Chemguide Atom, Molecule
Chemguide Atom, Molecule
Chemguide Atom, Molecule
There are two equivalent ways in which you can define relative isotopic mass.
They mean exactly the same thing.
Either:
The relative isotopic mass of an isotope is the mass of the isotope on a scale
on which a carbon-12 atom has a mass of exactly 12 units.
Or:
The relative isotopic mass of an isotope is the mass of the isotope
Or:
A "weighted average" allows for the fact that there won't be equal amounts of the
various isotopes. This example should make that clear:
In chlorine, there are 3 atoms of chlorine-35 for every 1 of chlorine-37.
Suppose you had 4 typical atoms of chlorine.
The total mass of these would be (3 x 35) + (1 x 37) = 142
The average mass of these 4 atoms would be 142 / 4 = 35.5.
35.5 is the relative atomic mass of chlorine.
Notice the effect of the "weighted" average. A simple average of 35 and 37 is, of
course, 36. Our answer of 35.5 allows for the fact that there are more of the lighter
isotope of chlorine - and so the "weighted" average ought to be closer to that.
You can always find the relative atomic mass of an element from a Periodic Table.
But take care to choose the right number! Look at the key for the table, but, in any
case, the relative atomic mass will always be the larger number given in a periodic
element .
Or:
The relative molecular mass of a substance is the weighted average
Note: You may find that many sources miss out the bit about weighted averages,
but this should be included unless you are thinking about the mass of a particular
molecule with a particular combination of isotopes of the various atoms.
For example, taking the example of CHCl3 above:
There is no single molecule of CHCl3 which has a mass of 119.5. The problem is that
an average sample of these molecules will contain isotopes of both chlorine-35 and
chlorine-37. That means that individual molecules can have the following masses:
12 + 1 + (3 x 35) = 118
12 + 1 + (2 x 35) + 37 = 120
12 + 1 + 35 + (2 x 37) = 122
12 + 1 + (3 x 37) = 124
The weighted average takes account of the proportions of each of these molecules
in an average sample of the substance.
Don't get too worried about all this! It is far more likely that you will have to work
out a relative molecular mass by adding up the relative atomic masses than that
you will have to define it.
I strongly recommend that you use this term all the time, and only talk
about relative molecular mass if you are specifically asked about it in an
exam.
Or:
The relative formula mass of a substance is the weighted average of
The "formula unit" is just the formula as you have written it.
So, if 1 mole of a substance weighs 40 g and you have 10 g of it, you have 10/40
moles - in other words you have 0.25 moles.
Incidentally, the abbreviation for moles which you would normally use in
calculations is mol.
If you had to work out other things, you could obviously rearrange this equation to
give:
and
chlorine atoms, Cl
and anything else that you care to write the formula of.
1 mole of any of these contains exactly the same number of the formula units you
have written - the same as the number of atoms in 12 g of the carbon-12 isotope
i.e. each mole pf a substance have same number of atoms called
the Avogadro Constant, and is given the symbol L.
The Avogadro Constant is a huge number (approximately 6.02 x 10 23). It has units of
mol-1, which you would read as "per mole".
In other words, there are 6.02 x 1023 of whatever formula units you are talking about
per mole of that formula.
So, in 18 g of water, H2O, there are 6.02 x 1023 water molecules.
In 58.5 g of sodium chloride, NaCl, there are 6.02 x 10 23 NaCl formula units.
In 2 g of hydrogen, H2, there are 6.02 x 1023 hydrogen molecules.
And so on, and so on . . .
So what?
You can read that as "1 mole of iron, Fe, reacts with 1 mole of sulfur, S, to give 1
mole of iron(II) sulfide, FeS."
And by looking up the relative atomic masses, you find out that 56 g of iron will
react with 32 g of sulfur to give 88 g of iron(II) sulfide. That lets you know what
proportion to mix real iron and real sulfur together in, and how much product to
expect.
That's why moles are so important - they let you link equations to the actual
quantities of materials you are using.
Note: I'm not suggesting that you personally would have to do the calculation,
although the maths isn't actually very difficult - certainly no more than A'level
standard!
You can apply exactly the same principle to atomic sized particles.
Note: All mass spectrometers that you will come across if you are doing a course
for 16 - 18 year olds work with positive ions. Even if a few atoms in a sample of
chlorine, for example, captured an electron instead of losing one, the negative ions
formed wouldn't get all the way through the ordinary mass spectrometer. But it has
been pointed out to me that there is work being done on negative ion mass
spectrometers, although they use a different ionisation technique.
Stage 2: Acceleration
The ions are accelerated so that they all have the same kinetic energy.
Stage 3: Deflection
The ions are then deflected by a magnetic field according to their masses.
The lighter they are, the more they are deflected.
The amount of deflection also depends on the number of positive charges
on the ion - in other words, on how many electrons were knocked off in the
first stage. The more the ion is charged, the more it gets deflected.
i.e. amount of deflection the charge on the ion
Stage 4: Detection
The beam of ions passing through the machine is detected electrically.
The vaporised sample passes into the ionisation chamber. The electrically heated
metal coil gives off electrons which are attracted to the electron trap which is a
positively charged plate.
The particles in the sample (atoms or molecules) are therefore bombarded with a
stream of electrons, and some of the collisions are energetic enough to knock one
or more electrons out of the sample particles to make positive ions.
Most of the positive ions formed will carry a charge of +1 because it is much more
difficult to remove further electrons from an already positive ion.
These positive ions are persuaded out into the rest of the machine by the ion
repeller which is another metal plate carrying a slight positive charge.
Note: As you will see in a moment, the whole ionisation chamber is held at a
positive voltage of about 10,000 volts. Where we are talking about the two plates
having positive charges, these charges are in addition to that 10,000 volts.
Acceleration
The positive ions are repelled away from the very positive ionisation chamber and
pass through three slits, the final one of which is at 0 volts. The middle slit carries
some intermediate voltage. All the ions are accelerated into a finely focused beam.
Deflection
Different ions are deflected by the magnetic field by different amounts. The
amount of deflection depends on:
the mass of the ion. Lighter ions are deflected more than heavier
ones.
the charge on the ion. Ions with 2 (or more) positive charges are
It makes it simpler to talk about this if we assume that the charge on all the ions is
1+. Most of the ions passing through the mass spectrometer will have a charge of
1+, so that the mass/charge ratio will be the same as the mass of the ion.
Note: You must be aware of the possibility of 2+ (etc) ions, but the vast majority of
A'level questions will give you mass spectra which only involve 1+ ions. Unless
there is some hint in the question, you can reasonably assume that the ions you are
talking about will have a charge of 1+.
Assuming 1+ ions, stream A has the lightest ions, stream B the next lightest and
stream C the heaviest. Lighter ions are going to be more deflected than heavy ones.
Detection
Only ion stream B makes it right through the machine to the ion detector. The other
ions collide with the walls where they will pick up electrons and be neutralised.
Eventually, they get removed from the mass spectrometer by the vacuum pump.
When an ion hits the metal box, its charge is neutralised by an electron jumping
from the metal on to the ion (right hand diagram). That leaves a space amongst the
electrons in the metal, and the electrons in the wire shuffle along to fill it.
A flow of electrons in the wire is detected as an electric current which can be
amplified and recorded. The more ions arriving, the greater the current.
Detecting the other ions
How might the other ions be detected - those in streams A and C which have been
lost in the machine?
Remember that stream A was most deflected - it has the smallest value of m/z (the
lightest ions if the charge is 1+). To bring them on to the detector, you would need
to deflect them less - by using a smaller magnetic field (a smaller sideways force).
To bring those with a larger m/z value (the heavier ions if the charge is +1) on to the
detector you would have to deflect them more by using a larger magnetic field.
If you vary the magnetic field, you can bring each ion stream in turn on to the
detector to produce a current which is proportional to the number of ions arriving.
The mass of each ion being detected is related to the size of the magnetic field used
to bring it on to the detector. The machine can be calibrated to record current
(which is a measure of the number of ions) against m/z directly. The mass is
measured on the 12C scale.
Note: The
12
12
You may find diagrams in which the vertical axis is labelled as either "relative
abundance" or "relative intensity". Whichever is used, it means the same thing. The
vertical scale is related to the current received by the chart recorder - and so to the
number of ions arriving at the detector: the greater the current, the more abundant
the ion.
As you will see from the diagram, the commonest ion has a mass/charge ratio of 98.
Other ions have mass/charge ratios of 92, 94, 95, 96, 97 and 100.
That means that molybdenum consists of 7 different isotopes. Assuming that the
ions all have a charge of 1+, that means that the masses of the 7 isotopes on the
carbon-12 scale are 92, 94, 95, 96, 97, 98 and 100.
Note: If there were also 2+ ions present, you would know because every
one of the lines in the stick diagram would have another line at exactly
half its m/z value (because, for example, 98/2 = 49). Those lines would be
much less tall than the 1+ ion lines because the chances of forming 2+
ions are much less than forming 1+ ions.
Notes: Isotopes are atoms of the same element (and so with the same number of
protons), but with different masses due to having different numbers of neutrons.
We are assuming (and shall do all through this page) that all the ions recorded have
a charge of 1+. That means that the mass/charge ratio (m/z) gives you the mass of
the isotope directly.
The carbon-12 scale is a scale on which the mass of the12C isotope weighs exactly
12 units.
23
boron-11
100
10
B and 100
The total mass of these would be (23 x 10) + (100 x 11) = 1330
The average mass of these 123 atoms would be 1330 / 123 = 10.8 (to 3
significant figures).
10.8 is the relative atomic mass of boron.
Notice the effect of the "weighted" average. A simple average of 10 and 11 is, of
course, 10.5. Our answer of 10.8 allows for the fact that there are a lot more of the
heavier isotope of boron - and so the "weighted" average ought to be closer to that.
51.5
zirconium-91
11.2
zirconium-92
17.1
zirconium-94
17.4
zirconium-96
2.8
Note: You almost certainly wouldn't be able to measure these peaks to this degree
of accuracy, but your examiners may well give you the data in number form
anyway. We'll do the sum with the more accurate figures.
90
Zr, 11.2
Note: If you object to the idea of having 51.5 atoms or 11.2 atoms and so on, just
assume you've got 1000 atoms instead of 100. That way you will have 515 atoms,
112 atoms, etc. Most people don't get in a sweat over this, and just use the
numbers as they are!
If the Cl atom formed isn't then ionised in the ionisation chamber, it simply gets lost
in the machine - neither accelerated nor deflected.
The Cl+ ions will pass through the machine and will give lines at 35 and 37,
depending on the isotope and you would get exactly the pattern in the last diagram.
The problem is that you will also record lines for the unfragmented Cl2+ ions.
Think about the possible combinations of chlorine-35 and chlorine-37 atoms in a
Cl2+ ion.
Both atoms could be 35Cl, both atoms could be 37Cl, or you could have one of each
sort. That would give you total masses of the Cl 2+ ion of:
35 + 35 = 70
35 + 37 = 72
37 + 37 = 74
That means that you would get a set of lines in the m/z = 70 region looking like this:
Molecular formula
Empirical formula
By contrast, the empirical formula tells you the simplest ratio of the various
atoms present in a substance. For example, in ethane (above) the ratio of the
number of carbon to hydrogen atoms is 1:3. The empirical formula is CH 3. For
hydrogen peroxide, where the simplest ratio is 1:1, the empirical formula is HO.
what is the point of them?
The empirical formulae for most molecular substances are virtually never used,
unless they happen to be the same as the molecular formula - as in H 2O, for
example. Or in other words unless both empirical formula and molecular
formulae are the same , the empirical formula is not always same as a
molecular formulae.
The word "empirical" means "derived from observation or experiment" - so
an empirical formula is one which you can find by doing experiments. In other
words, you can do an experiment which will tell you that the empirical formula of a
particular hydrocarbon (not ethane) is CH 2, for example.
That in itself isn't very helpful. The hydrocarbon could be C 2H4, C3H6, C4H8, and so on
and so on - anything with a carbon to hydrogen ratio of 1:2. To find out the correct
molecular formula from the empirical formula, you would have to do further
experiments.
The empirical formula is just a stage on the way to finding out the
molecular formula of something.
The empirical formula and ionic compounds
For ionic compounds, like sodium chloride, the formula quoted is almost
always the empirical formula.
In an ionic compound, there are no fixed numbers of ions - it depends on how big
the crystal is. So the formula of sodium chloride is simply given as NaCl, showing
the 1:1 ratio. The formula of sodium oxide is Na2O, showing a 2:1 ratio.
Exceptions:
Note: You may come across a few ionic compounds such as sodium peroxide,
Na2O2, or mercury(I) chloride, Hg2Cl2, where the formula normally used isn't the
empirical formula. There are good reasons for this which would be unnecessarily
confusing to discuss now. Almost all ionic compounds use the empirical formula with
the few exceptions.
In a real crystal of sodium chloride or sodium oxide, there will be some huge
variable number of positive and negative ions. The formula we write just tells us
what the ratio is.
mass
0.46 g
0.32 g
0.46/23
0.32/32
= 0.02
= 0.01
ratio
That would tell you that the empirical formula was Na 2S.
Note: You may find that this time it isn't as easy to spot the ratio. If it isn't
immediately obvious, try dividing through by the smallest number. That will almost
invariably help.
Here's an example:
When 0.78 g of a hydrocarbon was burned in excess air, 2.64 g of carbon dioxide
and 0.54 g of water were formed. Find the empirical formula of the hydrocarbon.
The important things to notice is that every mole of CO 2 contains 1 mole of carbon
atoms. Every mole of H2O contains 2 moles of hydrogen atoms.
1 mole of CO2 weighs 44 g.
No of moles of CO2 = 2.64/44 = 0.06
Therefore, no of moles of carbon atoms, C = 0.06
1 mole of H2O weighs 18 g.
No of moles of H2O = 0.54/18 = 0.03
Each mole of H2O contains 2 moles of hydrogen atoms.
Therefore, no of moles of hydrogen atoms, H = 0.06
The ratio of the number of moles of C : H is 1 : 1.
The empirical formula is CH.
It has taken several lines to write this down, but it is a simple calculation.
Note: If you are writing down a complete calculation rather than filling in answers
in a structured exam paper, it is important to include lots of words. Notice how
many words there are in the simple calculation above compared with the amount of
numbers. You have to include enough words to make it absolutely clear what you
are doing
Use the carbon dioxide figure to work out the number of moles of carbon
atoms.
Use the water figure to work out the number of moles of hydrogen atoms.
Add up the carbon and hydrogen masses, and compare them with the original
mass of compound. If there is no difference, then you have a hydrocarbon,
and the problem disappears. Just look at the ratio of the numbers of moles of
carbon and hydrogen atoms.
If there is a difference, assume the difference is due to oxygen unless you are told
differently. Work out the mass of oxygen present.
From the mole figures for carbon, hydrogen and oxygen, work out the
empirical formula.
This all seems a bit long-winded, but it is simple enough if you follow the stages
through in an example.
The question:
0.23 g of a compound containing carbon, hydrogen and possibly oxygen was burned
in an excess of air. 0.44 g of carbon dioxide and 0.27 g of water were formed. Work
out the empirical formula of the compound.
No of moles of CO2 = 0.44/44 = 0.01
Therefore, no of moles of carbon atoms, C = 0.01
and mass of carbon = 0.01 x 12 g = 0.12 g
No of moles of H2O = 0.27/18 = 0.015
Each mole of water contains 2 moles of hydrogen atoms.
Therefore, no of moles of hydrogen atoms, H = 2 x 0.015 = 0.03
and mass of hydrogen = 0.03 x 1 g = 0.03 g
Total mass of carbon and hydrogen in compound = 0.12 + 0.03 g = 0.15 g
Since you started with 0.23 g of compound, there is missing mass which must be
oxygen.
Mass of oxygen = 0.23 - 0.15 g = 0.08 g
No of moles of oxygen atoms, O = 0.08/16 = 0.005
The ratio of number of moles is C 0.01 : H 0.03 : O 0.005
Dividing through by the smallest number to give a simple ratio gives:
C2:H6:O1
there are far more ions which don't have noble gas structures than
there are which do have noble gas structures.
the real reasons for the formation of a particular ion lie in the
energetics of the process.
Note: The central role given to noble gas structures is very much an oversimplification. We shall have to spend some time later on demolishing the concept!
The sodium has lost an electron, so it no longer has equal numbers of electrons and
protons. Because it has one more proton than electron, it has a charge of 1+. If
electrons are lost from an atom, positive ions are formed.
Positive ions are sometimes called cations.
The chlorine has gained an electron, so it now has one more electron than proton. It
therefore has a charge of 1-. If electrons are gained by an atom, negative ions are
formed.
A negative ion is sometimes called an anion.
The nature of the bond
The sodium ions and chloride ions are held together by the strong electrostatic
attractions between the positive and negative charges.
The formula of sodium chloride
You need one sodium atom to provide the extra electron for one chlorine atom, so
they combine together 1:1. The formula is therefore NaCl.
Again, noble gas structures are formed, and the magnesium oxide is held
together by very strong attractions between the ions. The ionic bonding is
stronger than in sodium chloride because this time you have 2+ ions
attracting 2- ions. The greater the charge, the greater the attraction.
The formula of magnesium oxide is MgO.
calcium chloride
This time you need two chlorines to use up the two outer electrons in the calcium.
The formula of calcium chloride is therefore CaCl 2.
potassium oxide
Again, noble gas structures are formed. It takes two potassiums to supply the
electrons the oxygen needs. The formula of potassium oxide is K 2O.
Electrons are transferred from one atom to another resulting in the formation
compound together.
So what's new? At heart - nothing. What needs modifying is the view that there is
something magic about noble gas structures. There are far more ions which don't
have noble gas structures than there are which do.
Some common ions which don't have noble gas structures
You may have come across some of the following ions in a basic course like GCSE.
They are all perfectly stable , but not one of them has a noble gas structure.
Fe3+
[Ar]3d5
Cu2+
[Ar]3d9
Zn2+
[Ar]3d10
Ag+
[Kr]4d10
Pb2+
[Xe]4f145d106s2
Noble gases (apart from helium) have an outer electronic structure ns 2np6.
Apart from some elements at the beginning of a transition series
(scandium forming Sc3+ with an argon structure, for example), all
transition elements and any metals following a transition series (like tin
and lead in Group 4, for example) will have structures like those above.
That means that the only elements to form positive ions with noble gas structures
(apart from odd ones like scandium) are those in groups 1 and 2 of the Periodic
Table and aluminium in group 3 (boron in group 3 doesn't form ions).
Negative ions are tidier! Those elements in Groups 5, 6 and 7 which form simple
negative ions all have noble gas structures.
If elements aren't aiming for noble gas structures when they form ions, what
decides how many electrons are transferred? The answer lies in the energetics of
the process by which the compound is made.
What determines what the charge is on an ion?
Elements combine to make the compound which is as stable as possible - the one in
which the greatest amount of energy is evolved in its making. The more charges a
positive ion has, the greater the attraction towards its accompanying negative ion.
The greater the attraction, the more energy is released when the ions come
together.
That means that elements forming positive ions will tend to give away as many
electrons as possible. But there's a down-side to this.
A similar sort of argument applies to the negative ion. For example, oxygen forms
an O2- ion rather than an O- ion or an O3- ion, because compounds containing the
O2- ion turn out to be the most energetically stable.