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Cobalt RID 9JFE347B211 (5 Seqs)

The document describes the results of a multiple sequence alignment of 5 protein sequences using COBALT. The alignment shows the sequences side by side with their identifiers on the left and aligned amino acids in each column. Regions of high conservation between the sequences are indicated with brackets.

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John Smith
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57 views2 pages

Cobalt RID 9JFE347B211 (5 Seqs)

The document describes the results of a multiple sequence alignment of 5 protein sequences using COBALT. The alignment shows the sequences side by side with their identifiers on the left and aligned amino acids in each column. Regions of high conservation between the sequences are indicated with brackets.

Uploaded by

John Smith
Copyright
© © All Rights Reserved
We take content rights seriously. If you suspect this is your content, claim it here.
Available Formats
Download as PDF, TXT or read online on Scribd
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COBALT: - Cobalt RID ( seqs)

1 of 2

COBALT
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http://www.ncbi.nlm.nih.gov/tools/cobalt/cobalt.cgi?CMD=Get&cobalt...

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Descriptions

Constraint-based Multiple Alignment Tool

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- Cobalt RID 9JFE347B211 (5 seqs)

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Alignment parameters

Legend for links to other resources:


Accession

My NCBI

UniGene

GEO

Gene

Structure

Map Viewer
Description

Links

lcl|Query_10001

MWLLLYLIIHLFDLGWRKQAVPFLLELFVYKATQSCLTKVNGVYQSDTAGVKVPELDLELAS

lcl|Query_10003

gi|255575202|ref|XP_002528505.1| zinc finger protein, putative [Ricinus communis] >gi|223532065|gb|EEF33874.1| zinc finger pr

lcl|Query_10002
lcl|Query_10004
lcl|Query_10005

Alignments

gi|703150233|ref|XP_010109807.1| Zinc finger protein [Morus notabilis] >gi|587937966|gb|EXC24750.1| Zinc finger protein [Moru
gi|734335906|gb|KHN08024.1| Zinc finger protein ZPR1 [Glycine soja]

gi|590654436|ref|XP_007033696.1| ZPR1 zinc-finger domain protein [Theobroma cacao] >gi|508712725|gb|EOY04622.1| ZPR1 z

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View Format:

Mouse over the sequence identifer for sequence title

Conservation Setting:

Query_10001

MEGRD

NKEQIVD-VRSVVEAISTADNNDinVPLYEVESLCMRCRENGTTRFLLTLIPHFRKILLSAFECPHCGERNN

76

Query_10003

MENNS

NKEQIVD-VRSVVDAISNDDDNDndAPLYQVESLCMRCGENGITRLLLTLIPHFRKILLSAFECPHCGERNN

76

MES--

NKEKLVDdVGSVVEAISADDENA--APLYQVESLCMRCTQNGTTRFLLTSIPHFRKVLLSAFECPHCGERNN

Query_10002
Query_10004
Query_10005

1
1
1

MDNNN[7]DEEQIVD-VRSVVEAVSAADSSD--APLYQLESLCMRCGENGITRFLLTLIPHFRKILLSAFECPHCGERNN
-----

-----------------------------------MRCGENGTSRFLLTLIPNFRKILLSAFECPHCGERNN

81
37
73

Query_10001

77

EVQFAGEIQPRGCCYSLDIPSGDQKILNRQVVKSESATIKIPELDFEIPPEAQRGSLSTIEGILVRAADELQALQEERKK

156

Query_10003

77

EVQFAGEIQPRGCSYHLEIPSGNQKMLNRQVVKSESATIKIPELDFEIPPEAQRGSLSTVEGTLVRAADELQALQEERKK

156

Query_10002
Query_10004
Query_10005

82
38
74

EVQFAGEIQPKGCCYRLEVPSGDLKMLDRQVVKSESATIKIPELDFEIPPEAQRGSLSTVEGILVRAADELEALQEERKK
EVQFAGEIQPRGCCYSLEIPSCEQKMLNRQVVKAESATIKIPELDFEIPPEAQRGSLSTVEGILMRAADELQTLQEERKK
EVQFAGEIQPRGCNYRLEVQSGDEKMFTRQVVKSESATIKIPELDFEIPPEAQRGSLSTVEGILVRAIDGLQALQEERKK

161
117
153

Query_10001

157

VDPKTAEAIDQFLLKLRACAAGDSSFKFILDDPAGNSFIENLFAPSPDPSLNIKFYERTPEQQVALGYQVGQSQMGV--P

234

Query_10003

157

VDPKTAEAIDQFLLRLRSCATGDSSFTFILDDPAGNSFIENPFAPSSDPSLSIKFYERTPEQQVALGYLADPSQLGE--A

234

Query_10002
Query_10004
Query_10005

162
118
154

VDPQTAEAIDQFLVKLRACATGVSPFAFILDDPAGNSFIENLHAPSHDPSLSIKFYERTPEQQASLGYLVDSSQSADhrD
VAPETAEAIDQFLVKLRACAKGESAFTFILDDPAGNSFIENPFAPSSDPSLTIKFYERTPEQQASLGYLVGSTHIEG--T
VDPQTAEAIDQFLLKLRACATGESPFTFILDDPAGNSFIENPFAPSPDPSLSIKFYDRTPEQQALLGYLVDSSQIIE--P

241
195
231

Query_10001

235

GDGPSSEVTSNVSDQMRREPHGSVGAAAGHRAIAQSNSAEIAEAIFRYSAPEEVMTFPSTCGSCASSCETRMFVT

310

Query_10003

235

GESQPSESTGTVSGQIR-EPHGSVGAVAGHRTIAQSNSAEIAEALFRYSAPEEVMTFPSTCGACTSRCETRMFVT

309

TAGASMEEASNAANQIR-QAHGSVGAVAGQRAIAQSNSAEMAEALFRYSAPEEVMTFPSTCGACAIKCETRMFVT

Query_10002
Query_10004
Query_10005

242
196
232

GTSEP----NSSSDQIRREPHGSVGAAAGHRAIAQSNSAEIAEALFRYTAPEEVMTFPSTCGVCASRCETRMFVT[29]D
HDQAP-ERGEVTADQVRREPHGSIGATAGHRAIAQSNSSEIAEALFRYTAPEEVMTFPTSCGACAARCETRMFVT

342
270
306

Query_10001

311

IPYFQEVIVMASTCDSCGYRNSELKPGGRIPEKGKTITLCVKNANDLSRDVIKSDTAGVKVPELDLELASGTLGGIVTTV

390

Query_10003

310

IPYFQEVIVMASTCDSCGYRNSELKPGGRIPEKGKRITLHVENIKDLSRDVIKSDTAGVKVPELELELASGTLGGVVTTV

389

Query_10002
Query_10004
Query_10005

343
271
307

IPYFQEVIVMASTCDACGYRNSELKPGGRIPEKGKRITLTVKKTDDLSRDVIKSDTAGVKIPELDLELASGTLGGIVTTV
IPYFQEVIVMASTCDSCGYRNSELKPGGRIPEKGKKITLNVKNVNDLSRDVIKSDTASVKVPELDLELASGTLGGIVTTV
IPYFQEVIVMASTCDACGYRNSELKPGGRIPEKGKRIILRVKNINDLSRDVIKSDTASVRVPELDLELASGTLGGIVTTV

422
350
386

Query_10001

391

EGLVTKISESIERIHGFTFGDSLDGSKKSKWQDFKLRLNKLLNVEEPWTLILDDALANSFIAPATDNIKDDHQLSYEEYE

470

Query_10003

390

EGLITKISESLERVHGFTFGDSLDNYKRSKWQDFKAKLNKLLSLEEPWILILDDALANSFIAPATDDMKDDKQLLFEEYE

469

Query_10002
Query_10004
Query_10005

423
351
387

EGLITKISESLERVHGFTFGDSLDENKRIKWIDFKTRLSKLLSLEEPWTLILDDALANSFVAPVTDDIKDDHQLMFEEYE
EGLITKISESLERVHGFTFGDSLDEQRKNKWIDFKARLNKLLSLEEAWTLILDDALANSFVAPATDDLKEDNQLSFEEYE
EGLITKISESLERVHGFTFGDSLDDSKKNKWLDFKARLSKILSMAEPWTLILDDALANSFIAPATDDIKDDHQLMFEEYE

502
430
466

1/15/2016 10:47 AM

COBALT: - Cobalt RID ( seqs)

2 of 2

http://www.ncbi.nlm.nih.gov/tools/cobalt/cobalt.cgi?CMD=Get&cobalt...

Query_10001

471

RSWEQNEELGLNDIDTSSADAAYDSAQTTIKEKTRE

506

Query_10003

470

RSWEQNEELGLNDIDTSSADAAYNSTDATANQKIDE

505

Query_10002
Query_10004
Query_10005

503
431
467

RSWEQNEELGLNDIDTSSADAAYGSTDTTAKDKLEA
RSWEQNEELGLNDIDTSSADAAYESTNTTKT----RSWEQNEELGLNDMDTSSADAAYNSTGVMSMQKTEE

538
461
502

1/15/2016 10:47 AM

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