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    TPS

    Uploaded by

    Iseng Iseng
    This document provides summaries of various software packages for analyzing shape data using thin-plate spline methods. The software packages described include tpsSmallw32/64 for testing shape variation, tpsTree32/64 for fitting thin-plate splines to trees, tpsRegr32/64 for multivariate regression of shape onto variables, tpsSplin for comparing shape specimens, tpsRelw32/64 for relative warps analysis, tpsPLS for partial least-squares analysis of shape covariance, Edgewarp for thin-plate splines on 3D data, JSPLINE for thin-plate spline programs, VALSAIN for relative warps analysis in MATLAB, and shapes for statistical shape analysis procedures.

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    © All Rights Reserved
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    TPS

    Uploaded by

    Iseng Iseng
    157 views8 pages
    This document provides summaries of various software packages for analyzing shape data using thin-plate spline methods. The software packages described include tpsSmallw32/64 for testing shape variation, tpsTree32/64 for fitting thin-plate splines to trees, tpsRegr32/64 for multivariate regression of shape onto variables, tpsSplin for comparing shape specimens, tpsRelw32/64 for relative warps analysis, tpsPLS for partial least-squares analysis of shape covariance, Edgewarp for thin-plate splines on 3D data, JSPLINE for thin-plate spline programs, VALSAIN for relative warps analysis in MATLAB, and shapes for statistical shape analysis procedures.

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    morfometrik

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    This document provides summaries of various software packages for analyzing shape data using thin-plate spline methods. The software packages described include tpsSmallw32/64 for testing shape variation, tpsTree32/64 for fitting thin-plate splines to trees, tpsRegr32/64 for multivariate regression of shape onto variables, tpsSplin for comparing shape specimens, tpsRelw32/64 for relative warps analysis, tpsPLS for partial least-squares analysis of shape covariance, Edgewarp for thin-plate splines on 3D data, JSPLINE for thin-plate spline programs, VALSAIN for relative warps analysis in MATLAB, and shapes for statistical shape analysis procedures.

    Copyright:

    © All Rights Reserved
    Download as XLSX, PDF, TXT or read online from Scribd
    Download as xlsx, pdf, or txt
    157 views8 pages

    TPS

    Uploaded by

    Iseng Iseng
    This document provides summaries of various software packages for analyzing shape data using thin-plate spline methods. The software packages described include tpsSmallw32/64 for testing shape variation, tpsTree32/64 for fitting thin-plate splines to trees, tpsRegr32/64 for multivariate regression of shape onto variables, tpsSplin for comparing shape specimens, tpsRelw32/64 for relative warps analysis, tpsPLS for partial least-squares analysis of shape covariance, Edgewarp for thin-plate splines on 3D data, JSPLINE for thin-plate spline programs, VALSAIN for relative warps analysis in MATLAB, and shapes for statistical shape analysis procedures.

    Copyright:

    © All Rights Reserved
    Download as XLSX, PDF, TXT or read online from Scribd
    Download as xlsx, pdf, or txt
    of 8

    Thin-plate spline

    These programs provide various types of statistical analyses using partial warp scores as shape va

    tpsSmallw32

    Test for "small" variation in shape.Windows.Useto


    testwhetherthevariationinshapeamongasetof
    specimensistoolargeandthusstatisticalmethods
    basedonthetangentspaceapproximation(e.g.,thinplatesplinemethods)cannotbeused.Theprogramcan
    processboth2Dand3Ddatafiles.Outputfilesinclude
    consensusandalignedspecimens.tpssmallw64
    requires64bitversionsofWindows.The32bitversion
    iscompatiblewithWindowsXPto10.ByF.JamesRohlf.
    Version1.33.

    tpsSmallw64

    The old Version 1.03 (for Windows 3.1) is still available:[tpsSmall v


    tpsTree32

    Fit and visualize thin-plate splines on trees.Windows. Performs a le

    tpsTree64

    The older and more limited 16 bit Windows version is stillavailable

    tpsRegr32

    Multivariate multiple regression of shape onto


    independent variables.Windows.performsa
    multivariatemultipleregressionofshape(ascapturedby
    partialwarpscoresandtheuniformshapecomponent)
    ontooneormoreindependentvariables.Byappropriate
    settingupofindependentvariables,thisprogramcan
    performvarioustypesofMANOVAandMANCOVA.Can
    beusedtostudyallometry.ByF.JamesRohlf.Version
    1.42.The32bitversioniscompatiblewithWindowsXP
    to10.

    tpsRegr64

    Theold16bitversionisstillavailablebutismorelimited.
    TheolderDOSversionisalsoavailablebutdoesnot
    supportthenewfeaturesoftheWindowsversions:[DOS
    version][DOSDPMIversion]DOSversionsrequire
    the[BGI]Graphicsdrivers.

    tpsSplin

    Thin-plate spline.Windows.Programtocomparepairs
    ofspecimensbydisplayingaD'arcyThompsonstyle
    transformationgridbasedonathin-platespline.Several
    optionsaregivenforslidingsemilandmarks.The
    tpssplnw.exefileexpandsintoaWindowssetupprogram
    thatwillberunautomatically.The32bitversionis
    compatiblewithWindowsXPto10.ByF.JamesRohlf.
    Version1.20Thisprogramreplaces
    the[TPSPLINE]program(aDOSprogramwithalimitof
    40landmarksandrequiredthe[BGI]Graphicsdrivers)
    anditsDPMIversion[TPSPLINEP](withalimitof60
    landmarks).Readme.

    tpsRelw32

    Relative warps analysis.Windows.Performsarelative


    warpanalysis.Thiscorrespondstoaprincipal
    componentsanalysisofvariationinasample(relativeto
    bendingenergyifthealphaparameterisnotequalto
    zero).Displaysaplotofrelativewarpscoresanda
    "visualizationwindow"thatdisplaystheestimatedshape
    forarbitrarypointsintheordination.Alsodisplayspartial
    warpscoresandtheirvisualizations.Allowsslidingof
    semilandmarkpointsalongcurvestoachieveabetterfit
    (minimumbendingenergyorProcrustesdistance).
    Subsetsoflandmarkscanbeselected.Plotsln(Varof
    PW)vs.ln(BE)forstudiesofintegration.Version1.61.
    ByF.JamesRohlf.The32bitversioniscompatiblewith
    WindowsXPto10.

    tpsRelw64

    TheoldVersion1.11forWindows3.1isstillavailable:
    [tpsRelwv1.11]TheDOSversionisalsostillavailable
    butitdoesnotsupportmanyofthenewfeaturesinthe
    Windowsversion:[TPSRW].TheDOSversionrequires
    the[BGI]Graphicsdrivers.10/17/94.[TPSRWP]The
    DOSDPMIversionoftheTPSRWprogramwhiccan
    processlargerdatasets.10/17/94.Readmefile.

    tpsPLS

    Partial least-squares analysis for


    shapes.Windows.Usedtoexplorethecovariance
    betweenasetofvariablesandvariationinshapeor
    betweentwoshapes.Itperformsatwo-blockpartial
    least-squaresanalysis.Itdiffersfromregressioninthat
    bothvariablesandshapeareconsideredequally(oneis
    notconsideredtobeasetofindependentvariables
    measuredwithouterror).ItsuseisdescribedinRohlf
    andCorti(2000,SystematicBiology,49:740-753).ByF.
    JamesRohlf.Version1.22.The32bitversionis
    compatiblewithWindowsXPto10.

    Edgewarp

    Thin-plane splines and related methods for 3D


    data.LinuxandMacOSX.ReadsCTandothermedical
    imagesinDicomformatandproducesagrayscale
    volumewhichcanbenavigatedandlandmarkedbythe
    usualEdgewarptools.Available
    fromhttp://brainmap.stat.washington.edu/edgewarp.
    Therearelinkstothesoftware,documentation,and
    examplesByBillGreenandFredL.Bookstein.

    JSPLINE

    Thin-plate spline programs.DOS&Windows.AnFTP directorycon

    VECTOR
    VALSAIN

    Valsain workshop.MATLAB.Programtodoa
    relativewarpanalyis.ByLesMarcus.

    shapes

    The shapes package is a set of procedures for statistical shape an

    p scores as shape variables and/or expressing the results of a morphometric analysis as a shape deformation

    8/13/2015

    8/22/2015

    8/13/2015

    4/14/2004

    8/13/2015

    10/23/2014

    9/13/2005

    1/20/1994

    9/8/1993

    11/19/2003

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