Crystal Structure Analysis
Crystal Structure Analysis
Prepared by
Bashdar Akbar San Ahmad mohamad Fariq Tofiq
Jwana Kamal Abdulfatah
Supervised by
Dr. Omed Gh. Abdullah
2008 – 2009
Contents
2.1 Introduction . . . . . . . . . . . . . . . . . . . . . 16
2.2 The Bragg diffraction law . . . . . . . . . . . . . . . . . . . . . 16
2.3 The reciprocal lattice . . . . . . . . . . . . . . . . . . . . . 18
2.4 Ewald Construction . . . . . . . . . . . . . . . . . . . . . 21
2.5 Experiment X-ray diffraction method . . . . . . . . . . . . . . . . . . . . . 22
2.5.1 The Laue method . . . . . . . . . . . . . . . . . . . . . 22
2.5.2 Rotating-crystal method . . . . . . . . . . . . . . . . . . . . . 25
2.5.3 The powder method . . . . . . . . . . . . . . . . . . . . . 28
2.6 Geometrical structure factor . . . . . . . . . . . . . . . . . . . . . 31
2.7 Atomic Form Factor . . . . . . . . . . . . . . . . . . . . . 33
2.8 Structure-Factor Calculations . . . . . . . . . . . . . . . . . . . . . 34
2
Chapter Three: Crystal Structure Determinations
3.1 Introduction . . . . . . . . . . . . . . . . . . . . . 37
3.2 Indexing patterns of cubic crystals . . . . . . . . . . . . . . . . . . . . . 37
3.3 Crystal Structure of BaO . . . . . . . . . . . . . . . . . . . . . 40
3.4 Crystal Structure of NaO2 . . . . . . . . . . . . . . . . . . . . . 42
3.5 Crystal Structure of MgS . . . . . . . . . . . . . . . . . . . . . 43
3.6 Crystal Structure of ZnZr . . . . . . . . . . . . . . . . . . . . . 45
3.7 Crystal Structure of AgCd . . . . . . . . . . . . . . . . . . . . . 46
3.8 Crystal Structure of CuSc . . . . . . . . . . . . . . . . . . . . . 48
3.9 Crystal Structure of LaTe . . . . . . . . . . . . . . . . . . . . . 49
3.10 Crystal Structure of ErTe . . . . . . . . . . . . . . . . . . . . . 51
3-11 Conclusions . . . . . . . . . . . . . . . . . . . . . 52
References . . . . . . . . . . . . . . . . . . . . . 53
3
Abstract
4
Chapter One
Crystal Structure
1.1 Introduction:
The study of solid state physics began in the early years of twentieth
century following the discovery of x-ray diffraction by crystals and the
publication of a series of simple calculations and successful predictions of the
properties of crystals. Solids can be classified in to three categories according
to its structure; amorphous, crystal, and polycrystal. The first type an
amorphous solid is a solid in which there is no long-range order of the
positions of the atoms. (Solids in which there is long-range atomic order are
called crystalline solids or amorphous). Most classes of solid materials can be
found or prepared in an amorphous form. For instance, common window
glass is an amorphous ceramic, many polymers (such as polystyrene) are
amorphous, and even foods such as cotton candy are amorphous solids.
In materials science, a crystal is a solid substance in which the atoms,
molecules, or ions are arranged in an orderly repeating pattern extending in all
three spatial dimensions; while the polycrystalline materials are solids that are
composed of many crystallites of varying size and orientation. The variation
in direction can be random (called random texture) or directed, possibly due
to growth and processing conditions. Fiber texture is an example of the latter.
Almost all common metals, and many ceramics are polycrystalline. The
crystallites are often referred to as grains; however, powder grains are a
different context. Powder grains can themselves be composed of smaller
polycrystalline grains.
Polycrystalline is the structure of a solid material that, when cooled,
form crystallite grains at different points within it. Where these crystallite
grains meet is known as grain boundaries.
5
1.2 Crystal structure:
In mineralogy and crystallography, a crystal structure is a unique
arrangement of atoms in a crystal. A crystal structure is composed of a motif,
a set of atoms arranged in a particular way, and a lattice. Motifs are located
upon the points of a lattice, which is an array of points repeating periodically
in three dimensions. The points can be thought of as forming identical tiny
boxes, called unit cells, that fill the space of the lattice. The lengths of the
edges of a unit cell and the angles between them are called the lattice
parameters. The symmetry properties of the crystal are embodied in its space
group. A crystal's structure and symmetry play a role in determining many of
its properties, such as cleavage, electronic band structure, and optical
properties.
6
independent atoms have to be specified. The coordinates of each symmetry
independent atoms are given in fraction of the cell length. For each atom, the
number of free variables depends on the Wyckoff positions of the space group
and may vary from three (general position) to zero (special position).
7
Fiig.(1.1): The
T unite cell
c of a crrystal struccture.
1.5 Classifica
C ation of crrystals byy symmetrry:
The definning propperty of a crystal
c is its
i inherennt symmettry, by wh
hich we
meaan that unnder certtain operaations thee crystal remains unchangeed. For
exam
mple, rotaating the crrystal 1800 degrees about
a a ceertain axis may resu
ult in an
atom
mic configguration which
w is identical to the orriginal configuratio
on. The
crysstal is thenn said to have
h a twofold rotaational sym
mmetry abbout this axis.
a In
addiition to rootational syymmetries like thiss, a crystal may havve symmeetries in
the form
f of mirror
m plannes and traanslational symmetrries, and aalso the so
o-called
com
mpound symmetrie
s es which are a combinattion of translatio
on and
rotattion/mirroor symmettries. A fuull classificcation of a crystal iis achieved
d when
all of
o these inhherent sym
mmetries of
o the crysstal are ideentified.
1.6 Crystal
C syystem:
The crysstal system
ms are a grrouping of
o crystal structures
s according
g to the
axiaal system used
u to describe thheir latticee. Each crrystal systtem consissts of a
set of
o three axes
a in a particularr geometrrical arranngement. There aree seven
nd most symmetricc, the cub
uniqque crystaal systemss. The simplest an bic (or
isom
metric) syystem, hass the sym
mmetry off a cube,, that is, it exhibiits four
threeefold rotational axees orientedd at 109.5 degrees (tthe tetraheedral anglle) with
resppect to eacch other. These
T threeefold axess lie alongg the bodyy diagonalss of the
cubee. This definition
d of a cuubic is correct,
c a
although m
many tex
xtbooks
8
incorrectly state that a cube is defined by three mutually perpendicular axes of
equal length – if this were true there would be far more than 14 Bravais
lattices. The other six systems, in order of decreasing symmetry, are
hexagonal, tetragonal, rhombohedral (also known as trigonal), orthorhombic,
monoclinic and triclinic. Some crystallographers consider the hexagonal
crystal system not to be its own crystal system, but instead a part of the
trigonal crystal system. The crystal system and Bravais lattice of a crystal
describe the (purely) translational symmetry of the crystal.
9
consstants difffer, strainss are introdduced into
o the layerr, which pprevents ep
pitaxial
grow
wth of thiccker layerss without defects.
Fig.(1.2): Bravais
F B laattices in two dimen nsion: (1)) oblique, (2) rectangular,
(3)) centeredd rectanguular, (4) heexagonal, and (5) sqquare.
10
crystal system only. They represent the maximum symmetry a structure with
the translational symmetry concerned can have.
The Bravais lattices were studied by Moritz Ludwig Frankenheim (1801-
1869), in 1842, who found that there were 15 Bravais lattices in three
dimensions; this was corrected to 14 by A. Bravais in 1848.
11
Th
he 7 Crystal systems
s The 14 Bravvais Lattices:
triiclinic
simple base-centered
moonoclinic
ortthorhombic
hexagonal
rhombohedral
simple body-cen
ntered
tettragonal
simple body-cen
ntered face-centered
cubic
12
There are seven crystal systems:
1. Triclinic, all cases not satisfying the requirements of any other system.
There is no necessary symmetry other than translational symmetry,
although inversion is possible.
2. Monoclinic, requires either 1 twofold axis of rotation or 1 mirror plane.
3. Orthorhombic, requires either 3 twofold axes of rotation or 1 twofold axis
of rotation and two mirror planes.
4. Tetragonal, requires 1 fourfold axis of rotation.
5. Rhombohedral, also called trigonal, requires 1 threefold axis of rotation.
6. Hexagonal, requires 1 six fold axis of rotation.
7. Cubic or Isometric, requires 4 threefold axes of rotation.
Triclinic 2 1 2
Monoclinic 3 2 13
Orthorhombic 3 4 59
Tetragonal 7 2 68
Rhombohedral 5 1 25
Hexagonal 7 1 27
Cubic 5 3 36
Total 32 14 230
13
1.7 Point and space groups:
The crystallographic point group or crystal class is the mathematical
group comprising the symmetry operations that leave at least one point
unmoved and that leave the appearance of the crystal structure unchanged.
These symmetry operations can include reflection, which reflects the structure
across a reflection plane, rotation, which rotates the structure a specified
portion of a circle about a rotation axis, inversion which changes the sign of
the coordinate of each point with respect to a center of symmetry or inversion
point and improper rotation, which consists of a rotation about an axis
followed by an inversion. Rotation axes (proper and improper), reflection
planes, and centers of symmetry are collectively called symmetry elements.
There are 32 possible crystal classes. Each one can be classified into one of
the seven crystal systems.
The space group of the crystal structure is composed of the translational
symmetry operations in addition to the operations of the point group. These
include pure translations which move a point along a vector, screw axes,
which rotate a point around an axis while translating parallel to the axis, and
glide planes, which reflect a point through a plane while translating it parallel
to the plane. There are 230 distinct space groups.
14
There are also several related notations. [hkl], with square instead of
round brackets, denotes a direction in the basis of the direct lattice vectors
instead of the reciprocal lattice. The notation {hkl} denotes all planes that are
equivalent to (hkl) by the symmetry of the crystal. Similarly, the notation
denotes all directions that are equivalent to [hkl] by symmetry.
Miller indices were introduced in 1839 by the British mineralogist
William Hallows Miller. The method was also historically known as the
Millerian system, and the indices as Millerian, although this is now rare.
Some of important planes in a cubic crystal structure are shown in Figure
(1.4), while Figure (1.5) shows different direction in crystal structure.
15
The precise meaning of this notation depends upon a choice of lattice
vectors for the crystal, as described below. Usually, three primitive lattice
vectors are used. However, for cubic crystal systems, the cubic lattice vectors
are used even when they are not primitive (e.g., as in body-centered and face-
centered crystals). Figure (1.6) shows plane of (111) and (221) for non cubic
crystal.
There are two equivalent ways to define the meaning of the Miller
indices: via a point in the reciprocal lattice, or as the inverse intercepts along
the lattice vectors. Both definitions are given below. In either case, one needs
to choose the three lattice vectors a1, a2, and a3 as described above. Given
these, the three primitive reciprocal lattice vectors are also determined
(denoted b1, b2, and b3).
Then, given the three Miller indices h,k,l , (hkl) denotes planes
orthogonal to:
That is, (hkl) simply indicates a normal to the planes in the basis of the
primitive reciprocal lattice vectors. Because the coordinates are integers, this
normal is itself always a reciprocal lattice vector. The requirement of lowest
terms means that it is the shortest reciprocal lattice vector in the given
direction.
16
Equivalently, (hkl) denotes a plane that intercepts the three points
, , and , or some multiple thereof. That is, the Miller indices are
proportional to the inverses of the intercepts of the plane, in the basis of the
lattice vectors. If one of the indices is zero, it means that the planes do not
intersect that axis (the intercept is "at infinity").
The related notation [hkl] denotes the direction:
That is, it uses the direct lattice basis instead of the reciprocal lattice.
Note that [hkl] is not generally normal to the (hkl) planes, except in a cubic
lattice as described below.
For the special case of simple cubic crystals, the lattice vectors are
orthogonal and of equal length; similarly for the reciprocal lattice. So, in this
common case, the Miller indices (hkl) and [hkl] both simply denote normals
directions in Cartesian coordinates.
For face-centered cubic and body-centered cubic lattices, the primitive
lattice vectors are not orthogonal. However, in these cases the Miller indices
are conventionally defined relative to the lattice vectors of the cubic super cell
and hence are again simply the Cartesian directions.
18
a plane (ABC) where the Miller "indices" a, b, and c (defined as above) are
not necessarily integers.
If a, b, and c have rational ratios, then the same family of planes can be
written in terms of integer indices (hkl) by scaling a, b, and c appropriately:
divide by the largest of the three numbers, and then multiply by the least
common denominator. Thus, integer Miller indices implicitly include indices
with all rational ratios.
19
Chapter Two
X-ray diffraction Analysis
2.1 Introduction:
After our preliminary survey of the geometry of crystals, we can now
proceed to discuss the phenomenon of x-ray diffraction, which is an
interaction of the X-ray with material. Historically, this is exactly the way this
field of science developed. For many years, mineralogists and
crystallographers had accumulated knowledge about crystals, chiefly by
measurement of interfacial angles, chemical analysis, and determination of
physical properties. There was little knowledge of interior structure, however,
although some very shrewd guesses had been made, namely, that crystal;
were built up by periodic repetition of some unit, probably an atom or
molecule, and that these units were situated some 1 or 2 apart. On the
other hand, there were indications, but only indications, that x-rays might be
electromagnetic waves about 1 or 2 in wavelength. In addition, the
phenomenon of diffraction was well understood, and it was known that
diffraction, as of visible light by a ruled grating, occurred whenever wave
motion encountered a set of regularly spaced scattering objects, provided that
the wavelength of the wave motion was of the same order of magnitude as the
repeat distance between the scattering centers.
20
Bragg, were awarded the Nobel Prize in physics in 1915 for their work in
determining crystal structures beginning with NaCl, ZnS, and diamond.
When X-rays hit an atom, they make the electronic cloud move as does
any electromagnetic wave. The movement of these charges re-radiates waves
with the same frequency see Figure (2.1) this phenomenon is known as the
Raleigh scattering (or elastic scattering). The scattered waves can themselves
be scattered but this secondary scattering is assumed to be negligible. A
similar process occurs upon scattering neutron waves from the nuclei or by a
coherent spin interaction with an unpaired electron. These re-emitted wave
fields interfere with each other either constructively or destructively
(overlapping waves either add together to produce stronger peaks or subtract
from each other to some degree), producing a diffraction pattern on a detector
or film [see Figure (2.2)]. The resulting wave interference pattern is the basis
of diffraction analysis. Both neutron and X-ray wavelengths are comparable
with inter-atomic distances (~150 pm) and thus are an excellent probe for this
length scale.
Where
• n is an integer determined by the order given,
• λ is the wavelength of x-rays, and moving electrons, protons and
neutrons,
• d is the spacing between the planes in the atomic lattice, and
• θ is the angle between the incident ray and the scattering planes.
21
Fig.(2-2): According to the 2θ deviation, the phase shift causes constructive
(left figure) or destructive (right figure) interferences.
reciprocal primitive vectors. The simple cubic Bravais lattice, with cubic
primitive cell of side a, has for its reciprocal a simple cubic lattice with a
cubic primitive cell of side ( in the crystallographer's definition). The
cubic lattice is therefore said to be dual, having its reciprocal lattice being
identical (up to a numerical factor).
The reciprocal lattice to a BCC lattice is the FCC lattice. It can be easily
proven that only the Bravais lattices which have 90 degrees between ( )
vectors.
It is interesting to consider this vector and its components in some detail,
in view of its numerous applications in crystallography.
Let us first rewrite G as
G= ha ٭+ kb ٭+ lc٭ (2.1)
22
Where
The reciprocal lattice
a( = ٭b × c)/V (2.2)
b(= ٭c × a)/V (2.3)
c( = ٭a × b)/V (2.4)
and V is the volume of the unit cell.
Let us now allow hkl to take on any integer value that is we shall not
restrict them to relatively prime integers. The vector G now becomes a linear
combination of the basis vectors a٭, b٭, and c٭, the coefficients of this
combination being any integers. Mathematically, this means that G is a lattice
vector, these two lattices are different and its basis vector a, b, and c has
dimensions of length, while G and its basis vectors a٭, b٭, and c ٭have
dimensions length−1. For this reason, as well as others which will become
clear later, we call the set of all the points with position vectors.
r = ua + vb + wc (2.5)
Where uvw are any integers, the direct lattice, and the set of all the points
with position vectors
G = ha ٭+ kb ٭+ lc٭ (2.6)
Where hkl are any integers, the reciprocal lattice.
We shall now proceed to inspect the relationships between the bases of
the direct and reciprocal lattices. It is evident from that a ٭is perpendicular to
b and to c, b ٭is perpendicular to c and to a, and c ٭is perpendicular to a and
to b. We therefore have
a · ٭b = a · ٭c = b ·٭c = b ·٭a = c ·٭a = c ·٭b = 0 (2.7)
We further have
a · a =٭a ·(b × c)/V= V/V= 1 (2.8)
and similarly for the scalar products involving b and c. That is:
a · a = ٭b · b = ٭c · c = ٭1 (2.9)
Indicates further that: a٭. (b×٭c), b٭. (c×٭a )٭and c٭. (a×٭b)٭.
If we combine this result with, we obtain
23
a = (b ×٭c)٭/V٭ (2.10)
b = (c ×٭a)٭/V٭ (2.11)
c = (a ×٭b)٭/V٭ (2.12)
Where
V =٭a( ·٭b ×٭c = )٭b( ·٭c ×٭a = )٭c( ·٭a ×٭b )٭is the volume of the unit
cell of the reciprocal lattice, based on the vectors a٭, b ٭and c٭.
Note further that also
V =٭a( ·٭b ×٭c( = )٭b × c) · (b ×٭c)٭/V
= (b · b)٭. (c · c )٭− (b · c)٭. (c · b)٭V
=1/V (2.13)
That is, the volumes of the direct-lattice and reciprocal-lattice unit cells
also turn out to be mutually reciprocal. Here use has been made of the
standard vector-algebraic expression for a scalar product of two vector
products.
Let us now find an expression for V in terms of the unit-cell parameters a,
b, c, α, β, γ. A straightforward approach to the calculation of the volume of a
parallelepiped in terms of its edges and angles is rather cumbersome, and we
shall follow the method of Buerger (1941) which is far simpler. If we refer the
basis vectors a, b, and c to a Cartesian system, say
a = iax + jay + kaz (2.14)
b = ibx + jby + kbz (2.15)
c = icx + jcy + kcz (2.16)
24
on thhe surfacee of the spphere wheere S0 (thee incident beam) exits the sph
here, as
show
wn in Figuure (2.3).
Fiig.(2.3): Ewald
E Con
nstruction..
A highly suggestive
s e geometriical descriiption of the
t conditiions for diirection
was put forw
ward by Ew
wald (19113), and iss employeed very exxtensively
y in the
crysstallographhic literatuure, albeiit in seveeral dietinng represeentations. Let us
resend the maaximum vaalue of |G
G|.
|G| =1dhkkl=2λsin θ (2.17)
(
A sincee the maxim
And mum valuue of sin θ is 1, we must
m have |G|max =2λ.
=
2.5 Experime
E ent X-rayy diffractioon metho
od:
A large raange of laaboratory equipmen
nt is availlable for x-ray difffraction
and spectroscopy, and the Internationaal Union of Crysstallograph
hy has
publlished a useful,
u whhich show
ws what ap
pparatus and
a suppliies are av
vailable
b Azaroff and Donahue
and where too find theem. A laaboratory manual by
desccribes twenty-one exxperimentts in x-ray
y crystalloography. T
This sectio
on deals
withh some expperimentaal methodss to find crrystal structure by xx-ray diffraaction.
25
2.5.1 The Laue method:
Laue photographs are the easiest kind of diffraction pattern to make and
require only the simplest kind of apparatus. White radiation is necessary, and
the best source is a tube with a heavy-metal target, such as tungsten, since the
intensity of the continuous spectrum is proportional to the atomic number
of the target metal. Good patterns can also be obtained with radiation from
other metals, such as molybdenum or copper.
The specimen used in the Laue method is a single crystal. This may mean
an isolated single crystal or one particular crystal grain, not too small, in a
poly-crystalline aggregate. The only restriction on the size of a crystal in a
polycrystalline mass is that it must be no smaller than the incident x-ray
beam, if the pattern obtained is to correspond to that crystal alone.
Unlike the other data collection methods, the crystal is kept stationary
during Laue data collection. Instead, reflections are made to intersect the
Ewald sphere by changing the wavelength. As the wavelength changes the
radius of the Ewald sphere changes as well. Changing the wavelength
continuously has been carried out, but normally the crystals are exposed to
"white radiation". This means that the synchrotron radiation is not
monochromatic ed so that the full wavelength band path illuminates the
crystal. Filters to attenuate long-wavelength radiation may be used to remove
X-rays that are not useful but do heat up the crystal and cause radiation
damage. Figure (2.4) shows the Laue diffraction geometry as a Ewald sphere
representation.
26
Fig.(2.4): In a Laue experiment, X-rays of all wavelengths in a certain
wavelength range (Lambda-min to Lambda-max) are present.
27
The diffracted beams form arrays of spots that lie on curves on the film.
The Bragg angle is fixed for every set of planes in the crystal. Each set of
planes picks out and diffracts the particular wavelength from the white
radiation that satisfies the Bragg law for the values of d involved. Each curve
therefore corresponds to a different wavelength. The spots lying on any one
curve are reflections from planes belonging to one zone. Laue reflections from
planes of the same zone all lie on the surface of an imaginary cone whose axis
is the zone axis.
There are two practical variants of the Laue method, the back-reflection
and the transmission Laue method.
1- Back-reflection Laue:
In the back-reflection method, the film is placed between the X-ray
source and the crystal. The beams which are diffracted in a backward
direction are recorded. One side of the cone of Laue reflections is defined by
the transmitted beam. The film intersects the cone, with the diffraction spots
generally lying on an hyperbola, as shown in Figure (2.5).
2- Transmission Laue:
In the transmission Laue method, the film is placed behind the crystal to
record beams which are transmitted through the crystal. One side of the cone
of Laue reflections is defined by the transmitted beam. The film intersects the
28
cone, with the diffraction spots generally lying on an ellipse, as illustrated in
Figure (2.6).
Figg.(2.11): X-ray
X crysttallographhy film.
a) Photograp
P phy Technique:
P phic film is affecteed by x-rays in muuch the ssame way
Photograp y as by
visibble light. However,, the emuulsion on ordinary film
f is tooo thin to absorb
mucch of the inncident x--radiation,, and only
y absorbedd x-rays caan be effecctive in
blacckening thhe film. Foor this reaason, x-raay films are
a made w
with ratheer thick
layeers of emuulsion on both sidees in ordeer to incrrease the total abso
orption.
(Divvision of the total emulsionn thickness into tw
wo layerss permits easier
33
penetration of the film-processing solutions.) The grain size is also made
large for the same purpose: this has the unfortunate consequence that x-ray
films are grainy, do not resolve fine detail, and cannot stand much
enlargement.
Because the mass absorption coefficient of any substance varies with
wavelength, it follows that film sensitivity, i.e., the amount of blackening
caused by x-ray beams of the same intensity, depends on their wavelength.
This should be borne in mind whenever white radiation is recorded
photographically; for one thing, this sensitivity variation alters the effective
shape of the continuous spectrum.
b) Diffractometer technique:
The x-ray spectrometer can also be used as a tool in diffraction analysis.
This instrument is known as a diffractometer when it is used with x-rays of
know wavelength to determine the unknown spacing of crystal planes, and as
a spectrometer in the reverse case, when crystal planes of known spacing are
used to determine unknown wavelengths. The diffractometer is always used
with monochromatic radiation and measurements may be’ made oh either
single crystals or poll crystal-line specimens; in the latter case, it functions
much like a Debye-Scherrer camera in that the counter intercepts and
measures only a short arc of any one cone of diffracted rays.
34
entire primitive cell is the sum of the individual rays, and will therefore have
amplitude containing the factor:
∑ ·
(2.18)
where G= (h a*, k b*, l c*); (a*, b*, c*) is the unit vector of a reciprocal
lattice.
The quantity SG, known as the geometrical structure factor, expresses the
extent to which interference of the waves scattered from identical ions within
the basis can diminish the intensity of the Bragg peak associated with the
reciprocal lattice vector G. The intensity in the Bragg peak, being
proportional to the square of the absolute value of the amplitude, will contain
a factor |SG|2. It is important to note that this is not the only source of G
dependence in the intensity. Further dependence on the change in wave vector
comes both from the ordinary angular dependence of any electromagnetic
scattering, together with the influence on the scattering of the detailed internal
structure of each individual ion in the basis. Therefore, the structure factor
alone cannot be used to predict the absolute intensity in a Bragg peak. It can
however, lead to a characteristic dependence on G that is easily discerned
even though other less distinctive G dependences have been superimposed
upon it. The one case in which the structure factor can be used with assurance
is when it vanishes. This occurs when the elements of the basis are so
arranged that there is complete destructive interference for the G in question.
For each of the possible space groups there are characteristic absences of
reflections, and from these the space group is determined.
The missing diffraction line for simple cubic, body-centered cubic, face-
centered cubic, and diamond are illustrated in Figure (2.12).
35
Fig.(2.12): PPowder patterns for fo differeent cubic crystals, illustratiing
chharacteristtic reflectiions and absences
a fo each typ
for ype.
2.7 Atomic
A Form Facttor:
I the ionss in the basis are not
If n identiccal, the strructure facctor assum
mes the
form
m:
∑ ·
(2.19)
(
W
Where fj, known ass the atom
mic form factor,
f is entirely
e deetermined
d by the
interrnal structture of thee ion thatt occupiess position dj in the basis. Thiis form
factoor is the raatio of thee amplitudde of the raadiation sccattered byy the atom
m to the
ampplitude of the radiaation whicch a singlle electronn would sscatter under the
me conditiions accoording to classicall theory. In the non relaativistic
sam
apprroximationn the form
m factor is given by:
exp
p . (2.20)
(
ψ is the tootal wave function of
o the atom
m and subbscripts i aand f referr to the
initial and finnal states, ψ*ψ is thee charge distribution
d n. The vecctor s biseects the
anglle 180-2θ between the
t incidennt and scaattered wavve vectorss. The mag
gnitude
36
of s is |s|=4πλ-1 sinθ. The vector λs/2π represents the change in momentum of
the X-ray. If the charge density of the atom is spherically symmetric the form
factor will be:
4 (2.21)
∑
iG .r j
S k = fie
j=1
(2.22)
where fj is atomic scattering factor (form factor). The usual form of this result
follows on writing, the lattice vector as:
r r r r
r j = u j a + v jb + w jc
(2.23)
Then, for the reflection labeled by u , v , w (i.e. Reciprocal lattice
vector), we have:
rr
G.rj = 2π ⎡⎣u j h + v j + w j l ⎤⎦
(2.24)
n
( )
∑
2π i u j h + v j k + w jl
SG = fie
j =1
(2.25)
Where n is a number of atom in unit cell, and ujvj wj was position of each
37
a) Structure Factor of the S.C. lattice:
The basis of the S.C. structure referred to the cubic cell has identical one
atom at (0,0,0). Thus, equation (2.25) becomes:
SG = fe2πi(0) = f
For any h, k, l. thus in the S.C. all planes in the crystal are
reflected, i.e. there are not any missing planes in the diffraction
pattern.
S G = f1 + f 2 e π i (h + k + l ) {eiθ
= cosθ + i sinθ}
{
SG = f1 + f2 cos ⎡⎣π ( h+ k +l )⎤⎦ +i sin ⎡⎣π ( h+ k +l ) ⎤⎦ }
For identical atoms f1 = f 2
{
SG = f 1 + cos ⎡⎣π ( h + k + l ) + i sin ⎡⎣π ( h + k + l ) ⎤⎦ ⎤⎦ }
• if h+k+l = odd integer ⇒ SG = 0
thus, in the B.C.C. lattice no reflections can occur for which the some of
the indices is odd integers, the reflections occur only when the some of the
indices is even integers. We had previously concluded from geometrical
considerations that the base-centered cell would produce a 001 reflection but
that the body-centered cell would not. This result is in agreement with the
structure-factor equations for these two cells.
38
c) Structure Factor of the F.C.C. lattice:
The basis of the F.C.C. structure referred to the cubic cell has four
identical atoms at the positions:
1 1 1 1 1 1
000 , 0 , 0 , 0
2 2 2 2 2 2
SG = f ⎡⎣1+ eπ i (h+k ) + e ( ) + e ( ) ⎤⎦
π i h+l π i k +l
* S = 0 if h, k, l are mixed.
G
39
Chapter Three
Crystal Structure Determinations
3.1 Introduction:
When a material is irradiated with a parallel beam of monochromatic X-
ray, the atomic lattice of the sample acts as a three dimensional diffraction
grating causing the X-ray beam to be diffracted to specific angles. The
diffraction pattern, that includes position (angles) and intensities of the
diffracted beam, provides several information about the sample.
Determination of indices and unit cell from powder scan is one of
theses procedure.
For the sake of more understanding and practice our knowledge, the
analyzed was done on the eight experimental spectrum of powder
diffractometer produced by iron target X-ray tube that the characteristics
wavelength of the incident X-ray was (λ=0.193609 nm). The entire spectrums
are taken from “Crystal Structure Database for Inorganic Compounds”,
Version 1.0.
(3.1)
λ2
Since the sum is always integral and is a
4a 2
constant for any one pattern, the problem of indexing the pattern of a cubic
substance is one of finding a set of integers (s) which will yield a constant
quotient when divided one by one into the observed ( ) values. (Certain
integers, such as 7, 15, 23, 28, 31, etc., are impossible because they cannot be
40
formed by the sum of three squared integers). Once the proper integers (s) are
found, the indices hkl of each line can be written down by inspection. The
proper set of integers (s) is not hard to find because there are only a few
possible sets. Each of the four common cubic lattice types has a characteristic
sequence of diffraction lines, described by their sequential (s) values:
Each set can be tried in turn. if a set of integers satisfying Eq. (3.1)
cannot be found, then the substance involved does not belong to the cubic
system, and other possibilities (tetragonal, hexagonal, etc.) must be explored.
The following example will illustrate the steps involved in indexing the
pattern of a cubic substance and finding its lattice parameter. In this particular
example Fe kα radiation was used and eight diffraction lines were observed.
Their ( ) values are listed in the second column of Tables. After a few
trials, the integers (s) listed in the third column were found to produce the
reasonably constant quotients listed in the fourth column, when divided into
the observed ( ) values. The fifth column lists the lattice parameter
calculated from each line position, and the sixth column gives the Miller
indices of each line. The systematic error in ( ) shows up as a gradual
decrease in the value of λ2/4a2, and a gradual increase in the value of a, as
increases. In addition, the Bravais lattice of the specimen can be determined
by observing which lines are present and which absent.
The calculations are made for Fe Kα radiation (λ=0.193609 nm). The
positions of all the diffraction lines which would be formed under these
conditions are indicated as they would appear on a film..
Powder patterns of cubic substances can usually be distinguished at a
glance from those of noncubic substances, since the latter patterns normally
41
contain many more lines. In addition, the Bravais lattice can usually be
identified by inspection: there is an almost regular sequence of lines in simple
cubic and body-centered cubic patterns, but the former contains almost twice
as many lines, while a face-centered cubic pattern is characterized by a pair of
lines, followed by a single line, followed by a pair, another single line, etc.
The problem of indexing a cubic pattern is of course very much
simplified if the substance involved is known to be cubic and if the lattice
parameter is also known. The simplest procedure then is to calculate the value
of (λ2/4a2) and divide this value into the observed ( ) values to obtain the
value of (s) for each line.
There is one difficulty that may arise in the interpretation of cubic
powder patterns, and that is due to a possible ambiguity between simple cubic
and body-centered cubic patterns. There is a regular sequence of lines in both
patterns up to the sixth line; the sequence then continues regularly in body-
centered cubic patterns, but is interrupted in simple cubic patterns since (s =
7) is impossible. Therefore, if λ is so large, or a so small, that six lines or less
appear on the pattern, the two Bravais lattices are indistinguishable. For
example, suppose that the substance involved is actually body-centered cubic
but the investigator mistakenly indexes it as simple cubic, assigning the value
(s = 1) to the first line, (s = 2) to the second line, etc. He thus obtains a value
of (λ2/4a2) twice as large as the true one, and a value of a which is (l/√2)
times the true one. This mistake becomes apparent when the number of atoms
per unit cell is calculated from the measured density of the specimen; the
wrong cell size will give a nonintegral value for the number of atoms per cell,
and such a value is impossible. The ambiguity in the diffraction pattern itself
can be avoided by choosing a wavelength short enough to produce at least
seven lines on the pattern.
42
3.3 Crystal Structure of BaO:
The X-ray diffraction for BaO powder patterns are shown in Figure
(3.1). These were obtained for BaO using an X-ray wavelength of
(λ=0.193609 nm). After a few trials, the integers (s) listed in the third column
of the Table (3.1), were found to produce the reasonably constant quotients
listed in the fourth column, when divided into the observed ( ) values.
The fifth column lists the lattice parameter calculated from each line position,
and the sixth column gives the Miller indices of each line.
The lattice parameter calculated form each the 11 peaks, shows the
constant vales of (5.498oA). It is clear from the miller indices, which is listed
in sixth column that the crystal structure of BaO was Face Center Cubic. The
sketch of this crystal structure is shown in Figure (3.2).
43
Table(3.1): Indexing of BaO (face center cube):
Line no. Sin2(Ѳ) S λ2/4a2 a(oA) hkl
1 0.093 3 0.031 5.498 111
2 0.122 4 0.031 5.498 200
3 0.246 8 0.031 5.498 220
4 0.337 11 0.031 5.498 311
5 0.366 12 0.031 5.498 222
6 0.491 16 0.031 5.498 400
7 0.582 19 0.031 5.498 331
8 0.612 20 0.031 5.498 420
9 0.734 24 0.031 5.498 422
10 0.828 27 0.031 5.498 333,511
11 0.980 32 0.031 5.498 440
44
3.4 Crystal Structure of NaO2:
The X-ray diffraction for NaO2 powder patterns are shown in Figure
(3.3). The Figure shows that all lines which have mixed odd and even indices,
such as 100, 110, etc., are absent from the pattern. Reference to the rules
relating Bravais lattices to observed and absent reflections, given in Table
(3.2), shows that the Bravais lattice of this specimen is Face Centered Cubic
and the lattice parameter shows the constant vales of (5.498oA). We now have
certain information about the arrangement of atoms within the unit cell, and it
should be noted that we have had to make use of observed line intensities in
order to obtain this information. In this particular case, the observation
consisted simply in noting which lines had zero intensity.
45
Table(3.2): Indexing of NaO2 (face center cube):
Line no. Sin2(Ѳ) S λ2/4a2 a(oA) hkl
1 0.093 3 0.031 5.498 111
2 0.122 4 0.031 5.498 200
3 0.246 8 0.031 5.498 220
4 0.337 11 0.031 5.498 311
5 0.366 12 0.031 5.498 222
6 0.491 16 0.031 5.498 400
7 0.586 19 0.031 5.498 331
8 0.616 20 0.031 5.498 420
9 0.738 24 0.031 5.498 422
10 0.834 27 0.031 5.498 333,511
11 0.986 32 0.031 5.498 440
46
Fig.(3.4): X-ray diffraction patterns for MgS powder.
47
3.7 Crystal Structure of ZnZr:
The X-ray diffraction for ZnZr powder patterns are shown in Figure
(3.5). Reference to the rules relating Bravais lattices to observed and absent
reflections, given in Table (3.4), shows that the Bravais lattice of this
specimen is Body Centered Cubic. The lattice parameter shows the constant
vales of (5.498oA). The sketch of this crystal structure is shown in Figure
(3.6).
48
Fig.(3.6): Crystal structure of ZnZr sample.
49
Fig.(3.7): X-ray diffraction patterns for AgCd powder.
50
From the miller indices, which is listed in sixth column the crystal structure of
CuSc can be estimated to be Body Center Cubic.
51
Fig.(3.9): X-ray diffraction patterns for LaTe powder.
52
Fig.(3.10): Crystal structure of LaTe sample.
53
Table(3.8): Indexing of ErTe (simple cube):
Line no. Sin2(Ѳ) S λ2/4a2 a(oA) hkl
1 0.103 1 0.103 3.01 100
2 0.209 2 0.104 3.00 110
3 0.308 3 0.103 3.01 111
4 0.413 4 0.103 3.01 200
5 0.517 5 0.103 3.01 210
6 0.625 6 0.104 3.00 211
7 0.831 8 0.103 3.01 220
8 0.935 9 0.103 3.01 300
3-11 Conclusions:
Structures are most often determined by diffraction of X-rays from
single crystals of the sample, although structure determination from
polycrystalline powders is also important. The diffraction of this ray by
crystal provide information about the internal structure of the crystal. The X-
ray can be used, because there wavelength is so short that is the same order of
magnitude as a lattice constant of crystal.
Powder patterns of cubic substances can usually be distinguished at a
glance from those of noncubic substances, since the latter patterns normally
contain many more lines. In addition, the Bravais lattice can usually be
identified by inspection: there is an almost regular sequence of lines in simple
cubic and body-centered cubic patterns, but the former contains almost twice
as many lines, while a face-centered cubic pattern is characterized by a pair of
lines, followed by a single line, followed by a pair, another single line, etc.
The crystal structure of some different binary system have been successfully
determined from X-ray powder diffraction data. The analysis of the spectrums
54
shows that the (BaO, NaO2, MgS) have Face Centered Cubic structures with
the lattice parameters of (5.498, 5.498, 5.25)oA respectively, while the
samples of (ZnZr, AgCd, CuSc) have Body Centered Cubic crystal structures
with the values of lattice parameters (3.34, 3.34, 3.24)oA respectively, finally
the samples of (LaTe, ErTe) have Simple Cubic with the lattice parameters
(3.22, 3.01) oA respectively.
55
References
Books
1- Uri Shmueli, “Theories and Techniques of Crystal Structure
Determination”, The moral rights of the authors have been asserted
Database right Oxford University Press, (2007).
6- Laszlo and Mechael C. Martin, “Solid State Physics”, John Wiley and
Sons, (1996).
Internet
1- http://materials.binghamton.edu/labs/xray/xray.html
2- http://www2.egr.uh.edu/~smotamar/XRay/XRay.html
3- http://www.answers.com/topic/crystal-structure
4- http://reference.iucr.org/dictionary/Bragg%27s_law
5- http://matter.org.uk/diffraction/x-ray/default.htm
6- http://www.eng.uc.edu/~gbeaucag/Classes/XRD.html
7- http://www.khulsey.com/jewelry/crystalline_structures.html
8- http://en.wikipedia.org/wiki/Crystal_structure
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