GMT Tutorial
GMT Tutorial
Version 4.1.3
A Map-Making Tutorial
by
Walter H. F. Smith
Laboratory for Satellite Altimetry
NOAA/NESDIS/NODC
June 2006
Contents
INTRODUCTION
GMT overview: History, philosophy, and usage
Historical highlights . . . . . . . . . . . .
Philosophy . . . . . . . . . . . . . . . .
Why is GMT so popular? . . . . . . . . .
GMT installation considerations . . . . .
1
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
1
1
1
1
1
1
SESSION ONE
1.1 Tutorial setup . . . . . . . . . . . . . . . . . . . . . . . . .
1.2 The GMT environment: What happens when you run GMT?
1.2.1 Input data . . . . . . . . . . . . . . . . . . . . . . .
1.2.2 Job Control . . . . . . . . . . . . . . . . . . . . . .
1.2.3 Output data . . . . . . . . . . . . . . . . . . . . . .
1.3 The UNIX Environment: Entry Level Knowledge . . . . . .
1.3.1 Redirection . . . . . . . . . . . . . . . . . . . . . .
1.3.2 Piping (|) . . . . . . . . . . . . . . . . . . . . . . .
1.3.3 Standard error (stderr) . . . . . . . . . . . . . . . .
1.3.4 File name expansion or wild cards . . . . . . . . .
1.4 Laboratory Exercises . . . . . . . . . . . . . . . . . . . . .
1.4.1 Linear projection . . . . . . . . . . . . . . . . . . .
1.4.2 Logarithmic projection . . . . . . . . . . . . . . . .
1.4.3 Mercator projection . . . . . . . . . . . . . . . . . .
1.4.4 Albers projection . . . . . . . . . . . . . . . . . . .
1.4.5 Orthographic projection . . . . . . . . . . . . . . .
1.4.6 Eckert IV and VI projection . . . . . . . . . . . . .
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
2
2
2
2
3
3
4
4
4
4
4
5
5
5
6
6
7
7
SESSION TWO
2.1 General Information . .
2.1.1 Examples . . .
2.1.2 Exercises . . .
2.1.3 More exercises
2.2 Plotting text strings . .
2.3 Exercises . . . . . . .
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
8
8
10
10
11
12
13
SESSION THREE
3.1 Contouring gridded data sets . . . . . . .
3.1.1 Exercises . . . . . . . . . . . . .
3.2 Gridding of arbitrarily spaced data . . . .
3.2.1 Nearest neighbor gridding . . . .
3.2.2 Gridding with Splines in Tension
3.2.3 Preprocessing . . . . . . . . . . .
3.3 Exercises . . . . . . . . . . . . . . . . .
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
14
14
14
15
15
16
16
17
SESSION FOUR
4.1 Cpt files . . . . . . . . . .
4.1.1 Exercises . . . . .
4.2 Illumination and intensities
4.3 Color images . . . . . . .
4.3.1 Exercises . . . . .
4.4 Perspective views . . . . .
4.4.1 Mesh-plot . . . . .
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
18
18
19
19
19
20
21
21
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
ii
CONTENTS
4.4.2
5
References
iii
Color-coded view . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
21
23
CONTENTS
INTRODUCTION
The purpose of this tutorial is to introduce new users to GMT, outline the GMT environment, and enable
you to make several forms of graphics without having to know too much about UNIX and UNIX tools. We
will not be able to cover all aspects of GMT nor will we necessarily cover the selected topics in sufficient
detail. Nevertheless, it is hoped that the exposure will prompt the users to improve their GMT and UNIX
skills after completion of this short tutorial.
Philosophy
GMT follows the UNIX philosophy in which complex tasks are broken down into smaller and more manageable components. Individual GMT modules are small, easy to maintain, and can be used as any other
UNIX tool. GMT is written in the ANSI C programming language (very portable), is POSIX compliant,
and is independent of hardware constraints (e.g., memory). GMT was deliberately written for commandline usage, not a windows environment, in order to maximize flexibility. We standardized early on to use
PostScript output instead of other graphics formats. Apart from the built-in support for coastlines, GMT
completely decouples data retrieval from the main GMT programs. GMT uses architecture-independent
file formats.
1. SESSION ONE
1.1
Tutorial setup
1. We assume that GMT has been properly and fully installed and that you have the statement setenv
GMTHOME <path to GMT directory> in your .login as described in the GMT README
file.
2. All GMT man pages, documentation, and example scripts are available from the GMT documentation
web page. It is assumed these pages have been installed locally at your site; if not they are always
available from the main GMT home page1 .
3. We recommend you create a sub-directory called tutorial, cd into that directory, and copy all the
tutorial files directly there with cp -r $GMTHOME/tutorial/* . .
4. As we discuss GMT principles it may be a good idea to consult the GMT Technical Reference and
Cookbook for more detailed explanations.
5. The tutorial uses the supplemental GMT program grdraster to extract subsets of global gridded
data sets. For your convenience we also supply the subsets in the event you do not wish to install
grdraster and the public data sets it can read. Thus, run the grdraster commands if you have made
the installation or ignore them if you have not.
6. For all but the simplest GMT jobs it is recommended that you place all the GMT (and UNIX) commands in a cshell script file and make it executable. To ensure that UNIX recognizes your script as
a cshell script it is a good habit always to start the script with the line #!/bin/csh. All the examples
in this tutorial assumes you are running the cshell ; if you are using something different then you are
on your own.
7. Making a script executable is accomplished using the chmod command, e.g., the script figure 1.csh
is made executable with chmod +x figure 1.csh.
8. To view a PostScript file (e.g., map.ps) on a UNIX workstation we use ghostview map.ps. On some
systems there will be similar commands, like imagetool and pageview on Sun workstations. In this
text we will refer to ghostview; please substitute the relevant PostScript previewer on your system.
9. Please cd into the directory tutorial. We are now ready to start.
1.2
To get a good grasp on GMT one must understand what is going on under the hood. Figure 1.1 illustrates
the relationships you need to be aware of at run-time.
1.2.1
Input data
A GMT program may or may not take input files. Three different types of input are recognized (more
details can be found in Appendix B in the Technical Reference):
1. Data tables. These are spreadsheet tables with a fixed number of columns and unlimited number
of rows. We distinguish between two groups:
ASCII (Preferred unless files are huge)
Single segment [Default]
1 http://gmt.soest.hawaii.edu
JOB CONTROL
INPUT
GMT
Application
Program Defaults
OUTPUT
PostScript Plot File
Support Data
(Hidden)
Optional
Exit Status
Required
1.2.2
Job Control
1.2.3
Output data
1.3
1.3.1
Most GMT programs read their input from the terminal (called stdin) or from files, and write their output
to the terminal (called stdout). To use files instead one can use UNIX redirection:
GMTprogram input-file >! output-file
GMTprogram < input-file >! output-file
GMTprogram input-file >> output-file
1.3.2
Piping (|)
Sometimes we want to use the output from one program as input to another program. This is achieved with
UNIX pipes:
Someprogram | GMTprogram1 | GMTprogram2 >!
1.3.3
Most UNIX and GMT programs will on occasion write error messages. These are typically written to a
separate data stream called stderr and can be redirected separately from the standard output (which goes to
stdout). To redirect error messages we use
UNIXprogram >& errors.log
When we want to save both program output and error messages to separate files we use the following
syntax:
(GMTprogram > output.d) >& errors.log
1.3.4
UNIX provides several ways to select groups of files based on name patterns (Table 1.1):
Code
*
?
[list]
[range]
Meaning
Matches anything
Matches any single character
Matches characters in the list
Matches characters in the given range
Examples
GMTprogram data *.d operates on all files starting with data and ending in .d.
GMTprogram line ?.d works on all files starting with line followed by any single character and
ending in .d.
GMTprogram section 1[0-9]0.part [12] only processes data from sections 100 through 190, only
using every 10th profile, and gets both part 1 and 2.
1.4
Laboratory Exercises
We will begin our adventure by making some simple plot axes and coastline basemaps. We will do this
in order to introduce the all-important B, J, and R switches and to familiarize ourselves with a few
selected GMT projections. The GMT programs we will utilize are psbasemap and pscoast. Please
consult their manual pages on the GMT web site for reference.
1.4.1
Linear projection
We start by making the basemap frame for a linear x-y plot. We want it to go from 10 to 70 in x, annotating
every 10, and from -3 to 8 in y, annotating every 1. The final plot should be 4 by 3 inches in size. Heres
how we do it:
psbasemap -R10/70/-3/8 -JX4i/3i -B10/1:."My first plot": -P >! plot.ps
You can view the result with ghostview plot.ps.
Exercises
1. Try change the JX values.
2. Try change the B values.
3. Omit the P.
1.4.2
Logarithmic projection
We next will show how to do a basemap for a loglog plot. We will assume that the raw x data range from
3 to 9613 and y ranges from 3.2 1020 to 6.8 1024 . One possibility is
psbasemap -R1/10000/1e20/1e25 -JX9il/6il \
-B2:"Wavelength (m)":/a1pf3:"Power (W)":WS >! plot.ps
(The backslash \ makes UNIX ignore the carriage return that follows and treat the two lines as one long
command).
Exercises
1. Do not append l to the axes lengths.
2. Leave the p modifier out of the B string.
3. Add g3 to each side of the slash in B.
1.4.3
Mercator projection
Despite the problems of extreme horizontal exaggeration at high latitudes, the conformal Mercator projection (JM) remains the stalwart of location maps used by scientists. It is one of several cylindrical
projections offered by GMT; here we will only have time to focus on one such projection. The complete
syntax is simply
JMwidth
To make coastline maps we use pscoast which automatically will access the GMT coastline data base
derived from the GSHHS database2 . In addition to the common switches we may need to use some of
several pscoast -specific options (see Table 1.2).
Option
A
D
G
I
L
N
S
W
Purpose
Exclude small features or those of high hierarchical levels (see Appendix K)
Select data resolution (full, high, intermediate, low, or crude)
Set color of dry areas (default does not paint)
Draw rivers (chose features from one or more hierarchical categories)
Plot map scale (length scale can be km, miles, or nautical miles)
Draw political borders (including US state borders)
Set color for wet areas (default does not paint)
Draw coastlines and set pen thickness
1.4.4
Albers projection
The Albers projection (JB) is an equal-area conical projection; its conformal cousin is the Lambert conic
projection (JL). Their usages are almost identical so we will only use the Albers here. The general syntax
is
JBlon0 /lat0 /lat1 /lat2 /width
where (lon0 , lat0 ) is the map (projection) center and lat1 , lat2 are the two standard parallels where the cone
intersects the Earths surface. We try the following command:
pscoast -R-130/-70/24/52 -JB-100/35/33/45/6i -B10g5:."Conic Projection": \
-N1/2p -N2/0.25p -A500 -G200 -W0.25p -P >! map.ps
2 See
Exercises
1. Change the parameter GRID CROSS SIZE PRIMARY to make grid crosses instead of gridlines.
2. Change R to a rectangular box specification instead of minimum and maximum values.
1.4.5
Orthographic projection
The azimuthal orthographic projection (JG) is one of several projections with similar syntax and behavior;
the one we have chosen mimics viewing the Earth from space at an infinite distance; it is neither conformal
nor equal-area. The syntax for this projection is
JGlon0 /lat0 /width
where (lon0 , lat0 ) is the center of the map (projection). As an example we will try
pscoast -R0/360/-90/90 -JG280/30/6i -Bg30/g15 -Dc -A5000 -G255/255/255 \
-S150/50/150 -P >! map.ps
Exercises
1. Use the rectangular option in R to make a rectangular map showing the US only.
1.4.6
We conclude the survey of map projections with the Eckert IV and VI projections (JK), two of several
projections used for global thematic maps; They are both equal-area projections whose syntax is
JK[f|s]lon0 /width
where f gives Eckert IV (4) and s (Default) gives Eckert VI (6). The lon0 is the central meridian (which
takes precedence over the mid-value implied by the R setting). A simple Eckert VI world map is thus
generated by
pscoast -R0/360/-90/90 -JKs180/9i -B60g30/30g15 -Dc -A5000 -G180/120/60 \
-S100/180/255 -W0.25p >! map.ps
Exercises
1. Center the map on Greenwich.
2. Add a map scale with L.
2. SESSION TWO
2.1
General Information
There are 18 GMT programs that directly create (or add overlays to) plots (Table 2.1); the remaining 45 are
mostly concerned with data processing. This session will focus on the task of plotting lines, symbols, and
text on maps. We will build on the skills we acquired while familiarizing ourselves with the various GMT
map projections as well as how to select a data domain and boundary annotations.
Program
psbasemap
pscoast
pslegend
pswiggle
psxy
psxyz
pshistogram
psrose
grdcontour
pscontour
grdimage
grdvector
grdview
psclip
psimage
psmask
psscale
pstext
Purpose
BASEMAPS
Create an empty basemap frame with optional scale
Plot coastlines, filled continents, rivers, and political borders
Create legend overlay
POINTS AND LINES
Draw spatial time-series along their (x, y)-tracks
Plot symbols, polygons, and lines in 2-D
Plot symbols, polygons, and lines in 3-D
HISTOGRAMS
Plot a rectangular histogram
Plot a polar histogram(sector/rose diagram)
CONTOURS
Contouring of 2-D gridded data sets
Direct contouring or imaging of xyz data by optimal triangulation
SURFACES
Produce color images from 2-D gridded data
Plot vector fields from 2-D gridded data
3-D perspective imaging of 2-D gridded data
UTILITIES
Use polygon files to initiate custom clipping paths
Plot Sun rasterfiles
Create clipping paths or generate overlay to mask
Plot grayscale or colorscale bar
Plot textstrings on maps
Table 2.1: List of all 1-D and 2-D plotting programs in GMT.
Plotting lines and symbols, psxy is one of the most frequently used programs in GMT. In addition to
the common command line switches it has numerous specific options, and expects different file formats
depending on what action has been selected. These circumstances make psxy harder to master than most
GMT tools. Table 2.2 shows a complete list of the options.
Option
A
Ccpt
E[x|X][y|Y][cap][/pen]
Gfill
L
M[flag]
N
S[symbol][size]
Wpen
Purpose
Suppress line interpolation along great circles
Let symbol color be determined from z-values and the cpt file
Draw selected error bars with specified attributes
Set color for symbol or fill for polygons
Explicitly close polygons
Multiple segment input data; headers start with flag
Do Not clip symbols at map borders
Select one of several symbols (See Table 2.3)
Set pen for line or symbol outline
The symbols can either be transparent (using W only, not G) or solid (G, with optional outline using
W). The S option takes the code for the desired symbol and optional size information. If no symbol is
given it is expected to be given in the last column of each record in the input file. The size is optional since
individual sizes for symbols may also be provided by the input data. The main symbols available to us are
shown in Table 2.3.
Option
S-size
Sasize
Sbsize[/base][u]
Scsize
Sdsize
Se
SE
Sgsize
Shsize
Sisize
Sksymbol/size
Slsize/string[%font]
Snsize
Sp
Srsize
Sssize
Stsize
Sv[thick/length/width][nnorm]
SV[thick/length/width][nnorm]
Sw[size
Sxsize
Sysize
Symbol
horizontal dash; size is length of dash
star; size is radius of circumscribing circle
bar; size is bar width, append u if size is in x-units
Bar extends from base [0] to the y-value
circle; size is the diameter
diamond; size is its side
ellipse; direction (CCW from horizontal), major, and minor axes in inches
are read from the input file
ellipse; azimuth (CW from vertical), major, and minor axes in kilometers
are read from the input file
octagon; size is its side
hexagon; size is its side
inverted triangle; size is its side
kustom symbol; size is its side
letter; size is fontsize. Append a letter or text string, and optionally a font
pentagon; size is its side
point; no size needed (1 pixel at current resolution is used)
rect, width and height are read from input file
square, size is its side
triangle; size is its side
vector; direction (CCW from horizontal) and length are read from input data
Optionally, append the thickness of the vector and the width and length of the
arrow-head. If the nnorm is appended, all vectors whose lengths are less than
norm will have their attributes scaled by length/norm
vector, except azimuth (degrees east of north) is expected instead of direction
The angle on the map is calculated based on the chosen map projection
pie wedge; start and stop directions (CCW from horizontal) are read from input data
cross; size is length of crossing lines
vertical dash; size is length of dash
Table 2.3: The symbol option in psxy. Lower case symbols (a, c, d, g, h, i, n, s, t, x) will fit inside a circle
of given diameter. Upper case symbols (A, C, D, G, H, I, N, S, T, X) will have area equal to that of a circle
of given diameter.
Because some symbols require more input data than others, and because the size of symbols as well as
their color can be determined from the input data, the format of data can be confusing. The general format
for the input data is (optional items are in brackets []):
x y [ z ] [ size ] [ x ] [ y ] [ symbol ]
Thus, the only required input columns are the first two which must contain the longitude and latitude
(or x and y). The remaining items apply when one (or more) of the following conditions are met:
1. If you want the color of each symbol to be determined individually, supply a cptfile with the C
option and let the 3rd data column contain the z-values to be used with the cptfile.
2. If you want the size of each symbol to be determined individually, append the size in a separate
column.
3. To draw error bars, use the E option and give one or two additional data columns with the dx and
10
dy values; the form of E determines if one (Ex or Ey) or two (Exy) columns are needed. If
upper case flags X or Y are given then we will instead draw a box-and-whisker symbol and the
x (or y ) must represent 4 columns containing the minimum, the 25 and 75% quartiles, and the
maximum value. The given x (or y) coordinate is taken as the 50% quartile (median).
4. If you draw vectors with Sv (or SV) then size is actually two columns containing the direction (or
azimuth) and length of each vector.
5. If you draw ellipses (Se) then size is actually three columns containing the direction and the major
and minor axes in plot units (with SE we expect azimuth instead and axes lengths in km).
Before we try some examples we need to review two key switches; they specify pen attributes and
symbol or polygon fill. Please consult Chapter 4 in the GMT Technical Reference and Cookbook before
experimenting with the examples below.
2.1.1
Examples
We will start off using the file data in your directory. Using the GMT utility minmax we find the extent of
the data region:
minmax data
which returns
data: N = 7
<1/5>
<1/5>
telling us that the file data has 7 records and gives the minimum and maximum values for the first two
columns. Given our knowledge of how to set up linear projections with R and JX, try the following:
1. Plot the data as transparent circles of size 0.3 inches.
2. Plot the data as solid white circles instead.
3. Plot the data using 0.5 stars, making them red with a thick (width = 1.5p), dashed pen.
To simply plot the data as a line we choose no symbol and specify a pen thickness instead:
psxy data -R -JX -P -B -W0.5p >! plot.ps
2.1.2
Exercises
11
Our final psxy example involves a more complicated scenario in which we want to plot the epicenters
of several earthquakes over the background of a coastline basemap. We want the symbols to have a size
that reflects the magnitude of the earthquakes, and that their color should reflect the depth of the hypocenter. You will find the two files quakes.ngdc and quakes.cpt in your directory. The first few lines in the
quakes.ngdc looks like this:
489
067
0.082
0.136
We will follow conventional color schemes for seismicity and assign red to shallow quakes (depth 0
100 km), green to intermediate quakes (100300 km), and blue to deep earthquakes (depth > 300 km). The
quakes.cpt file establishes the relationship between depth and color:
# color palette for seismicity
#z0 red green blue
z1
red green blue
0
255
0
0
100
255
0
0
100
0
255
0
300
0
255
0
300
0
0 255 1000
0
0 255
Apart from comment lines (starting with #), each record in the cpt file governs the color of a symbol
whose z value falls in the range between z0 and z1 . If the lower and upper red/green/blue triplets differ then
an intermediate color will be linearly interpolated given the z value. Here, we have chosen constant color
intervals.
We may now complete our example using the Mercator projection; we throw in a map scale out of pure
generosity:
pscoast -R130/150/35/50 -JM6i -B5 -P -G200 -Lf134/49/42.5/500 -K >! map.ps
psxy -R -JM -O -Cquakes.cpt quakes.d -Sci -W0.25p >> map.ps
where the i appended to the Sc option ensures that symbols sizes are interpreted to be in inches.
2.1.3
More exercises
2.2
12
In many situations we need to annotate plots or maps with text strings; in GMT this is done using pstext.
Apart from the common switches, there are 7 options that are particularly useful (Table 2.4).
Option
Cdx/dy
Ddx/dy
Gfill
L
N
Spen
W[fill][o[pen]]
Purpose
Spacing between text and the text box (see W)
Offsets the projected location of the strings
Sets the color of the text
Lists the font ids and exits
Deactivates clipping at the borders
Selects outline font and sets pen attributes
Paint the text box; draw the outline if o is appended (also see C)
My Text
Figure 2.1: Relationship between the text box and the extra clearance.
The input data to pstext is expected to contain the following information:
x y size angle fontno justify text
The size argument is the font size in points, the angle is the angle (measured counterclockwise) between
the texts baseline and the horizontal, justify indicates which point on the text-string should correspond to
the given x, y location, and text is the text string or sentence to plot. Figure 2.2 illustrates these concepts
and shows the relevant two-character codes used for justification.
L (Left)
C (Center)
R (Right)
My Text
LM
T (Top)
M (Middle)
B (Bottom)
TR
Figure 2.2: Justification (and corresponding character codes) for text strings.
The text string can be one or several words and may include octal codes for special characters and
escape-sequences used to select subscripts or symbol fonts. The escape sequences that are recognized by
GMT are given in Table 2.5.
Note that these escape sequences (as well as octal codes) can be used anywhere in GMT including
in arguments to the B option. A chart of octal codes can be found in Appendix F in the GMT technical
reference book. For accented European characters you must set CHAR ENCODING to ISOLatin1 in
your .gmtdefaults4 file.
We will demonstrate pstext with the following script:
cat << EOF | pstext -R0/7/0/5 -Jx1i -P -B1g1 -G255/128/0 | ghostview 1
1
30
0
4
BL
Its P@al, not Pal!
1
2
30
0
4
BL
Try @%33%ZapfChancery@%% today
1
3
30
0
4
BL
@D@g@-b@- = 2@pr@G@D@h.
1
4
30
0
4
BL
University of Hawaii at M@!a\225noa
EOF
13
Effect
Turns symbol font on or off
Switches to another font; @%% resets to previous font
Turns superscript on or off
Turns subscript on or off
Turns small caps on or off
Creates one composite character of the next two characters
Prints the @ sign itself
a
A
2.3
Exercises
14
3. SESSION THREE
3.1
GMT comes with several utilities that can create gridded data sets; we will discuss two such programs
later this session. First, we will assume that we already have gridded data sets. In the supplemental GMT
archive there is a program that serves as a data extractor from several public domain global gridded data
sets. Among these data are ETOPO5, crustal ages, gravity and geoid, and DEM for the continental US.
Here, we will use grdraster to extract a GMT-ready grid that we will next use for contouring:
grdraster 1 -R-66/-60/30/35 -Gbermuda.grd -V
We first use the GMT program grdinfo to see whats in this file:
grdinfo bermuda.grd
The file contains bathymetry for the Bermuda region and has depth values from -5475 to -89 meters. We
want to make a contour map of this data; this is a job for grdcontour. As with previous plot commands
we need to set up the map projection with J. Here, however, we do not have to specify the region since
that is by default assumed to be the extent of the grid file. To generate any plot we will in addition need to
supply information about which contours to draw. Unfortunately, grdcontour is a complicated program
with too many options. We put a positive spin on this situation by touting its flexibility. Here are the most
useful options:
Option
Aannot int
Ccont int
Ggap
Llow/high
Nunit
Qcut
Ssmooth
T[+|-][gap/length][:LH]
W[a|c]pen
Zfactor[/offset]
Purpose
Annotation interval
Contour interval
Sets distance between contour annotations
Only draw contours within the low to high range
Append unit to contour annotations
Do not draw contours with fewer than cut points
Resample contours every x inc/smooth increment
Draw tick-marks in downhill direction for innermost closed contours
Add tick spacing and length, and characters to plot at the center of closed contours.
Set contour and annotation pens
[Subtract offset] and multiply data by factor prior to processing
3.1.1
Exercises
3.2
15
Except in the situation above when a gridded file is available, we must convert our data to the right format
readable by GMT before we can make contour plots and color-coded images. We distinguish between two
scenarios:
1. The (x, y, z) data are available on a regular lattice grid.
2. The (x, y, z) data are distributed unevenly in the plane.
The former situation may require a simple reformatting (using xyz2grd), while the latter must be interpolated onto a regular lattice; this process is known as gridding. GMT supports three different approaches
to gridding; here, we will briefly discuss the two most common techniques.
All GMT gridding programs have in common the requirement that the user must specify the grid domain and output filename:
Rxmin/xmax/ymin/ymax
Ixinc[m|c][/yinc[m|c]]
Ggridfile
3.2.1
ri
9r2
wi = 1 + 2i
R
1
<245/254.705>
<20/29.99131>
<-7708/-9>
16
Purpose
Sets search radius. Append k to indicate radius in kilometers [Default is x-units]
Assign this value to unconstrained nodes [Default is NaN]
Sector search, indicate number of sectors [Default is 4]
Read relative weights from the 4th column of input data
3.2.2
As an alternative, we may use a global procedure to grid our data. This approach, implemented in the
program surface, represents an improvement over standard minimum curvature algorithms by allowing
users to introduce some tension into the surface. Physically, we are trying to force a thin elastic plate
to go through all our data points; the values of this surface at the grid points become the gridded data.
Mathematically, we want to find the function z(x, y) that satisfies the following constraints:
z(xk , yk ) = zk ,
(1 t)4 z t2 z = 0
where t is the tension, 0 t 1. Basically, as t 0 we obtain the minimum curvature solution, while
as t we go towards a harmonic solution (which is linear in cross-section). The theory behind all this
is quite involved and we do not have the time to explain it all here, please see Smith and Wessel [1990] for
details. Some of the most important switches for this program are indicated in Table 3.31 .
Option
Aaspect
Climit
Ttension
Purpose
Sets aspect ratio for anisotropic grids.
Sets convergence limit. Default is 1/1000 of data range.
Sets the tension [Default is 0]
3.2.3
Preprocessing
The surface program assumes that the data have been preprocessed to eliminate aliasing, hence we must
ensure that this step is completed prior to gridding. GMT comes with three preprocessors, called blockmean, blockmedian, and blockmode. The first averages values inside the grid-spacing boxes, the
second returns median values, wile the latter returns modal values. As a rule of thumb, we use means for
most smooth data (such as potential fields) and medians (or modes) for rough, non-Gaussian data (such as
topography). In addition to the required R and I switches, these preprocessors all take the same options
(listed in Table 3.4).
With respect to our ship data we preprocess it using the median method:
1 The A option is necessary for geographic grids since x inc shrinks with latitude. Rule of thumb: set aspect = cosine of the
average latitude.
17
Purpose
Choose pixel registration [Default is gridline]
Append i or o to read or write weights in the 4th column
3.3
Exercises
18
4. SESSION FOUR
In our final session we will concentrate on color images and perspective views of gridded data sets. Before
we start that discussion we need to cover two important aspects of plotting that must be understood. These
are
1. Color tables and pseudo-colors in GMT.
2. Artificial illumination and how it affects colors.
4.1
Cpt files
The cpt file is discussed in detail in the GMT Technical Reference and Cookbook, Chapter 4. Please review
the format before experimenting further.
Cpt files can be created in any number of ways. GMT provides two mechanisms:
1. Create simple, linear color tables given a master color table (several are built-in) and the desired
z-values at color boundaries (makecpt)
2. Create color tables based on a master cpt color table and the histogram-equalized distribution of
z-values in a gridded data file (grd2cpt)
One can also make these files manually or with awk or other tools. Here we will limit our discussion to
makecpt. Its main argument is the name of the master color table (a list is shown if you run the program
with no arguments) and the equidistant z-values to go with it. The main options are given below.
Option
C
I
V
Z
Purpose
Set the name of the master cpt file to use
Reverse the sense of the color progression
Run in verbose mode
Make a continuous rather than discrete table
Purpose
The required cpt file
Sets the position of the center/left and dimensions of scale bar.
Append h to get horizontal bar and give center/top instead
Add illumination effects
-K >! bar.ps
-B:discrete: -O -K >> bar.ps
-B:continuous: -O -K >> bar.ps
-B:discrete: -I0.5 -O -K >> bar.ps
-B:continuous: -I0.5 -O >> bar.ps
4.1.1
19
Exercises
1. Redo the makecpt exercise using the master table hot and redo the bar plot.
2. Try specifying B10g5.
4.2
GMT allows for artificial illumination and shading. What this means is that we imagine an artificial sun
placed at infinity in some azimuth and elevation position illuminating our surface. The parts of the surface
that slope toward the sun should brighten while those sides facing away should become darker; no shadows
are cast as a result of topographic undulations.
While it is clear that the actual slopes of the surface and the orientation of the sun enter into these
calculations, there is clearly an arbitrary element when the surface is not topographic relief but some other
quantity. For instance, what does the slope toward the sun mean if we are plotting a grid of heat flow
anomalies? While there are many ways to accomplish what we want, GMT offers a relatively simple way:
We may calculate the gradient of the surface in the direction of the sun and normalize these values to fall in
the 1 range; +1 means maximum sun exposure and -1 means complete shade. Although we will not show
it here, it should be added that GMT treats the intensities as a separate data set. Thus, while these values
are often derived from the relief surface we want to image they could be separately observed quantities
such as back-scatter information.
Colors in GMT are specified in the RGB system used for computer screens; it mixes red, green, and
blue light to achieve other colors. The RGB system is a Cartesian coordinate system and produces a color
cube. For reasons better explained in Appendix I in the Reference book it is difficult to darken and brighten
a color based on its RGB values and an alternative coordinate system is used instead; here we use the HSV
system. If you hold the color cube so that the black and white corners are along a vertical axis, then the
other 6 corners project onto the horizontal plane to form a hexagon; the corners of this hexagon are the
primary colors Red, Yellow, Green, Cyan, Blue, and Magenta. The CMY colors are the complimentary
colors and are used when paints are mixed to produce a new color (this is how printers operate; they also
add pure black (K) to avoid making gray from CMY). In this coordinate system the angle 0360 is the hue
(H); the Saturation and Value are harder to explain. Suffice it to say here that we intend to darken any pure
color (on the cube facets) by keeping H fixed and adding black and brighten it by adding white; for interior
points in the cube we will add or remove gray. This operation is efficiently done in the HSV coordinate
system; hence all GMT shading operations involve translating from RGB to HSV, do the illumination
effect, and transform back the modified RGB values.
4.3
Color images
Once a cpt file has been made it is relatively straightforward to generate a color image of a gridded data.
Here, we will extract a subset of the global 30 DEM (data id 9) from USGS:
grdraster 9 -R-108/-103/35/40 -Gus.grd
Using grdinfo we find that the data ranges from 1000m to 4300m so we make a cpt file accordingly:
makecpt -Crainbow -T1000/5000/500 -Z >! topo.cpt
Color images are made with grdimage which takes the usual common command options (by default
the R is taken from the data set) and a cptfile; the main other options are
We want to make a plain color map with a color bar superimposed above the plot. We try
grdimage us.grd -JM6i -P -B2 -Ctopo.cpt -V -K >! topo.ps
psscale -D3i/8.5i/5i/0.25ih -Ctopo.cpt -I0.4 -B/:m: -O >> topo.ps
20
Purpose
Sets the desired resolution of the image [Default is data resolution]
Use artificial illumination using intensities from intensfile
Force grayshade using the (television) YIQ conversion
Purpose
Azimuthal direction for gradients
Indicates that this is a geographic grid
Normalize gradients by norm/offset [= 1/0 by default].
Insert t to normalize by the tan1 transformation.
Insert e to normalize by the cumulative Laplace distribution.
Raw
slopes
4
0
10
tan1
transformed
5
1
0
0.5
0.0
0.5
0
4
0.5
0.0
0.5
4.3.1
Exercises
4.4
21
Perspective views
Our final undertaking in this tutorial is to examine three-dimensional perspective views. GMT is currently
limited to vantage points at infinity; thus we are unable to do fly-bys through canyons etc. The GMT
module that produces perspective views of gridded data files is grdview. It can make two kinds of plots:
1. Mesh or wire-frame plot (with or without superimposed contours)
2. Color-coded surface (with optional shading, contours, or draping).
Regardless of plot type, some arguments must be specified; these are
1. relief file; a gridded data set of the surface.
2. J for the desired map projection.
3. JZheight for the vertical scaling.
4. Eazimuth/elevation for vantage point.
In addition, some options may be required:
Option
Ccptfile
Gdrape file
Iintens file
Qm
Qs[m]
Qidpi[g]
Wpen
Purpose
The cptfile is required for color -coded surfaces and for contoured mesh plots
Assign colors using drape file instead of relief file
File with illumination intensities
Selects mesh plot
Surface plot using polygons; append m to show mesh. This option allows for W
Image by scan-line conversion. Specify dpi; append g to force gray-shade image. B is disabled.
Draw contours on top of surface (except with Qi)
4.4.1
Mesh-plot
Mesh plots work best on smaller data sets. We again use the small subset of the ETOPO5 data over
Bermuda and make a quick-and-dirty cpt file:
grd2cpt bermuda.grd -Cocean >! bermuda.cpt
A simple mesh plot can therefore be obtained with
grdview bermuda.grd -JM5i -P -JZ2i -E135/30 -B2 -Cbermuda.cpt >! map.ps
Exercises
1. Select another vantage point and vertical height.
4.4.2
Color-coded view
We will make a perspective, color-coded view of the US Rockies from the southeast. This is done using
grdview us.grd -JM6i -E135/35 -Qi50 -Ius_i.grd -Ctopo.cpt -V -B2 \
-JZ0.5i >! view.ps
This plot is pretty crude since we selected 50 dpi but it is fast to render and allows us to try alternate values
for vantage point and scaling. When we settle on the final values we select the appropriate dpi for the final
output device and let it rip.
Exercises
1. Choose another vantage point and scaling.
2. Redo grdgradient with another illumination direction and replot.
3. Select a higher dpi, e.g., 200.
22
CHAPTER 5. REFERENCES
23
5. References
1. Smith, W.H.F., and P. Wessel, Gridding with continous curvature splines in tension, Geophysics, 55,
293305, 1990.
2. Wessel, P., and W.H.F. Smith, Free software helps map and display data, EOS Trans. AGU, 72, 441,
1991.
3. Wessel, P., and W.H.F. Smith, New version of the Generic Mapping Tools released, EOS Trans.
AGU, 76, 329, 1995.
4. Wessel, P., and W.H.F. Smith, A global, self-consistent, hierarchical, high-resolution shoreline database,
J. Geophys. Res., 101, 87418743, 1996.
5. Wessel, P., and W.H.F. Smith, New, improved version of the Generic Mapping Tools released, EOS
Trans. AGU, 79, 579, 1998.
6. Wessel, P., and W.H.F. Smith, The Generic Mapping Tools Technical Reference and Cookbook,
Version 4.0, pp. 132, 2004.
Index
Symbols
HSV system . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 19
.gmtdefaults4 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 3
I
A
Illumination, artificial . . . . . . . . . . . . . . . . . . . . . . . . 20
Albers projection JB . . . . . . . . . . . . . . . . . . . . . . . . . 6 Input files . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 2
Artifical illumination . . . . . . . . . . . . . . . . . . . . . . . . . 20
J
awk . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 11, 18
Justification of text . . . . . . . . . . . . . . . . . . . . . . . . . . . 12
B
L
blockmean . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 16
blockmedian. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .16 Linear projection JX . . . . . . . . . . . . . . . . . . . . . . . . . 5
blockmode . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 16 Logarithmic projection . . . . . . . . . . . . . . . . . . . . . . . . 5
M
makecpt . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 18, 19
Mercator projection JM . . . . . . . . . . . . . . . . . . . . . . 6
Mesh plots . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 21
Minimum curcature . . . . . . . . . . . . . . . . . . . . . . . . . . 16
minmax . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 10, 15
C
Color
images . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 19
tables . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 18
Composite characters . . . . . . . . . . . . . . . . . . . . . . . . . 12
Connected symbols . . . . . . . . . . . . . . . . . . . . . . . . . . 10
cshell . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 2
N
nearest neighbor . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 15
nearneighbor . . . . . . . . . . . . . . . . . . . . . . . . . . 1517
E
Eckert IV and VI projection JK . . . . . . . . . . . . . . . 7
Ellipses . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 10
Error bars . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 10
Escape sequences . . . . . . . . . . . . . . . . . . . . . . . . . . . . 12
Examples . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 5, 10
Exercises . . . . . . . . . . . 57, 10, 1314, 1617, 1922
O
Orthographic projection JG . . . . . . . . . . . . . . . . . . . 7
G
ghostscript . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .1
ghostview . . . . . . . . . . . . . . . . . . . . . . . . . . . . 1, 2, 5, 13
GMT
environment . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 2
history . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 1
input . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 2
installation . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 1
philosophy . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 1
popularity . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 1
requirements . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 1
gmtdefaults . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 6
grd2cpt . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 18
grdcontour . . . . . . . . . . . . . . . . . . . . . . . . . . . 8, 14, 17
grdgradient . . . . . . . . . . . . . . . . . . . . . . . . . . . . 20, 22
grdimage . . . . . . . . . . . . . . . . . . . . . . . . . . . . 8, 19, 20
grdinfo . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 14, 19
grdraster . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 2, 14
grdvector . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 8
grdview . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 8, 21
H
here document . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 13
P
Perspective views . . . . . . . . . . . . . . . . . . . . . . . . . . . . 21
Piping . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 4
Plot
symbols . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 9
Projection
Albers . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 6
Eckert IV and VI . . . . . . . . . . . . . . . . . . . . . . . . . 7
linear . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 5
logarithmic . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 5
Mercator . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 6
orthographic . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 7
psbasemap . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 5, 8
psclip . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 8
pscoast . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 5, 6, 8
pscontour . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 8
pshistogram . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 8
psimage . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 8
pslegend . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 8
psmask . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 8, 17
psrose . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 8
psscale . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 8, 18
pstext input format . . . . . . . . . . . . . . . . . . . . . . . . . . 12
pstext . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 8, 12
pswiggle . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 8
24
INDEX
25