Crystallography Matters!: International Year of Crystallography 2014
Crystallography Matters!: International Year of Crystallography 2014
Crystallography Matters!: International Year of Crystallography 2014
Crystallography matters!
Published by the United Nations Educational,
Scientific and Cultural Organization
7, place de Fontenoy, 75352 Paris 07 SP, France
UNESCO 2013
All rights reserved
Original title: Crystallography matters!
Coordinator/Editor: Susan Schneegans
Front cover photos : Aeroplane Shutterstock/IM_photo; Scientist in Africa @ FAO
Back cover photo: Young family watching TV @ Shutterstock/Andrey_Popov
Composed and printed
in the workshops of UNESCO
The printer is certified ImprimVert,
the French printing industrys environmental initiative.
Printed in France
SC-2013/WS/9
CLD 1251.13
What is crystallography?
Crystals can be found everywhere in nature. They are particularly abundant in rock
formations as minerals (gemstones, graphite, etc.) but can also be found elsewhere,
examples being snowflakes, ice and grains of salt. Since ancient times, scholars have
been intrigued by the beauty of crystals, their symmetrical shape and variety of
colours. These early crystallographers used geometry to study the shape of crystals in
the natural world.
In the early 20th century, it was realized that X-rays could be used to see the
structure of matter in a non-intrusive manner. This marks the dawn of modern
crystallography. X-rays had been discovered in 1895. They are beams of light that
are not visible to the human eye. When X-rays hit an object, the objects atoms
scatter the beams. Crystallographers discovered that crystals, because of their
regular arrangement of atoms, scattered the rays in just a few specific directions.
Bymeasuring these directions and the intensity of the scattered beams, scientists
were able to produce a three-dimensional picture of the crystals atomic structure.
Crystals were found to be ideal subjects for studying the structure of matter at the
atomic or molecular level, on account of three common characteristics: they are
solids, three-dimensional and built from very regular and often highly symmetrical
arrangements ofatoms.
Thanks to X-ray crystallography, scientists can study the chemical bonds which draw
one atom to another. Take graphite and diamonds, for instance. These minerals
hardly look alike: one is opaque and soft (graphite is used to make pencils), whereas
the other is transparent and hard. Yet graphite and diamonds are close relatives,
chemically speaking, both being composed of carbon. It is the ability to disperse light
owing to the structure of its chemical bonds which gives a diamond its shine.
Weknow this thanks to X-ray crystallography.
At first, X-ray crystallography could only be used to look at solid crystals with a
regular arrangement of atoms. It could study minerals, for instance, and many other
compounds, such as salt or sugar. It could also study ice but only until it melted.
Crystallography matters!
A chunk of graphite
(left) and a rough
diamond (right).
These two crystals
may not look alike
but they are actually
closely related,
as both are pure
carbon. What gives
the diamond its
shine is its ability to
disperse light, owing
to the structure of its
chemical bonds.
Photos: Wikipedia
Crystallography matters!
2
This is because, in a liquid, the movement
of molecules made it impossible to register
a scattered signal that could be interpreted.
Crystallographers discovered that they could
study biological materials, such as proteins
or DNA, by making crystals of them. This
extended the scope of crystallography to
biology and medicine. The discovery came at
a time when the growing power of computers
was making it possible to model the structure
of these more complex crystals.
Source: diffraction pattern image, Physical Review Letters (1984), vol. 53, pages 19511953;
image from the mosaic, Moroccan Crystallographic Association
Moroccan artisans (Maalems) have actually known about the patterns found in quasicrystals for centuries. Seven hundred
years separate the two images above. The image on the left shows the diffraction pattern of a quasicrystal obtained by Dan
Shechtman in 1984. The photo on the right shows a fine mosaic (zellije) in the Attaraine Madrasa in Fez (Morocco), dating from the
14thcentury. The images look remarkably similar, with both showing pentagonal patterns.
A brief history
Throughout history, people have been fascinated by the beauty and mystery
of crystals. Two thousand years ago, Roman naturalist Pliny the Elder admired
the regularity of the six-sided prisms of rock crystals. At the time, the process of
crystallizing sugar and salt was already known to the ancient Indian and Chinese
civilizations: cane sugar crystals were manufactured from sugar cane juice in
India and, in China, brine was boiled down into pure salt. Crystallization was also
developed in Iraq in the 8th century CE. Two hundred years later, Egypt and the
region of Andalucia in Spain would master the technique of cutting rock crystals
for use in utensils and decorative items like the box pictured here. In 1611, German
mathematician and astronomer Johannes Kepler was the first to observe the
symmetrical shape of snowflakes and infer from this their underlying structure.
Less than 200 years later, French mineralogist Ren Just Hay would discover the
geometrical law of crystallization.
In 1895, X-rays were discovered by William Conrad Rntgen, who was awarded the
first Nobel Prize in Physics in 1901. It was Max von Laue and his co-workers, however,
who would discover that X-rays travelling through a crystal interacted with it and, as a
result, were diffracted in particular directions, depending on the nature of the crystal.
This discovery earned von Laue the Nobel Prize in Physics in 1914.
Between the 1920s and the 1960s, X-ray crystallography helped to reveal some
of the mysteries of the structure of life, with great ramifications for health care.
DorothyHodgkin solved the structures of a number of biological molecules, including
cholesterol (1937), penicillin (1946), vitamin B12 (1956) and insulin (1969). She was
awarded the Nobel Prize in Chemistry in 1964. Sir John Kendrew and MaxPerutz were
the first to work out the crystal structure of a protein, earning them the NobelPrize
in Chemistry in 1962. Since that breakthrough, the crystal structure of over
90,000proteins, nucleic acids and other biological molecules has been determined
using X-ray crystallography.
One of the biggest milestones of the 20th century was the discovery of the crystal
structure of DNA by James Watson and Francis Crick. Perhaps less well known is the
fact that their discovery was made on the basis of diffraction experiments carried
out by Rosalind Franklin, who died prematurely in 1958. The discovery of the double
helix paved the way to macromolecule and protein crystallography, essential tools of
the biological and medical sciences today. Watson and Crick were rewarded with the
Nobel Prize in Physiology or Medicine in 1962, together with Maurice Wilkins, who
had worked with Rosalind Franklin.
Crystallography and crystallographic methods have continued to develop over the
last 50years; in 1985, for example, the Nobel Prize in Chemistry was awarded to Herb
Hauptman and Jerome Karle for developing new methods of analysing crystal structures.
As a result, the crystal structures of more and more compounds have been solved.
Recent Nobel Prizes have been awarded to Venkatraman Ramakrishnan, Thomas
Steitz and Ada Yonath (2009, see page 8), to Andre Geim and Konstantin Novoselov
(2010) for their groundbreaking work on graphene, the first of a new class of twodimensional crystalline materials with unique electronic and mechanical properties,
to Dan Shechtman (2011) for the discovery of quasicrystals (see box on facing page)
and to Robert Lefkowitz and Brian Kobilka (2012) for revealing the inner workings
of an important family of cell receptors which govern nearly every function of the
human body.
Crystallography matters!
Equally important was the discovery by father and son team William Henry Bragg
and William Lawrence Bragg in 1913 that X-rays could be used to determine the
positions of atoms within a crystal accurately and unravel its three-dimensional
structure. Known as Braggs Law, this discovery has largely contributed to the modern
development of all the natural sciences because the atomic structure governs the
chemical and biological properties of matter and the crystal structure most physical
properties of matter. The Bragg duo was awarded the Nobel Prize in Physics in 1915.
Crystallography matters!
Cocoa butter, the most important ingredient of chocolate, crystallizes in six different forms
but only one melts pleasantly in the mouth and has the surface sheen and crisp hardness
that make it so tasty. This tasty crystal form is not very stable, however, so it tends to
convert into the more stable form, which is dull, has a soft texture and melts only slowly in
the mouth, producing a coarse and sandy sensation on the tongue. Luckily, the conversion
is slow but if chocolate is stored for a long time or at a warm temperature, it can develop
a bloom, a white, filmy residue that results from recrystallization. Chocolate-makers thus
have to use a sophisticated crystallization process to obtain the most desirable crystal form,
the only one accepted by gourmets and consumers. Photo: Wikipedia
Crystallography matters!
The Curiosity rover used X-ray crystallography in October 2012 to analyse soil samples on the planet Mars! NASA had equipped the rover
with a diffractometer. The results suggested that the Martian soil sample was similar to the weathered basaltic soils of Hawaiian volcanoes.
Photo: NASA
Crystallography matters!
Why now?
The International Year of Crystallography commemorates the centennial of the birth
of X-ray crystallography, thanks to the work of Max von Laue and William Henry and
William Lawrence Bragg. The year 2014 also commemorates the 50th anniversary of
another Nobel Prize, that awarded to Dorothy Hodgkin for her work on vitamin B12
and penicillin (see page 3 A brief history).
Even though crystallography underpins all the sciences today, it remains relatively
unknown to the general public. One aim of the Year will be to promote education and
public awareness through a variety of activities (see overleaf Who will benefit from the
International Year of Crystallography?).
Crystallographers are active in more than 80 countries, 53 of which are members of
the International Union of Crystallography (see map). The Union ensures equal access
to information and data for all its members and promotes international cooperation.
There is a need to broaden the base of crystallography, in order to give more
developing countries expertise in this critical field for their scientific and industrial
development. This is all the more urgent in that crystallography will play a key role in
the transition to sustainable development in coming decades.
IUCr
Food challenges
The world population is expected to grow from 7 billion in 2011 to 9.1 billion by 2050.
The combination of rapid population growth and a diet more heavily reliant on meat
and dairy products than in the past may increase the demand for food by 70% by
2050. This presents a major challenge for agriculture.
State-of-the-art crystallographic techniques are driving research in the agricultural and
food sectors. Crystallography can be used to analyse soils, for instance. One serious cause
of deteriorating soils is salinization, which can occur naturally or be induced by human
activities.
Structural studies on plant proteins can help to develop crops which are more
resistant to salty environments.
Crystallography can also contribute to the development of cures for plant and animal
diseases, one example being research into canker in crop species like tomatoes, or the
development of vaccines to prevent diseases such as avian or swine flu.
In addition, crystallographic studies of bacteria are important for the production of
food products derived from milk, meat, vegetables and other plants.
Water challenges
Crystallography can help to improve water quality in poor communities, for instance,
by identifying new materials which can purify water for months at a time, such as
nanosponges (tap filters) and nanotablets. It can also help to develop ecological
solutions to improve sanitation.
Energy challenges
Whereas energy was absent from the Millennium Development Goals, it should
be a key focus of the post-2015 development agenda. In September 2011, the
UN Secretary-General launched the Sustainable Energy for All initiative. It comes
at a time of growing concern over the impact of fossil-fuel intensive economies
on the Earths climate and recognition of the need to accelerate the transition
to sustainable sources of energy. According to the International Energy Agency,
carbon dioxide (CO2) emissions increased by 5% to 30.6 gigatons (Gt) between
2008 and 2010, despite the international financial crisis. If the world is to keep
global warming to 2C this century, CO2 emissions by the energy sector must not
exceed 32 Gt by 2020.
Crystallography matters!
Although the world recently met the Millennium Development Goal target
of halving the proportion of people without access to safe drinking water by
2015, sub-Saharan Africa and the Arab region are lagging behind, according to
the World Water Development Report (2012) produced by the United Nations.
The same target for basic sanitation currently appears out of reach, as half
the population in developing regions still lacks access. Moreover, the number
of people in cities who lack access to a clean water supply and sanitation is
estimated to have grown by 20% since the Millennium Development Goals
were established in 2000. The urban population is forecast to nearly double to
6.3billion in 2050, up from 3.4billion in 2009.
Crystallography matters!
8
Yet global energy consumption is expected to climb by 50% between 2007 and 2035,
with non-OECD countries accounting for 84% of the increase. In 2009, 1.4 billion
people still lacked access to electricity. Demand for energy from renewable resources
is expected to rise by 60% by 2035.
Crystallography can develop new products which lower a homes energy consumption
(and heating bill) while curtailing carbon emissions, such as insulating materials. It can
also identify new materials which reduce the cost of solar panels, windmills and batteries
while making them more efficient, to reduce wastage and improve access to green
technologies.
Health challenges
Health challenges will remain daunting in the decades to come. There is still no
effective vaccine or cure for such pandemics as HIV/AIDs, dengue fever and malaria,
for instance, which continue to ravage the developing world in particular.
Many health problems in developing countries are linked to the lack of access to
clean water and safe sanitation, including diaorrheal diseases like cholera or the
chronic disease schistosomiasis, with an estimated 90% of cases at least reported
inAfrica.
However, developing countries are also exposed to the same chronic health burdens
as developed countries, including heart disease, cancer and, increasingly, diabetes
(see photo).
Other serious health concerns that affect rich and poor countries alike include the
emergence of new pathogens and the growing resistance of bacteria to existing
medical treatments.
Crystallography can tackle the growing resistance of bacteria to antibiotics, for instance.
Together with Venkatraman Ramakrishnan and Thomas Steitz, crystallographer
AdaYonath has managed to determine the structure of the ribosome and the way it is
disrupted by antibiotics. Ribosomes are responsible for the production of all proteins in
living cells, including those of humans, plants and bacteria. If the work of the ribosome is
impeded, the cell dies. Ribosomes are a key target for antibiotics, as antibiotics are able
to attack the ribosomal activity of harmful bacteria while leaving human ribosomes
untouched. In 2008, Prof. Yonath was awarded the LOral-UNESCO Prize for Women in
Science for her work and, a year later, all three scientists received the Nobel Prize.
The tropics in particular are blessed with a rich biodiversity that often remains
underexploited. Crystallography can help countries to identify the properties and
behaviour of endogenous plants, with a view to developing skin and health care products,
herbal remedies and so on.
L p
roblem-solving projects for
school pupils which use their
knowledge of crystallography,
physics and chemistry;
L a travelling exhibition for
schools and universities on
Crystallography and Geometric
Art in the Arabo-Islamic World,
organized by the Moroccan
Association of Crystallography (see
box page 12). The exhibition will
also demonstrate crystallization
and X-ray diffraction using a
portable diffractometer.
Crystallography matters!
L h
ands-on demonstrations and
competitions in primary and
secondary schools;
Crystallography matters!
10
The Year will target the general public
To increase awareness of the way in which crystallography
underpins most of the technological developments in modern
society but also its role in cultural heritage and art history, via:
L p
ublic conferences organized by members of the
International Union of Crystallography on themes like
the paramount importance of protein crystal structures
in drug design, crystallography and symmetry in art, or
crystallographic analysis of artworks and ancient materials;
L s ponsorship of poster exhibitions highlighting the
usefulness and marvels of crystallography;
L t he submission of articles to the press, television and other
media on the contribution crystallography makes to the
global economy.
Serah Kimani
In 2011, the International Union of Crystallography designed an ambitious programme for sub-Saharan African countries.
Known as the Crystallography in Africa Initiative, the programme not only trains teaching staff and PhD students in
crystallography but also provides participating universities with diffractometers worth between 80,000 and 150,000 euros
each, in order to enable them to conduct international research. A key partner in this endeavour is Bruker France, a private
enterprise which has agreed to supply diffractometers in perfect working order to all the universities identified by the
Union. The Union covers the cost of delivering the diffractometer to each university. In return, the recipient universities
maintain the diffractometer and cover the cost of related equipment, such as the computer and X-ray tube.
The first faculty staff to be trained in how to use these instruments comes from the University of Dschang in Cameroon.
Teaching staff and PhD students were given an intensive 20-hour course in February 2012, in order to prepare them for the
arrival of the diffractometer the following year.
The Cameroon Crystallographic Association was founded at this time. The fledgling association ran its first course from 7
to 13 April 2013 in Dschang. The course focused on how to use diffraction to determine crystalline structures and attracted
24 professors and PhD students from universities across Cameroon and the wider sub-region. It was cofinanced by the
International Union of Crystallography, Cameroon Crystallographic Association, University of Dschang and Bruker.
Crystallography matters!
11
Crystallography matters!
12
SYMMETRY IN ART AND ARCHITECTURE
Be it a human face, a flower, a fish, a butterfly or a non-living object like a seashell , symmetry pervades the natural world. It has
always fascinated human civilizations, which have reflected symmetry in their art and architecture for thousands of years.
Symmetry can be found in all human expressions of creativity: carpets and rugs, pottery, ceramics,
drawing, painting, poetry, sculpture, architecture, calligraphy, etc. There is symmetry in the Chinese
alphabet, for instance. Symmetry in Chinese art and architecture is a manifestation of the Chinese
philosophy of seeking harmony through balance.
Art and architecture may demonstrate different forms of symmetry.
A pattern that repeats itself indefinitely is said to show
translational symmetry. Itcan be one-dimensional like
the frieze below, or two-dimensional like the winged
animals in the imagehere.
Chinese
symbol for
happiness,
pronounced
shuangxi
If a figure can be
rotated about its axis or
a particular point without
changing the way it looked
originally, it is said to show
rotational symmetry. The pyramids
of Giza in Egypt, for instance, show
rotational symmetry of order four (including
the base). The interior of the dome of the Lotfollah Mosque in Iran
(pictured) shows rotational symmetry of order 32, starting around the
point located at the centre of the figure.
Kolams like this one in Tamil Nadu are drawn in rice powder or chalk
in front of homes to bring prosperity. They can be renewed daily.
Photo: Wikipedia
Al-Attarine Madrasa (school) in Fez, Morocco, a World Heritage property. It was built by
theMarinidSultan Uthman II Abu Said in 13231325.
A. Thalal
Crystallography matters!
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Crystallography matters!
14
The government should also foster the development of ties between the national
crystallography centre and national and international synchrotron light sources like
SESAME in Jordan (see photo).
In order to share knowledge of scientific and technological developments in
crystallography and give greater visibility to the publications of crystallographers
from developing countries in particular, the International Union of Crystallography is
launching an open-access journal on crystallography, IUCrJ (see photo page 11).
UNESCO and the International Union of Crystallography are also encouraging
governments to set up regional or sub-regional hubs offering training and
experimentation in crystallography, in order to rationalize resources for institutional
capacity-building.
Crystallography matters!
15
Crystallography matters!
16
To participate in the
International Year of Crystallography
The 195 Member States of UNESCO are invited to contact UNESCOs team within the International Basic Sciences
Programme (IBSP) or the International Union of Crystallography, in order to put together a programme for
implementation in their country in 2014.
UNESCO
www.iycr2014.org
Crystallography matters!
UNESCO
President: [email protected]
Programme: [email protected]
Dr Jean-Paul Ngome Abiaga,
Assistant Programme Specialist: [email protected]
Dr Ahmed Fahmi,
Programme Specialist: [email protected]
w w w.iycr2014.org