 Hz, 3 mm) and
Fast (20 Hz, 1 mm)

Performance specifications
Performance This section provides the performance specifications for the relevant
measurement technique and other instrument capabilities.
specifications
Table 1416. Photometry
Performance specifications / Photometry
Optical system Quartz-halogen lamp (Osram 64222, 6V/10W), interference filter (in the
filter wheel), fiber, fiber end optics, photodetector, signal processing
Wavelength range 340 850 nm
Filters 8-position filter wheel
The filters are optional. The standard filters are: 405 nm; 450 nm, and
620 nm. Additional filters can be ordered separately.
Half-bandwidth of filters 3 9 nm
Wavelength accuracy 2 nm
Detector One silicon photodetector
Linearity 0 4 Abs, 2%, normal mode
(96-well plate) 0 3 Abs, 2%, fast mode
(405 nm)
Linearity 0 3 Abs, 2% with normal mode
(384-well plate) 0 2.5 Abs, 2% with fast mode
(405 nm)
Measurement range 0 6 Abs
Absorbance resolution 0.001 Abs
Accuracy 1% (0.3 3 Abs)
(405 nm, normal mode) 2% (3 4 Abs)
Precision CV 0.2% (0.3 3 Abs)
(405 nm, normal mode) CV 1.0% (3 4 Abs)
Startup time Approx. 30 s
Measurement time 6 s (96-well plate), fast mode
12 s (96-well plate), normal mode
15 s (96-well plate), fast mode, dual wavelength
11 s (384-well plate), fast mode
33 s (384-well plate), normal mode
25 s (384-well plate), fast mode, dual wavelength
Long-term stability Instrument is stable due to autoblanking procedure.

Safety specifications
Table 1417. Incubator

Performance specifications / Incubator
Temperature range Ambient C + 4C to 50C
Liquid warm-up time Liquid warm-up time < 40 min from 25C to 37C, 96-well plate,
200 l water/well
Uniformity 1C across the plate (at 37C)
Safety This section describes the safety specifications for the Multiskan FC
instrument.
specifications
In conformity with Multiskan FC bears the following markings:
the requirements Type 357
100 240 Vac, 50/60 Hz, 100 VA max.
CE mark
CSA monogram
Multiskan FC conforms to the following requirements:

2006/95/EC (Low Voltage Directive)
2004/108/EC (Electromagnetic Compatibility Directive, EMC)
FCC Part 15, Subpart B/Class B (July 2004)
2002/96/EC (Waste of Electrical and Electronic Equipment)
Safety performance:
EN 61010-1:2001 (Ed. 2),
including US and CA National differences
EN 61010-2-010:2003 (Ed. 2)
EN 61010-2-101:2002 Particular Requirements for In Vitro Diagnostic (IVD) Medical
Equipment
The safety specifications are also met under the following environmental
conditions in addition to or in excess of those stated in the operating conditions:
Altitude Up to 2000 m
Temperature +5C to +40C
Humidity Maximum relative humidity 80% for temperatures up to
31C decreasing linearly to 50% relative humidity at 40C
Mains supply fluctuations 10% from nominal
Installation category II according to IEC 60664-1 (see Note 1)
(overvoltage category)
Pollution degree 2 according to IEC 60664-1 (see Note 2)

Safety specifications
Note 1) The installation category (overvoltage category) defines the level

of transient overvoltage which the instrument is designed to withstand
safely. It depends on the nature of the electricity supply and its
overvoltage protection means. For example, in CAT II which is the
category used for instruments in installations supplied from a supply
comparable to public mains, such as hospital and research laboratories
and most industrial laboratories, the expected transient overvoltage is
2500 V for a 230 V supply and 1500 V for a 120 V supply.
2) The pollution degree describes the amount of conductive pollution

present in the operating environment. Pollution degree 2 assumes that
normally only nonconductive pollution, such as dust, occurs with the
exception of occasional conductivity caused by condensation.
EMC performance:
EN 61000-6-3:2001 Generic standards
Emission standard for residential, commercial and light-
industrial environments
EN 61000-6-1:2007 Generic standards
Immunity standard for residential, commercial and light-
industrial environments
EN 61326-1:2006 Product family standard
Electrical equipment for measurement, control and
laboratory use
EN 61326-2-6:2006 Product family standard
Electrical equipment for measurement, control and
laboratory use; In vitro diagnostic (IVD) medical equipment
Test standards Performance limits

EN 55022:1998 + A1:2000 Class B, 150 kHz 1 GHz
EN 61000-3-2: 2000 + A2:2005 Class A
EN 61000-3-3:1995 + A1:2001
ANSI C63.4:2003 Class B, 450 kHz 1 GHz
EN 61000-4-2:1995 + A1:1998 + A2:2001 4 kV CD, 8 kV AD, Criteria B
EN 61000-4-3:2002 + A1:2002 3 V/m, 80 MHz 2,7 GHz, Criteria A
EN 61000-4-4:2004 1 kV, Criteria B
EN 61000-4-5:1995 + A1:2001 2 kV line to ground, 1 kV line to line, Criteria B
EN 61000-4-6:1996 + A1:2001 3 Vrms, 150 kHz 80 MHz, Criteria A
EN 61000-4-8:1993 + A1:2001 3 A/m, Criteria A
EN 61000-4-11:1994 + A1:2001 30%/500ms, Criteria B
60%/100 ms, Criteria B
100%/10 ms, Criteria C

Chapter 15
Troubleshooting Guide
Note Do not use the instrument if it appears that it does not function
properly.
Note The instrument does not verify the logic flow of the received
commands.
Error and When an error is detected, the current operation is terminated. After an
error, it is best to abort the current run and restart from the beginning
warning codes after the problem is fixed. The error (Table 1518) and warning codes
(Table 1519) that may appear in SkanIt Software for Multiskan FC
are presented below.
Table 1518. Error codes reported
Code Explanation Suggested action
0 The command was executed successfully.
2 The instrument did not recognize the command it received. Contact the PC software vendor.
3 The arguments of the received command are not valid. Contact the PC software vendor.
4 Plate positioning error. Check that there is nothing preventing free plate
movement.
Contact service.
5 Measure head positioning error. Check that there is nothing preventing free measure
head movement.
Contact service.
6 Filter wheel positioning error. Check that the filter wheel is in place.
Contact service.
7 AD converter offset voltage is too high. Contact service.
8 AD converter noise level is too high. Contact service.
9 Lamp failure. Replace the lamp.
It is also possible to get this error if either one of the
measure head or plate motors has lost steps so that
the position is wrong.
10 Non-volatile parameters lost. Contact service.
11 Attempt to set the instrument serial number when it already Do not try to set the instrument serial number.
has been set.
12 Not enough memory for a new user-defined parameter. Using the PUT command, delete some unused user
Continued

Error and warning codes
Cont.
This error may be reported in response to a PUT command. parameters to make room for new parameters. The
internal memory is full. Take a backup by exporting
the protocols/runs. Refer to Chapter 9: Printing,
Exporting and Importing. Release space from the
internal memory by deleting protocols/runs from the
internal memory.
13 Such an error during startup, that the execution of the MEA When you connect to the instrument with the VER
and SCA commands is precluded. command, the instrument should not report any error
in the response. If it does, try to eliminate the error.
If you are unable to eliminate the error, contact
service.
14 The distance between plate wells is too short for scan Check the parameters of the PLA command used.
measurement.
15 The sampling time for a single result is too long for scan Use the MEA command instead of the SCA
measurement. The plate cannot be moved as slowly as the command. Use a shorter sampling time in the MPA
sampling time requires. command.
16 Failed to adjust a suitable lamp intensity for a filter. Check that there actually is a filter in all used filter
positions. If the error persists, contact service.
17 Too high dark signal level. The dark level is checked once This error may also be caused by a measure head or
for each measured plate row/column. plate position error see errors 4 and 5. Contact
service.
18 Measure signal saturation. Contact service.
19 No filters defined. Define at least one filter you are using.
20 The USB memory stick/printer interface is not working. Contact service.
21 The USB memory stick/printer interface firmware is Contact service.
corrupted.
22 XY table position calibration failed. This may be reported Contact service.
after startup.
23 Command parser optimization failure. You should never see this error. This is not fatal
the instrument still works but command parsing is a
bit slower.
Contact service.
24 Temperature reference is out of limits. Incubation is not Contact service.
available if this error is reported.
25 Parameters memory not found. Contact service.
26 Parameters memory erase failure. Contact service.
27 Parameters memory write failure. Contact service.
28 Temperature is not changing. Use a at least a 4C higher incubation temperature
than the environmental temperature. This applies to
both the protocol and startup temperature.
Contact service.
29 One or more heaters not ok. Contact service.
50 File open error. File not found. Contact service.
51 Filter 1 not selected in measure parameters. Select filter 1.
Continued

Warnings and cautions
Cont.
52 Filter information in the protocol does not match the filter Edit the protocol or add the correct filter to the filter
wheel. wheel.
53 The file already exists. Save with another file name.
54 The file does not exist. Contact service.
55 The media is full. You have to delete some protocols or runs. If
Defragmenting file system messages start to
appear on the display, you should already at this
stage make more space by deleting some protocols
or runs.
56 End of file. Contact service.
57 Other file error (none of the previous). Contact service.
58 Firmware update aborted by user.
59 Printer not attached. Connect the external printer.
60 The printer is out of paper. Add paper to the printer.
61 Printing error. Retry and if the error persists, contact service.
Table 1519. Warning codes reported

100 Unable to comply with the defined kinetic interval. The minimum timing depends on the combination of
measure parameters, plate movement parameters,
number of wavelengths and number of measured
wells.
101 The timer referenced in the WAI timer command is not Make sure you started the timer with a long enough
(anymore) running. Your timing requirement is not met. wait time.
102 Temperature is not changing. Please note that the cooling of the incubation
chamber takes time. If you get the warning of
Temperature is not changing, it means that the
incubator chamber is cooling slowly. It is possible to
start the run despite of the warning message in case
the incubation temperature is not critical for the
application.
Warnings and This instrument is designed to provide full user protection. When
correctly installed, operated and maintained, it will present no hazard to
cautions the user.
The following recommendations are given for added user safety.
Electrical Ensure that the power supply cable supplied with the unit is always
used. If a correct type of mains cable is not provided, use only cables
certified by the local authorities.

Warnings and cautions
The power plug should only be inserted into a socket outlet provided
with a protective ground contact. Never use an extension cable without
a protective ground wire.
Warning Only authorized technical service personnel are allowed to

open the instrument. Disconnect the instrument from all voltage
sources by disconnecting the power supply cable before opening it.
The same precautions applicable when using any electrical equipment

should naturally be observed with this instrument.
Warning Do not touch switches or electrical outlets with wet hands.
Switch the instrument OFF before disconnecting it from the mains

supply.
Defects and This section describes about defects and abnormal stresses.
abnormal stresses
Warning If the instrument is not functioning properly, it may create
electromagnetic perturbation, which could impair the operation of
other devices or equipment in the usual environment.
Whenever it is likely that the protection has been impaired, the

instrument should be made inoperative and be secured against any
unintended operation. Contact authorized technical service
immediately.
The protection is likely to be impaired if, for example, the instrument:
Shows any visible damage
Fails to perform the intended functions
Has been subjected to prolonged storage under unfavorable
conditions
Has been subjected to severe transport stresses.

Chapter 16
Ordering Information
Contact your local Thermo Fisher Scientific representative for ordering
and service information.
List of filters Table 1620. Codes for filters
Code Item
1423405 Optical filter 340 nm

List of spare parts and accessories
List of spare Table 1621. Codes for spare parts and accessories
parts and Code Item Quantity
accessories N07710 Multiskan FC User Manual 1

N07713 SkanIt Software for Multiskan FC User Manual 1
5187100 SkanIt Software for Multiskan FC, Research Edition 1
1410101 Halogen lamp 6V/10W 1
N04001 USB A-B device cable * 1
* longer USB cables available from PC stores
List of Thermo Table 1622. Codes for plates

Scientific plates Code Item
9503060 MultiFrame
Immulon Plates, 96 Well
3355 Flat, 1 B, Medium Binding
3455 Flat, 2 HB, High Binding
3855 Flat, 4 HBX, High Binding Extra
Microtiter 96 Well Plates
9502227 Flat, Universal Binding
95029330 Flat, Enhanced Binding
95029780 Flat, Universal Binding, Sterile + Lid
Microtiter 384 Well Plates
95040000 Round, 384 Plate
8555 Immulon 1 B Plate, square well
8755 Immulon 4 HBX, square well
Immulon Strip Assemblies (in frames)
6310 Flat, 1 B, Medium Binding, 1 x 12
6309 Flat, 2 HB, High Binding, 1 x 12
6405 Flat, 4 HBX, High Binding Extra, 1 x 12
Immulon Strips
Microtiter Breakable Strip Assemblies (in frames)
95029390 Flat, Universal Binding, 1 x 8
Continued

Verification tools
Cont.
Code Item
95029180 Flat, Enhanced Binding, 1 x 8
Microtiter Solid Strip Assemblies (in frames)
95029350 Flat, Universal Binding, 1 x 8
95029100 Flat, Enhanced Binding, 1 x 8
Verification Table 1623. Codes for verification tools

tools Code Item Quantity
24072800 Multiskan Verification Plate 1

Verification tools

Appendix A
System Log
Instrument name/number:
User Date Comments
PHOTOCOPIABLE

System Log

Appendix B
Certificate of Decontamination
Name:
Address:
Tel./Fax:
Name: Serial no.:
A) I confirm that the returned items have not been contaminated by body fluids, toxic,
carcinogenic or radioactive materials or any other hazardous materials.
B) I confirm that the returned items have been decontaminated and can be handled without
exposing the personnel to health hazards.
Materials used in the unit: Chemicals + Biological Radioactive *)
Specific information about contaminants:
Decontamination procedure1:
Date and place:

Signature:
Name (block capitals):
*) The signature of a Radiation Safety Officer is also required when the unit has been used with
radioactive materials.
This unit is certified by the undersigned to be free of radioactive contamination.
Date and place:

Signature:
Name (block capitals):
PHOTOCOPIABLE
1
Please include decontaminating solution used.

Certificate of Decontamination

Glossary
absorbance (optical density) A logarithmic self-tests Initialization tests and adjustments that
function of the transmission of a wavelength of the instrument performs before operation as
light through a liquid. log (l/l0) dimension [Abs] well as autocalibration.
decontamination Removal or neutralization of single measurement Synonym to endpoint
radiologic, bacteriological, chemical or other measurement/assay/method. The measurement
contamination. is only done with a single reading.
disinfection The destruction of pathogenic transmittance The ratio of transmitted (I) and
bacteria, usually with an antiseptic chemical or incident light (l0), l/l0.
disinfectant. USB Universal serial bus.
EIA Enzyme immunoassay. An immunoassay
using a color-changing enzyme-substrate system
for indicating results. A diagnostic test method
to measure or detect a substance using antibody-
antigen reactions.
ELISA Abbreviation for enzyme-linked
immunosorbent assay.
error message Indication that an error has been
detected.
fast mode The detector moves over the well
without stopping.
filter An optically wavelength selective
component.
initialization tests So-called self-tests, which are
carried out before operation to ascertain that the
necessary instrument adjustments have been
carried out.
kinetic measurement Measurement over a time
period at certain intervals.
normal mode The detector stops over the
measured well.
optical density (absorbance) log (1/transmittance)
= log (l/l0) dimension [O.D.]
photometer A device measuring absorbance or
optical density.
photometry The measurement of the properties of
light, particularly (luminous) intensity.

Glossary:

Index
A E
absorbance, 11, 12, 33, 40, 41, 50, 55, 73, 75, 108, 123 enabling QC, 54, 75
accessories, 13, 116 endpoint measurement, 26, 123
accuracy, 2, 94, 108 environmental requirements, 14
adding a QC rule, 54, 75 error, 19, 105, 111, 112, 113, 123
adding individual filters to the filter wheel, 97 codes, 111
application, 2, 5, 12 messages, 19, 105, 123
autoblanking, 23, 108 exporting a protocol, 82
autocalibration, 23, 123 exporting results or protocols, 55, 56, 57, 80, 81, 82, 83
average rate, 33, 38, 39, 40
F
B factor, 47, 48, 49, 50
Baseline readings, 38, 45 filter wheel, 14, 16, 17, 19, 23, 33, 88, 89, 90, 93, 97, 98,
99, 100, 101, 103, 104, 105, 108, 111, 112
C filters, 16, 19, 23, 29, 33, 58, 59, 87, 88, 89, 93, 94, 95, 97,
98, 100, 101, 108, 112, 115
calculated results, 29, 54, 56, 79, 81, 82
four parameter logistic, 48, 49
calculation parameters, 29, 31, 35, 36, 38, 47, 48, 51, 54, 55,
68, 71, 72, 73, 75
calibration, 29, 49, 50, 54, 56, 57, 79, 112 G
curve, 29, 56, 57 glossary, 123
Change, 38, 45, 93
Change type, 38, 45 H
changing the lamp, 93, 101, 102 half-bandwidth, 108
changing the language, 87 header, 59, 90
cleaning the filters, 95 how to decontaminate the instrument, 85, 93, 95, 96, 97,
connecting to a computer, 18 105, 121
connecting to a printer, 18 how to install the Multiskan FC, 13, 14, 18, 19, 94, 109
cubic spline, 48, 49 how to maintain the instrument, 62, 64, 93
curve fit, 35, 39, 41, 47, 48, 57, 72 how to pack for service, 13, 105
cutoff, 51, 52 how to shut down, 85, 93
how to switch on, 18
D how to unpack, 13
decontamination, 85, 93, 95, 96, 97, 105, 121, 123
Certificate of, 97, 105, 121 I
procedure, 85, 93, 95, 96, 97, 105, 121 Ignore from beginning, 38, 41, 43, 44, 45, 46
detector, 23, 108, 123 Ignore from end, 38, 41, 43, 44, 45, 46
disposal of instrument, 105 importing a protocol, 83
disposal of materials, 96 importing results or protocols, 82, 83

incubation, 11, 24, 29, 30, 34, 35, 65, 66, 67, 112 chamber, 19, 85, 97, 105
parameters, 29, 30, 34, 67 chamber door, 19, 85, 97, 105
incubator, 11, 24, 29, 34, 66, 87, 109, 115 mode, 33
installation, 3, 13, 14, 16, 18, 19, 33, 100, 109, 110 parameters, 33, 40
category, 109, 110 technique, 108
installing the filter wheel, 16, 100 time, 33, 108
instrument settings, 58, 90, 101 measuring, 2, 12, 123
intended use, 3, 12 memory stick, 18, 22, 61, 62, 82, 112
internal memory, 24 menu, 25, 26, 29, 35, 54, 58
interpretation, 29, 35, 50, 51, 52, 53, 65, 73, 74, 79 layout, 29
parameters, 65 Multiskan Verification Plate, 93, 117
introducing a filter to the internal software, 33, 89
N
K navigating, 25
keypad, 19, 25, 53, 54, 94, 107 normal mode, 33, 108, 123
keys, 25, 26, 29, 53, 54, 61, 62, 63, 66, 67, 69, 70, 73, 74,
75, 76, 80, 87, 89, 107 O
kinetic, 24, 26, 33, 34, 35, 37, 38, 39, 40, 41, 43, 51, 52, 54,
56, 71, 79, 113, 123 opening a new protocol, 31, 65
calculations, 35, 37, 38, 39, 40, 71 optical, 2, 17, 23, 93, 94, 108, 115, 123
measurements, 24, 26, 34, 37, 123 density, 123
rate, 38, 41, 43 system, 23, 93, 94, 108
kinetic measurements, 24, 26, 34, 37, 123 ordering information, 3, 115
Kinetic rate, 38, 41, 43
P
L packing, 13, 105, 106
lamp, 14, 17, 23, 93, 97, 100, 101, 102, 103, 104, 105, 108, instructions, 105
111, 112, 116 list, 13
lamp and filter wheel chamber, 14, 17, 97, 100, 101, 103, materials, 106
104, 105 photometric measurement, 3
cover, 14, 17, 97, 100, 101, 103, 104, 105 photometry, 108, 123
layout, 29, 35, 36, 47, 50, 54, 56 plate, 12, 107, 116, 117
light source, 14, 17, 23, 93, 97, 100, 101, 102, 103, 104, format parameters, 32
105, 108, 111, 112, 116 in/out switch, 27, 103
limit, 35, 44, 51, 52, 73 layout, 29, 35, 36, 37, 47, 50, 56, 57, 65, 68, 71
linear regression, 40, 48, 49, 72 type, 107
linear shaking, 107 point to point, 48, 50
precalculations, 39, 40, 65, 71, 72
M precision, 108
main parameters, 29, 30, 62, 64, 65 preprocessing parameters, 37, 38, 52
maintaining a system log, 93, 105 printer, 18, 29, 58, 59, 61, 62, 81, 82, 87, 90, 112, 113
maintenance, 3, 62, 64, 93, 94, 105 printing, 18, 29, 58, 59, 61, 62, 81, 90, 113
checklist, 93 printing or exporting data, 81
maximum of well, 38, 40, 46 program overview, 29
maximum rate, 38, 40, 41, 42, 43, 44 programming, 33, 34, 37, 53, 65, 66, 68, 71, 72, 73
measurement, 29, 30, 31, 33, 34, 40, 41, 43, 45, 46, 56, 65 a plate layout, 37, 68

a wavelength, 33, 65 from the list, 62
an interpretation, 53, 73 with the quick keys (F1-F3), 61
calculations, 71, 72 startup, 18, 23, 29, 58, 59, 87, 90, 101, 108, 112
incubation, 66 stored curve, 47, 50, 56
precalculations, 71 switching on, 18
shaking, 34, 66 symbols, 4
protocol, 3, 18, 20, 26, 27, 29, 30, 31, 33, 35, 36, 39, 48, system, 2, 5, 12, 23, 29, 43, 58, 59, 87, 88, 93, 94, 105, 108,
50, 51, 53, 54, 55, 56, 58, 61, 62, 63, 64, 65, 68, 73, 75, 113, 115, 119, 123
76, 77, 79, 82, 83, 84, 90, 112 log, 105
settings, 87
Q System, 29, 59, 87, 105, 115, 119
quality control, 12, 29, 35, 53, 54, 57, 75, 79 system log, 93, 105
parameters, 53, 75
quantitative assay, 51 T
time to change, 38, 40, 44
R time to maximum, 38, 40, 43, 46
raw data, 29, 40, 54, 55, 79 time to maximum rate, 38, 40, 43
Reaction, 38, 42, 44, 45 transmittance, 123
Readings from, 38, 45 transport, 13, 14, 15, 16, 97, 103, 104, 105, 107, 114
ready-made protocols, 26, 61, 62 damage, 13
refitting the transport lock, 103, 105 package, 13, 97
releasing the transport lock, 14 troubleshooting, 111
remote control, 19, 27 type label, 4, 94
result handling, 55, 71
results in list format, 29, 57 U
uniformity, 109
S USB, 18, 19, 22, 61, 62, 81, 82, 83, 107, 112, 116, 123
saving a new (active) protocol, 65, 76 memory stick, 18, 22, 61, 62, 81, 82, 83, 112
service, 13, 23, 91, 93, 94, 103, 105, 106, 111, 112, 113, memory stick port, 22, 81, 82, 83
114, 115 user interface, 3, 26, 107
pack for, 13, 105
setting the date, 87 V
Settings parameters, 59
verification tools, 117
shaker, 24, 34, 107
viewing results, 79
shaking, 11, 24, 29, 30, 34, 65, 66, 107
speed, 24, 34, 66
W
shutdown, 85, 93
single measurement, 26, 123 warm-up time, 109
source data, 40, 51, 52, 73 warning codes, 111, 113
spare parts, 116 warranty, 13
specifications, 3, 106, 107, 108, 109 wavelength, 11, 23, 33, 38, 39, 40, 59, 65, 71, 88, 89, 100,
108, 123
general, 107
accuracy, 108
performance, 108, 109
range, 11, 108
safety, 106, 109
Window, 38, 41, 43, 44, 45
speed, 24, 26, 34, 66
starting a ready-made protocol, 61, 62

Notes

Notes

Notes

Thermo Fisher Scientific Oy
Microplate Instrumentation
Ratastie 2, P.O. Box 100
FI-01621 Vantaa
Finland
www.thermo.com
N07710

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Rev. 1.4, Cat. no. N07710

No liability for consequential damages

In an effort to produce useful and appropriate documentation, we

Thermo Fisher Scientific Thermo Scientific Multiskan FC User Manual 3

Consult instructions for use

WEEE symbol This product is required to comply with the European

CAUTION: WARNING: DISCONNECT SUPPLY BEFORE

4 Thermo Scientific Multiskan FC User Manual Thermo Fisher Scientific

Warning Risk of electric shock.

Warning Biohazard risk.

Warning Hot surface, risk of burns.

Warning Risk of injury to the user(s).

Caution Risk of damage to the instrument, other equipment or loss of

Note Marks a hint, important information that is useful in the

Thermo Fisher Scientific Thermo Scientific Multiskan FC User Manual 5

6 Thermo Scientific Multiskan FC User Manual Thermo Fisher Scientific

Chapter 1 Introduction to the Multiskan FC ............................................................ 11

Chapter 2 Installation .................................................................................................... 13

Chapter 3 Multiskan FC Main Parts............................................................................ 21

Chapter 4 Operating the Internal Software............................................................... 25

Chapter 5 Menus and Parameters............................................................................... 29

Thermo Fisher Scientific Thermo Scientific Multiskan FC User Manual 7

Plate format parameters................................................................ 32

Chapter 6 Starting Ready-made Protocols ................................................................61

Chapter 7 Protocol Creation Examples ......................................................................65

Chapter 8 Viewing Results............................................................................................79

Chapter 9 Printing, Exporting and Importing.............................................................81

8 Thermo Scientific Multiskan FC User Manual Thermo Fisher Scientific

Printing or exporting data ............................................................... 81

Chapter 11 Modifying Settings ...................................................................................... 87

Chapter 12 Emergency Situations ................................................................................. 91

Chapter 14 Technical Specifications ......................................................................... 107

Chapter 15 Troubleshooting Guide ............................................................................. 111

Thermo Fisher Scientific Thermo Scientific Multiskan FC User Manual 9

Chapter 16 Ordering Information .................................................................................115

Appendix A System Log...................................................................................................119

Appendix B Certificate of Decontamination ...............................................................121

10 Thermo Scientific Multiskan FC User Manual Thermo Fisher Scientific

Figure 1-1. Multiskan FC microplate photometer

Thermo Fisher Scientific Thermo Scientific Multiskan FC User Manual 11

Intended use The Multiskan FC is a microplate photometer for measuring

Caution Operate the instrument only with software and hardware

12 Thermo Scientific Multiskan FC User Manual Thermo Fisher Scientific

Retain the original packaging for future transportation. The packaging

Thermo Fisher Scientific Thermo Scientific Multiskan FC User Manual 13

Caution Do not operate the instrument in an environment where

Releasing the The instrument comes with a transport lock.

To release the transport lock, follow these steps:

14 Thermo Scientific Multiskan FC User Manual Thermo Fisher Scientific

2. Unfasten the transport lock bar counterclockwise using the Allen

Figure 23. Unfastening the transport lock

3. Pull the transport lock bar out (Figure 24).

Figure 24. Pulling the transport lock out

Thermo Fisher Scientific Thermo Scientific Multiskan FC User Manual 15

Figure 25. Transport lock bar and tag removed

Figure 26. Multiskan FC filter wheel

Caution Do not touch the filters with your bare hands.

16 Thermo Scientific Multiskan FC User Manual Thermo Fisher Scientific

3. Close the lamp and filter wheel chamber cover.