Toward Increased Reliability, Transparency, and Accessibility in Cross-linking Mass Spectrometry

Affiliations

• ¹ Department of Biology, Institute of Molecular Systems Biology, ETH Zurich, 8093 Zurich, Switzerland. Electronic address: [email protected].
• ² Bijvoet Centre for Biomolecular Research, Faculty of Science-Chemistry, Utrecht University, Padualaan 8, 3584 CH Utrecht, The Netherlands.
• ³ University of Victoria-Genome British Columbia Proteomics Centre, University of Victoria, Victoria, BC V8Z 7X8, Canada; Department of Biochemistry and Microbiology, University of Victoria, Victoria, BC V8P 5C2, Canada; Segal Cancer Proteomics Centre, Lady Davis Institute, Jewish General Hospital, McGill University, Montreal, QC H3T 1E2, Canada; Gerald Bronfman Department of Oncology, Jewish General Hospital, McGill University, Montreal, QC H3T 1E2, Canada; Center for Computational and Data-Intensive Science and Engineering, Skolkovo Institute of Science and Technology, Moscow 121205, Russia.
• ⁴ Department of Pharmaceutical Chemistry, University of California San Francisco, 600 16th Street, Genentech Hall, Suite N472A, San Francisco, CA 94143-2240, USA.
• ⁵ Institut Pasteur-CNRS USR 2000, Mass Spectrometry for Biology Unit, 28, Rue du Dr. Roux, 75 015 Paris, France.
• ⁶ Wellcome Centre for Cell Biology, School of Biological Sciences, University of Edinburgh, Edinburgh EH9 3BF, Scotland, UK.
• ⁷ Computational Systems Biochemistry Research Group, Max-Planck Institute of Biochemistry, Am Klopferspitz 18, 82152 Martinsried, Germany.
• ⁸ National Institute of Biological Sciences, Beijing, Beijing 102206, China.
• ⁹ Bioanalytics, Institute of Biotechnology, Technische Universität Berlin, 13355 Berlin, Germany.
• ¹⁰ Department of Biology, Institute of Molecular Systems Biology, ETH Zurich, 8093 Zurich, Switzerland.
• ¹¹ Institute of Chemistry, University of Campinas, Campinas - SP 13083-970, Brazil.
• ¹² Biomolecular Mass Spectrometry and Proteomics, Bijvoet Centre for Biomolecular Research and Utrecht Institute for Pharmaceutical Sciences, Utrecht University, 3584 CH Utrecht, The Netherlands; Netherlands Proteomics Centre, Utrecht University, 3584 CH Utrecht, The Netherlands.
• ¹³ Institute for Systems Biology, 401 Terry Avenue North, Seattle, WA 98109, USA.
• ¹⁴ Department of Physiology & Biophysics, University of California, Irvine, Irvine, CA 92697, USA.
• ¹⁵ Graduate School of Pharmaceutical Sciences, Kyoto University, Kyoto 606-8501, Japan.
• ¹⁶ Institute of Integrative Biology, University of Liverpool, Biosciences Building, Crown Street, Liverpool L69 7ZB, UK.
• ¹⁷ Department of Biological Chemistry, Institute of Life Sciences, Hebrew University of Jerusalem, Jerusalem 91904, Israel.
• ¹⁸ Department of Computer Science, University of Tübingen, Sand 14, 72076 Tübingen, Germany; Institute for Bioinformatics and Medical Informatics, University of Tübingen, Sand 14, 72076 Tübingen, Germany; Institute for Translational Bioinformatics, University Hospital Tübingen, Hoppe-Seyler-Strasse 9, 72076 Tübingen, Germany; Biomolecular Interactions, Max Planck Institute for Developmental Biology, Max-Planck-Ring 5, 72076 Tübingen, Germany.
• ¹⁹ Research Institute of Molecular Pathology, Campus-Vienna-Biocenter 1, 1030 Vienna, Austria.
• ²⁰ Department of Computer Science, University of Tübingen, Sand 14, 72076 Tübingen, Germany; Biomolecular Interactions, Max Planck Institute for Developmental Biology, Max-Planck-Ring 5, 72076 Tübingen, Germany.
• ²¹ Biotechnology and Biomedicine Centre of the Academy of Sciences and Charles University, Institute of Microbiology, The Czech Academy of Sciences, 252 50 Vestec, Czech Republic.
• ²² Segal Cancer Proteomics Centre, Lady Davis Institute, Jewish General Hospital, McGill University, Montreal, QC H3T 1E2, Canada; Center for Computational and Data-Intensive Science and Engineering, Skolkovo Institute of Science and Technology, Moscow 121205, Russia.
• ²³ Department of Bioengineering and Therapeutic Sciences, Department of Pharmaceutical Chemistry, California Institute for Quantitative Biosciences, University of California, San Francisco, 1700 4th Street, San Francisco, CA 94143, USA.
• ²⁴ Interdisciplinary Research Center HALOmem, Institute for Biochemistry and Biotechnology, Martin Luther University Halle-Wittenberg, Kurt-Mothes-Strasse 3a, 06120 Halle/Saale, Germany.
• ²⁵ Department of Biochemistry and Molecular Biology, University of Calgary, Calgary, AB T2N 4N1, Canada; Robson DNA Science Centre, Arnie Charbonneau Cancer Institute, University of Calgary, Calgary, AB T2N 4N1, Canada; Department of Chemistry, University of Calgary, Calgary, AB T2N 4N1, Canada.
• ²⁶ Department of Pharmaceutical Chemistry & Bioanalytics, Charles Tanford Protein Center, Martin Luther University Halle-Wittenberg, Kurt-Mothes-Strasse 3a, 06120 Halle/Saale, Germany.
• ²⁷ School of Molecular and Cellular Biology, Faculty of Biological Sciences and Astbury Centre for Structural and Molecular Biology, University of Leeds, Leeds LS2 9JT, UK; Department of Chemistry, Biomolecular and Analytical Mass Spectrometry Group, University of Antwerp, Groenenborgerlaan 171, 2020 Antwerp, Belgium.
• ²⁸ University of Konstanz, Department of Biology, Universitätsstrasse 10, 78457 Konstanz, Germany; Konstanz Research School Chemical Biology, University of Konstanz, Universitätsstrasse 10, 78457 Konstanz, Germany.
• ²⁹ Institute of Structural and Molecular Biology, Birkbeck College, University of London, Malet Street, London WC1E 7HX, UK; Institute of Structural and Molecular Biology, Division of Biosciences, University College London, Gower Street, London WC1E 6BT, UK.
• ³⁰ Bioanalytical Mass Spectrometry, Max Planck Institute for Biophysical Chemistry, Am Fassberg 11, 37077 Göttingen, Germany.
• ³¹ Thermo Fisher Scientific, 355 River Oaks Parkway, San Jose CA 95134, USA.
• ³² European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK.
• ³³ School of Biotechnology and Biomolecular Sciences, University of New South Wales, Sydney 2052, Australia.
• ³⁴ Wellcome Centre for Cell Biology, School of Biological Sciences, University of Edinburgh, Edinburgh EH9 3BF, Scotland, UK; Bioanalytics, Institute of Biotechnology, Technische Universität Berlin, 13355 Berlin, Germany. Electronic address: [email protected].