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Clinical Neurophysiology xxx (2016) xxxxxx
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Clinical Neurophysiology
journal homepage: www.elsevier.com/locate/clinph
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Center for Fetal-Neonatal Neuroimaging and Developmental Science, Boston Childrens Hospital, Harvard Medical School, 1 Autumn St, Boston, MA 02215, USA
Division of Newborn Medicine, Department of Medicine, Boston Childrens Hospital, Harvard Medical School, 300 Longwood Ave, Boston, MA 02115, USA
Department of Neurology, Boston Childrens Hospital, Harvard Medical School, 300 Longwood Ave, Boston, MA 02115, USA
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Department of Radiology, Boston Childrens Hospital, Harvard Medical School, 300 Longwood Ave, Boston, MA 02115, USA
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Department of Anesthesia, Perioperative and Pain Medicine, Division of Critical Care Medicine, Boston Childrens Hospital, Harvard Medical School, 300 Longwood Ave, Boston,
MA 02115, USA
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a r t i c l e
i n f o
h i g h l i g h t s
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Article history:
Accepted 27 May 2016
Available online xxxx
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Keywords:
Status epilepticus
Intensive care unit
Burst-suppression
Monitoring
Electroencephalography
Neural network
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Multichannel real time system that automatically identifies burst-suppression.
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a b s t r a c t
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Objective: To develop a real-time monitoring system that has the potential to guide the titration of anesthetic agents in the treatment of pediatric status epilepticus (SE).
Methods: We analyzed stored multichannel electroencephalographic (EEG) data collected from 12 pediatric patients with generalized SE. EEG recordings were initially segmented in 500 ms time-windows.
Features characterizing the power, frequency, and entropy of the signal were extracted from each segment. The segments were annotated as bursts (B), suppressions (S), or artifacts (A) by two electroencephalographers. The EEG features together with the annotations were inputted in a three-layer feed
forward neural network (NN). The sensitivity and specificity of NNs with different architectures and
training algorithms to classify segments into B, S, or A were estimated.
Results: The maximum sensitivity (95.96% for B, 89.25% for S, and 75% for A) and specificity (89.36 for B,
96.26% for S, and 99.8% for A) was observed for the NN with 10 nodes in the hidden layer. By using this
NN, we designed a real-time system that estimates the burst-suppression index (BSI).
Conclusions: Our system provides a reliable real-line estimate of multichannel BSI requiring minimal
memory and computation time.
Significance: The system has the potential to assist intensive care unit attendants in the continuous EEG
monitoring.
2016 International Federation of Clinical Neurophysiology. Published by Elsevier Ireland Ltd. All rights
reserved.
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Abbreviations: A, artifact; B, burst; BCH, Boston Childrens Hospital; BFGS, BroydenFletcherGoldfarbShanno quasi-Newton backpropagation; BR, Bayesian
regularization; BS, burst-suppression; BSD, burst-suppression dynamic; BSI, burst-suppression index; BSP, burst-suppression probability; CM, confusion matrix; EDF,
European data format; EEG, electroencephalography; FN, false negative; FP, false positive; FPR, false positive rate; ICU, intensive care unit; LM, LevenbergMarquardt; MSE,
mean square error; NN, neural network; NPV, negative predicted value; PatternNet, pattern recognition NN; PPV, positive predicted value; ROC, receiver operating
characteristic; RP, Resilient backpropagation; S, suppression; SCG, scaled conjugate gradient; SE, status epilepticus; TN, true negative; TP, true positive; TPR, true positive rate.
Corresponding author at: Boston Childrens Hospital, Harvard Medical School, 300 Longwood Ave, Boston, MA 02115, USA. Tel.: +1 781 216 1128; fax: +1 781 216 1172.
E-mail address: [email protected] (C. Papadelis).
http://dx.doi.org/10.1016/j.clinph.2016.05.358
1388-2457/ 2016 International Federation of Clinical Neurophysiology. Published by Elsevier Ireland Ltd. All rights reserved.
Please cite this article in press as: Papadelis C et al. Real-time multi-channel monitoring of burst-suppression using neural network technology during
pediatric status epilepticus treatment. Clin Neurophysiol (2016), http://dx.doi.org/10.1016/j.clinph.2016.05.358
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1. Introduction
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have dealt with the EEG as a single channel (usually recorded from
central areas) assuming that its activity represents the activity of
the entire brain. This is because BS has classically been viewed as
a global state with synchronous activity throughout the cortex,
a perspective that was derived from previous EEG studies in which
periods of B and S have been shown to occur concurrently across
the scalp (Clark and Rosner, 1973). However, recent evidence of
intracranial electrocortigrams from patients who entered BS indicated that in contrast to previous characterizations, periods of B
could be substantially asynchronous across the cortex (Lewis
et al., 2013). Furthermore, it was shown that the state of BS itself
could occur in a limited cortical region while other areas exhibit
ongoing continuous activity.
Here, we describe the development of a multichannel EEGbased system that automatically identifies the BS patterns and estimates the BSI. The system was built using NN technology combining information from the amplitude, the frequency content, and
the entropy of the EEG signal. The NN was trained using multichannel EEG data from pediatric patients hospitalized in the ICU
and was validated against manual segmentation of the data by
two board certified electroencephalographers. Different architectures and training algorithms were tested. The NN showing the
best performance in terms of sensitivity and specificity for detecting the BS patterns was used for the design of the on-line system.
The on-line system was incorporated into a commercial EEG device
(eegoTM mylab, ANT Neuro, Netherlands). Our system has the potential to assist ICU attendants with continuous monitoring of the EEG
signal by providing reliable automatic estimates of the BSI in the
treatment of pediatric SE.
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2. Methods
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2.1. Patients
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Please cite this article in press as: Papadelis C et al. Real-time multi-channel monitoring of burst-suppression using neural network technology during
pediatric status epilepticus treatment. Clin Neurophysiol (2016), http://dx.doi.org/10.1016/j.clinph.2016.05.358
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Table 1
Patients demographic data (gender, age in years); primary admission diagnosis; final diagnosis/discharge; history of epilepsy; previous SE; sedation drug in ICU; number of EEG
datasets used in NN training, validation, and testing. M: male; F: female; FIRES: Febrile Infection-Related Epilepsy Syndrome.
ID
Gender
Age
Final diagnosis/Discharge
History of
Epilepsy
Previous
SE
Sedation drug
Number of
Datasets
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M
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Status epilepticus
FIRES
Tonic clonic seizure
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No
No
Yes
No
No
Isoflurane
Propofol
Pentrobarbital
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Yes
Yes
Pentobarbital
Yes
No
Pentobarbital
Yes
Yes
Isoflurane
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M
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Yes
Yes
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No
Pentobarbital
Isoflurane
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M
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M
Yes
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Yes
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No
Pentrobarbital
Pentobarbital
Pentobarbital
Pentobarbital
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Seizure Disorder
Bilateral subdurmal hematomas
Subdural Hematoma/Deceased
Tetralogy of Fallot
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was further used in the analysis. For the cases that there was not an
agreement between the two classifications, the segments were not
used in the analysis.
According to the literature, a common approach to quantitatively distinguish B and S is to define suppressions as EEG segments of less than a threshold voltage value, typically set at
between 0.5 and 20 lV, which last at least 500 ms (Rampli and
Laster, 1992; Niedermeyer et al., 1999). Here, we instructed
reviewers to mark as B, all segments with an activity having
approximately an amplitude of >10 lV and duration more than
half the segment duration >250 ms. Since the theoretical lower
amplitude during busts has been proposed to be at 20 lV (or
even higher) (Hirsch et al., 2013), reviewers also considered the
relevant amplitude change between the suppression and burst patterns in their assessment. All remaining segments were classified
as S, except segments classified empirically as artifacts (A). EEG
patterns having alternate segments of burst and suppression activity in one minute of continuous EEG recording were regarded as
distinct BS. EEG patterns having continuous burst activity in one
minute of continuous recording were regarded as indistinct BS.
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The data from two bipolar EEG channels (i.e. F3-C3 and F4-C4)
were used as inputs in the system. These two channels were
selected because they provide information from the frontal and
central areas of the brain. The data were initially chopped into segments of 500 ms duration. A line filter with cutoff frequencies of
0.6 and 30 Hz was applied to each segment. Then, the absolute
and the relative power for four different frequency bands of the
signal were estimated (i.e., delta (14 Hz), theta (47 Hz), alpha
(712 Hz), and beta (1230 Hz)), as well as the Shannon entropy
(Shannon, 1948). The boundaries of the frequency bands were
selected to include the entire spectrum of the EEG signal from 1
to 30 Hz. Fig. 1 displays 30 s of EEG recording (two bipolar channels) with the corresponding estimated power and frequency features of the signal.
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2.4. NN Design
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Please cite this article in press as: Papadelis C et al. Real-time multi-channel monitoring of burst-suppression using neural network technology during
pediatric status epilepticus treatment. Clin Neurophysiol (2016), http://dx.doi.org/10.1016/j.clinph.2016.05.358
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Fig. 1. Display of EEG recordings (bipolar channels: F3-C3 and F4-C4) and the estimated power and frequency features. Features are estimated for segments of 500 ms
duration: 1st and 5th rows: filtered EEG recordings, 2nd and 6th rows: absolute power for the different frequency bands represented with different colors (delta: blue, theta:
cyan, alpha: yellow, and beta: red), 3rd and 7th rows: relative power for the same frequency bands, and 4th and 8th rows: Shannon entropy measures. The user can adjust: (i)
the duration of the displayed EEG section, (ii) the selection of two representatives EEG channels (i.e. bipolar, monopolar montages), and (iii) the amplitude of the EEG signals.
(For interpretation of the references to color in this figure legend, the reader is referred to the web version of this article.)
Fig. 2. Schematic overview of (a) the off-line NN training process, and (b) the on-line system.
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was in classifying different segments. The training process continued until: (i) the difference between the predicted output and the
desired output/target became zero, (ii) the training reached a maximum number of epochs (1000)1, (iii) the number of validation
checks2 reached 6, or (iv) the magnitude of the minimum performance gradient3 became less than <10 5.
An epoch is a measure of the number of times all of the training vectors are used
once to update the weights.
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Validation checks are used to stop the training process early if the network
performance on the validation vectors fails to improve or remains the same.
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If training reaches a minimum of the performance, the gradient will become very
small.
For the validation set of the NN, we randomly selected 15% of all
segments. The goal of validation was to minimize the NN overfitting (see Geman et al., 1992). Overfitting occurs when the accuracy
over the training set increases, but the accuracy over the validation
set stays the same or decreases. In this case, the outputs perfectly
match the training set, but when the NN is used to make predictions for a new dataset it provides poor accuracy. Each algorithm
was validated using the following estimated measures, where: TP
is true positive, TN is true negative, FP is false positive, and FN is
false negative: (a) sensitivity = TP/(TP + FN)*100, (b) specificity = TN/(FP + TN)*100, (c) PPV (positive predicted value) = TP/
(TP + FP)*100, (d) NPV (negative predicted value) = TN/(TN + FN)
*100, and (e) the mean square error (MSE), which presents the dif-
Please cite this article in press as: Papadelis C et al. Real-time multi-channel monitoring of burst-suppression using neural network technology during
pediatric status epilepticus treatment. Clin Neurophysiol (2016), http://dx.doi.org/10.1016/j.clinph.2016.05.358
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between the two different montages. Statistical significant threshold was set to p < 0.01 (corrected for multiple comparisons).
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n
n
X
X
MSE 1=n errori 2 1=n Ti
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EEG signals were recorded using the eegoTM mylab EEG system
(ANT Neuro, Netherlands). On-line reading of the data was performed through the TMSI plugin of the MNE-X software (Dinh
et al., 2013). EEG data were saved as individual European data format (edf) files, each one having duration of one minute. The NN
showing the best performance was used for the development of
the on-line system (see Fig. 2b). The same procedure was followed
as in the off-line version of the algorithm regarding segmentation,
filtering, and the nine EEG features estimation (see Section 2.3.).
Afterwards, the features were estimated for each channel and feed
into the already trained NN. The on-line NN gives as outputs values
that range from 0 to 1 for each node. Each segment is then classified as B, S, or A according to the output value of each node and the
BSI is estimated for each minute of recording (see Fig. 1).
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3. Results
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Table 2 presents the MSE values for NNs with different architecture being trained with different training algorithms. Overall, MSE
was <0.1 for all NN architectures and all training algorithms except
for two NNs (BFGS with 5 and 15 nodes in the hidden layer). The
LM and BR training algorithms showed the lowest MSE regardless
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Oi 2
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Based on observations from previous electrocorticography studies (Lewis et al., 2013), we hypothesized that multichannel EEG
recordings contain significantly different information compared
to single (or dual-channel) recordings in terms of BS content. To
test our hypothesis, we explored our multichannel EEG data from
representative cases of our datasets showing patterns of distinct
BS, estimated the BSI for each bipolar channel and displayed them
on a topoplot color-coded map. We further estimated the BSI for all
of our datasets using: (i) two bipolar channels (i.e., F3-C3 and F4C4), and (iii) the full EEG sensor array (14 bipolar channels). The
first configuration was used because it represents the traditional
approach assuming that BS patterns from the central areas represent the activity of the entire brain. Repeated measures analysisof-variance (ANOVA) was used to assess differences in the BSI
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i1
where, n is the number of predictions, Ti is the target/desired output, and Oi is the predicted output. Target/desired output is the binary representation of the manual annotations; the output will be
zero when the segment is either A or S, and it will be 1 when the
segment is B. These values are inputted into the NN during training.
On the other hand, predicted output is the final result of the NN
after it has been trained. Unlike the target output, the predicted output is a number between 0 and 1 and not a binary number. The MSE
is basically a network performance function and it assesses the
quality of the predictor/NN. The MSE for NNs with different number
of hidden layer neurons and different training algorithms was
calculated.
For the testing set of the NN, we randomly selected 15% of all
segments. The testing set was used to estimate the performance
of the NN on data which were not used before for validation or
training. The main reason of using the testing set was to check
whether the training was sufficient and whether the validation
prevented overfitting.
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Please cite this article in press as: Papadelis C et al. Real-time multi-channel monitoring of burst-suppression using neural network technology during
pediatric status epilepticus treatment. Clin Neurophysiol (2016), http://dx.doi.org/10.1016/j.clinph.2016.05.358
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Fig. 3. Summary of EEG BS patterns. The four common patterns are shown: (a) patterns containing periodic discharges, (b) patterns with distinct BS, (c) patterns with
indistinct BS and (d) signals contaminated with artifacts.
Table 2
MSE for NNs with different number of nodes and trained with different algorithms.
Algorithm
BFG
BR
SCG
LM
RP
10
15
20
25
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0.1053
0.0327
0.0765
0.0328
0.0942
0.0877
0.0311
0.0747
0.0314
0.0884
0.1061
0.0315
0.0811
0.0311
0.0836
0.0418
0.0019
0.0650
0.0314
0.0791
0.0565
0.0308
0.0649
0.0308
0.0762
0.0422
0.0312
0.0631
0.0306
0.0839
0.0485
0.0311
0.0682
0.0310
0.0781
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Table 3 presents the training time for NNs with different architectures being trained with different training algorithms. The fastest algorithm was the RP with mean training time 16 min. The
slowest algorithm was the BR with mean training time
1186 min. Remarkable increase of training timing (in most cases)
was observed by the addition of more nodes in the hidden layer.
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3.5. Artifact
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SCG and BFGS showed zero sensitivity and specificity of 99% for
the detection of A segments regardless of the training configuration. The mean sensitivity and specificity for the rest of algorithms
(LM, BR and RP) was 74.29% 28 and 99.76% 0.11 respectively.
The sensitivity and specificity of the NN with 10 nodes in the hidden layer that was trained with the LM algorithm were 75% and
99.8% respectively.
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The overall PPV and NPV ranged between 69.8% and 99.3%, and
between 68.8% and 99.03% respectively. For the NN presenting the
best performance, the PPV for detecting B, S, and A segments were
95.69%, 90.22% and 60% respectively. For this NN configuration, the
corresponding NPV values were 89.68%, 95.86% and 99.9%.
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Please cite this article in press as: Papadelis C et al. Real-time multi-channel monitoring of burst-suppression using neural network technology during
pediatric status epilepticus treatment. Clin Neurophysiol (2016), http://dx.doi.org/10.1016/j.clinph.2016.05.358
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BFG
BR
SCG
LM
RP
02:26
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06:06
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19:20
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15:20
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Fig. 4. Sensitivity and specificity (%) of NNs with different configurations (number of nodes in the hidden layer and different algorithms) for detecting the B segments.
Fig. 5. Sensitivity and specificity (%) of NNs with different configurations (number of nodes in the hidden layer and different algorithms) for detecting the S segments.
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Please cite this article in press as: Papadelis C et al. Real-time multi-channel monitoring of burst-suppression using neural network technology during
pediatric status epilepticus treatment. Clin Neurophysiol (2016), http://dx.doi.org/10.1016/j.clinph.2016.05.358
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Fig. 6. Confusion matrix (a) and ROC curve (b) for the NN configuration showing the best performance. In the CM, the total percent of correctly classified was 94% and the
total percent of the misclassified cases was 6%. Also ROC showed perfect classification, since all the cases were above the diagonal and close to the left-top corner.
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3% of the B segments were misclassified as Suppression. The number of B and S segments that were misclassified as S were minimal
0.1%. In our NN, all the cases were above the diagonal in the ROC
curve and close to the top left corner; this finding indicates an
excellent classification of segments by our NN.
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Analysis between the BSI values estimated by manual annotations (using variable segment lengths) and the NN revealed no statistically significant differences (two tail; p = 0.535).
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4. Discussion
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activity it records represents the activity from the entire brain. This
is in contrast to most recent evidence showing that episodes of B
could be substantially asynchronous across the cortex (Lewis
et al., 2013), and to our results showing significant differences in
the BSI values when the entire EEG sensor array is used in the estimates compared to when two channels are used. Here, we demonstrate the development of an on-line system that can automatically
detect the BS patterns in multichannel EEG recordings, and estimate the BSI considering information from all the channels. The
system was designed using NN technology, and was tested and validated on long recordings (159 h and 18 min) from 12 pediatric
patients with SE. It shows excellent agreement between the automated and manual classification of BS segments and requires minimal memory and computation time.
Compared to previously proposed solutions, our system adds
new value in the following aspects: (i) it considers the local
dynamics of BS, (ii) it uses NN technology allowing tailoring the
system to detect BS patterns from different patient populations,
anesthetic drugs, montages, and medical conditions having potentially different features, (iii) it can be tested using very large datasets, (iv) it detects and classifies automatically segments
contaminated by artifacts, and (v) it does not require any parameter to optimize its performance.
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Please cite this article in press as: Papadelis C et al. Real-time multi-channel monitoring of burst-suppression using neural network technology during
pediatric status epilepticus treatment. Clin Neurophysiol (2016), http://dx.doi.org/10.1016/j.clinph.2016.05.358
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Fig. 7. Multichannel EEG recordings (14 bipolar channels) from two representative patients and the corresponding topoplot BSI maps. Green vertical boxes indicate
prominent differences in the BS patterns across channels. Inset figure indicates the spatial distribution of BSI over the scalp (the degree of suppression is color-coded: blue
indicates low, and red indicates higher suppression activity). (For interpretation of the references to color in this figure legend, the reader is referred to the web version of this
article.)
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Please cite this article in press as: Papadelis C et al. Real-time multi-channel monitoring of burst-suppression using neural network technology during
pediatric status epilepticus treatment. Clin Neurophysiol (2016), http://dx.doi.org/10.1016/j.clinph.2016.05.358
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along the pattern. It also varies in terms of frequency and amplitude across different drugs and different pathological conditions.
For example, animal studies have found that different drugs induce
very different patterns of BS (Kenny et al., 2014). In rodents,
remarkable differences were observed between B and S durations
and peak-to-peak amplitudes between propofol, etomidate,
thiopental, and isoflurane. In rabbits, differences were observed
between propofol and isoflurane. BS patterns also vary widely in
amplitude and spectral characteristics in different pathological
conditions (Srkel et al., 2002; Niedermeyer et al., 1999;
Niedermeyer, 2009). Different patterns of BS were observed in
our study (periodic discharges, patterns with distinct BS, and patterns with indistinct BS) (see Fig. 3). Our system showed an excellent performance (in terms of sensitivity and specificity) for the
detection of BS patterns independently of the observed pattern
(no differences were observed between datasets with different patterns). This could be due to the fact that the NN considers information from the amplitude, the frequency content, and the
complexity of the EEG signal. Thus, the full spectrum of information that can be extracted from a signal was used for the classification of segments to B, S, and A. This highlights the flexibility of our
system in the classification of EEG segments with different signal
features. Our system can be potentially trained using even larger
datasets of annotated recordings from specific patient populations.
Thus, it can be tailored to offer excellent performance for these
specific patient groups and medical conditions.
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Appendix A
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The SCG algorithm (Moller, 1993) is a supervised learning algorithm that is based upon a class of optimization techniques known
in numerical analysis as the Conjugate Gradient Methods. The SCG
trains the NN by adjusting its weights. Since SCG does not perform
a line search at each iteration (which is usually a time consuming
process), it is faster than other algorithms such as the LM, BR and
BFGS.
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pediatric status epilepticus treatment. Clin Neurophysiol (2016), http://dx.doi.org/10.1016/j.clinph.2016.05.358
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Please cite this article in press as: Papadelis C et al. Real-time multi-channel monitoring of burst-suppression using neural network technology during
pediatric status epilepticus treatment. Clin Neurophysiol (2016), http://dx.doi.org/10.1016/j.clinph.2016.05.358